Query 040667
Match_columns 207
No_of_seqs 275 out of 2576
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 17:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ga2_A E3 SUMO-protein ligase 99.9 2.3E-23 7.7E-28 141.3 8.6 127 2-128 2-134 (150)
2 4gyw_A UDP-N-acetylglucosamine 99.9 2.6E-22 8.8E-27 166.3 16.2 127 2-128 14-145 (723)
3 3vtx_A MAMA; tetratricopeptide 99.9 1.2E-21 4.1E-26 136.6 16.7 144 2-145 10-161 (184)
4 2pl2_A Hypothetical conserved 99.9 8.2E-22 2.8E-26 141.4 16.0 123 2-124 10-148 (217)
5 2pl2_A Hypothetical conserved 99.9 2.7E-21 9.2E-26 138.7 15.9 144 2-145 44-205 (217)
6 2h6f_A Protein farnesyltransfe 99.9 1.9E-20 6.7E-25 144.9 15.8 128 2-129 102-235 (382)
7 4gco_A Protein STI-1; structur 99.8 3.2E-20 1.1E-24 122.0 13.5 107 23-129 5-116 (126)
8 4gco_A Protein STI-1; structur 99.8 2E-20 6.7E-25 123.0 12.4 103 2-104 18-125 (126)
9 3urz_A Uncharacterized protein 99.8 5.8E-20 2E-24 130.9 15.7 124 3-126 10-189 (208)
10 3vtx_A MAMA; tetratricopeptide 99.8 1.2E-19 4.1E-24 126.4 16.9 125 2-126 44-173 (184)
11 4i17_A Hypothetical protein; T 99.8 1.6E-19 5.3E-24 130.0 18.0 125 2-126 12-149 (228)
12 3gyz_A Chaperone protein IPGC; 99.8 1.7E-21 6E-26 131.9 7.1 118 10-127 15-137 (151)
13 4gyw_A UDP-N-acetylglucosamine 99.8 1.2E-19 4E-24 150.5 15.0 125 2-126 48-177 (723)
14 2vgx_A Chaperone SYCD; alterna 99.8 1E-19 3.4E-24 122.9 11.1 120 17-136 7-131 (148)
15 4i17_A Hypothetical protein; T 99.8 6.1E-19 2.1E-23 126.9 15.8 127 2-128 47-214 (228)
16 2h6f_A Protein farnesyltransfe 99.8 2.7E-19 9.1E-24 138.5 14.7 127 2-128 136-274 (382)
17 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.4E-18 1.2E-22 125.7 19.2 145 2-146 48-267 (275)
18 4ga2_A E3 SUMO-protein ligase 99.8 8.8E-19 3E-23 118.5 13.8 108 2-109 36-149 (150)
19 2fo7_A Synthetic consensus TPR 99.8 3.9E-18 1.3E-22 111.8 16.5 125 2-126 6-135 (136)
20 4abn_A Tetratricopeptide repea 99.8 1.8E-18 6.1E-23 137.7 15.7 144 2-146 142-313 (474)
21 3as5_A MAMA; tetratricopeptide 99.8 8.2E-18 2.8E-22 116.3 16.8 126 2-127 13-143 (186)
22 3qky_A Outer membrane assembly 99.8 5.2E-18 1.8E-22 124.6 16.4 128 2-129 20-183 (261)
23 2vq2_A PILW, putative fimbrial 99.8 7.8E-18 2.7E-22 120.0 16.6 126 2-127 13-146 (225)
24 3gyz_A Chaperone protein IPGC; 99.8 1.6E-18 5.5E-23 117.2 12.3 91 2-92 41-131 (151)
25 2xcb_A PCRH, regulatory protei 99.8 8.9E-19 3E-23 117.3 10.9 117 18-134 5-126 (142)
26 1w3b_A UDP-N-acetylglucosamine 99.8 7.1E-18 2.4E-22 130.4 17.3 125 2-126 208-337 (388)
27 3as5_A MAMA; tetratricopeptide 99.8 3.1E-18 1.1E-22 118.4 13.7 127 2-128 47-178 (186)
28 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-17 4E-22 120.7 17.1 126 2-127 62-192 (243)
29 2e2e_A Formate-dependent nitri 99.8 4.7E-18 1.6E-22 117.6 14.3 122 7-128 20-149 (177)
30 2q7f_A YRRB protein; TPR, prot 99.8 7.9E-18 2.7E-22 121.6 16.0 125 2-126 28-157 (243)
31 1hh8_A P67PHOX, NCF-2, neutrop 99.8 6.3E-18 2.2E-22 120.1 15.0 138 2-144 11-169 (213)
32 4abn_A Tetratricopeptide repea 99.8 8.4E-19 2.9E-23 139.5 11.5 143 2-145 107-278 (474)
33 4eqf_A PEX5-related protein; a 99.8 7.1E-18 2.4E-22 129.3 15.4 90 3-92 71-160 (365)
34 1w3b_A UDP-N-acetylglucosamine 99.8 1.2E-17 4E-22 129.2 16.1 124 3-126 141-269 (388)
35 4eqf_A PEX5-related protein; a 99.8 4.4E-18 1.5E-22 130.4 13.6 125 2-126 182-313 (365)
36 3uq3_A Heat shock protein STI1 99.8 4.7E-18 1.6E-22 123.7 13.1 126 2-127 43-206 (258)
37 3uq3_A Heat shock protein STI1 99.8 1.2E-17 4.1E-22 121.5 15.2 123 2-124 84-237 (258)
38 3qky_A Outer membrane assembly 99.8 1.4E-17 4.9E-22 122.2 15.5 127 2-128 57-229 (261)
39 2pzi_A Probable serine/threoni 99.8 2.5E-18 8.6E-23 142.3 12.5 124 2-126 438-566 (681)
40 4gcn_A Protein STI-1; structur 99.8 6.4E-18 2.2E-22 111.1 12.0 95 32-126 9-115 (127)
41 3hym_B Cell division cycle pro 99.8 2.1E-17 7.3E-22 124.3 16.5 144 2-145 130-290 (330)
42 2ho1_A Type 4 fimbrial biogene 99.8 1.3E-17 4.3E-22 121.4 14.7 125 2-126 42-173 (252)
43 1a17_A Serine/threonine protei 99.8 3.2E-17 1.1E-21 111.7 15.9 123 2-124 18-147 (166)
44 2ho1_A Type 4 fimbrial biogene 99.8 8.5E-17 2.9E-21 117.0 18.8 126 2-127 76-208 (252)
45 2vq2_A PILW, putative fimbrial 99.8 8.7E-17 3E-21 114.6 18.0 125 2-126 47-180 (225)
46 3u4t_A TPR repeat-containing p 99.8 1.9E-17 6.4E-22 121.7 14.2 125 2-127 8-141 (272)
47 4gcn_A Protein STI-1; structur 99.8 2.5E-17 8.4E-22 108.3 13.3 92 1-92 12-110 (127)
48 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.5E-17 1.9E-21 116.7 15.8 127 2-128 9-181 (225)
49 3hym_B Cell division cycle pro 99.8 4.9E-17 1.7E-21 122.3 16.2 125 3-127 62-192 (330)
50 3upv_A Heat shock protein STI1 99.8 7.6E-17 2.6E-21 105.4 15.0 90 3-92 10-99 (126)
51 1p5q_A FKBP52, FK506-binding p 99.8 4.2E-17 1.4E-21 124.3 15.8 122 2-123 152-294 (336)
52 2vsy_A XCC0866; transferase, g 99.8 5.7E-17 1.9E-21 131.6 17.4 126 2-127 28-161 (568)
53 1fch_A Peroxisomal targeting s 99.8 3.6E-17 1.2E-21 125.1 15.2 125 2-127 187-318 (368)
54 1fch_A Peroxisomal targeting s 99.7 1.4E-16 4.8E-21 121.8 17.6 90 3-92 70-159 (368)
55 3upv_A Heat shock protein STI1 99.7 5E-17 1.7E-21 106.3 12.9 97 28-124 1-102 (126)
56 2r5s_A Uncharacterized protein 99.7 2.1E-17 7.3E-22 114.5 11.4 125 2-127 11-141 (176)
57 3ieg_A DNAJ homolog subfamily 99.7 1.2E-16 4E-21 121.4 16.4 124 3-126 9-152 (359)
58 3ieg_A DNAJ homolog subfamily 99.7 1.4E-16 4.7E-21 121.0 16.3 126 2-127 42-187 (359)
59 3u4t_A TPR repeat-containing p 99.7 1.8E-16 6.2E-21 116.5 16.1 125 2-127 42-175 (272)
60 3qou_A Protein YBBN; thioredox 99.7 2E-16 6.9E-21 118.0 16.1 126 2-127 122-252 (287)
61 2hr2_A Hypothetical protein; a 99.7 5.3E-17 1.8E-21 109.3 11.5 91 2-92 16-129 (159)
62 2vyi_A SGTA protein; chaperone 99.7 3.2E-16 1.1E-20 102.2 14.9 108 3-110 18-130 (131)
63 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.5E-16 1.2E-20 112.6 16.3 125 2-126 46-216 (225)
64 2xcb_A PCRH, regulatory protei 99.7 1.2E-16 4.1E-21 106.9 12.8 91 2-92 23-113 (142)
65 3sz7_A HSC70 cochaperone (SGT) 99.7 3.5E-16 1.2E-20 107.0 15.4 102 28-129 8-114 (164)
66 2y4t_A DNAJ homolog subfamily 99.7 2.6E-16 9.1E-21 123.5 16.9 125 2-126 31-175 (450)
67 2vsy_A XCC0866; transferase, g 99.7 6.3E-17 2.2E-21 131.3 13.5 118 10-127 2-124 (568)
68 3sz7_A HSC70 cochaperone (SGT) 99.7 2.4E-16 8.1E-21 107.8 14.4 91 2-92 16-106 (164)
69 2lni_A Stress-induced-phosphop 99.7 1.6E-16 5.6E-21 104.1 13.1 105 3-107 22-131 (133)
70 1hxi_A PEX5, peroxisome target 99.7 1.1E-16 3.9E-21 104.1 12.1 90 3-92 23-112 (121)
71 1wao_1 Serine/threonine protei 99.7 2.2E-17 7.5E-22 131.4 10.3 125 2-126 11-153 (477)
72 2c2l_A CHIP, carboxy terminus 99.7 8.6E-17 2.9E-21 119.6 12.9 124 2-127 9-168 (281)
73 2vgx_A Chaperone SYCD; alterna 99.7 1.3E-16 4.3E-21 107.6 12.6 91 2-92 26-116 (148)
74 3mkr_A Coatomer subunit epsilo 99.7 7E-16 2.4E-20 115.3 17.1 127 2-128 135-269 (291)
75 1qqe_A Vesicular transport pro 99.7 1E-16 3.4E-21 119.8 12.2 124 3-126 43-190 (292)
76 2pzi_A Probable serine/threoni 99.7 4.1E-17 1.4E-21 135.1 10.4 138 8-146 402-555 (681)
77 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.5E-17 1.2E-21 120.3 9.0 122 7-128 15-145 (275)
78 2y4t_A DNAJ homolog subfamily 99.7 1.5E-15 5.2E-20 119.1 18.8 125 3-127 217-362 (450)
79 2fbn_A 70 kDa peptidylprolyl i 99.7 3.1E-16 1.1E-20 110.5 13.4 121 2-122 43-185 (198)
80 3rkv_A Putative peptidylprolyl 99.7 1.2E-16 4.1E-21 109.1 10.7 91 2-92 16-124 (162)
81 2xpi_A Anaphase-promoting comp 99.7 9.7E-16 3.3E-20 124.4 17.4 125 2-126 412-548 (597)
82 1p5q_A FKBP52, FK506-binding p 99.7 1.4E-17 5E-22 126.9 6.2 135 10-144 126-283 (336)
83 3fp2_A TPR repeat-containing p 99.7 2.9E-16 1E-20 125.7 13.8 124 3-126 282-410 (537)
84 3cv0_A Peroxisome targeting si 99.7 6.6E-16 2.3E-20 116.0 14.9 121 6-126 147-272 (327)
85 2hr2_A Hypothetical protein; a 99.7 3E-16 1E-20 105.7 11.5 107 31-137 11-145 (159)
86 1qqe_A Vesicular transport pro 99.7 3.6E-16 1.2E-20 116.8 13.2 99 13-125 33-149 (292)
87 2xpi_A Anaphase-promoting comp 99.7 8.7E-16 3E-20 124.7 16.4 123 2-124 378-505 (597)
88 3q49_B STIP1 homology and U bo 99.7 1.2E-15 4E-20 100.9 13.9 101 26-126 4-109 (137)
89 3cv0_A Peroxisome targeting si 99.7 4.5E-16 1.5E-20 116.9 13.2 125 2-126 177-318 (327)
90 3q49_B STIP1 homology and U bo 99.7 1.7E-15 5.8E-20 100.1 14.3 91 2-92 14-104 (137)
91 3fp2_A TPR repeat-containing p 99.7 5.6E-16 1.9E-20 124.1 14.1 126 2-127 315-461 (537)
92 1elw_A TPR1-domain of HOP; HOP 99.7 3.1E-15 1.1E-19 95.7 14.5 90 3-92 10-99 (118)
93 1na0_A Designed protein CTPR3; 99.7 4.7E-15 1.6E-19 95.7 15.2 96 31-126 9-109 (125)
94 3mkr_A Coatomer subunit epsilo 99.7 3.3E-15 1.1E-19 111.6 15.9 121 3-128 107-234 (291)
95 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 8.7E-16 3E-20 121.6 13.4 120 2-121 273-413 (457)
96 1hxi_A PEX5, peroxisome target 99.7 1.1E-15 3.7E-20 99.5 11.4 94 33-126 19-117 (121)
97 2fbn_A 70 kDa peptidylprolyl i 99.7 2.6E-16 8.9E-21 110.9 9.0 130 4-133 11-161 (198)
98 3ro3_A PINS homolog, G-protein 99.7 1E-15 3.5E-20 103.3 11.4 125 2-126 14-161 (164)
99 1ouv_A Conserved hypothetical 99.7 9.8E-15 3.4E-19 107.6 17.5 120 2-125 11-145 (273)
100 3edt_B KLC 2, kinesin light ch 99.7 8.7E-16 3E-20 112.8 11.4 124 2-125 48-200 (283)
101 2gw1_A Mitochondrial precursor 99.7 1.7E-15 5.7E-20 120.6 13.6 125 2-126 309-447 (514)
102 2gw1_A Mitochondrial precursor 99.7 6.8E-16 2.3E-20 122.8 11.1 124 3-126 276-404 (514)
103 3rkv_A Putative peptidylprolyl 99.7 3.2E-15 1.1E-19 101.9 12.9 98 31-128 11-131 (162)
104 2if4_A ATFKBP42; FKBP-like, al 99.6 1.6E-16 5.3E-21 121.3 6.7 126 2-127 184-332 (338)
105 2lni_A Stress-induced-phosphop 99.6 6.5E-15 2.2E-19 96.4 13.6 102 27-128 12-118 (133)
106 2xev_A YBGF; tetratricopeptide 99.6 1.3E-14 4.4E-19 94.8 15.0 90 3-92 8-103 (129)
107 2qfc_A PLCR protein; TPR, HTH, 99.6 1.1E-14 3.8E-19 108.7 16.5 122 3-124 121-267 (293)
108 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.5E-16 5E-21 126.1 6.5 135 10-144 247-404 (457)
109 3u3w_A Transcriptional activat 99.6 3.5E-15 1.2E-19 111.4 13.5 121 3-123 121-266 (293)
110 3gw4_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 104.8 12.8 125 2-126 31-179 (203)
111 3ulq_A Response regulator aspa 99.6 1.1E-15 3.8E-20 118.1 10.8 121 3-123 109-253 (383)
112 3edt_B KLC 2, kinesin light ch 99.6 5.2E-15 1.8E-19 108.7 13.1 123 2-124 90-282 (283)
113 2kck_A TPR repeat; tetratricop 99.6 3.8E-15 1.3E-19 94.5 10.8 100 27-126 2-109 (112)
114 1elw_A TPR1-domain of HOP; HOP 99.6 2.4E-14 8.3E-19 91.5 14.7 99 30-128 3-106 (118)
115 2r5s_A Uncharacterized protein 99.6 3.2E-15 1.1E-19 103.4 11.1 120 2-122 45-172 (176)
116 1elr_A TPR2A-domain of HOP; HO 99.6 4.8E-15 1.6E-19 96.6 11.4 97 30-126 3-111 (131)
117 2dba_A Smooth muscle cell asso 99.6 2.4E-14 8.1E-19 95.5 14.9 102 26-127 23-132 (148)
118 1ihg_A Cyclophilin 40; ppiase 99.6 3.5E-15 1.2E-19 115.1 12.1 115 2-116 228-363 (370)
119 3nf1_A KLC 1, kinesin light ch 99.6 2.5E-15 8.6E-20 112.0 11.0 122 2-123 32-182 (311)
120 2ifu_A Gamma-SNAP; membrane fu 99.6 6.5E-15 2.2E-19 110.7 13.2 125 2-128 81-228 (307)
121 2vyi_A SGTA protein; chaperone 99.6 1.3E-14 4.3E-19 94.5 13.0 102 27-128 8-114 (131)
122 1ouv_A Conserved hypothetical 99.6 2.1E-14 7.3E-19 105.8 15.6 120 2-125 43-181 (273)
123 2ond_A Cleavage stimulation fa 99.6 5.5E-14 1.9E-18 105.6 18.2 121 3-123 105-232 (308)
124 3ulq_A Response regulator aspa 99.6 3.8E-15 1.3E-19 115.1 12.0 125 2-126 148-296 (383)
125 2ond_A Cleavage stimulation fa 99.6 9.3E-15 3.2E-19 109.9 13.5 119 9-127 69-202 (308)
126 2kck_A TPR repeat; tetratricop 99.6 9.1E-15 3.1E-19 92.7 11.6 91 2-92 11-104 (112)
127 2dba_A Smooth muscle cell asso 99.6 1.3E-14 4.5E-19 96.7 12.9 103 2-104 33-143 (148)
128 1elr_A TPR2A-domain of HOP; HO 99.6 2.7E-14 9.4E-19 92.9 14.1 106 2-107 9-125 (131)
129 3k9i_A BH0479 protein; putativ 99.6 1E-15 3.6E-20 98.8 7.1 84 9-92 2-88 (117)
130 2qfc_A PLCR protein; TPR, HTH, 99.6 1E-13 3.5E-18 103.4 18.5 124 3-126 81-228 (293)
131 3nf1_A KLC 1, kinesin light ch 99.6 6.1E-15 2.1E-19 109.9 11.9 125 2-126 116-310 (311)
132 2xev_A YBGF; tetratricopeptide 99.6 2.6E-14 8.9E-19 93.3 13.4 97 32-128 3-110 (129)
133 1na0_A Designed protein CTPR3; 99.6 7.9E-14 2.7E-18 89.9 15.4 107 2-108 14-125 (125)
134 4a1s_A PINS, partner of inscut 99.6 4.5E-15 1.6E-19 115.2 10.8 123 3-125 54-214 (411)
135 4g1t_A Interferon-induced prot 99.6 3.2E-14 1.1E-18 112.4 15.6 126 2-127 252-405 (472)
136 3urz_A Uncharacterized protein 99.6 1.7E-14 5.7E-19 102.5 12.7 99 30-128 3-122 (208)
137 3q15_A PSP28, response regulat 99.6 6.6E-15 2.2E-19 113.6 10.5 120 3-122 107-250 (378)
138 3u3w_A Transcriptional activat 99.6 8.9E-14 3E-18 103.8 16.4 123 4-126 82-228 (293)
139 3sf4_A G-protein-signaling mod 99.6 1.5E-14 5.1E-19 111.7 12.2 125 2-126 192-339 (406)
140 1a17_A Serine/threonine protei 99.6 9.2E-14 3.2E-18 94.3 14.6 116 31-146 13-138 (166)
141 3q15_A PSP28, response regulat 99.6 6.8E-14 2.3E-18 107.9 15.2 125 2-126 146-293 (378)
142 1zu2_A Mitochondrial import re 99.6 1.5E-14 5.1E-19 97.2 9.9 100 9-126 14-123 (158)
143 4a1s_A PINS, partner of inscut 99.6 1.7E-14 5.7E-19 112.0 11.7 125 2-126 228-375 (411)
144 4g1t_A Interferon-induced prot 99.6 8.6E-14 2.9E-18 109.9 15.9 128 2-129 56-210 (472)
145 3rjv_A Putative SEL1 repeat pr 99.6 5.8E-14 2E-18 100.0 13.5 117 2-123 23-158 (212)
146 3ro2_A PINS homolog, G-protein 99.6 1.9E-14 6.4E-19 108.0 11.3 125 2-126 188-335 (338)
147 3qou_A Protein YBBN; thioredox 99.6 1.9E-14 6.5E-19 107.3 10.9 121 2-122 156-283 (287)
148 3sf4_A G-protein-signaling mod 99.6 2.1E-14 7.2E-19 110.8 11.4 123 2-124 14-177 (406)
149 2ifu_A Gamma-SNAP; membrane fu 99.6 3.5E-14 1.2E-18 106.8 11.8 123 3-126 42-187 (307)
150 3ro2_A PINS homolog, G-protein 99.6 3E-14 1E-18 106.9 11.5 122 3-124 11-173 (338)
151 2c2l_A CHIP, carboxy terminus 99.6 6.6E-14 2.3E-18 104.0 12.9 100 28-127 1-105 (281)
152 2l6j_A TPR repeat-containing p 99.5 9.1E-15 3.1E-19 92.9 6.2 87 2-88 9-101 (111)
153 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.5E-13 5.2E-18 97.3 12.7 91 2-92 42-148 (213)
154 4f3v_A ESX-1 secretion system 99.5 5.8E-14 2E-18 103.4 10.6 123 3-126 108-240 (282)
155 2kat_A Uncharacterized protein 99.5 2.7E-13 9.3E-18 86.9 12.4 78 15-92 3-80 (115)
156 3dra_A Protein farnesyltransfe 99.5 1.2E-12 4E-17 98.1 16.9 113 14-126 50-178 (306)
157 2e2e_A Formate-dependent nitri 99.5 1.9E-13 6.6E-18 94.2 11.6 91 2-92 49-142 (177)
158 1zu2_A Mitochondrial import re 99.5 1.1E-13 3.9E-18 92.9 9.1 83 42-124 13-114 (158)
159 3gw4_A Uncharacterized protein 99.5 1.5E-13 5.2E-18 96.4 10.3 119 7-125 2-138 (203)
160 3rjv_A Putative SEL1 repeat pr 99.5 5.1E-13 1.7E-17 95.2 12.6 121 2-125 55-199 (212)
161 1dce_A Protein (RAB geranylger 99.5 9.2E-13 3.1E-17 106.8 15.3 137 4-140 70-238 (567)
162 1ihg_A Cyclophilin 40; ppiase 99.5 6E-13 2E-17 102.6 12.8 98 31-128 223-341 (370)
163 1na3_A Designed protein CTPR2; 99.5 8E-13 2.7E-17 80.7 10.9 78 2-79 14-91 (91)
164 3k9i_A BH0479 protein; putativ 99.5 8E-14 2.7E-18 89.8 6.5 85 43-127 2-94 (117)
165 3q7a_A Farnesyltransferase alp 99.5 9.1E-12 3.1E-16 94.5 18.4 135 5-139 96-253 (349)
166 2ooe_A Cleavage stimulation fa 99.5 4.4E-12 1.5E-16 102.0 17.6 125 3-127 327-458 (530)
167 3dra_A Protein farnesyltransfe 99.5 3.8E-12 1.3E-16 95.3 15.8 142 3-144 73-236 (306)
168 2fo7_A Synthetic consensus TPR 99.5 1.6E-12 5.5E-17 84.6 12.0 91 2-92 40-130 (136)
169 3ma5_A Tetratricopeptide repea 99.4 1.4E-12 4.8E-17 81.7 10.5 67 26-92 2-68 (100)
170 1dce_A Protein (RAB geranylger 99.4 4.4E-12 1.5E-16 102.8 15.7 121 9-129 40-179 (567)
171 1wao_1 Serine/threonine protei 99.4 1.3E-13 4.3E-18 109.8 6.3 116 31-146 6-131 (477)
172 1hz4_A MALT regulatory protein 99.4 4.1E-12 1.4E-16 97.5 13.4 124 3-126 20-167 (373)
173 2xm6_A Protein corresponding t 99.4 1.6E-11 5.4E-16 97.9 17.0 117 3-123 261-396 (490)
174 2if4_A ATFKBP42; FKBP-like, al 99.4 2.3E-13 7.9E-18 103.7 5.9 102 28-129 176-299 (338)
175 1hz4_A MALT regulatory protein 99.4 3.2E-12 1.1E-16 98.1 12.3 125 2-126 58-206 (373)
176 2ooe_A Cleavage stimulation fa 99.4 8.9E-12 3E-16 100.3 15.3 118 10-127 292-424 (530)
177 2l6j_A TPR repeat-containing p 99.4 2E-13 6.7E-18 86.6 4.5 90 30-119 3-103 (111)
178 3dss_A Geranylgeranyl transfer 99.4 1.8E-11 6E-16 92.4 15.8 119 13-131 90-230 (331)
179 3dss_A Geranylgeranyl transfer 99.4 2.5E-11 8.6E-16 91.6 16.4 134 8-141 40-192 (331)
180 1klx_A Cysteine rich protein B 99.4 1.2E-11 4.2E-16 82.0 13.1 110 10-125 8-128 (138)
181 3q7a_A Farnesyltransferase alp 99.4 2E-11 6.8E-16 92.6 15.8 120 9-128 66-201 (349)
182 3n71_A Histone lysine methyltr 99.4 3.1E-12 1.1E-16 101.8 11.6 118 5-122 317-463 (490)
183 2kc7_A BFR218_protein; tetratr 99.4 2.3E-12 7.8E-17 80.2 8.0 68 2-69 5-73 (99)
184 2kat_A Uncharacterized protein 99.4 1.2E-11 4.2E-16 79.1 11.2 79 48-126 2-85 (115)
185 3e4b_A ALGK; tetratricopeptide 99.4 1.5E-11 5.3E-16 97.2 13.9 116 2-121 181-314 (452)
186 1na3_A Designed protein CTPR2; 99.4 1E-11 3.5E-16 75.7 10.2 80 29-108 7-91 (91)
187 2xm6_A Protein corresponding t 99.3 9.2E-11 3.2E-15 93.5 17.5 117 3-123 45-180 (490)
188 4f3v_A ESX-1 secretion system 99.3 4.2E-11 1.4E-15 88.2 12.8 136 9-145 18-228 (282)
189 3ro3_A PINS homolog, G-protein 99.3 2.4E-11 8.2E-16 81.5 8.6 96 31-126 9-121 (164)
190 3ly7_A Transcriptional activat 99.3 6.5E-10 2.2E-14 84.4 16.9 115 12-126 214-342 (372)
191 4b4t_Q 26S proteasome regulato 99.3 2E-10 6.9E-15 89.6 14.8 123 4-126 11-207 (434)
192 3ma5_A Tetratricopeptide repea 99.3 5E-11 1.7E-15 74.5 9.1 80 2-81 12-93 (100)
193 3mv2_B Coatomer subunit epsilo 99.2 2.9E-10 9.8E-15 84.8 13.7 122 3-125 106-242 (310)
194 2kc7_A BFR218_protein; tetratr 99.2 4.3E-11 1.5E-15 74.3 6.3 84 35-126 4-93 (99)
195 3e4b_A ALGK; tetratricopeptide 99.2 5.9E-10 2E-14 88.1 14.0 110 9-124 263-388 (452)
196 1b89_A Protein (clathrin heavy 99.1 6.5E-10 2.2E-14 86.5 11.8 112 2-126 127-239 (449)
197 1klx_A Cysteine rich protein B 99.1 1.5E-09 5.1E-14 71.9 11.8 95 3-101 31-136 (138)
198 1xi4_A Clathrin heavy chain; a 99.1 1.9E-09 6.4E-14 93.7 12.8 112 2-121 1110-1248(1630)
199 2v5f_A Prolyl 4-hydroxylase su 99.0 3.1E-09 1.1E-13 66.8 9.7 73 2-74 10-89 (104)
200 1xi4_A Clathrin heavy chain; a 99.0 1.5E-08 5E-13 88.3 15.2 111 3-126 1201-1312(1630)
201 3bee_A Putative YFRE protein; 99.0 4E-09 1.4E-13 64.8 8.7 64 27-90 2-68 (93)
202 3qwp_A SET and MYND domain-con 99.0 2.5E-09 8.7E-14 83.8 9.4 84 9-92 299-398 (429)
203 3qww_A SET and MYND domain-con 99.0 1.6E-09 5.3E-14 85.0 8.0 82 11-92 312-409 (433)
204 4b4t_Q 26S proteasome regulato 99.0 7.6E-09 2.6E-13 80.7 11.8 121 5-125 103-247 (434)
205 1b89_A Protein (clathrin heavy 98.9 1.5E-10 5E-15 90.1 1.0 103 33-144 124-226 (449)
206 3n71_A Histone lysine methyltr 98.9 9.9E-09 3.4E-13 81.7 10.5 88 37-124 315-423 (490)
207 3qww_A SET and MYND domain-con 98.9 6.9E-09 2.4E-13 81.4 9.0 82 43-124 310-412 (433)
208 1pc2_A Mitochondria fission pr 98.9 3.8E-08 1.3E-12 65.4 11.1 93 49-141 16-118 (152)
209 3bee_A Putative YFRE protein; 98.9 6.9E-08 2.4E-12 59.2 11.4 76 61-137 2-85 (93)
210 3mv2_B Coatomer subunit epsilo 98.9 8.6E-08 3E-12 71.5 13.8 122 3-129 142-288 (310)
211 3qwp_A SET and MYND domain-con 98.8 5.9E-08 2E-12 76.1 11.2 87 38-124 294-401 (429)
212 1pc2_A Mitochondria fission pr 98.8 1.3E-07 4.5E-12 62.8 10.8 81 12-92 13-98 (152)
213 2v5f_A Prolyl 4-hydroxylase su 98.7 2.8E-07 9.4E-12 57.7 10.6 75 31-127 5-79 (104)
214 3u64_A Protein TP_0956; tetrat 98.7 7.6E-07 2.6E-11 65.3 12.9 101 27-127 148-273 (301)
215 3u64_A Protein TP_0956; tetrat 98.6 1.9E-07 6.5E-12 68.5 8.9 81 12-92 178-267 (301)
216 4h7y_A Dual specificity protei 98.6 3E-06 1E-10 55.7 13.2 117 25-145 7-142 (161)
217 4e6h_A MRNA 3'-END-processing 98.6 1.6E-06 5.6E-11 71.6 14.1 41 18-58 365-405 (679)
218 3ffl_A Anaphase-promoting comp 98.5 1.9E-06 6.6E-11 57.7 9.8 57 4-60 27-92 (167)
219 1nzn_A CGI-135 protein, fissio 98.5 8.3E-06 2.8E-10 52.3 12.1 94 47-140 17-120 (126)
220 4e6h_A MRNA 3'-END-processing 98.5 4.9E-06 1.7E-10 68.9 13.9 121 7-127 444-574 (679)
221 3ly7_A Transcriptional activat 98.3 1.1E-05 3.7E-10 61.5 12.3 124 22-145 185-330 (372)
222 4g26_A Pentatricopeptide repea 98.2 0.00019 6.5E-09 57.4 17.7 112 11-123 84-204 (501)
223 4g26_A Pentatricopeptide repea 98.2 0.00027 9.2E-09 56.5 18.0 121 5-126 34-174 (501)
224 3ffl_A Anaphase-promoting comp 98.1 3E-05 1E-09 51.9 8.6 89 32-120 21-148 (167)
225 1nzn_A CGI-135 protein, fissio 98.0 0.00015 5E-09 46.5 11.1 83 10-92 14-101 (126)
226 2uy1_A Cleavage stimulation fa 98.0 0.00022 7.5E-09 56.9 14.3 113 9-122 298-412 (493)
227 2uy1_A Cleavage stimulation fa 98.0 0.00027 9.2E-09 56.4 14.5 112 14-126 196-352 (493)
228 3o48_A Mitochondria fission 1 97.8 0.00074 2.5E-08 43.5 11.5 77 64-140 39-124 (134)
229 1y8m_A FIS1; mitochondria, unk 97.8 0.0012 4.2E-08 43.0 11.8 80 62-141 36-124 (144)
230 3o48_A Mitochondria fission 1 97.7 0.00036 1.2E-08 44.9 8.4 63 30-92 39-105 (134)
231 1y8m_A FIS1; mitochondria, unk 97.6 0.00086 2.9E-08 43.7 9.0 63 30-92 38-104 (144)
232 3mkq_B Coatomer subunit alpha; 97.5 0.0087 3E-07 40.7 13.2 102 6-120 14-115 (177)
233 1zbp_A Hypothetical protein VP 97.3 0.021 7.1E-07 41.5 14.7 111 5-126 5-132 (273)
234 3spa_A Mtrpol, DNA-directed RN 97.3 0.064 2.2E-06 46.4 19.4 114 33-146 129-260 (1134)
235 2ff4_A Probable regulatory pro 97.2 0.0046 1.6E-07 47.8 11.4 111 8-126 126-260 (388)
236 4h7y_A Dual specificity protei 97.1 0.01 3.5E-07 39.1 10.3 83 9-92 25-121 (161)
237 1ya0_A SMG-7 transcript varian 97.1 0.0052 1.8E-07 48.9 10.4 75 3-77 158-232 (497)
238 3kae_A CDC27, possible protein 97.0 0.034 1.2E-06 37.5 13.8 111 8-126 13-146 (242)
239 1ya0_A SMG-7 transcript varian 97.0 0.0076 2.6E-07 48.0 10.5 74 33-106 154-232 (497)
240 4gns_B Protein CSD3, chitin bi 96.9 0.0033 1.1E-07 52.5 7.9 54 4-57 344-397 (754)
241 3mkq_A Coatomer beta'-subunit; 96.7 0.016 5.6E-07 48.5 11.1 45 42-91 663-707 (814)
242 4gns_B Protein CSD3, chitin bi 96.7 0.0059 2E-07 51.0 8.0 56 37-92 343-398 (754)
243 4b4t_S RPN3, 26S proteasome re 96.7 0.005 1.7E-07 49.0 7.1 121 8-128 147-304 (523)
244 3txn_A 26S proteasome regulato 96.7 0.049 1.7E-06 42.1 12.3 89 36-124 104-211 (394)
245 3mkq_B Coatomer subunit alpha; 96.6 0.063 2.2E-06 36.4 11.0 80 30-117 7-99 (177)
246 4b4t_R RPN7, 26S proteasome re 96.5 0.0095 3.2E-07 46.7 7.8 94 31-124 131-238 (429)
247 3mkq_A Coatomer beta'-subunit; 96.5 0.059 2E-06 45.1 13.1 77 8-89 663-747 (814)
248 3kae_A CDC27, possible protein 96.4 0.12 4.2E-06 34.9 15.8 29 98-126 212-240 (242)
249 3txn_A 26S proteasome regulato 96.2 0.19 6.6E-06 38.7 13.2 91 2-92 104-208 (394)
250 4b4t_P 26S proteasome regulato 96.1 0.15 5.1E-06 40.1 12.3 89 35-123 141-247 (445)
251 4b4t_R RPN7, 26S proteasome re 96.0 0.066 2.3E-06 41.9 9.9 91 2-92 136-235 (429)
252 4fhn_B Nucleoporin NUP120; pro 95.8 0.26 8.8E-06 43.5 13.9 110 7-120 822-964 (1139)
253 2ff4_A Probable regulatory pro 95.8 0.044 1.5E-06 42.3 8.1 57 3-59 177-233 (388)
254 3spa_A Mtrpol, DNA-directed RN 95.8 0.17 5.8E-06 43.9 12.0 88 3-92 133-228 (1134)
255 4b4t_P 26S proteasome regulato 95.3 0.78 2.7E-05 36.0 15.0 91 2-92 142-245 (445)
256 4fhn_B Nucleoporin NUP120; pro 94.7 0.36 1.2E-05 42.6 11.4 89 3-91 848-964 (1139)
257 1qsa_A Protein (soluble lytic 93.3 1.7 5.9E-05 35.7 12.1 50 43-92 297-346 (618)
258 1qsa_A Protein (soluble lytic 93.0 2.6 8.9E-05 34.6 12.6 115 7-122 224-347 (618)
259 2wpv_A GET4, UPF0363 protein Y 92.9 2.2 7.4E-05 31.8 11.4 25 93-117 133-157 (312)
260 4gq2_M Nucleoporin NUP120; bet 92.8 2.2 7.6E-05 37.0 12.5 84 38-125 817-928 (950)
261 3lpz_A GET4 (YOR164C homolog); 92.3 2.7 9.4E-05 31.6 12.5 25 93-117 135-159 (336)
262 4b4t_S RPN3, 26S proteasome re 92.0 2.5 8.5E-05 33.9 10.9 60 3-64 237-303 (523)
263 4gq2_M Nucleoporin NUP120; bet 91.7 6.2 0.00021 34.2 14.2 83 6-92 819-924 (950)
264 1zbp_A Hypothetical protein VP 89.1 4 0.00014 29.7 8.9 53 40-92 6-58 (273)
265 3esl_A Checkpoint serine/threo 87.8 5.2 0.00018 27.7 12.9 91 52-146 58-164 (202)
266 3re2_A Predicted protein; meni 87.7 5.8 0.0002 30.2 9.1 61 84-144 276-349 (472)
267 1wy6_A Hypothetical protein ST 86.7 4.6 0.00016 26.3 7.1 78 11-92 75-152 (172)
268 3u84_A Menin; MLL, JUND, ledgf 86.6 6.5 0.00022 30.5 9.1 61 84-144 298-371 (550)
269 3ax2_A Mitochondrial import re 86.4 2.2 7.5E-05 24.2 5.0 29 36-64 22-50 (73)
270 2wpv_A GET4, UPF0363 protein Y 85.4 9.5 0.00033 28.4 10.8 26 63-88 132-157 (312)
271 2v6y_A AAA family ATPase, P60 82.1 5.5 0.00019 23.1 6.7 16 75-90 21-36 (83)
272 2rpa_A Katanin P60 ATPase-cont 81.9 1.1 3.6E-05 25.9 2.4 24 3-26 18-41 (78)
273 4gq4_A Menin; tumor suppressor 80.7 16 0.00055 28.4 9.0 33 93-125 302-334 (489)
274 3t5x_A PCI domain-containing p 77.4 6.5 0.00022 27.2 5.8 29 3-31 20-48 (203)
275 3lpz_A GET4 (YOR164C homolog); 77.3 21 0.00071 26.9 12.0 80 29-121 134-214 (336)
276 3ax2_A Mitochondrial import re 76.7 5.4 0.00019 22.6 4.3 30 97-126 20-49 (73)
277 1om2_A Protein (mitochondrial 76.1 3.7 0.00013 24.6 3.6 26 3-28 26-51 (95)
278 1wy6_A Hypothetical protein ST 75.4 14 0.00049 24.1 10.5 77 44-124 74-155 (172)
279 3t5v_B Nuclear mRNA export pro 73.3 7.9 0.00027 30.5 5.9 81 46-126 141-253 (455)
280 2crb_A Nuclear receptor bindin 73.1 5.2 0.00018 23.7 3.6 22 4-25 22-43 (97)
281 3t5x_A PCI domain-containing p 72.6 11 0.00038 26.0 6.0 34 32-65 15-48 (203)
282 2wvi_A Mitotic checkpoint seri 71.6 19 0.00066 23.9 10.0 70 66-144 67-143 (164)
283 2ijq_A Hypothetical protein; s 70.9 20 0.00068 23.8 8.5 65 35-122 36-103 (161)
284 2crb_A Nuclear receptor bindin 69.5 11 0.00036 22.4 4.4 27 66-92 16-42 (97)
285 4b4t_O 26S proteasome regulato 68.6 37 0.0013 26.0 11.4 85 38-122 83-197 (393)
286 3esl_A Checkpoint serine/threo 68.4 26 0.0009 24.2 8.5 74 18-92 58-142 (202)
287 2cfu_A SDSA1; SDS-hydrolase, l 66.9 12 0.00042 30.9 6.0 55 30-84 448-502 (658)
288 4a1g_A Mitotic checkpoint seri 66.2 25 0.00085 23.1 12.7 60 82-144 82-148 (152)
289 2ijq_A Hypothetical protein; s 65.9 26 0.00089 23.2 7.1 56 4-59 39-103 (161)
290 3re2_A Predicted protein; meni 64.9 45 0.0015 25.6 8.8 63 30-92 254-323 (472)
291 2rpa_A Katanin P60 ATPase-cont 64.2 9.7 0.00033 21.9 3.5 25 68-92 15-39 (78)
292 4ady_A RPN2, 26S proteasome re 63.4 73 0.0025 27.8 10.0 118 3-121 461-587 (963)
293 2w2u_A Hypothetical P60 katani 62.7 10 0.00035 22.0 3.6 15 13-27 16-30 (83)
294 1om2_A Protein (mitochondrial 62.3 10 0.00035 22.7 3.5 29 98-126 24-52 (95)
295 3t5v_B Nuclear mRNA export pro 62.2 13 0.00044 29.3 5.0 81 12-92 141-247 (455)
296 4aez_C MAD3, mitotic spindle c 61.6 39 0.0013 23.7 10.1 123 13-144 51-197 (223)
297 4a5x_A MITD1, MIT domain-conta 60.9 11 0.00039 21.9 3.6 13 14-26 14-26 (86)
298 2ynq_A ESSB; membrane protein, 57.6 38 0.0013 22.4 7.1 79 5-89 16-97 (161)
299 2w2u_A Hypothetical P60 katani 56.0 27 0.00093 20.1 7.2 20 73-92 27-46 (83)
300 3u84_A Menin; MLL, JUND, ledgf 54.8 75 0.0026 24.9 8.7 43 50-92 298-345 (550)
301 2cfu_A SDSA1; SDS-hydrolase, l 53.1 38 0.0013 28.0 6.7 41 68-108 452-497 (658)
302 1wfd_A Hypothetical protein 15 52.0 18 0.00063 21.4 3.5 16 12-27 11-26 (93)
303 2vkj_A TM1634; membrane protei 50.8 29 0.001 20.4 4.0 24 4-27 60-83 (106)
304 2v6x_A Vacuolar protein sortin 50.8 20 0.00069 20.7 3.5 32 13-59 10-41 (85)
305 3myv_A SUSD superfamily protei 49.1 45 0.0016 26.0 6.3 46 14-59 165-218 (454)
306 4b4t_O 26S proteasome regulato 47.5 93 0.0032 23.8 9.6 87 6-92 85-196 (393)
307 4gq4_A Menin; tumor suppressor 47.1 1E+02 0.0035 24.1 9.0 63 30-92 261-330 (489)
308 3mkr_B Coatomer subunit alpha; 46.8 88 0.003 23.3 10.9 92 35-126 106-230 (320)
309 3lew_A SUSD-like carbohydrate 46.8 69 0.0024 25.4 7.1 46 14-59 175-231 (495)
310 3kez_A Putative sugar binding 46.0 48 0.0016 25.9 6.0 46 14-59 171-224 (461)
311 3mkr_B Coatomer subunit alpha; 44.7 79 0.0027 23.6 6.5 24 37-60 22-45 (320)
312 2cpt_A SKD1 protein, vacuolar 43.8 25 0.00086 21.8 3.3 32 13-59 15-46 (117)
313 3mcx_A SUSD superfamily protei 40.8 55 0.0019 25.7 5.6 46 14-59 177-230 (477)
314 2wvi_A Mitotic checkpoint seri 38.6 85 0.0029 20.8 9.7 43 50-92 79-123 (164)
315 3bqo_A Telomeric repeat-bindin 36.9 29 0.00099 23.9 2.9 44 38-81 124-167 (211)
316 3myv_A SUSD superfamily protei 36.2 90 0.0031 24.3 6.1 29 94-122 190-218 (454)
317 2ynq_A ESSB; membrane protein, 35.4 96 0.0033 20.5 7.1 82 36-120 13-99 (161)
318 3mcx_A SUSD superfamily protei 34.5 1.1E+02 0.0038 23.9 6.5 29 94-122 202-230 (477)
319 2yhe_A SEC-alkyl sulfatase; hy 40.0 8.7 0.0003 31.9 0.0 44 4-47 468-511 (668)
320 3kez_A Putative sugar binding 33.6 1E+02 0.0036 24.0 6.1 29 94-122 196-224 (461)
321 3lew_A SUSD-like carbohydrate 32.4 1.3E+02 0.0045 23.8 6.6 27 96-122 205-231 (495)
322 3jq1_A SUSD superfamily protei 31.6 87 0.003 24.7 5.4 46 14-59 155-208 (481)
323 3hdx_A SUSD homolog, SUSD supe 30.9 1.6E+02 0.0053 23.1 6.8 29 32-60 198-226 (478)
324 2npu_A FKBP12-rapamycin comple 30.7 1E+02 0.0035 19.4 5.7 18 6-23 49-66 (126)
325 3bqo_A Telomeric repeat-bindin 30.7 80 0.0027 21.8 4.3 30 100-129 123-152 (211)
326 3bu8_A Telomeric repeat-bindin 30.2 1.4E+02 0.0049 20.9 8.5 48 38-85 121-168 (235)
327 3snx_A SUSD homolog, putative 29.9 1.3E+02 0.0044 23.5 6.1 31 93-123 320-351 (460)
328 3qnk_A Putative lipoprotein; a 29.0 1.5E+02 0.005 23.6 6.3 27 33-59 184-210 (517)
329 2g9p_A Antimicrobial peptide l 28.3 40 0.0014 14.0 1.6 11 197-207 2-12 (26)
330 3lxu_X Tripeptidyl-peptidase 2 28.1 3.6E+02 0.012 24.8 12.4 33 10-42 1120-1152(1354)
331 4ady_A RPN2, 26S proteasome re 26.7 1.8E+02 0.0061 25.5 6.6 89 2-92 495-587 (963)
332 3mv2_A Coatomer subunit alpha; 25.3 2.1E+02 0.0073 21.3 11.9 25 102-126 215-239 (325)
333 2ca5_A MXIH; transport protein 24.9 64 0.0022 18.7 2.6 33 109-141 25-57 (85)
334 2g0u_A Type III secretion syst 24.7 63 0.0021 19.1 2.6 35 110-144 32-66 (92)
335 3o10_A Sacsin; all-helical dom 22.7 1.3E+02 0.0043 19.2 4.1 14 11-24 4-17 (141)
336 3efz_A 14-3-3 protein; 14-3-3, 22.6 1.8E+02 0.0062 21.0 5.1 18 106-123 209-226 (268)
337 3i4g_A SUSD-like carbohydrate 21.0 2.4E+02 0.0082 22.5 6.2 27 33-59 200-226 (528)
338 3bu8_A Telomeric repeat-bindin 20.6 2.3E+02 0.0078 19.9 7.3 25 102-126 122-146 (235)
339 3ubw_A 14-3-3E, 14-3-3 protein 20.3 2.5E+02 0.0085 20.2 14.5 27 3-29 37-63 (261)
No 1
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.89 E-value=2.3e-23 Score=141.25 Aligned_cols=127 Identities=8% Similarity=0.033 Sum_probs=116.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.||.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCcc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEA-VQMVLNMTNNKR 128 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~-~~~al~~~p~~~ 128 (207)
++|+..|++++ +..+++.+|.++...|++++|... ++++++++|+++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 99999999999 889999999999999999887765 589999999743
No 2
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.6e-22 Score=166.31 Aligned_cols=127 Identities=17% Similarity=0.296 Sum_probs=124.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
+||.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
++|++.|++++ +..++.++|.++...|++++|+.+|+++++++|++.
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999 889999999999999999999999999999999843
No 3
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=1.2e-21 Score=136.62 Aligned_cols=144 Identities=13% Similarity=0.175 Sum_probs=131.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|.++...|+|++|+.+|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++...+++
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhccc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGRT 145 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~ 145 (207)
+.|...+.+++ +..++..+|.++...|++++|+..|+++++++|++. ..++.++...+.+++++
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999 788999999999999999999999999999999843 34455555555555554
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=8.2e-22 Score=141.42 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=89.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh---
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK--- 78 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--- 78 (207)
.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred --------cCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 79 --------KKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 79 --------~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
|++++|+..|++++ +..++..+|.++...|++++|+..|+++++++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 77777777777777 56667777777777777777777777777666
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.7e-21 Score=138.73 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=126.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHccCCCCHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKA-----------RDVEKALDGFTRAVQLDPDNGEAWNN 70 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~ 70 (207)
++|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.+|.+
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 123 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5789999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc---cHHHHHHHHHHHhc
Q 040667 71 IACLHMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI---DTELLERIVLDLEG 143 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~ 143 (207)
+|.++...|++++|+..|++++ +..++..+|.++...|++++|+..|+++++++|++.. .++.+....+.+++
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999999999 7889999999999999999999999999999998432 23333333444554
Q ss_pred cc
Q 040667 144 RT 145 (207)
Q Consensus 144 ~~ 145 (207)
++
T Consensus 204 A~ 205 (217)
T 2pl2_A 204 AA 205 (217)
T ss_dssp --
T ss_pred HH
Confidence 43
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.85 E-value=1.9e-20 Score=144.86 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=122.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARD-VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
.+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..+|+++|.++..+|+
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 467888999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
+++|+..|++++ +..+|+++|.++...|++++|+.+|+++++++|++..
T Consensus 182 ~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 182 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 999999999999 8899999999999999999999999999999998443
No 7
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.85 E-value=3.2e-20 Score=121.99 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=93.5
Q ss_pred HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHH
Q 040667 23 AMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLW 97 (207)
Q Consensus 23 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~ 97 (207)
+..++|+....+..+|..+++.|+|++|+..|+++++++|.++.+|.++|.++..+|++++|+..|++++ +..+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 3457888888888999999999999999999999999999999999999999999999999999999998 78889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
+.+|.++...|++++|+..|+++++++|++..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999999999999999999997443
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.85 E-value=2e-20 Score=123.03 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=98.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|..++..|+|++|+.+|++++..+|.++.++..+|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHH
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVA 104 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~ 104 (207)
++|+..|++++ +..++..++.|+
T Consensus 98 ~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999 777888777663
No 9
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=5.8e-20 Score=130.90 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=93.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHH----------------HHHHHHHccCHHHHHHHHHHHHccCCCCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFA----------------LGAAALKARDVEKALDGFTRAVQLDPDNGE 66 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 66 (207)
.|..++..|++++|+.+|++++..+|+++.+++. +|.++...|++++|+..|+++++++|+++.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 89 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD 89 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 4667777788888888888888888877777777 788888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHH-----------------------------------HHH
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHV-----------------------------------ALD 106 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~-----------------------------------~~~ 106 (207)
++.++|.++...|++++|+..|++++ +..+++.+|.+ +..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~ 169 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF 169 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 88888888888888888888888777 44455555544 444
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 040667 107 VGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~ 126 (207)
.|++++|+.+|+++++++|+
T Consensus 170 ~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 170 TTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHTHHHHHHHHHHHTTTSCC
T ss_pred ccCHHHHHHHHHHHHHhCCC
Confidence 55677788888888888875
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=1.2e-19 Score=126.42 Aligned_cols=125 Identities=14% Similarity=0.236 Sum_probs=122.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|...+.+++.+.|.++.++..+|.++...|++
T Consensus 44 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 44 KLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ +..+|.++|.++...|++++|+.+|+++++++|+
T Consensus 124 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 124 DKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 99999999999 8899999999999999999999999999999996
No 11
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.85 E-value=1.6e-19 Score=130.04 Aligned_cols=125 Identities=16% Similarity=0.144 Sum_probs=120.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSS-LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
.+|..++..|+|++|+.+|++++..+| .+..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|+
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHccc
Confidence 478999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 81 SKEAFIAFKEAL-----YW-------QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++|+..|++++ +. .++..+|.++...|++++|+..|+++++++|+
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999999999999 44 67999999999999999999999999999996
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=1.7e-21 Score=131.87 Aligned_cols=118 Identities=15% Similarity=0.051 Sum_probs=108.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
.+++-.+-..+++++..+|+++.+++.+|.+++..|++++|+..|++++.++|.++.+|.++|.++...|++++|+..|+
T Consensus 15 l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp HHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 33444455567778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 90 EAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 90 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+++ ++.+|+++|.++...|++++|+.+|++++++.|+.
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999 78999999999999999999999999999999963
No 13
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=1.2e-19 Score=150.51 Aligned_cols=125 Identities=22% Similarity=0.377 Sum_probs=121.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|.++...|++++|+.+|+++++++|++..+++++|.++..+|++++|+..|+++++++|+++.+|.++|.++..+|++
T Consensus 48 nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ +..++.++|.++...|++++|.+.+++++++.|+
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 99999999999 8899999999999999999999999999988764
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.82 E-value=1e-19 Score=122.92 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=110.6
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----
Q 040667 17 KILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---- 92 (207)
Q Consensus 17 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 92 (207)
-..|++++..+|++..+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+..|++++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHH
Q 040667 93 -YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLER 136 (207)
Q Consensus 93 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 136 (207)
+..+++++|.++...|++++|+.+|+++++++|+++........
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 78899999999999999999999999999999976555444333
No 15
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=6.1e-19 Score=126.93 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=119.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-------HHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG-------EAWNNIACL 74 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~ 74 (207)
.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.+.|+++ .++..+|.+
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 47 NCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence 4789999999999999999999999999999999999999999999999999999999999998 679999999
Q ss_pred HHHhcCHHHHHHHHHHHh----c---HHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHH
Q 040667 75 HMIKKKSKEAFIAFKEAL----Y---WQLWENYSHVALDVGNI---------------------------GQALEAVQMV 120 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~----~---~~~~~~l~~~~~~~~~~---------------------------~~A~~~~~~a 120 (207)
+...|++++|+..|++++ + ..++..+|.++...|+. ++|+.+++++
T Consensus 127 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 206 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEA 206 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 2 36899999999999988 9999999999
Q ss_pred HhcCCCcc
Q 040667 121 LNMTNNKR 128 (207)
Q Consensus 121 l~~~p~~~ 128 (207)
++++|++.
T Consensus 207 ~~l~p~~~ 214 (228)
T 4i17_A 207 VTLSPNRT 214 (228)
T ss_dssp HHHCTTCH
T ss_pred hhcCCCCH
Confidence 99999743
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.82 E-value=2.7e-19 Score=138.51 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=120.2
Q ss_pred chHHHHHhcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 2 SLARSAYNRGG-YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 2 ~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
++|.++...|+ +++|+.+|++++..+|++..+|+.+|.++..+|++++|+..|++++.++|++..+|.++|.++...|+
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 57889999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhcCCCcc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALD-VGNIGQA-----LEAVQMVLNMTNNKR 128 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~al~~~p~~~ 128 (207)
+++|+..|++++ +..+|+++|.++.. .|.+++| +.+|.++++++|++.
T Consensus 216 ~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~ 274 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 274 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH
Confidence 999999999999 88999999999999 5555888 599999999999843
No 17
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=3.4e-18 Score=125.69 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=126.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.++...|++
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 48 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----c---------------------------------------------------------------
Q 040667 82 KEAFIAFKEAL-----Y--------------------------------------------------------------- 93 (207)
Q Consensus 82 ~~A~~~~~~~~-----~--------------------------------------------------------------- 93 (207)
++|+..|++++ +
T Consensus 128 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 99988888775 1
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcccc
Q 040667 94 -------WQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 94 -------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 146 (207)
..++..+|.++...|++++|...|+++++.+|++...........+.+.+++.
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC--
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHH
Confidence 46788899999999999999999999999999877777777778888888864
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=8.8e-19 Score=118.51 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=101.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.+|+..|+|++|+.+|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHh-----cHHHHHHHHHHHHHcCC
Q 040667 82 KEAFIA-FKEAL-----YWQLWENYSHVALDVGN 109 (207)
Q Consensus 82 ~~A~~~-~~~~~-----~~~~~~~l~~~~~~~~~ 109 (207)
++|.+. +++++ +..++...+.++...|+
T Consensus 116 ~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 116 DGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 988776 58888 88889999999888775
No 19
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.81 E-value=3.9e-18 Score=111.80 Aligned_cols=125 Identities=26% Similarity=0.491 Sum_probs=120.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.++++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..+++++ +..++..+|.++...|++++|...+.++++.+|+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999998 6788999999999999999999999999999885
No 20
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=1.8e-18 Score=137.66 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=123.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKA---------RDVEKALDGFTRAVQLDPDNGEAWNNIA 72 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 72 (207)
.+|.++...|++++|+.+|++++..+|+ ..++..+|.++... |++++|+..|+++++++|+++.+|.++|
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4788889999999999999999999987 78888999999999 9999999999999999999999999999
Q ss_pred HHHHHh--------cCHHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHH
Q 040667 73 CLHMIK--------KKSKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTEL 133 (207)
Q Consensus 73 ~~~~~~--------~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 133 (207)
.++... |++++|+..|++++ +..+|+++|.++...|++++|+..|+++++++|+.. ..++.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999998 99999999999998 457899999999999999999999999999999844 34444
Q ss_pred HHHHHHHHhcccc
Q 040667 134 LERIVLDLEGRTS 146 (207)
Q Consensus 134 ~~~~~~~~~~~~~ 146 (207)
+....+.+++++.
T Consensus 301 ~~~~lg~~~eAi~ 313 (474)
T 4abn_A 301 LLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555566666553
No 21
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=8.2e-18 Score=116.28 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=113.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.++++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence 46888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..+++++ +..++..+|.++...|++++|+.++.++++..|..
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 99999999988 67888999999999999999999999999988863
No 22
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=5.2e-18 Score=124.59 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=116.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLH 75 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~ 75 (207)
.+|..++..|+|++|+..|++++..+|++ +.+++.+|.+++..|++++|+..|++++...|++ +.+++.+|.++
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 46889999999999999999999999998 8899999999999999999999999999998854 67899999999
Q ss_pred HH--------hcCHHHHHHHHHHHh-----cH---HHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 76 MI--------KKKSKEAFIAFKEAL-----YW---QLW--------------ENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 76 ~~--------~~~~~~A~~~~~~~~-----~~---~~~--------------~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.. .|++++|+..|++++ +. .+. +.+|.++...|++++|+..|+++++..|
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99 999999999999999 22 222 8899999999999999999999999999
Q ss_pred Cccc
Q 040667 126 NKRI 129 (207)
Q Consensus 126 ~~~~ 129 (207)
+...
T Consensus 180 ~~~~ 183 (261)
T 3qky_A 180 DTPW 183 (261)
T ss_dssp TSTT
T ss_pred CCch
Confidence 8443
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=7.8e-18 Score=120.03 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=118.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh-cC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK-KK 80 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-~~ 80 (207)
.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++...|.+..++..+|.++... |+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 81 SKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 81 ~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+++|+..|++++ ...++..+|.++...|++++|+.++.++++..|..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999998 36889999999999999999999999999999873
No 24
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=1.6e-18 Score=117.24 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=89.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+.+|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+|+++|.++..+|++
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|+..|++++
T Consensus 121 ~eA~~~~~~al 131 (151)
T 3gyz_A 121 LKAKECFELVI 131 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 25
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=8.9e-19 Score=117.29 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=105.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----
Q 040667 18 ILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----- 92 (207)
Q Consensus 18 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----- 92 (207)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 467888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHH
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELL 134 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 134 (207)
+..+++.+|.++...|++++|+.+|+++++++|+++......
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 788999999999999999999999999999999755444433
No 26
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.79 E-value=7.1e-18 Score=130.35 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=104.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.++...|++
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ +..++..+|.++...|++++|+..++++++..|+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 88888888887 6677888888888888888888888888888876
No 27
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=3.1e-18 Score=118.42 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=121.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 47 HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
++|+..+++++ +..++..+|.++...|++++|..++.++++..|+..
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999 778999999999999999999999999999988743
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=1.2e-17 Score=120.68 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=113.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+.++++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 46888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..+++++ +..++..+|.++...|++++|+..+.++++..|+.
T Consensus 142 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999988 67888999999999999999999999999988863
No 29
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.79 E-value=4.7e-18 Score=117.64 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=112.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHhcCH--HH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL-HMIKKKS--KE 83 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~--~~ 83 (207)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 84 AFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 84 A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
|+..|++++ +..++..+|.++...|++++|+..|.++++.+|++.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999 788999999999999999999999999999999854
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=7.9e-18 Score=121.58 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=95.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp --------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ +..++..+|.++...|++++|+..+.++++..|+
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 88888888888 6778888888888888888888888888888876
No 31
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.78 E-value=6.3e-18 Score=120.15 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=122.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|..++..|++++|+.+|++++ .| ++.+++.+|.++...|++++|+..|++++.++|.++.++.++|.++...|++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 47889999999999999999995 44 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 040667 82 KEAFIAFKEAL-----YW----------------QLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
++|+..|++++ +. .+++++|.++...|++++|+.++++++++.|+.. ...+......
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~ 165 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR--HSKIDKAMEC 165 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--GGHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc--cchHHHHHHH
Confidence 99999999998 22 8999999999999999999999999999999742 2344444555
Q ss_pred Hhcc
Q 040667 141 LEGR 144 (207)
Q Consensus 141 ~~~~ 144 (207)
+.+.
T Consensus 166 ~~~~ 169 (213)
T 1hh8_A 166 VWKQ 169 (213)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 5443
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=8.4e-19 Score=139.55 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=128.9
Q ss_pred chHHHHHhcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh--
Q 040667 2 SLARSAYNRGGY-ETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK-- 78 (207)
Q Consensus 2 ~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-- 78 (207)
.+|..+...|+| ++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+ ..++.++|.++...
T Consensus 107 ~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 107 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhcc
Confidence 478899999999 99999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred -------cCHHHHHHHHHHHh-----cHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---C---ccccHH
Q 040667 79 -------KKSKEAFIAFKEAL-----YWQLWENYSHVALDV--------GNIGQALEAVQMVLNMTN---N---KRIDTE 132 (207)
Q Consensus 79 -------~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~p---~---~~~~~~ 132 (207)
|++++|+..|++++ +..+|..+|.++... |++++|+.+|+++++++| + ....++
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 99999999999999 889999999999999 999999999999999999 5 233444
Q ss_pred HHHHHHHHHhccc
Q 040667 133 LLERIVLDLEGRT 145 (207)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (207)
.++...+.+++++
T Consensus 266 ~~~~~~g~~~~A~ 278 (474)
T 4abn_A 266 TLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 4444455555554
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=7.1e-18 Score=129.28 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=54.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.++...|+++
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|+..|++++
T Consensus 151 ~A~~~~~~al 160 (365)
T 4eqf_A 151 DACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 34
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=1.2e-17 Score=129.16 Aligned_cols=124 Identities=21% Similarity=0.263 Sum_probs=79.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.++|++..++..+|.++...|+++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..|++++ +..++..+|.++...|++++|+..|+++++++|+
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6666666665 4556666666666666666666666666666665
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=4.4e-18 Score=130.45 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=115.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL--YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
.+|..+...|++++|+.+|++++..+|+ ++.++..+|.++...|++++|+..|++++...|.++.+|..+|.++...|
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4588999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++++|+..|++++ +..++..+|.++...|++++|+.+|++++++.|+
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999 7889999999999999999999999999999987
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.7e-18 Score=123.66 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=113.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHc---------------
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY-------PDGWFALGAAALKARDVEKALDGFTRAVQ--------------- 59 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--------------- 59 (207)
.+|.++...|++++|+.++++++...|++ +.++..+|.++...|++++|+..|++++.
T Consensus 43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 122 (258)
T 3uq3_A 43 NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHH
Confidence 47888999999999999999999988876 68889999999999999999999999998
Q ss_pred -----------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 60 -----------LDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 60 -----------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
.+|.++.++..+|.++...|++++|+..|++++ +..++..+|.++...|++++|+.++.++++.
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666777889999999999999999999999998 7888999999999999999999999999999
Q ss_pred CCCc
Q 040667 124 TNNK 127 (207)
Q Consensus 124 ~p~~ 127 (207)
+|+.
T Consensus 203 ~~~~ 206 (258)
T 3uq3_A 203 DPNF 206 (258)
T ss_dssp CTTC
T ss_pred CHHH
Confidence 9873
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-17 Score=121.47 Aligned_cols=123 Identities=12% Similarity=0.182 Sum_probs=116.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMA--------------------------LSSLYPDGWFALGAAALKARDVEKALDGFT 55 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 55 (207)
.+|.++...|++++|+.+|++++. .+|.++.++..+|.++...|++++|+..|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 478888999999999999999999 566677889999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 56 RAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 56 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+++...|.++.++..+|.++...|++++|+..|++++ +..++..+|.++...|++++|..+++++++++
T Consensus 164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 78899999999999999999999999999999
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=1.4e-17 Score=122.24 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=116.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH--------ccCHHHHHHHHHHHHccCCCCHHHH--
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALK--------ARDVEKALDGFTRAVQLDPDNGEAW-- 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-- 68 (207)
.+|.+++..|+|++|+..|++++..+|++ +.+++.+|.++.. .|++++|+..|++++...|+++.++
T Consensus 57 ~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 57 YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 47899999999999999999999998855 5689999999999 9999999999999999999987665
Q ss_pred ---------------HHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHHHHHc----------CCHHHHHH
Q 040667 69 ---------------NNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHVALDV----------GNIGQALE 115 (207)
Q Consensus 69 ---------------~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~----------~~~~~A~~ 115 (207)
+.+|.+|...|++++|+..|++++ ...+++.+|.++... |++++|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 888999999999999999999999 356899999999977 89999999
Q ss_pred HHHHHHhcCCCcc
Q 040667 116 AVQMVLNMTNNKR 128 (207)
Q Consensus 116 ~~~~al~~~p~~~ 128 (207)
.|+++++..|+..
T Consensus 217 ~~~~~~~~~p~~~ 229 (261)
T 3qky_A 217 LYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHCTTCT
T ss_pred HHHHHHHHCCCCh
Confidence 9999999999854
No 39
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.5e-18 Score=142.33 Aligned_cols=124 Identities=11% Similarity=0.022 Sum_probs=121.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++ +..|++++ +..+++++|.++...|++++|+..|+++++++|+
T Consensus 518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 99 99999999 7889999999999999999999999999999998
No 40
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.77 E-value=6.4e-18 Score=111.07 Aligned_cols=95 Identities=24% Similarity=0.232 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLWEN 99 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~ 99 (207)
.++..+|.++++.|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|++++ ...++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666666 1346778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 100 YSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 100 l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|.++...|++++|+.+|++++...|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 888899999999999999999988774
No 41
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.1e-17 Score=124.31 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=104.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+.+|++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 35677777777777777777777777777777777777777777777788888877777777777777888888888888
Q ss_pred HHHHHHHHHHh--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhcc
Q 040667 82 KEAFIAFKEAL--------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGR 144 (207)
Q Consensus 82 ~~A~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~ 144 (207)
++|+..+++++ ...++..+|.++...|++++|+.+++++++++|+.. ..++.+....+.++++
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 88888777777 135777788888888888888888888887777632 2333333344444444
Q ss_pred c
Q 040667 145 T 145 (207)
Q Consensus 145 ~ 145 (207)
+
T Consensus 290 ~ 290 (330)
T 3hym_B 290 V 290 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=1.3e-17 Score=121.42 Aligned_cols=125 Identities=23% Similarity=0.269 Sum_probs=108.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 46778888888889999998888888888888888888888889999999999988888888888888888888888899
Q ss_pred HHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ ...++..+|.++...|++++|+.++.++++..|.
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 99988888886 5677888888888888888898888888888886
No 43
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.77 E-value=3.2e-17 Score=111.67 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=111.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 82 KEAFIAFKEAL-----YWQLW--ENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~--~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
++|+..|++++ +..++ ...+..+...|++++|+..+.++..+.
T Consensus 98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 99999999999 55566 444555888899999999998876543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=8.5e-17 Score=116.99 Aligned_cols=126 Identities=15% Similarity=0.096 Sum_probs=120.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ--LDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~ 79 (207)
.+|.++...|++++|+.++++++..+|.+..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999999999999999999999999999999999 88889999999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++++|+..|++++ +..++..+|.++...|++++|..++.++++..|..
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 9999999999999 68899999999999999999999999999999873
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=8.7e-17 Score=114.57 Aligned_cols=125 Identities=11% Similarity=-0.016 Sum_probs=119.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHh
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKA-RDVEKALDGFTRAVQ--LDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 78 (207)
.+|.++...|++++|+.++++++..+|.+..++..+|.++... |++++|+..+++++. ..|.+..++..+|.++...
T Consensus 47 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 126 (225)
T 2vq2_A 47 VRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc
Confidence 4788999999999999999999999999999999999999999 999999999999999 6677789999999999999
Q ss_pred cCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Q 040667 79 KKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN-N 126 (207)
Q Consensus 79 ~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~ 126 (207)
|++++|+..|++++ +..++..+|.++...|++++|...++++++..| .
T Consensus 127 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (225)
T 2vq2_A 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999 688999999999999999999999999999999 6
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.9e-17 Score=121.73 Aligned_cols=125 Identities=10% Similarity=0.107 Sum_probs=108.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEAWNNIACLHMI 77 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~ 77 (207)
.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|.++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999999888999999999999999999999999988 4433 4458899999999
Q ss_pred hcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 78 KKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
.|++++|+..|++++ +..++..+|.++...|++++|+.+++++++.+|..
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 999999999999988 67788999999999999999999999999888873
No 47
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.76 E-value=2.5e-17 Score=108.26 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=87.2
Q ss_pred CchHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-------HHHHHHHHH
Q 040667 1 RSLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN-------GEAWNNIAC 73 (207)
Q Consensus 1 r~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~ 73 (207)
+++|..++..|+|++|+.+|++++.++|+++.++.++|.++..+|++++|+..++++++++|.+ +.++.++|.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999998865 357899999
Q ss_pred HHHHhcCHHHHHHHHHHHh
Q 040667 74 LHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 74 ~~~~~~~~~~A~~~~~~~~ 92 (207)
++...|++++|++.|++++
T Consensus 92 ~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999988
No 48
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=5.5e-17 Score=116.73 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=113.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH---HHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE---AWNNIACLH 75 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~ 75 (207)
.+|..++..|+|++|+..|++++...|.++ .+++.+|.+++..|++++|+..|++++...|+++. +++.+|.++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 468899999999999999999999999764 68999999999999999999999999999998864 789999998
Q ss_pred HH------------------hcCHHHHHHHHHHHh-----cH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 040667 76 MI------------------KKKSKEAFIAFKEAL-----YW-----------------QLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 76 ~~------------------~~~~~~A~~~~~~~~-----~~-----------------~~~~~l~~~~~~~~~~~~A~~ 115 (207)
.. .|++++|+..|++++ +. .....+|.++...|++++|+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 87 578999999999999 11 122678999999999999999
Q ss_pred HHHHHHhcCCCcc
Q 040667 116 AVQMVLNMTNNKR 128 (207)
Q Consensus 116 ~~~~al~~~p~~~ 128 (207)
.|+++++..|+..
T Consensus 169 ~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 169 RVEGMLRDYPDTQ 181 (225)
T ss_dssp HHHHHHHHSTTSH
T ss_pred HHHHHHHHCcCCC
Confidence 9999999999854
No 49
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.9e-17 Score=122.33 Aligned_cols=125 Identities=17% Similarity=0.119 Sum_probs=103.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR-DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++.++...|++++|+.++++++..+|+++.++..+|.++...| ++++|+..|++++..+|.++.+|..+|.++...|++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 5667777888888888888888888888888888888888888 888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..|++++ ...++..+|.++...|++++|+..++++++..|++
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 88888888888 45677778888888888888888888888888873
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=7.6e-17 Score=105.40 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|+|++|+.+|++++..+|+++.++..+|.++..+|++++|+..|++++.++|+++.++..+|.++...|+++
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|+..|++++
T Consensus 90 ~A~~~~~~al 99 (126)
T 3upv_A 90 SALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 51
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=4.2e-17 Score=124.30 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=114.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---------------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE 66 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 66 (207)
++|..++..|+|++|+.+|++++..+|++ ..++.++|.++..+|++++|+..|++++.++|+++.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 57899999999999999999999999998 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQA-LEAVQMVLNM 123 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~ 123 (207)
+++++|.++..+|++++|+..|++++ +..++..++.++...|++++| ...|.+++..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 788999999999999999998 5577777654
No 52
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=5.7e-17 Score=131.60 Aligned_cols=126 Identities=12% Similarity=0.035 Sum_probs=118.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++
T Consensus 28 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 28 MLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDV---GNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..|++++ +..++..+|.++... |++++|...++++++.+|+.
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999999998 778899999999999 99999999999999999874
No 53
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=3.6e-17 Score=125.11 Aligned_cols=125 Identities=26% Similarity=0.333 Sum_probs=118.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL--YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
.+|..+ ..|++++|+.+|++++..+|. ++.++..+|.++...|++++|+..|++++.+.|.++.++..+|.++...|
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 356555 899999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++++|+..|++++ +..++..+|.++...|++++|+..|++++++.|+.
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999 78899999999999999999999999999999874
No 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.4e-16 Score=121.84 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=56.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.++...|+++
T Consensus 70 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|+..|++++
T Consensus 150 ~A~~~~~~~~ 159 (368)
T 1fch_A 150 QACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 55
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5e-17 Score=106.28 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHH
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSH 102 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~ 102 (207)
|..+..+..+|..++..|++++|+..|++++.++|.++.+|.++|.++...|++++|+..|++++ +..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999 7889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 040667 103 VALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~~ 124 (207)
++...|++++|+..|+++++++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999
No 56
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=2.1e-17 Score=114.47 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=112.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH-HhcC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM-IKKK 80 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~~~ 80 (207)
.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+.. ..+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc
Confidence 3678899999999999999999999999999999999999999999999999999999999 8877776665533 3445
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
..+|+..|++++ +..+++.+|.++...|++++|+..|.++++.+|+.
T Consensus 90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 567899999999 78999999999999999999999999999999863
No 57
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.2e-16 Score=121.37 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=85.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh---c-----HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL---Y-----WQLWENY------------SHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~---~-----~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..|++++ . ..++..+ |.++...|++++|+..+.++++..|.
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7777777766 1 1223323 55666666666666666666666665
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.4e-16 Score=121.01 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=114.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC---CCHHHHHHH-------
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDP---DNGEAWNNI------- 71 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l------- 71 (207)
.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++...| .++.++..+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999999999999999999999999999999 888888777
Q ss_pred -----HHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 72 -----ACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 72 -----~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
|.++...|++++|+..|++++ +..++..+|.++...|++++|+..+.++++..|..
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 187 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 688899999999999999988 77889999999999999999999999999988873
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.8e-16 Score=116.45 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=114.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP----DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
.+|.+++..|++++|+.++++++. .|.++ .++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 478899999999999999999999 44443 3589999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 78 KKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
.|++++|+..|++++ +..++..+|......+++++|+..+.++++.+|+.
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999 88999999955555669999999999999999984
No 60
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.73 E-value=2e-16 Score=117.99 Aligned_cols=126 Identities=14% Similarity=0.004 Sum_probs=119.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+..+...++.
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 46888999999999999999999999999999999999999999999999999999999998777778888889999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..|++++ +..+++.+|.++...|++++|+..|.++++.+|+.
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 99999999999 88999999999999999999999999999999974
No 61
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.73 E-value=5.3e-17 Score=109.29 Aligned_cols=91 Identities=23% Similarity=0.259 Sum_probs=74.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHccCHHHHHHHHHHHHcc-------CC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL-------YPD-----GWFALGAAALKARDVEKALDGFTRAVQL-------DP 62 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p 62 (207)
++|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|+|++|+..|++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 4788999999999999999999999998 433 8999999999999999999999999999 88
Q ss_pred CCHHHH----HHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 63 DNGEAW----NNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 63 ~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+++.+| +++|.++..+|++++|+..|++++
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888 666666666666665555555554
No 62
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.73 E-value=3.2e-16 Score=102.18 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=81.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCH
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNI 110 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 110 (207)
+|+..|++++ +..++..++.++...|++
T Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 98 EAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7777777777 566777777777776654
No 63
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=3.5e-16 Score=112.55 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=113.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHH------------------ccCHHHHHHHHHHHHcc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPD---GWFALGAAALK------------------ARDVEKALDGFTRAVQL 60 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~------------------~~~~~~A~~~~~~a~~~ 60 (207)
.+|.+++..|+|++|+..|++++..+|+++. +++.+|.++.. .|++++|+..|++++..
T Consensus 46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998874 78899999886 57999999999999999
Q ss_pred CCCCHHHH-----------------HHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 61 DPDNGEAW-----------------NNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 61 ~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
.|+++.++ ..+|.++...|++++|+..|++++ ...++..+|.++...|++++|+.
T Consensus 126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 99987554 578999999999999999999999 23689999999999999999999
Q ss_pred HHHHHHhcCCC
Q 040667 116 AVQMVLNMTNN 126 (207)
Q Consensus 116 ~~~~al~~~p~ 126 (207)
.++.+....|+
T Consensus 206 ~~~~l~~~~~~ 216 (225)
T 2yhc_A 206 VAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHCCSC
T ss_pred HHHHHHhhCCC
Confidence 99999998886
No 64
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=1.2e-16 Score=106.85 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=88.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+.+|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|+..|++++
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.72 E-value=3.5e-16 Score=106.99 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHH
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSH 102 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~ 102 (207)
+.....++.+|.+++..|++++|+..|++++.++|.++.+|.++|.++...|++++|+..|++++ +..+|+.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44567788889999999999999999999999999999999999999999999999999999888 7888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 103 VALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
++...|++++|+.+|.++++++|++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 999999999999999999999998554
No 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.72 E-value=2.6e-16 Score=123.48 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=102.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh-----cH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YW---QLWENY------------SHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ +. .++..+ |.++...|++++|+..|.++++..|.
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888887 33 444433 66688888888888888888887776
No 67
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=6.3e-17 Score=131.32 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
.|++++|+.+|++++..+|++..++..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 90 EAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 90 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+++ +..++.++|.++...|++++|+..|+++++++|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999 78899999999999999999999999999999984
No 68
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.72 E-value=2.4e-16 Score=107.83 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=89.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|+|++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|++
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|+..|++++
T Consensus 96 ~~A~~~~~~al 106 (164)
T 3sz7_A 96 KGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 69
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=104.12 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=53.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHc
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDV 107 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~ 107 (207)
+|+..|++++ +..++..++.++...
T Consensus 102 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 5555555544 334444444444443
No 70
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.72 E-value=1.1e-16 Score=104.15 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=50.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.++..+|.++...|+++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|+..|++++
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 71
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.72 E-value=2.2e-17 Score=131.45 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=113.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|+|++|+.+|+++++.+|++..++..+|.++..+|++++|+..++++++++|+++.+++++|.+|..+|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHV--ALDVGNIGQALEAVQ-----------MVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~al~~~p~ 126 (207)
++|+..|++++ +..++..++.+ +...|++++|+..++ +++.++|+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999 56678888888 888999999999999 88888776
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=8.6e-17 Score=119.64 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=110.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|+|++|+.+|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh--c--------HHHH--------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 82 KEAFIAFKEAL--Y--------WQLW--------------------------ENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 82 ~~A~~~~~~~~--~--------~~~~--------------------------~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
++|+..|++++ + ..++ ..++.+ ..|++++|+..++++++.+|
T Consensus 89 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p 166 (281)
T 2c2l_A 89 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHE 166 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTS
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhcccc
Confidence 99999999998 1 1111 112222 35788999999999999999
Q ss_pred Cc
Q 040667 126 NK 127 (207)
Q Consensus 126 ~~ 127 (207)
++
T Consensus 167 ~~ 168 (281)
T 2c2l_A 167 DD 168 (281)
T ss_dssp CH
T ss_pred ch
Confidence 73
No 73
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=1.3e-16 Score=107.61 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=88.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++++|.++...|++
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|+..|++++
T Consensus 106 ~~A~~~~~~al 116 (148)
T 2vgx_A 106 AEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999988
No 74
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=7e-16 Score=115.30 Aligned_cols=127 Identities=11% Similarity=-0.013 Sum_probs=96.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHH--HHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALG--AAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
.+|.++...|++++|+..|++++..+|++.......+ .++...|++++|+..|++++...|.++.+++++|.++...|
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 3577778888888888888888888887654443333 33334577888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCcc
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQ-ALEAVQMVLNMTNNKR 128 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p~~~ 128 (207)
++++|+..|++++ +..++.++|.++...|+.++ +..+++++++++|+++
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 8888888888888 77788888888888888765 4677788888888743
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=1e-16 Score=119.83 Aligned_cols=124 Identities=9% Similarity=-0.031 Sum_probs=91.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSS------LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNN 70 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~ 70 (207)
.|.++...|+|++|+.+|.+++.+.+ ....++.++|.++..+|++++|+..|++++.+.|.. ..++.+
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36677777888888888888877642 237777888888888888888888888887776533 356777
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHh-----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 71 IACLHMIK-KKSKEAFIAFKEAL-----Y------WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 71 l~~~~~~~-~~~~~A~~~~~~~~-----~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|.+|... |++++|+.+|++++ . ..++.++|.++...|++++|+.+|++++++.|+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 78887775 88888888888777 1 345777788888888888888888888877766
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=4.1e-17 Score=135.13 Aligned_cols=138 Identities=15% Similarity=-0.089 Sum_probs=124.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 8 YNRGGYETSKILWEAAM--------ALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
...|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 56899999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---cccHHHHHHHHHHHhcccc
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK---RIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~ 146 (207)
++++|+..|++++ +..++.++|.++...|++++ +..|+++++++|++ ..+++.+....+++++++.
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999 78899999999999999999 99999999999983 3445555555555555543
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=3.5e-17 Score=120.26 Aligned_cols=122 Identities=16% Similarity=0.055 Sum_probs=113.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 7 AYNRGGYETSKILWEAAMALS----SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
....|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++.++|.++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345689999999999999974 4567789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+|+..|++++ +..++..+|.++...|++++|+.+++++++++|+..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999999999 788999999999999999999999999999999843
No 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.71 E-value=1.5e-15 Score=119.14 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=84.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHccCHHHHHHHHHHHHccCCCCHH----
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFAL------------GAAALKARDVEKALDGFTRAVQLDPDNGE---- 66 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---- 66 (207)
+|.++...|++++|+.+|++++..+|++...+..+ |.++...|++++|+..|++++...|.++.
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56666666666666666666666666666655444 66666666677777777766666666633
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
.+..+|.++...|++++|+..+++++ +..+|..+|.++...|++++|+..|+++++++|++
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 56666777777777777777777666 56667777777777777777777777777777763
No 79
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.70 E-value=3.1e-16 Score=110.51 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=104.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP----------------DGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
.+|..++..|+|++|+.+|++++...|.++ .++..+|.++...|++++|+..+++++.++|.++
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 122 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 122 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence 478899999999999999999999999887 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQAL-EAVQMVLN 122 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~ 122 (207)
.+++.+|.++..+|++++|+..|++++ +..++..++.++...++..++. ..+.+.+.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998 7788999999999888887776 44444443
No 80
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.70 E-value=1.2e-16 Score=109.10 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=74.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL------------------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD 63 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 63 (207)
.+|..++..|+|++|+.+|.+++.. +|....++.++|.++..+|++++|+..+++++.++|.
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 4788889999999999999999988 6666678888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 64 NGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
++.+|+.+|.++..+|++++|+..|++++
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 88888888877777777777777776666
No 81
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=9.7e-16 Score=124.40 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=112.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.+|++++...|++..++..+|.++...|++++|+..|++++...|.++.+|..+|.++...|++
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 46888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----------c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL----------Y--WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~----------~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ . ..+|..+|.++...|++++|+..++++++.+|+
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 99999999887 1 678899999999999999999999999998886
No 82
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=1.4e-17 Score=126.88 Aligned_cols=135 Identities=17% Similarity=0.110 Sum_probs=118.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---------------HHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---------------GEAWNNIACL 74 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~ 74 (207)
.+++++|+..+++++...|+...++..+|.+++..|++++|+..|++++.+.|.+ ..+|.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888899999999999999999999999999999999999998 6899999999
Q ss_pred HHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhcc
Q 040667 75 HMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGR 144 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~ 144 (207)
+..+|++++|+..|++++ +..+++.+|.++...|++++|+.+|+++++++|++. ..++.+....+.+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 889999999999999999999999999999999843 3334444444444443
No 83
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.70 E-value=2.9e-16 Score=125.75 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=94.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..+...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|+++
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 56666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..|++++ +..++..+|.++...|++++|+..|.++++..|+
T Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7777777777 5667777777777777777777777777777665
No 84
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=6.6e-16 Score=115.97 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=117.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 47778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 86 IAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 86 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|++++ +..++..+|.++...|++++|+..++++++..|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9999999 7889999999999999999999999999999987
No 85
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=3e-16 Score=105.65 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHHh------
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPD-------NGE-----AWNNIACLHMIKKKSKEAFIAFKEAL------ 92 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~------ 92 (207)
...+...|..++..|+|++|+..|++++.++|+ +.. +|.++|.++..+|++++|+..|++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456789999999999999999999999999999 444 99999999999999999999999999
Q ss_pred ------cHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHH
Q 040667 93 ------YWQLW----ENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERI 137 (207)
Q Consensus 93 ------~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 137 (207)
+..+| +++|.++..+|++++|+.+|+++++++|++..-...+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45678 9999999999999999999999999999854433333333
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=3.6e-16 Score=116.79 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHHhcCHHHHHH
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD------NGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
+++|+.+|.++ |.++...|++++|+..|++++.+.+. .+.++.++|.+|..+|++++|+.
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555 44455556666666666666555321 13455566666666666666666
Q ss_pred HHHHHh-----------cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC
Q 040667 87 AFKEAL-----------YWQLWENYSHVALDV-GNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 87 ~~~~~~-----------~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p 125 (207)
+|++++ ...++.++|.++... |++++|+.+|++++++.|
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 666665 123555566666653 666666666666665554
No 87
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.69 E-value=8.7e-16 Score=124.67 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=99.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.+|++++..+|.+..+|..+|.++...|++++|+..|++++...|.+..+|..+|.++...|++
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 35677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
++|++.|++++ +..+|..+|.++...|++++|+..|+++++..
T Consensus 458 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 88888888877 67778888888888888888888888888773
No 88
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.69 E-value=1.2e-15 Score=100.86 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=79.9
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHH
Q 040667 26 LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENY 100 (207)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l 100 (207)
.+|.++..++.+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|+..|++++ +..+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4566777778888888888888888888888888888888888888888888888888888888877 67778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 101 SHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 101 ~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|.++...|++++|+..|.++++++|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888887775
No 89
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=4.5e-16 Score=116.88 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=118.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----c-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL----Y-------------WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~----~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ . ..++..+|.++...|++++|...++++++..|+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 99999999999 3 468999999999999999999999988877664
No 90
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.69 E-value=1.7e-15 Score=100.09 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=89.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|+|++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++.++|.++.++..+|.++...|++
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|+..|++++
T Consensus 94 ~~A~~~~~~a~ 104 (137)
T 3q49_B 94 DEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 91
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.68 E-value=5.6e-16 Score=124.14 Aligned_cols=126 Identities=10% Similarity=0.006 Sum_probs=115.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----------cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----------YWQLWENYSHVALDV----------GNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----------~~~~~~~l~~~~~~~----------~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..|++++ ....+..+|.++... |++++|+..|+++++.+|+.
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 99999999988 334467778888888 99999999999999999873
No 92
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=3.1e-15 Score=95.73 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=49.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|+..|++++
T Consensus 90 ~A~~~~~~~~ 99 (118)
T 1elw_A 90 EAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 93
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.68 E-value=4.7e-15 Score=95.73 Aligned_cols=96 Identities=29% Similarity=0.535 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVAL 105 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~ 105 (207)
..+++.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++ +..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666655 4555666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 040667 106 DVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|++++|..++.++++.+|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666664
No 94
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=3.3e-15 Score=111.62 Aligned_cols=121 Identities=14% Similarity=0.049 Sum_probs=81.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC--LHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~--~~~~~~~ 80 (207)
+|.++...|++++|+.++++ |++..++..+|.++..+|++++|+..+++++..+|++.......+. ++...|+
T Consensus 107 la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 45566666666666666665 5666666666677777777777777777777766666533332222 2223366
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+++|+..|++++ +..+++.+|.++...|++++|...++++++++|++.
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 777777777776 667788888888888888888888888888888733
No 95
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.67 E-value=8.7e-16 Score=121.64 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=108.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---------------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE 66 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 66 (207)
++|..++..|+|++|+.+|++++..+|.+ ..++.++|.++.++|+|++|+..|++++.++|+++.
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 352 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 57899999999999999999999999988 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEA-VQMVL 121 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~-~~~al 121 (207)
+++++|.+|..+|++++|+..|++++ +..++..++.++...++++++... |.+.+
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 778899999999999999877643 44433
No 96
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.67 E-value=1.1e-15 Score=99.48 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDV 107 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~ 107 (207)
.++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++ +..++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 578899999999999999999999999999999999999999999999999999999999 788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 040667 108 GNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~ 126 (207)
|++++|+..++++++++|+
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999996
No 97
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.67 E-value=2.6e-16 Score=110.90 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=107.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH----------------HH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG----------------EA 67 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------~~ 67 (207)
+......|+|+++.+.+.......+.....+..+|.+++..|+|++|+..|++++.+.|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34445667777777777766666666778899999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHH
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTEL 133 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 133 (207)
+.++|.++...|++++|+..|++++ +..+++.+|.++...|++++|+.+|.++++++|++......
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 161 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 9999999999999999999999999 78899999999999999999999999999999985433333
No 98
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.66 E-value=1e-15 Score=103.29 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=110.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 69 (207)
.+|..+...|++++|+.++++++...+... .++..+|.++...|++++|+..+++++.+.+.. ..++.
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 478899999999999999999999865432 478899999999999999999999999876542 56889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|.++...|++++|+..+++++ ...++..+|.++...|++++|..++.+++++...
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 3567899999999999999999999999987653
No 99
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=9.8e-15 Score=107.59 Aligned_cols=120 Identities=17% Similarity=0.273 Sum_probs=104.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
.+|..+...|++++|+.+|++++. |+++.+++.+|.++.. .+++++|+..|+++++.. ++.++..+|.++..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence 468888888999999999999888 7788888899999998 899999999999988875 78888999999988
Q ss_pred ----hcCHHHHHHHHHHHh---cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 040667 78 ----KKKSKEAFIAFKEAL---YWQLWENYSHVALD----VGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 78 ----~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p 125 (207)
.+++++|+..|++++ +..+++.+|.++.. .+++++|+.+|+++++.++
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 899999999999888 78888899999988 8899999999999888764
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=8.7e-16 Score=112.83 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=113.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALS--------SLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~ 65 (207)
.+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+..|++++.+ +|...
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 57899999999999999999999873 555678999999999999999999999999988 46677
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.++.++|.++...|++++|+..|++++ ...++..+|.++...|++++|+.++.+++++.|
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998 356889999999999999999999999998754
No 101
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-15 Score=120.56 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=98.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH
Confidence 36777777888888888888888888877777888888888888888888888888888887777888888888888888
Q ss_pred HHHHHHHHHHh-----c------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----Y------WQLWENYSHVALD---VGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~------~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ + ..++..+|.++.. .|++++|+..++++++.+|+
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 88888887777 2 2377777888877 78888888888888877776
No 102
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.8e-16 Score=122.83 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=87.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|.++...|++++|+.++++++..+|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|+++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHH
Confidence 56666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..|++++ +..++..+|.++...|++++|+..+.++++..|+
T Consensus 356 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 7777777766 4566667777777777777777777777766665
No 103
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.65 E-value=3.2e-15 Score=101.95 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcc------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQL------------------DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...+...|..++..|+|++|+..|++++.+ +|.+..+|.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457789999999999999999999999999 67777899999999999999999999999999
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 93 -----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 93 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+..+++.+|.++...|++++|+..|.++++++|++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 889999999999999999999999999999999843
No 104
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.65 E-value=1.6e-16 Score=121.27 Aligned_cols=126 Identities=12% Similarity=0.043 Sum_probs=86.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP-----------------DGWFALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
.+|..++..|+|++|+.+|++++...|++. .+++++|.++..+|+|++|+..|++++.++|++
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 263 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN 263 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 468889999999999999999999999876 389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc
Q 040667 65 GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVA-LDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
..+|+++|.+|..+|++++|+..|++++ +..++..++.+. ...+..+.+...|.+++...|++
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999999998 677888888884 45567788999999999998863
No 105
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.65 E-value=6.5e-15 Score=96.39 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=96.7
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHH
Q 040667 27 SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYS 101 (207)
Q Consensus 27 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~ 101 (207)
.|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++ +..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 102 HVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
.++...|++++|+.++.++++.+|...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999743
No 106
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.65 E-value=1.3e-14 Score=94.78 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=56.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHM 76 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~ 76 (207)
+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 45666666666666666666666666665 566666666666666666666666666666666 555555555555
Q ss_pred HhcCHHHHHHHHHHHh
Q 040667 77 IKKKSKEAFIAFKEAL 92 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~ 92 (207)
..|++++|+..|++++
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=1.1e-14 Score=108.69 Aligned_cols=122 Identities=13% Similarity=0.033 Sum_probs=74.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHH---ccCCCCH----HHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY------PDGWFALGAAALKARDVEKALDGFTRAV---QLDPDNG----EAWN 69 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~ 69 (207)
+|..+...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++ ...|++. .+++
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4455556666666666666666554332 3355666666666666666666666666 3334322 4566
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh----c-------HHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL----Y-------WQLWENYSHVALDVGNIGQA-LEAVQMVLNMT 124 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~----~-------~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~ 124 (207)
++|.+|..+|++++|+.++++++ . ..+++++|.++...|++++| ..++++++.+.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 66666666666666666666666 1 45566666666666666666 55566666544
No 108
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.65 E-value=1.5e-16 Score=126.07 Aligned_cols=135 Identities=14% Similarity=0.081 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---------------HHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---------------GEAWNNIACL 74 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~ 74 (207)
.+++++|+..|+.++...|+....+..+|.+++..|+|++|+..|++++.+.|.+ ..+|.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888889899999999999999999999999999999999988 6899999999
Q ss_pred HHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc---HHHHHHHHHHHhcc
Q 040667 75 HMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRID---TELLERIVLDLEGR 144 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~ 144 (207)
+..+|++++|+..|++++ +..+++++|.++...|++++|+..|+++++++|++... ++.+....+.+.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 88999999999999999999999999999999985433 33444444444443
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=3.5e-15 Score=111.39 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=61.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHcc-------CCCCHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQL-------DPDNGEAWN 69 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~ 69 (207)
+|..+...+++++|+.+|++++...+... .++..+|.+|...|++++|+.+|++++.. .+....+++
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 34444445555555555555555432211 13455555555555555555555555521 111233455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGN-IGQALEAVQMVLNM 123 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~ 123 (207)
++|.+|..+|++++|+.++++++ ...+++++|.++...|+ +++|+.+|++++.+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 55555555555555555555555 14455555555555553 35555555555543
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.64 E-value=3.5e-15 Score=104.85 Aligned_cols=125 Identities=11% Similarity=0.064 Sum_probs=109.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc---CCC----CHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL---DPD----NGEAW 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~----~~~~~ 68 (207)
.+|..+...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+ .++ ...++
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 4788999999999999999999994 3445678899999999999999999999999988 442 34678
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++|.++...|++++|+..+++++ ...++..+|.++...|++++|..++.+++++...
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 3445789999999999999999999999987654
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=1.1e-15 Score=118.10 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=102.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHh---CCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-------HHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMAL---SSL---YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN-------GEAWN 69 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~ 69 (207)
+|..++..|++++|+.+|++++.. .++ ...++..+|.++...|++++|+..+++++.+.+.. ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 678888899999999999999887 222 44678899999999999999999999999874432 45788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
++|.++...|++++|+..|++++ ...++.++|.++...|++++|+.++.+++++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988 2357889999999999999999999999984
No 112
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=5.2e-15 Score=108.69 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=111.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL--------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~ 65 (207)
++|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+..+++++.+ .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 5799999999999999999999998 4666788999999999999999999999999998 66778
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-----------------------------------------------------
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL----------------------------------------------------- 92 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------------------------------------------- 92 (207)
.++..+|.++...|++++|+..|++++
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 899999999999999999999999987
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 93 -YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 93 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
...++..+|.++...|++++|..+++++++..
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12368889999999999999999999998753
No 113
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.63 E-value=3.8e-15 Score=94.51 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----c---HHHHHH
Q 040667 27 SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----Y---WQLWEN 99 (207)
Q Consensus 27 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~---~~~~~~ 99 (207)
+|+++.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++ . ..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 455666666666666666666666666666666666666666666666666666666666666666 2 456666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q 040667 100 YSHVALDV-GNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 100 l~~~~~~~-~~~~~A~~~~~~al~~~p~ 126 (207)
+|.++... |++++|+.++.+++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77777777 7777777777777777664
No 114
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=2.4e-14 Score=91.47 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVA 104 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~ 104 (207)
.+..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++ +..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999 788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 105 LDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 105 ~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
...|++++|...+.++++.+|++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999743
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=3.2e-15 Score=103.44 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=106.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAAL-KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..+++++..+|+++.+++.+|.++...|+
T Consensus 45 ~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 45 AKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 578999999999999999999999999 8877666665533 33344568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 81 SKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 81 ~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+++|+..|++++ +..++..+|.++...|+.++|+..|++++.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999 255899999999999999999999999875
No 116
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.63 E-value=4.8e-15 Score=96.58 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----c-------HHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----Y-------WQLW 97 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~-------~~~~ 97 (207)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++ + ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345667777777777777777777777777777777777777777777777777777777777 2 6677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..+|.++...|++++|+.+|.++++..|+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 78888888888888888888888887773
No 117
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-14 Score=95.48 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=94.0
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHH
Q 040667 26 LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLW 97 (207)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~ 97 (207)
..|.....++.+|.+++..|++++|+..|++++...|++ ..++..+|.++...|++++|+..|++++ +..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456778899999999999999999999999999999987 8899999999999999999999999998 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+.+|.++...|++++|+.+|.++++++|++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999974
No 118
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.63 E-value=3.5e-15 Score=115.12 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=104.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMA----------------LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
.+|..++..|+|++|+.+|++++. .+|.+..++.++|.++..+|++++|+..++++++++|+++
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 307 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 307 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH
Confidence 478899999999999999999998 6777788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHH
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEA 116 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~ 116 (207)
.+++.+|.+|..+|++++|+..|++++ +..++..++.++...++++++...
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 778888899998888887776543
No 119
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=112.03 Aligned_cols=122 Identities=20% Similarity=0.143 Sum_probs=111.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL--------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~ 65 (207)
.+|..+...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+ .|...
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 5789999999999999999999995 5666788999999999999999999999999987 35567
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
.++..+|.++...|++++|+..|++++ ...++..+|.++...|++++|+.++.++++.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999998 3456899999999999999999999999997
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.63 E-value=6.5e-15 Score=110.73 Aligned_cols=125 Identities=13% Similarity=0.012 Sum_probs=106.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 69 (207)
++|.++...|++++|+.+|++++.+.+.. ..++..+|.+|.. |++++|+.+|++++.+.|.. ..++.
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIG 159 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 46788888999999999999999885432 3577889999988 99999999999999887643 56789
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
++|.++..+|++++|+..|++++ ....+..+|.++...|++++|+.+|++++ ++|...
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 99999999999999999999998 13478888999999999999999999999 988743
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.62 E-value=1.3e-14 Score=94.46 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=96.3
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHH
Q 040667 27 SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYS 101 (207)
Q Consensus 27 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~ 101 (207)
+|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++ +..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 455677899999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 102 HVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
.++...|++++|+.++.++++.+|++.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 999999999999999999999999743
No 122
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2.1e-14 Score=105.79 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=101.7
Q ss_pred chHHHHHh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 2 SLARSAYN----RGGYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 2 ~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
.+|.++.. .+++++|+.+|++++..+ ++.+++.+|.++.. .+++++|+..|++++.. +++.++.++|.
T Consensus 43 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 118 (273)
T 1ouv_A 43 NLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGG 118 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHH
Confidence 46778888 888889999998888874 78888888888888 88889999888888876 37888888888
Q ss_pred HHHH----hcCHHHHHHHHHHHh---cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 040667 74 LHMI----KKKSKEAFIAFKEAL---YWQLWENYSHVALD----VGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 74 ~~~~----~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p 125 (207)
+|.. .+++++|+.+|++++ +..++..+|.++.. .+++++|+.+|+++++..+
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 181 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD 181 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8888 888888888888888 77788888888888 8888888888888887753
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=5.5e-14 Score=105.64 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=92.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH-hcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPD-GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI-KKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~ 80 (207)
+|..+...|++++|...|++++..+|.++. +|..+|.++...|++++|+..|++++...|.+..+|...+..... .|+
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 566667777788888888888887777775 777777777777888888888888887777777777666555433 577
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+++|+..|++++ +..+|..+|.++...|++++|...|++++..
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888888877 6777888888888888888888888888875
No 124
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=3.8e-15 Score=115.09 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=111.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY-------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAW 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~ 68 (207)
++|.++...|++++|+.++++++...+.. ..++..+|.++..+|++++|+..|++++.+.+.. ..++
T Consensus 148 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (383)
T 3ulq_A 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL 227 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 57999999999999999999999985543 3578899999999999999999999999886533 3589
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++|.+|...|++++|+.+|++++ ...++.++|.++...|++++|..++++++++.+.
T Consensus 228 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 4567999999999999999999999999998654
No 125
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=9.3e-15 Score=109.89 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=107.6
Q ss_pred hcCCH-------HHHHHHHHHHHH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhc
Q 040667 9 NRGGY-------ETSKILWEAAMA-LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE-AWNNIACLHMIKK 79 (207)
Q Consensus 9 ~~~~~-------~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~ 79 (207)
..|++ ++|+..|++++. ++|++..+|..+|.++...|++++|...|++++.+.|.++. +|..+|.++...|
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence 35775 999999999999 79999999999999999999999999999999999999987 9999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALD-VGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~ 127 (207)
++++|+..|++++ ...+|...+.+... .|++++|..+|+++++..|+.
T Consensus 149 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999 55666666655443 799999999999999999973
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.62 E-value=9.1e-15 Score=92.71 Aligned_cols=91 Identities=26% Similarity=0.289 Sum_probs=88.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHh-
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIK- 78 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~- 78 (207)
.+|..++..|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|. +..++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCHHHHHHHHHHHh
Q 040667 79 KKSKEAFIAFKEAL 92 (207)
Q Consensus 79 ~~~~~A~~~~~~~~ 92 (207)
|++++|++.+++++
T Consensus 91 ~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 91 GKEVEAEIAEARAK 104 (112)
T ss_dssp SCSHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 127
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-14 Score=96.71 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=95.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
.+|..++..|++++|+.+|++++..+|++ ..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc
Confidence 46889999999999999999999999987 889999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHh-----cHHHHHHHHHHH
Q 040667 79 KKSKEAFIAFKEAL-----YWQLWENYSHVA 104 (207)
Q Consensus 79 ~~~~~A~~~~~~~~-----~~~~~~~l~~~~ 104 (207)
|++++|+..|++++ +..++..++.+.
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999998 566666666554
No 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.62 E-value=2.7e-14 Score=92.93 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=97.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-------HHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN-------GEAWNNIACL 74 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~ 74 (207)
.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ +.++..+|.+
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999998877 8899999999
Q ss_pred HHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHc
Q 040667 75 HMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDV 107 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~ 107 (207)
+...|++++|+..|++++ +...+..++.+....
T Consensus 89 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 89 YFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999999998 666667776665544
No 129
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.62 E-value=1e-15 Score=98.82 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 9 NRGGYETSKILWEAAMAL---SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
..|++++|+.+|++++.. +|+++.++..+|.++...|++++|+..|++++.++|+++.++.++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999999999 58888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040667 86 IAFKEAL 92 (207)
Q Consensus 86 ~~~~~~~ 92 (207)
..|++++
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998887
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.61 E-value=1e-13 Score=103.45 Aligned_cols=124 Identities=13% Similarity=0.022 Sum_probs=108.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNN 70 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~ 70 (207)
.+..++..|+|++|+..+.+++...|... ..++.+|.++...|++++|+..+++++...+.. ..++.+
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 46678899999999999999999887654 245678999999999999999999999876543 568999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 71 IACLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|.+|...|++++|+.+|++++ ...+++++|.++...|++++|+.++++++++.++
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 2268999999999999999999999999987643
No 131
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=6.1e-15 Score=109.92 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=112.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALS--------SLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~ 65 (207)
.+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.. .|...
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 57899999999999999999999874 555678899999999999999999999999998 66677
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-----------------------------------------------------
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL----------------------------------------------------- 92 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------------------------------------------- 92 (207)
.++..+|.++...|++++|+..|++++
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 889999999999999999999999887
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 -YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...++..+|.++...|++++|..+|++++++.|+
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1356889999999999999999999999998874
No 132
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.61 E-value=2.6e-14 Score=93.30 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHh-----c---HHHHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACLHMIKKKSKEAFIAFKEAL-----Y---WQLWENY 100 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~---~~~~~~l 100 (207)
.+++.+|.+++..|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++ + ..+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999988 899999999999999999999999999 4 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 101 SHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 101 ~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
|.++...|++++|+..|+++++..|+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 9999999999999999999999999744
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.61 E-value=7.9e-14 Score=89.87 Aligned_cols=107 Identities=26% Similarity=0.497 Sum_probs=100.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.+|++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVG 108 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~ 108 (207)
++|+..|++++ +..++..++.++...|
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999998 7788888888887654
No 134
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=4.5e-15 Score=115.21 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=104.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCCHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP----DGWFALGAAALKARDVEKALDGFTRAVQL------DPDNGEAWNNIA 72 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~ 72 (207)
+|..++..|++++|+.+|++++...|+++ .++..+|.++...|++++|+..+++++.+ .|....++..+|
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 67888899999999999999999998876 47888999999999999999999998887 456677888899
Q ss_pred HHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhcC
Q 040667 73 CLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGN-----------------IGQALEAVQMVLNMT 124 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~al~~~ 124 (207)
.++...|++++|+..|++++ ...++..+|.++...|+ +++|+.++.+++++.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888887 34578888888888888 888888888887765
Q ss_pred C
Q 040667 125 N 125 (207)
Q Consensus 125 p 125 (207)
+
T Consensus 214 ~ 214 (411)
T 4a1s_A 214 R 214 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 135
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=3.2e-14 Score=112.44 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=80.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-------------------cCHHHHHHHHHHHHccCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKA-------------------RDVEKALDGFTRAVQLDP 62 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~a~~~~p 62 (207)
++|..+...|++++|+..|++++..+|+++.++..+|.+|... +.+++|+..+++++.++|
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 3566666666666666666666666666666666666665432 235566666666666666
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 63 DNGEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHV-ALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
.+..++..+|.++...|++++|+..|++++ ...++..+|.+ +...|++++|+..|.+++++.|+.
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 666666677777777777777777777776 12234445543 345667777777777777776653
No 136
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.7e-14 Score=102.53 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHh-
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNN----------------IACLHMIKKKSKEAFIAFKEAL- 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~- 92 (207)
....++..|..++..|++++|+..|++++.++|+++.+|+. +|.++...|++++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999 9999999999999999999999
Q ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 93 ----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 93 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+..++..+|.++...|++++|+.+|+++++++|++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 889999999999999999999999999999999844
No 137
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.59 E-value=6.6e-15 Score=113.65 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=92.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-------CHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSS------LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-------NGEAWN 69 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~ 69 (207)
+|..++..|++++|+.+|++++...+ ....++..+|.++...|+++.|+..+++++.+.+. .+.++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 46677788888888888888887642 23457778888888888888888888888876432 235677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
++|.++...|++++|+..|++++ ...++.++|.++...|++++|+.++.++++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888887 345678888888888888888888888888
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.59 E-value=8.9e-14 Score=103.76 Aligned_cols=123 Identities=13% Similarity=0.032 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPD------GWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNNI 71 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l 71 (207)
+..++..|+|++|+..+++++...+..+. .+..+|.++...+++++|+..|++++.+.+.. ..++.++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 56678899999999999999998877665 23358999999999999999999999865432 3479999
Q ss_pred HHHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 72 ACLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|.+|...|++++|+.+|++++ ...+++++|.++...|++++|+.++.+++++.+.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 3458999999999999999999999999998754
No 139
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.5e-14 Score=111.68 Aligned_cols=125 Identities=15% Similarity=0.201 Sum_probs=113.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPD------GWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 69 (207)
++|.++...|++++|+.++++++...|.... ++..+|.++...|++++|+..+++++.+.|.. ..++.
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 5789999999999999999999998765543 88999999999999999999999999887655 67899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|.++...|++++|+..|++++ ...++..+|.++...|++++|..++++++++.+.
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 2678999999999999999999999999998654
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=9.2e-14 Score=94.35 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVAL 105 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~ 105 (207)
+..+..+|.+++..|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++ +..+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999 7889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccHH---HH--HHHHHHHhcccc
Q 040667 106 DVGNIGQALEAVQMVLNMTNNKRIDTE---LL--ERIVLDLEGRTS 146 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~~p~~~~~~~---~~--~~~~~~~~~~~~ 146 (207)
..|++++|+.++.++++++|++..... .. ....+.+++++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998433221 11 233455666553
No 141
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=6.8e-14 Score=107.95 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=111.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC------CCHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY-------PDGWFALGAAALKARDVEKALDGFTRAVQLDP------DNGEAW 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~ 68 (207)
++|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+..|++++.+.+ ....++
T Consensus 146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57899999999999999999999975532 34778999999999999999999999998743 124688
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++|.++...|++++|+.+|++++ ...++..+|.++...|++++|..++++++++.+.
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5678999999999999999999999999998765
No 142
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.58 E-value=1.5e-14 Score=97.20 Aligned_cols=100 Identities=17% Similarity=0.069 Sum_probs=82.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH----------HHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDV----------EKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
+.+.|++|+..+++++..+|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred cCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 79 KKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|.+.- .. ....|++++|+.+|+++++++|+
T Consensus 94 g~l~P---------~~---------~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTP---------DE---------TEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCC---------CH---------HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCc---------ch---------hhhhccHHHHHHHHHHHHHhCCC
Confidence 74200 00 11125677777888888888886
No 143
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=1.7e-14 Score=112.01 Aligned_cols=125 Identities=13% Similarity=0.166 Sum_probs=113.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPD------GWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 69 (207)
++|.++...|++++|+.++++++...|.... ++..+|.++...|++++|+..+++++.+.+.. ..++.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4789999999999999999999998775443 88899999999999999999999999987744 67899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|.++...|++++|+.+|++++ ...++..+|.++...|++++|..++++++++.+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998 3558899999999999999999999999999874
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=8.6e-14 Score=109.94 Aligned_cols=128 Identities=10% Similarity=0.027 Sum_probs=109.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL---------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDN 64 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~ 64 (207)
.||.++...|++++|+.+|++++++ +|....++.++|.+|..+|++++|+.++++++.+ .+..
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 4899999999999999999999986 5667778999999999999999999999999876 3456
Q ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHh-----cHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCccc
Q 040667 65 GEAWNNIACLHMIKK--KSKEAFIAFKEAL-----YWQLWENYSHVALD---VGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 65 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
+.++.++|.++...| ++++|+.+|++++ +..++..++.++.. .++.++|+..++++++++|++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 788999998887765 6999999999999 77788888877554 57778999999999999998443
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=5.8e-14 Score=100.05 Aligned_cols=117 Identities=15% Similarity=0.032 Sum_probs=108.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR----DVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
.||..+...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.. +.++.+++++|.+|..
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHc
Confidence 5789999999999999999999875 689999999999998 7 99999999999965 6789999999999988
Q ss_pred ----hcCHHHHHHHHHHHh---c----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 040667 78 ----KKKSKEAFIAFKEAL---Y----WQLWENYSHVALD----VGNIGQALEAVQMVLNM 123 (207)
Q Consensus 78 ----~~~~~~A~~~~~~~~---~----~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~ 123 (207)
.+++++|+.+|++++ + ..+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 889999999999999 5 7999999999999 88999999999999998
No 146
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=1.9e-14 Score=107.99 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=105.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 69 (207)
++|.++...|++++|+.++++++...+... .++..+|.++...|++++|+..+++++.+.+.. ..++.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 468888999999999999999998765432 378889999999999999999999999876654 67888
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|.++...|++++|+..+++++ ...++..+|.++...|++++|..++++++++.+.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988 2557889999999999999999999999988764
No 147
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.57 E-value=1.9e-14 Score=107.27 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=113.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+..+++++..+|+....+...+..+...++.++|+..+++++..+|+++.+++++|.++...|++
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 57899999999999999999999999977777777888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL-----Y--WQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 82 ~~A~~~~~~~~-----~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
++|+..|++++ + ..++..++.++...|+.++|...|++++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999 3 78999999999999999999999999875
No 148
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=110.84 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=105.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCCHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP----DGWFALGAAALKARDVEKALDGFTRAVQL------DPDNGEAWNNI 71 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l 71 (207)
.+|..++..|++++|+.+|++++...|.++ .++..+|.++...|++++|+..+++++.+ .|....++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 368889999999999999999999999874 57788999999999999999999998877 33446788899
Q ss_pred HHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 040667 72 ACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGN--------------------IGQALEAVQMV 120 (207)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a 120 (207)
|.++...|++++|+..+++++ ...++..+|.++...|+ +++|+..+.++
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999888 24578889999999999 89999998888
Q ss_pred HhcC
Q 040667 121 LNMT 124 (207)
Q Consensus 121 l~~~ 124 (207)
+++.
T Consensus 174 l~~~ 177 (406)
T 3sf4_A 174 LSLV 177 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=3.5e-14 Score=106.77 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=108.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--C----HHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY------PDGWFALGAAALKARDVEKALDGFTRAVQLDPD--N----GEAWNN 70 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~ 70 (207)
.|.++...|+|++|+.+|.+++.+.+.. ..++..+|.+|..+|++++|+..|++++.+.+. + ..++.+
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678889999999999999999986533 457889999999999999999999999988532 2 467899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 71 IACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|.+|.. |++++|+.+|++++ ...++.++|.++...|++++|+.+|++++++.|.
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999 1568999999999999999999999999998765
No 150
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=3e-14 Score=106.85 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=101.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCCHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP----DGWFALGAAALKARDVEKALDGFTRAVQL------DPDNGEAWNNIA 72 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~ 72 (207)
.|..++..|++++|+.+|++++...|+++ .++..+|.++...|++++|+..+++++.+ .|....++..+|
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 57888899999999999999999988874 56778899999999999999999988876 334467788888
Q ss_pred HHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 040667 73 CLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGN--------------------IGQALEAVQMVL 121 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~al 121 (207)
.++...|++++|+..+++++ ...++..+|.++...|+ +++|+..+.+++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 88888999999988888887 24478888888888888 888888888887
Q ss_pred hcC
Q 040667 122 NMT 124 (207)
Q Consensus 122 ~~~ 124 (207)
.+.
T Consensus 171 ~~~ 173 (338)
T 3ro2_A 171 SLV 173 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=6.6e-14 Score=104.03 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHH
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSH 102 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~ 102 (207)
|.+...+..+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|+..|++++ +..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 103 VALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++...|++++|+..|.++++++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999864
No 152
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=9.1e-15 Score=92.92 Aligned_cols=87 Identities=9% Similarity=0.141 Sum_probs=75.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNNIACLH 75 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~ 75 (207)
.+|..++..|+|++|+.+|++++..+|+++.++..+|.++..+|++++|+..+++++.++|++ ..++..+|.++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 88 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQ 88 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 468888889999999999999999999999999999999999999999999999999999988 77888888888
Q ss_pred HHhcCHHHHHHHH
Q 040667 76 MIKKKSKEAFIAF 88 (207)
Q Consensus 76 ~~~~~~~~A~~~~ 88 (207)
...|++++|+..+
T Consensus 89 ~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 89 GAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHCCCCCSSSS
T ss_pred HHHHhHhhhHhHH
Confidence 8888877766544
No 153
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=1.5e-13 Score=97.34 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=87.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH----------------
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---------------- 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---------------- 65 (207)
++|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++.+.|.+.
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 121 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccch
Confidence 5799999999999999999999999999999999999999999999999999999999888766
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.++.++|.++...|++++|+..|++++
T Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 122 EVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999999999999999998
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.53 E-value=5.8e-14 Score=103.36 Aligned_cols=123 Identities=15% Similarity=-0.012 Sum_probs=111.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-C-HHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-N-GEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~-~~~~~~l~~~~~~~~~ 80 (207)
+|..+...|+|++|...|..++...|++. ..+.+|.++++.++|++|+..|+++....+. . ..+++++|.++..+|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 46778899999999999999999999888 9999999999999999999999988775322 1 3589999999999999
Q ss_pred HHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 81 SKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 81 ~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++|+..|++++ ...+++.+|.++..+|+.++|...|++++..+|+
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999998 2358999999999999999999999999999994
No 155
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.53 E-value=2.7e-13 Score=86.94 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 15 TSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 15 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999998887
No 156
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.52 E-value=1.2e-12 Score=98.10 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHccCCCCHHHHHHHHHHH----HHh---cCHHHH
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAALKAR--DVEKALDGFTRAVQLDPDNGEAWNNIACLH----MIK---KKSKEA 84 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~----~~~---~~~~~A 84 (207)
++|+.++.+++.++|++..+|+.++.++..++ ++++++..+.+++..+|.+..+|+..+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 45666666666666666666666666666666 666666666666666666666666666665 444 456666
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCC
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALDVGNIG--QALEAVQMVLNMTNN 126 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~ 126 (207)
+..+.+++ +..+|+..+.++...|.++ +++.++.++++.+|.
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 66666666 5566666666666666555 666666666666665
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=1.9e-13 Score=94.24 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=88.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHccCH--HHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAA-ALKARDV--EKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
.+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++ ++|+..+++++..+|.++.++..+|.++...
T Consensus 49 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999999 8899999 9999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHh
Q 040667 79 KKSKEAFIAFKEAL 92 (207)
Q Consensus 79 ~~~~~A~~~~~~~~ 92 (207)
|++++|+..|++++
T Consensus 129 g~~~~A~~~~~~al 142 (177)
T 2e2e_A 129 ANYAQAIELWQKVM 142 (177)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999998
No 158
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.50 E-value=1.1e-13 Score=92.91 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHh-----cHHHHHHHHHHHHH
Q 040667 42 LKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS----------KEAFIAFKEAL-----YWQLWENYSHVALD 106 (207)
Q Consensus 42 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~-----~~~~~~~l~~~~~~ 106 (207)
.+.+.|++|+..++++++++|+++.+|.++|.++..++++ ++|+..|++++ ...+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999876 59999999999 88899999999998
Q ss_pred cC----CHHHHHHHHHHHHhcC
Q 040667 107 VG----NIGQALEAVQMVLNMT 124 (207)
Q Consensus 107 ~~----~~~~A~~~~~~al~~~ 124 (207)
.| ++..+...+.+|++..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFF 114 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHH
Confidence 87 4456666666665543
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=1.5e-13 Score=96.39 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=98.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHhcC
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL------DPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~ 80 (207)
.+..|++++|...++......+....++..+|.++...|++++|+..+++++.+ .|....++.++|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999999655554433366789999999999999999999999999983 44556789999999999999
Q ss_pred HHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 81 SKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 81 ~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
+++|+..+++++ ...++.++|.++...|++++|..++.+++++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999998 235689999999999999999999999998754
No 160
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.49 E-value=5.1e-13 Score=95.15 Aligned_cols=121 Identities=17% Similarity=0.014 Sum_probs=108.9
Q ss_pred chHHHHHhcC----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCC--CCHHHHHHH
Q 040667 2 SLARSAYNRG----GYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDP--DNGEAWNNI 71 (207)
Q Consensus 2 ~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~~~~l 71 (207)
+||.+|.. + ++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|+++++..| .++.+++++
T Consensus 55 ~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~L 131 (212)
T 3rjv_A 55 LLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLL 131 (212)
T ss_dssp HHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 46777777 6 99999999999965 5789999999999998 8999999999999999988 458999999
Q ss_pred HHHHHH----hcCHHHHHHHHHHHh----cHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 040667 72 ACLHMI----KKKSKEAFIAFKEAL----YWQLWENYSHVALDV-G-----NIGQALEAVQMVLNMTN 125 (207)
Q Consensus 72 ~~~~~~----~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~al~~~p 125 (207)
|.+|.. .+++++|+.+|++++ +..+++++|.+|... | ++++|+.+|+++.+...
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999 889999999999998 677999999999764 3 89999999999998864
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=9.2e-13 Score=106.82 Aligned_cols=137 Identities=11% Similarity=0.073 Sum_probs=121.7
Q ss_pred HHHHHhcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHccCCCCHHHHHHH
Q 040667 4 ARSAYNRGG----------YETSKILWEAAMALSSLYPDGWFALGAAALKAR--DVEKALDGFTRAVQLDPDNGEAWNNI 71 (207)
Q Consensus 4 a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l 71 (207)
+.++...|+ +++++.++.+++..+|++..+|..++.++..++ +++++++.+.++++++|.+..+|...
T Consensus 70 ~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R 149 (567)
T 1dce_A 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149 (567)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHH
Confidence 445555566 999999999999999999999999999999999 77999999999999999999999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHh-----cHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCccccH
Q 040667 72 ACLHMIKK-KSKEAFIAFKEAL-----YWQLWENYSHVALDV--------------GNIGQALEAVQMVLNMTNNKRIDT 131 (207)
Q Consensus 72 ~~~~~~~~-~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~ 131 (207)
+.+....| .++++++++.+++ +..+|+..+.++... +.++++++++.+++.++|++...+
T Consensus 150 ~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999 8999999999999 899999999999885 567999999999999999865555
Q ss_pred HHHHHHHHH
Q 040667 132 ELLERIVLD 140 (207)
Q Consensus 132 ~~~~~~~~~ 140 (207)
-....++..
T Consensus 230 ~y~~~ll~~ 238 (567)
T 1dce_A 230 FYHRWLLGR 238 (567)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhc
Confidence 555444443
No 162
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.48 E-value=6e-13 Score=102.61 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHc----------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQ----------------LDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-- 92 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 92 (207)
...+..+|..++..|++++|+..|++++. ++|.+..+|.++|.++..+|++++|+..|++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999998 778888999999999999999999999999999
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 93 ---YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 93 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 889999999999999999999999999999999844
No 163
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.47 E-value=8e-13 Score=80.74 Aligned_cols=78 Identities=27% Similarity=0.545 Sum_probs=57.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
.+|..+...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++.++|.++.++.++|.++...|
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 356677777777777777777777777777777777777777777777777777777777777777777777766543
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.47 E-value=8e-14 Score=89.85 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=77.0
Q ss_pred HccCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHH
Q 040667 43 KARDVEKALDGFTRAVQL---DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQAL 114 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~ 114 (207)
..|++++|+..|++++.+ +|.++.++.++|.++...|++++|+..|++++ +..+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHhcCCCc
Q 040667 115 EAVQMVLNMTNNK 127 (207)
Q Consensus 115 ~~~~~al~~~p~~ 127 (207)
..+.++++..|++
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 9999999999974
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.47 E-value=9.1e-12 Score=94.46 Aligned_cols=135 Identities=10% Similarity=0.019 Sum_probs=83.4
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-c-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 5 RSAYNRG-GYETSKILWEAAMALSSLYPDGWFALGAAALKA-R-DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 5 ~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+....| .+++++.++.+++..+|++..+|..++.++..+ + ++++++..+.++++.+|.+..+|...+.+....|.+
T Consensus 96 ~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 96 SLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 3344445 366666666666666666666666666666665 5 666666666666666666666666666666666666
Q ss_pred H--------HHHHHHHHHh-----cHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCCccccHHHHHHHHH
Q 040667 82 K--------EAFIAFKEAL-----YWQLWENYSHVALDVGN-------IGQALEAVQMVLNMTNNKRIDTELLERIVL 139 (207)
Q Consensus 82 ~--------~A~~~~~~~~-----~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 139 (207)
+ ++++.+.+++ +..+|+..+.++...+. ++++++++.+++..+|++...+-.+..++.
T Consensus 176 ~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 176 GRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5 6666666666 66666666666666655 566666666666666664444433333333
No 166
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=4.4e-12 Score=102.02 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=101.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP-DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL-HMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~ 80 (207)
+|..+...|++++|...|++++..+|.++ .+|..+|.++.+.|++++|...|++++...|.....+...+.+ +...|+
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 46667778888888888888888888775 5888888888888888888888888888888777777666655 345788
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+++|...|++++ +..+|..++.++...|++++|..+|++++...|..
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 888888888888 67888888888888888888888888888876543
No 167
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.46 E-value=3.8e-12 Score=95.33 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=125.8
Q ss_pred hHHHHHhcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH----HHc---cCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 3 LARSAYNRG--GYETSKILWEAAMALSSLYPDGWFALGAAA----LKA---RDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 3 la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
.+.++...+ ++++++.++.+++..+|++..+|..++.++ ... +++++++..+.+++..+|.+..+|...+.
T Consensus 73 R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~ 152 (306)
T 3dra_A 73 RFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKW 152 (306)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356667778 999999999999999999999999999999 777 78999999999999999999999999999
Q ss_pred HHHHhcCHH--HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 040667 74 LHMIKKKSK--EAFIAFKEAL-----YWQLWENYSHVALDVGNIG------QALEAVQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 74 ~~~~~~~~~--~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~------~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
+....|.++ ++++.+.+++ +..+|+..+.++...+... ++++++.+++..+|++...+-....++..
T Consensus 153 vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 153 LVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999 9999999999 8899999999998876532 58899999999999977777666676666
Q ss_pred Hhcc
Q 040667 141 LEGR 144 (207)
Q Consensus 141 ~~~~ 144 (207)
....
T Consensus 233 ~~~~ 236 (306)
T 3dra_A 233 FDRS 236 (306)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6544
No 168
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=1.6e-12 Score=84.59 Aligned_cols=91 Identities=27% Similarity=0.555 Sum_probs=87.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 40 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|...+++++
T Consensus 120 ~~A~~~~~~~~ 130 (136)
T 2fo7_A 120 DEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 169
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.44 E-value=1.4e-12 Score=81.67 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=61.7
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 26 LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..|++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999887
No 170
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=4.4e-12 Score=102.82 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=113.0
Q ss_pred hcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 9 NRGG-YETSKILWEAAMALSSLYPDGWFALGAAALKARD----------VEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 9 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
..|+ .++|+..+.+++..+|++..+|+.++.++..+|+ +++++..+.+++..+|.+..+|+..++++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444 4678999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred hc--CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCccc
Q 040667 78 KK--KSKEAFIAFKEAL-----YWQLWENYSHVALDVG-NIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 78 ~~--~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 129 (207)
.+ +++++++.+.+++ +..+|...+.+....| .++++++++.++++.+|++..
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 99 6799999999999 8999999999999999 899999999999999998443
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=1.3e-13 Score=109.81 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVAL 105 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~ 105 (207)
+.++..+|.++...|++++|+..|+++++++|.++.+|.++|.++..+|++++|+..|++++ +..+++++|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999 7889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccHHHH-----HHHHHHHhcccc
Q 040667 106 DVGNIGQALEAVQMVLNMTNNKRIDTELL-----ERIVLDLEGRTS 146 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~ 146 (207)
..|++++|+..|+++++++|++......+ ....+.+++++.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999854433332 333467777765
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=4.1e-12 Score=97.53 Aligned_cols=124 Identities=11% Similarity=0.013 Sum_probs=92.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH------HHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPD-----GWFALGAAALKARDVEKALDGFTRAVQLDPDNG------EAWNNI 71 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~l 71 (207)
+|..+...|++++|+.++++++...|.... ++..+|.++...|++++|...+++++.+.|... .++.++
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 466777788888888888888887765432 566778888888888888888888887654321 336678
Q ss_pred HHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 72 ACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|.++...|++++|+..+++++ ...++.++|.++...|++++|..++.+++.+.|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 888888888888888888877 1235667788888888888888888888877664
No 173
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.41 E-value=1.6e-11 Score=97.88 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=59.9
Q ss_pred hHHHHHh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----cCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 3 LARSAYN----RGGYETSKILWEAAMALSSLYPDGWFALGAAALKA-----RDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 3 la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
+|.++.. .+++++|+.+|+++++. .++.+++.+|.++... +++++|+.+|+++++. .++.+++++|.
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 336 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGA 336 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 4444544 55555555555555443 3445555555555554 5555555555555443 23445555555
Q ss_pred HHHHhc---CHHHHHHHHHHHh---cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 040667 74 LHMIKK---KSKEAFIAFKEAL---YWQLWENYSHVALD----VGNIGQALEAVQMVLNM 123 (207)
Q Consensus 74 ~~~~~~---~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~ 123 (207)
+|...| ++++|+.+|++++ +..+++.+|.++.. .+++++|+.+|+++.+.
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 555433 4555555555555 44555555555555 45555555555555543
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=2.3e-13 Score=103.71 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=89.3
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHH
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG-----------------EAWNNIACLHMIKKKSKEAFIAFKE 90 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (207)
+.....+..+|.+++..|+|++|+..|++++.+.|.+. .+|.++|.++..+|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34456788999999999999999999999999999876 4899999999999999999999999
Q ss_pred Hh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 91 AL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 91 ~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
++ +..+++++|.++...|++++|+.+|+++++++|++..
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 99 8899999999999999999999999999999997443
No 175
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=3.2e-12 Score=98.10 Aligned_cols=125 Identities=15% Similarity=0.066 Sum_probs=108.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccC--------CCCHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLD--------PDNGEA 67 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~ 67 (207)
.+|..+...|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+. |....+
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 467889999999999999999999766443 346789999999999999999999999874 334567
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.++|.++...|++++|...+++++ ...++..+|.++...|++++|..++.+++.+.+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999998 2457889999999999999999999999987543
No 176
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=8.9e-12 Score=100.26 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=105.6
Q ss_pred cCCHH-------HHHHHHHHHHH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhcC
Q 040667 10 RGGYE-------TSKILWEAAMA-LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG-EAWNNIACLHMIKKK 80 (207)
Q Consensus 10 ~~~~~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~ 80 (207)
.|+++ +|+..|++++. ..|++..+|..+|.++...|++++|...|++++.+.|.++ .+|..+|.++...|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68876 99999999997 8999999999999999999999999999999999999985 699999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHV-ALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+++|...|++++ ...++...+.+ +...|++++|..+|+++++..|++
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 999999999999 34455555544 346899999999999999999973
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2e-13 Score=86.64 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----c------HHHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----Y------WQLWE 98 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~------~~~~~ 98 (207)
+..++..+|.++...|++++|+..|++++.++|.++.++.++|.++...|++++|+..|++++ + ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999 4 77888
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 040667 99 NYSHVALDVGNIGQALEAVQM 119 (207)
Q Consensus 99 ~l~~~~~~~~~~~~A~~~~~~ 119 (207)
.+|.++...|+++.|+..+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999888887777655543
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.40 E-value=1.8e-11 Score=92.43 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC-HHHHHHHHH
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARD--VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK-SKEAFIAFK 89 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 89 (207)
+++++.++..++..+|.+..+|...+.++..+++ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 7899999999999999999999999999999994 9999999999999999999999999999999999 599999999
Q ss_pred HHh-----cHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCccccH
Q 040667 90 EAL-----YWQLWENYSHVALDV--------------GNIGQALEAVQMVLNMTNNKRIDT 131 (207)
Q Consensus 90 ~~~-----~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~ 131 (207)
+++ +..+|+..+.++... +.++++++++.+++..+|++...+
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999 899999999999887 458899999999999999944433
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.40 E-value=2.5e-11 Score=91.59 Aligned_cols=134 Identities=10% Similarity=0.129 Sum_probs=118.3
Q ss_pred HhcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 040667 8 YNRGGYE-TSKILWEAAMALSSLYPDGWFALGAAALKARD----------VEKALDGFTRAVQLDPDNGEAWNNIACLHM 76 (207)
Q Consensus 8 ~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 76 (207)
...|+++ +|+.++.+++..+|++..+|+..+.++..++. +++++.++.+++..+|.+..+|+..+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3566665 79999999999999999999999999988876 789999999999999999999999999999
Q ss_pred HhcC--HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 040667 77 IKKK--SKEAFIAFKEAL-----YWQLWENYSHVALDVGN-IGQALEAVQMVLNMTNNKRIDTELLERIVLDL 141 (207)
Q Consensus 77 ~~~~--~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 141 (207)
..+. +++++..+.+++ +..+|...+.+....|. +++++.++.++++.+|.+...+.....++..+
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9994 899999999999 99999999999999998 59999999999999999665555544444433
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=1.2e-11 Score=82.03 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=100.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hcCHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI----KKKSKEAF 85 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~ 85 (207)
.+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578999999999998864 4444 999999999999999999999986 689999999999999 89999999
Q ss_pred HHHHHHh---cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 040667 86 IAFKEAL---YWQLWENYSHVALD----VGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 86 ~~~~~~~---~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p 125 (207)
.+|+++. +..+++++|.+|.. .+++++|+.+|+++.+...
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999 99999999999999 8999999999999998754
No 181
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.39 E-value=2e-11 Score=92.61 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=112.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh-c-CHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR-DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK-K-KSKEAF 85 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-~-~~~~A~ 85 (207)
..+..++|+.++.+++..+|++..+|+.++.++..+| .+++++..+.+++..+|.+..+|+..+.++... + ++++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445678999999999999999999999999999999 599999999999999999999999999999998 8 899999
Q ss_pred HHHHHHh-----cHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCcc
Q 040667 86 IAFKEAL-----YWQLWENYSHVALDVGNIG--------QALEAVQMVLNMTNNKR 128 (207)
Q Consensus 86 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~p~~~ 128 (207)
..+.+++ +..+|...+.+....|.++ +++.++.++++.+|.+.
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 9999999 8999999999999998888 99999999999999843
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.39 E-value=3.1e-12 Score=101.75 Aligned_cols=118 Identities=12% Similarity=-0.052 Sum_probs=102.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CCCC---HHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMAL-----SSLYP---DGWFALGAAALKARDVEKALDGFTRAVQL-----DPDN---GEAW 68 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~ 68 (207)
..+..+|+|++|+.++++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++++ .|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466899999999999999986 34444 57789999999999999999999999975 3555 4578
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+++|.+|..+|++++|+..|++++ ...+..+++.++..++.+++|...|.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 455678899999999999999999988855
No 183
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.37 E-value=2.3e-12 Score=80.20 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=61.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPD-GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 69 (207)
..|..++..|++++|+..|++++..+|+++. +++.+|.++...|++++|+..|++++.++|++..++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3678889999999999999999999999998 9999999999999999999999999999999888774
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.36 E-value=1.2e-11 Score=79.07 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 48 EKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
++|+..|++++..+|+++.++..+|.++...|++++|+..|++++ +..+|+.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999 788999999999999999999999999999
Q ss_pred cCCC
Q 040667 123 MTNN 126 (207)
Q Consensus 123 ~~p~ 126 (207)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 9886
No 185
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=1.5e-11 Score=97.18 Aligned_cols=116 Identities=11% Similarity=0.012 Sum_probs=105.0
Q ss_pred chHHHHHhcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 040667 2 SLARSAYNRG---GYETSKILWEAAMALSSLYPDGWFALGAAALKA----RDVEKALDGFTRAVQLDPDNGEAWNNIACL 74 (207)
Q Consensus 2 ~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 74 (207)
+||.++...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |+++.+++++|.+
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 4788888889 999999999999999999998889999999765 79999999999988 8999999999998
Q ss_pred -H--HHhcCHHHHHHHHHHHh---cHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 040667 75 -H--MIKKKSKEAFIAFKEAL---YWQLWENYSHVALDVG-----NIGQALEAVQMVL 121 (207)
Q Consensus 75 -~--~~~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al 121 (207)
+ ...+++++|+.+|+++. +..+++++|.+|. .| ++++|+.+|+++.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 4 46889999999999999 8899999999998 55 9999999999998
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.36 E-value=1e-11 Score=75.69 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHH
Q 040667 29 LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHV 103 (207)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~ 103 (207)
.+..+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++ +..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999998 77888889988
Q ss_pred HHHcC
Q 040667 104 ALDVG 108 (207)
Q Consensus 104 ~~~~~ 108 (207)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 87654
No 187
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.34 E-value=9.2e-11 Score=93.46 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=62.1
Q ss_pred hHHHHHh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 040667 3 LARSAYN----RGGYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74 (207)
Q Consensus 3 la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 74 (207)
+|..|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+
T Consensus 45 lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 120 (490)
T 2xm6_A 45 LGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVM 120 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 4444444 55555555555555543 345555555555555 55555555555555442 345555555555
Q ss_pred HHH----hcCHHHHHHHHHHHh---cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 040667 75 HMI----KKKSKEAFIAFKEAL---YWQLWENYSHVALD----VGNIGQALEAVQMVLNM 123 (207)
Q Consensus 75 ~~~----~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~ 123 (207)
|.. .+++++|+.+|+++. +..+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 555 455555555555555 44555555555554 44555555555555443
No 188
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.31 E-value=4.2e-11 Score=88.20 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHH---------------------------------------------------
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFAL--------------------------------------------------- 37 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------------------------------------------- 37 (207)
..+++..|...|.+++..+|+..++|..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57899999999999999999999999866
Q ss_pred -----------HHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--c-----HHHHHH
Q 040667 38 -----------GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL--Y-----WQLWEN 99 (207)
Q Consensus 38 -----------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-----~~~~~~ 99 (207)
+.++...|+|++|.+.|..++...|++. +.+.+|.+++..+++++|+..|+++. . ..++++
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 2445667889999999998888888888 89999999999999999999999888 1 458999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CC----ccccHHHHHHHHHHHhccc
Q 040667 100 YSHVALDVGNIGQALEAVQMVLNMT--NN----KRIDTELLERIVLDLEGRT 145 (207)
Q Consensus 100 l~~~~~~~~~~~~A~~~~~~al~~~--p~----~~~~~~~~~~~~~~~~~~~ 145 (207)
+|.++..+|++++|+.+|++++.-. |. .....+.+....+..+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999998543 43 2233444444444444443
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=2.4e-11 Score=81.50 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------c
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNNIACLHMIKKKSKEAFIAFKEAL-----------Y 93 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~ 93 (207)
..++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+..+++++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4577899999999999999999999999886532 2588999999999999999999999999 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 94 WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..++..+|.++...|++++|+.++.+++++.+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999987543
No 190
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.26 E-value=6.5e-10 Score=84.45 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH--------HHHHHHHH--HHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKARDV--------EKALDGFT--RAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--------~~A~~~~~--~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++.+|+.+|+++++.+|+++.++..++.++.....+ ......++ .++..+|.++.++..++..+...|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 458999999999999999999999888888632211 11111222 23466799999999999999999999
Q ss_pred HHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..+++++ +...|..+|.++...|++++|+..|.+|+.++|.
T Consensus 294 d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 294 DESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999 7778889999999999999999999999999996
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2e-10 Score=89.65 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=91.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHccCCC---
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPD-----------------GWFALGAAALKARDVEKALDGFTRAVQLDPD--- 63 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--- 63 (207)
|..+...|+|++|++.|.+++...|.... ++..+|.+|...|++++|.+.+.+++...+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 55566777777777777777776665422 3566777777777777777777666543211
Q ss_pred -------------------------------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------
Q 040667 64 -------------------------------------------NGEAWNNIACLHMIKKKSKEAFIAFKEAL-------- 92 (207)
Q Consensus 64 -------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 92 (207)
...++.++|.++...|+|++|+..+++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 13466788999999999999999998887
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 ---YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...++..+|.++...|++++|..++++++...+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 5668889999999999999999999999887654
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.25 E-value=5e-11 Score=74.48 Aligned_cols=80 Identities=11% Similarity=0.244 Sum_probs=69.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~ 79 (207)
.+|.+++..|++++|+.+|++++..+|+++.+|+.+|.++..+|++++|+..|++++.+.|. +......+...+...+
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence 57999999999999999999999999999999999999999999999999999999998763 4555566666665555
Q ss_pred CH
Q 040667 80 KS 81 (207)
Q Consensus 80 ~~ 81 (207)
.+
T Consensus 92 ~~ 93 (100)
T 3ma5_A 92 GL 93 (100)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 193
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=2.9e-10 Score=84.79 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=99.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-----C-HHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSS--LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-----N-GEAWNNIACL 74 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~-~~~~~~l~~~ 74 (207)
+|.++...|++++|+.++.+.+..+| ++.+++..++.++.++|+.+.|.+.+++..+.+|+ + ......-+++
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence 67889999999999999999999887 78889999999999999999999999999888883 2 2333333555
Q ss_pred HHHhc--CHHHHHHHHHHHh----cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 75 HMIKK--KSKEAFIAFKEAL----YW-QLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 75 ~~~~~--~~~~A~~~~~~~~----~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
....| ++.+|+..|+++. +. .....+. +++.+|++++|...++.+++..|
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcc
Confidence 77667 8999999999988 21 1222223 89999999999999998888743
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.19 E-value=4.3e-11 Score=74.32 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=67.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcC
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGE-AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVG 108 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~ 108 (207)
+..|.++...|++++|+..|++++..+|.++. ++..+|.++...|++++|+..|++++ +..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788999999999999999999999999998 99999999998999888888888888 3333322 4
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 040667 109 NIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 109 ~~~~A~~~~~~al~~~p~ 126 (207)
.+.++...|.++...+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 566777777777776665
No 195
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.18 E-value=5.9e-10 Score=88.13 Aligned_cols=110 Identities=15% Similarity=-0.012 Sum_probs=60.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hc
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR-----DVEKALDGFTRAVQLDPDNGEAWNNIACLHMI----KK 79 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~ 79 (207)
..+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. |.++.+++++|.+|.. ..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp GGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCc
Confidence 345555555555555543 25555555555555 33 5555666665555 5555556666655544 22
Q ss_pred CHHHHHHHHHHHh---cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 040667 80 KSKEAFIAFKEAL---YWQLWENYSHVALD----VGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 80 ~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~ 124 (207)
++++|+.+|+++. +..+.+++|.+|.. ..++.+|..+|.++.+..
T Consensus 337 d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 337 YPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5556666666555 55555556655543 235556666666655544
No 196
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.13 E-value=6.5e-10 Score=86.53 Aligned_cols=112 Identities=14% Similarity=0.257 Sum_probs=86.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|..++..|+|++|..+|.++ ..|..+|.++.++|+|++|++.++++ .++..|...+.++...|++
T Consensus 127 ~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 127 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp ----------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcH
Confidence 5788888889999999998876 35778899999999999999999988 4678888888999999999
Q ss_pred HHHHHHHHHHh-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.|..+....+ ++.-...+..+|.+.|.+++|+.++++++.+++.
T Consensus 194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 99977666543 5555667888999999999999999999999975
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=1.5e-09 Score=71.86 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=83.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH-
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI- 77 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~- 77 (207)
||..|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 567777778899999999999987 689999999999999 89999999999999986 689999999999999
Q ss_pred ---hcCHHHHHHHHHHHh---cHHHHHHHH
Q 040667 78 ---KKKSKEAFIAFKEAL---YWQLWENYS 101 (207)
Q Consensus 78 ---~~~~~~A~~~~~~~~---~~~~~~~l~ 101 (207)
.+++++|+.+|+++. +..+...++
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 899999999999998 555555544
No 198
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.06 E-value=1.9e-09 Score=93.66 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=79.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC------------------
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD------------------ 63 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------------------ 63 (207)
++|..+...|++++|++.|.++ +++..+..+|.++.+.|+|++|+++|..+....+.
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH
Confidence 4678888888888888888775 67888888888888888888888888776655432
Q ss_pred ---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 64 ---------NGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 64 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
+...+..+|..+...|+|++|..+|.++ .-|..+|.++.+.|++++|++++.++.
T Consensus 1185 ele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 1234556677777777777777777654 356666666666666666666666663
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.03 E-value=3.1e-09 Score=66.77 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=65.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALS-------SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 74 (207)
.||..++..++|..|+.+|++|+... +..+.++..+|.+++++|+++.|+..+++++.+.|++..+..+++..
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 48999999999999999999999864 23467889999999999999999999999999999999998888743
No 200
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.99 E-value=1.5e-08 Score=88.28 Aligned_cols=111 Identities=14% Similarity=0.258 Sum_probs=83.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ .+..+|...+.++...|+|.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHH
Confidence 566777777777777777764 35666777777777777777777776 34567777777777777777
Q ss_pred HHHHHHHHHh-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.|..+....+ ++.-+..++..|...|.+++|+.+++.++.++|.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence 7777665433 6666778888999999999999999999999976
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.98 E-value=4e-09 Score=64.80 Aligned_cols=64 Identities=20% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 040667 27 SSLYPDGWFALGAAALKARD---VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKE 90 (207)
Q Consensus 27 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (207)
+|+++..+..+|.+++..++ .++|...+++++.++|+++.++..+|..++..|+|++|+..|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666666666654444 56666666666666666666666665555444444444444333
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.97 E-value=2.5e-09 Score=83.82 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CCCC---HHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMAL-----SSLYP---DGWFALGAAALKARDVEKALDGFTRAVQL-----DPDN---GEAWNNIA 72 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~l~ 72 (207)
.+|+|++|+..+++++.+ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 344555555555555443 12222 23344444555555555555555544432 1222 22344444
Q ss_pred HHHHHhcCHHHHHHHHHHHh
Q 040667 73 CLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+|..+|++++|+..|++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 44444444444444444444
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.97 E-value=1.6e-09 Score=85.01 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CCCC---HHHHHHHHHH
Q 040667 11 GGYETSKILWEAAMAL-----SSLYP---DGWFALGAAALKARDVEKALDGFTRAVQL-----DPDN---GEAWNNIACL 74 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~l~~~ 74 (207)
|+|++|+.++++++.+ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555555553 23332 23445555555555555555555555533 2222 2334444444
Q ss_pred HHHhcCHHHHHHHHHHHh
Q 040667 75 HMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~ 92 (207)
|..+|++++|+..|++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 444444444444444443
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=7.6e-09 Score=80.67 Aligned_cols=121 Identities=7% Similarity=-0.037 Sum_probs=94.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCCHHHHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSS------LYPDGWFALGAAALKARDVEKALDGFTRAVQL------DPDNGEAWNNIA 72 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~ 72 (207)
..+...|++++|+.++++++...+ ....++..+|.++...|+|++|...+++++.. .|....++..+|
T Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 103 KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 333444555555555555554322 12456788999999999999999999998865 233467899999
Q ss_pred HHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 73 CLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.+|...|++++|...+++++ ...++..+|.++...|++++|..+|.++++..+
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999999999999988 346678889999999999999999999987543
No 205
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.93 E-value=1.5e-10 Score=90.14 Aligned_cols=103 Identities=9% Similarity=-0.016 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQ 112 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (207)
+|..+|..++..|.|++|..+|.++ ..|..+|.++.++|++++|++.++++.++.+|...+.++...|+++.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHH
Confidence 5556666666666666666666654 24666666666666666666666666666666666666666667666
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 113 ALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 113 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
|..+... +...|+.......++...|.++++
T Consensus 196 A~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 196 AQMCGLH-IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 6655554 334444322222333333444444
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.90 E-value=9.9e-09 Score=81.70 Aligned_cols=88 Identities=7% Similarity=-0.114 Sum_probs=76.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHH
Q 040667 37 LGAAALKARDVEKALDGFTRAVQL-----DPDNG---EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQ 95 (207)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~ 95 (207)
.+..+...|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++ ...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344566889999999999999975 35554 678999999999999999999999999 566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.+.++|.+|..+|++++|+.+|++++++.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999754
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.89 E-value=6.9e-09 Score=81.36 Aligned_cols=82 Identities=7% Similarity=0.085 Sum_probs=73.3
Q ss_pred HccCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHH
Q 040667 43 KARDVEKALDGFTRAVQL-----DPDNG---EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYS 101 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~ 101 (207)
..|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++ ....++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999999974 45664 568999999999999999999999999 556799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 040667 102 HVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.+|..+|++++|+.+|++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=3.8e-08 Score=65.43 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=55.0
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040667 49 KALDGFTRAVQLDPDNGEAWNNIACLHMIKK---KSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQ 118 (207)
Q Consensus 49 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~ 118 (207)
.+...|.+.+..+|.+..+.+++|+++.+.+ +.++++..++..+ ....++++|..+++.|+|++|..+++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3344444444444444444444444444444 3334444444444 23466777788888888889999999
Q ss_pred HHHhcCCCccccHHHHHHHHHHH
Q 040667 119 MVLNMTNNKRIDTELLERIVLDL 141 (207)
Q Consensus 119 ~al~~~p~~~~~~~~~~~~~~~~ 141 (207)
++++++|++.........+...+
T Consensus 96 ~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 96 GLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999997655555555444444
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.88 E-value=6.9e-08 Score=59.21 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHH
Q 040667 61 DPDNGEAWNNIACLHMIKKK---SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTE 132 (207)
Q Consensus 61 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 132 (207)
+|+++.++..+|.+++..++ .++|...+++++ +..+++.+|..++..|+|++|+.+|+++++.+|. .....
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~ 80 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRV 80 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHH
Confidence 68999999999999987776 799999999999 8999999999999999999999999999999998 44444
Q ss_pred HHHHH
Q 040667 133 LLERI 137 (207)
Q Consensus 133 ~~~~~ 137 (207)
.+...
T Consensus 81 ~i~~~ 85 (93)
T 3bee_A 81 TIIES 85 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 210
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=8.6e-08 Score=71.50 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=97.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC-----C-hHHHHHHHHHHHHcc--CHHHHHHHHHHHHccCCC--CHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL-----Y-PDGWFALGAAALKAR--DVEKALDGFTRAVQLDPD--NGEAWNNIA 72 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~-----~-~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~l~ 72 (207)
++.+++..|+.+.|.+.++++...+|+ + ......-+++.+..| ++++|..+|+++....|+ .+..+++
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-- 219 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-- 219 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--
Confidence 567899999999999999999999983 2 223333355576667 999999999999888886 3334444
Q ss_pred HHHHHhcCHHHHHHHHHHHh---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 73 CLHMIKKKSKEAFIAFKEAL---------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
++..+|++++|...++..+ ++.++.+++.+....|+ +|.+++.++.+..|+++.
T Consensus 220 -~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 220 -LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp -HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred -HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 8999999999999998643 45677788888888897 899999999999998543
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.79 E-value=5.9e-08 Score=76.10 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=75.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHH
Q 040667 38 GAAALKARDVEKALDGFTRAVQL-----DPDNG---EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQL 96 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~ 96 (207)
..-+...|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++ ....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455789999999999999975 35554 678999999999999999999999999 5567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
++++|.+|..+|++++|+.++++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999864
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=1.3e-07 Score=62.81 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHccC-C-CCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKAR---DVEKALDGFTRAVQLD-P-DNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
....+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++..+..+ | ...++++++|..++++|+|++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788899998888999999999999999988 7779999999999998 7 568999999999999999999999
Q ss_pred HHHHHh
Q 040667 87 AFKEAL 92 (207)
Q Consensus 87 ~~~~~~ 92 (207)
++++++
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.71 E-value=2.8e-07 Score=57.71 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNI 110 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (207)
+.-.+.+|..++..++|..|+..|++++...+.... .+ .. ...++..+|.++.+.|++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----------~~-~~----------~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------ST-ID----------KVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CS-SC----------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----------Cc-cc----------HHHHHHHHHHHHHHccCH
Confidence 344566667777777777777777666654211100 00 00 234556666777777777
Q ss_pred HHHHHHHHHHHhcCCCc
Q 040667 111 GQALEAVQMVLNMTNNK 127 (207)
Q Consensus 111 ~~A~~~~~~al~~~p~~ 127 (207)
+.|+..++++++++|++
T Consensus 63 ~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 77777777777777764
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.66 E-value=7.6e-07 Score=65.34 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=84.3
Q ss_pred CCCChHHHHHHHHHHHH-----------ccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHh-----cCHHHHHHHH
Q 040667 27 SSLYPDGWFALGAAALK-----------ARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIK-----KKSKEAFIAF 88 (207)
Q Consensus 27 ~p~~~~~~~~l~~~~~~-----------~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~~ 88 (207)
+|+++++++..|.+... ++....|...++++++++|+ ++.+|..+|.+|... |+.++|..+|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 35556666655555432 12458899999999999999 677999999999995 9999999999
Q ss_pred HHHh------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Q 040667 89 KEAL------YWQLWENYSHVALD-VGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 89 ~~~~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~ 127 (207)
++++ +..+++.+|..++. .|+++++..++++++...|..
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999 47889999999988 499999999999999998874
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=1.9e-07 Score=68.48 Aligned_cols=81 Identities=19% Similarity=0.085 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----cCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHh-cCHH
Q 040667 12 GYETSKILWEAAMALSSL--YPDGWFALGAAALKA-----RDVEKALDGFTRAVQLDPDN-GEAWNNIACLHMIK-KKSK 82 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~-~~~~ 82 (207)
....|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ...++.+|..+... |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 357899999999999999 567999999999995 99999999999999999975 99999999999884 9999
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
++...+++++
T Consensus 258 ~a~~~L~kAL 267 (301)
T 3u64_A 258 GFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999999
No 216
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.61 E-value=3e-06 Score=55.66 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=98.9
Q ss_pred HhCCCChHHHHHHHHHHHHccCH------HHHHHHHHHHHccCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 040667 25 ALSSLYPDGWFALGAAALKARDV------EKALDGFTRAVQLDPDN--------GEAWNNIACLHMIKKKSKEAFIAFKE 90 (207)
Q Consensus 25 ~~~p~~~~~~~~l~~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (207)
...|++++.|........+.|+. ++-++.|++++..-|-. ...|...+.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 45799999999999999988999 99999999999887642 3567777755 567999999999999
Q ss_pred Hh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhccc
Q 040667 91 AL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGRT 145 (207)
Q Consensus 91 ~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 145 (207)
++ .+.+|...|....+.|+...|.+.+.+++.+.|. ....+...+.++....
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k---~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV---PLEMLEIALRNLNLQK 142 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---CHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC---cHHHHHHHHHhhhcCC
Confidence 98 8899999999999999999999999999999986 7788888777776553
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.57 E-value=1.6e-06 Score=71.62 Aligned_cols=41 Identities=5% Similarity=-0.115 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040667 18 ILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAV 58 (207)
Q Consensus 18 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 58 (207)
..|.+++...|.+...|+.++......|++++|...|++++
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.47 E-value=1.9e-06 Score=57.67 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYP---------DGWFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
...++..|.|+.|+-....++....+++ .++..+|+.++..++|..|...|++++..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4567889999999999988776543322 36788999999999999999999998765
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.45 E-value=8.3e-06 Score=52.27 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHH
Q 040667 47 VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE---AFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEA 116 (207)
Q Consensus 47 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~ 116 (207)
...+...|.+....++.+..+.+++|+++.+..+... ++..++..+ ....++.+|..+++.|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555555555555555666666666665555444 555555555 345678888889999999999999
Q ss_pred HHHHHhcCCCccccHHHHHHHHHH
Q 040667 117 VQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 117 ~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
++.+|+..|++.........+...
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999755444444444333
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.45 E-value=4.9e-06 Score=68.85 Aligned_cols=121 Identities=10% Similarity=0.116 Sum_probs=105.8
Q ss_pred HHhcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 7 AYNRGGYETSKILWEAAMAL-SSLYPDGWFALGAAALKARD-VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
....|+.+.|...|.+|+.. .+.....|...+.+....+. ++.|..+|+++++..|+++..|...+......|+.+.|
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 34567899999999999987 44456777777887777654 99999999999999999999999999999999999999
Q ss_pred HHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 85 FIAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 85 ~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
...|++++ ...+|..+...-...|+.+.+..+..++.+..|+.
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999 23578888888889999999999999999999973
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.34 E-value=1.1e-05 Score=61.50 Aligned_cols=124 Identities=9% Similarity=0.036 Sum_probs=85.2
Q ss_pred HHHHhCCCChHHHH--HHHHHHHHc---cCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH----HHHHH----HH
Q 040667 22 AAMALSSLYPDGWF--ALGAAALKA---RDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS----KEAFI----AF 88 (207)
Q Consensus 22 ~al~~~p~~~~~~~--~l~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~----~~A~~----~~ 88 (207)
++....|.++.+|- ..|.-++.. ..+.+|+..|+++++++|+++.++..++.+|.....+ ..... .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 44556787777664 456666554 4468999999999999999999999888887632211 11111 22
Q ss_pred HHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--cccHHHHHHHHHHHhccc
Q 040667 89 KEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK--RIDTELLERIVLDLEGRT 145 (207)
Q Consensus 89 ~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~ 145 (207)
+.+. ++.++..++..+...|++++|+..+++++.++|+. ..-.+.+..+.|..++++
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2211 77888888888888999999999999999999862 123344444555555554
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.22 E-value=0.00019 Score=57.40 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 11 GGYETSKILWEAAMALS--SLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-PDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
++.++|...|++..... | +...|..+...+.+.|++++|...|++..... .-+...|..+-..|.+.|+.++|.+.
T Consensus 84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 34788999999887753 4 67788899999999999999999999977652 23667888999999999999999999
Q ss_pred HHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 88 FKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 88 ~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
|++.. +...|..+..++.+.|+.++|..++++.-+.
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99988 8889999999999999999999999998764
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.19 E-value=0.00027 Score=56.53 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=98.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHccC-CCCHHHHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALS--SLYPDGWFALGAAALKA---------RDVEKALDGFTRAVQLD-PDNGEAWNNIA 72 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 72 (207)
..+.+.|+.++|+..|++..... | +...|..+-.++... +..++|...|++..... +-+...|..+.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45568999999999999998764 4 556666666666543 44789999999876543 23667899999
Q ss_pred HHHHHhcCHHHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 040667 73 CLHMIKKKSKEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNM--TNN 126 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~ 126 (207)
..|.+.|++++|.+.|++.. +...|..+-..+.+.|+.++|...|.+..+. .|+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999877 8888999999999999999999999998864 454
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.07 E-value=3e-05 Score=51.91 Aligned_cols=89 Identities=10% Similarity=-0.085 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH---------HHHHHHHHHHHHhcCHHHHHHHHHHHh----------
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---------EAWNNIACLHMIKKKSKEAFIAFKEAL---------- 92 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~---------- 92 (207)
++++.-..-++..|.|+.|+.....++.+..+++ .+...+|.+++..++|..|...|++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4556666777889999999999999777643332 478899999999999999999999988
Q ss_pred c--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 93 Y--------------------WQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 93 ~--------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
. ..+.+.++.|+.+.+++++|+..++..
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 157799999999999999999987654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=0.00015 Score=46.49 Aligned_cols=83 Identities=10% Similarity=0.018 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH---HHHHHHHHHccC-C-CCHHHHHHHHHHHHHhcCHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEK---ALDGFTRAVQLD-P-DNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~A 84 (207)
......+...|.+.+..++....+.+.+|+++.+...... ++..++..+..+ | ..-+..+.+|..++++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445677788888888888899999999999998887766 999999988876 5 4567899999999999999999
Q ss_pred HHHHHHHh
Q 040667 85 FIAFKEAL 92 (207)
Q Consensus 85 ~~~~~~~~ 92 (207)
..+++.++
T Consensus 94 ~~~~~~lL 101 (126)
T 1nzn_A 94 LKYVRGLL 101 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999888
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.01 E-value=0.00022 Score=56.93 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=95.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR-DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
..++.+.|...|.++ ...+.....|...+.+.+..+ +.+.|...|+.++...|+++..|...+......|+.+.|...
T Consensus 298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 466789999999999 433335566766677777666 699999999999999999999988888888899999999999
Q ss_pred HHHHh-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 88 FKEAL-YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 88 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
|+++. ...+|......-...|+.+.+...+++++.
T Consensus 377 ~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99988 778888888888888999999999988885
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.99 E-value=0.00027 Score=56.42 Aligned_cols=112 Identities=9% Similarity=-0.037 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHH-------------------
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL------------------- 74 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~------------------- 74 (207)
+.....|++++...|..+..|+..+..+...|+.+.|...|++++.. |.+...|...+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 45677899999999999999999999999999999999999999998 8876555444332
Q ss_pred ---------------------HHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCC
Q 040667 75 ---------------------HMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDVG-NIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 75 ---------------------~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~ 126 (207)
....++.+.|...|.++. ...+|...+.+....+ +.+.|...|+.+++..|+
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 223455566666666653 3345555555544444 466777777777766655
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.82 E-value=0.00074 Score=43.47 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHhcCH---HHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHH
Q 040667 64 NGEAWNNIACLHMIKKKS---KEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELL 134 (207)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 134 (207)
.+.+.+++++++.+..+. ..++..++..+ ....++.+|..+.+.|+|++|..+.+.+++..|++.......
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 556777777777776653 46777776666 466788889999999999999999999999999855544444
Q ss_pred HHHHHH
Q 040667 135 ERIVLD 140 (207)
Q Consensus 135 ~~~~~~ 140 (207)
..+...
T Consensus 119 ~~Ie~k 124 (134)
T 3o48_A 119 SMVEDK 124 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.76 E-value=0.0012 Score=43.01 Aligned_cols=80 Identities=9% Similarity=-0.002 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHH
Q 040667 62 PDNGEAWNNIACLHMIKKKS---KEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTE 132 (207)
Q Consensus 62 p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 132 (207)
+-+..+.+++++++.+..+. .+++..++..+ ....++.+|..+++.|+|++|..+.+.+|+..|++.....
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44667777788877776654 46777777766 5567888999999999999999999999999998655555
Q ss_pred HHHHHHHHH
Q 040667 133 LLERIVLDL 141 (207)
Q Consensus 133 ~~~~~~~~~ 141 (207)
....+...+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.68 E-value=0.00036 Score=44.90 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHccC---HHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 30 YPDGWFALGAAALKARD---VEKALDGFTRAVQLDPD-NGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+.+.+.+|+++.+..+ ..+++..+...+..+|. .-+.++.+|..++++|+|++|..+.+.++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555544432 23455555555544442 23445555555555555555555555555
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.57 E-value=0.00086 Score=43.71 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHccC---HHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 30 YPDGWFALGAAALKARD---VEKALDGFTRAVQLDPD-NGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...+.+++++++.+... ..+++..++..+...|. .-+..+.++..++++|+|++|..+.+.++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55666666666665543 34566666666665553 34566666666666777777766666666
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0087 Score=40.68 Aligned_cols=102 Identities=9% Similarity=-0.048 Sum_probs=62.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
...+.|+++.|.+..++. ++...|..+|......|+++-|..+|.++-.. -.+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHH
Confidence 456788888888887664 57788899999999999999999998876432 22333444444443333
Q ss_pred HHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 86 IAFKEALYWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
..-+.+....-+.....++...|+++++++.|.+.
T Consensus 81 kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 33332220001112224456667777777766543
No 233
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.34 E-value=0.021 Score=41.46 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=86.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHH---HHHHHHHHhcCH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWN---NIACLHMIKKKS 81 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~---~l~~~~~~~~~~ 81 (207)
...+..|+.++|+......++.+|.+......+-..+.-.|+|+.|...++-+.+++|.....-. .+..+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 35678899999999999999999999999999999999999999999999999999998754322 222111
Q ss_pred HHHHHHHHHHh--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL--------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++..+ .......-+......|+.++|...-.++++..|.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 122222 2223344456677789999999999999999876
No 234
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.31 E-value=0.064 Score=46.39 Aligned_cols=114 Identities=7% Similarity=-0.092 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------cHHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQL----DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------YWQLWENYSH 102 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~l~~ 102 (207)
.+..+-..|.+.|+.++|...|.+.... -.-+...|+.+...|.+.|+.++|.+.|++.. +...|..+-.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 5778899999999999999999764322 23366789999999999999999999999988 8888999999
Q ss_pred HHHHcCCH-HHHHHHHHHHHhc--CCC-----ccccHHHHHHHHHHHhcccc
Q 040667 103 VALDVGNI-GQALEAVQMVLNM--TNN-----KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 103 ~~~~~~~~-~~A~~~~~~al~~--~p~-----~~~~~~~~~~~~~~~~~~~~ 146 (207)
++.+.|+. ++|..++++..+. .|+ ..........++..+.+...
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 99999985 7889999998874 465 23444555566666666643
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.25 E-value=0.0046 Score=47.76 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=82.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC--------hH--------------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 8 YNRGGYETSKILWEAAMALSSLY--------PD--------------GWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~--------~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
...|+.+.|...+.+++...... .+ +...++..+...|++.+++..+.+++..+|.+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34688999999999999875221 11 223456777889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcC-CH-HHHHHHHHHHHhcCCC
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG-NI-GQALEAVQMVLNMTNN 126 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~A~~~~~~al~~~p~ 126 (207)
.+|..+..++...|+..+|+..|+++. ..+....| +. .+-...+..++..+|.
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r--------~~L~~eLG~~P~~~l~~l~~~il~~~~~ 260 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVK--------TTLADDLGIDPGPTLRALNERILRQQPL 260 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH--------HHHHHHHSCCCCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhCCCCCHHHHHHHHHHHcCCCC
Confidence 999999999999999999999998753 11122333 22 2344556666666665
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.14 E-value=0.01 Score=39.12 Aligned_cols=83 Identities=10% Similarity=-0.055 Sum_probs=69.2
Q ss_pred hcCCH------HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 040667 9 NRGGY------ETSKILWEAAMALSSLY--------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74 (207)
Q Consensus 9 ~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 74 (207)
..|+. ++-++.|++|+..-|-. ...|...+.. ...++.++|...|+.++.+...++.+|...+..
T Consensus 25 ~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqF 103 (161)
T 4h7y_A 25 KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQF 103 (161)
T ss_dssp HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHH
T ss_pred HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34777 88889999999876643 2345555544 567999999999999999888899999999999
Q ss_pred HHHhcCHHHHHHHHHHHh
Q 040667 75 HMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~ 92 (207)
-.++|+...|.+.+.+++
T Consensus 104 EiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 104 ELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHh
Confidence 999999999999999887
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0052 Score=48.94 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=52.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
||....-...+..|..+|.+|....|+++..+..+|.+....|+.-+|+-+|-+++....-.+.+..++...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 556666666677777777777777777777777777777777777777777777776655566666666666554
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.04 E-value=0.034 Score=37.50 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=84.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
+.-.+|+.++-+-.- +.|..++....++.+++..|.|..++-.+.+ -+.....+--..||.++++|..|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677776644322 2344556667788999999999999988743 34566777788999999999999999
Q ss_pred HHHHh-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 88 FKEAL-----------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 88 ~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++.+ ....+..+|.++...|+.++|+.++.......|-
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 99988 2345677899999999999999999999988873
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0076 Score=48.01 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALD 106 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~ 106 (207)
++..+|++......++.|..+|.+|..+.|+++..++.+|.+....|+.-+|+-+|.+++ ...+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 456789999889999999999999999999999999999999999999999999999999 66666666666654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0033 Score=52.49 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRA 57 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 57 (207)
+..+..+|+|+-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445667899999999999999999999999999999999999999999998887
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.016 Score=48.51 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 040667 42 LKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91 (207)
Q Consensus 42 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (207)
...|+++.|.+..+. .++...|..+|..+.+.++++.|..+|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 445555555554321 234455555555555555555555555554
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0059 Score=51.00 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-+..+...|+++-|+...++++...|..-..|+.|+.+|..+|+|+.|+-.++.+-
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35556678999999999999999999999999999999999999999998877663
No 243
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.005 Score=48.99 Aligned_cols=121 Identities=10% Similarity=0.002 Sum_probs=59.2
Q ss_pred HhcCCHHHHHHHHHHHHH-----------hCCCChHHHHHHHHHHHHccCHHHHH--------------HHHHHHH-ccC
Q 040667 8 YNRGGYETSKILWEAAMA-----------LSSLYPDGWFALGAAALKARDVEKAL--------------DGFTRAV-QLD 61 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~~~~~~A~--------------~~~~~a~-~~~ 61 (207)
+..+++++|..+-...+. .++-...+|+.++.++...|+..... ..++.+. ..+
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 456788888887765551 13334567888888887777665422 1222221 122
Q ss_pred CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 62 PD-NGEAWNNIACLHMIKKKSKEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 62 p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+. -...+..+-..|...+.|+.|.....++. ....++.+|.++...++|.+|.+++..|++..|...
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 22 24567888889999999999999999997 355678889999999999999999999999988744
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.65 E-value=0.049 Score=42.05 Aligned_cols=89 Identities=13% Similarity=-0.125 Sum_probs=66.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDP--DN----GEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLW 97 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~ 97 (207)
.+|..|+..|+|.+|...+.+...--. ++ .+++..-..+|...+++..+...+.++. ...+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 678889999999999888887765321 11 3556677778888899998888888876 33445
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q 040667 98 ENYSHVAL-DVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 98 ~~l~~~~~-~~~~~~~A~~~~~~al~~~ 124 (207)
..-|..++ ..++|.+|...|-++++-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 56677788 7899999999888887533
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.063 Score=36.45 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQL 96 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~ 96 (207)
+++..+.+ ....|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- +..-
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence 44444544 46789999999998765 578899999999999999999999999876 4455
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 040667 97 WENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~ 117 (207)
+..++.+....|++.-|..++
T Consensus 79 L~kla~iA~~~g~~n~af~~~ 99 (177)
T 3mkq_B 79 LSKMQNIAQTREDFGSMLLNT 99 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCccHHHHHHHH
Confidence 566777777778887776665
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0095 Score=46.65 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------cHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDP---DNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----------YWQL 96 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~ 96 (207)
..++..+|..|...|++++|.+.|.++..... .-.+++.....++...+++..+...+.++. ....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34677888888888888888888888776432 224677777788888888888888888876 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
....|.++...++|.+|...|.+++.-.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4455666777888888888888876543
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.059 Score=45.11 Aligned_cols=77 Identities=26% Similarity=0.253 Sum_probs=50.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHHHHhc
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~ 79 (207)
...|++++|.+..+ ..++...|..+|..+.+.++++.|+.+|.++-.. ...+...+..++......|
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455555554432 3457788999999999999999999999986332 2334445555666666666
Q ss_pred CHHHHHHHHH
Q 040667 80 KSKEAFIAFK 89 (207)
Q Consensus 80 ~~~~A~~~~~ 89 (207)
++..|...|.
T Consensus 738 ~~~~A~~~~~ 747 (814)
T 3mkq_A 738 KFNLAFNAYW 747 (814)
T ss_dssp CHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 6666654443
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.36 E-value=0.12 Score=34.86 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...+..++..|-.++...+|..+-+.+|.
T Consensus 212 a~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 212 SNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 34556677788888888888887777774
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.19 E-value=0.19 Score=38.75 Aligned_cols=91 Identities=16% Similarity=0.019 Sum_probs=71.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHccCHHHHHHHHHHHHccC---CCCH----HHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL--Y----PDGWFALGAAALKARDVEKALDGFTRAVQLD---PDNG----EAW 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~----~~~ 68 (207)
.+|..|+..|+|.+|...+.+....-.. + .+.+..-..+|..++++.++...+.++.... +.++ .+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4789999999999999999998875322 2 2355567888899999999999999986543 2333 345
Q ss_pred HHHHHHHH-HhcCHHHHHHHHHHHh
Q 040667 69 NNIACLHM-IKKKSKEAFIAFKEAL 92 (207)
Q Consensus 69 ~~l~~~~~-~~~~~~~A~~~~~~~~ 92 (207)
..-|..+. ..++|..|...|-++.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 66788888 8999999999998886
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.15 Score=40.08 Aligned_cols=89 Identities=10% Similarity=0.020 Sum_probs=59.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcc-C-CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHH
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQL-D-PDN----GEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQL 96 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~-p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~ 96 (207)
..|+.++...|++.+|...+.....- . ..+ ..++.....++...+++..|...++++. ....
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677777778888887777775421 1 111 3456666777777788877777777754 3345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+...|.++...++|.+|..+|.++++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566677777777887777777777653
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.066 Score=41.88 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=72.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHccC--CCCH----HHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL---YPDGWFALGAAALKARDVEKALDGFTRAVQLD--PDNG----EAWNNIA 72 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~----~~~~~l~ 72 (207)
.+|..++..|++++|.++|.++...... -.+.+.....++...++|..+...+.++-.+. ..++ ......|
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 4789999999999999999998876432 34677788889999999999999999986552 2232 3345567
Q ss_pred HHHHHhcCHHHHHHHHHHHh
Q 040667 73 CLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~ 92 (207)
.++...++|.+|...|..+.
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHh
Confidence 77888899999999998876
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.81 E-value=0.26 Score=43.54 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=80.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-----------------------CC
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-----------------------PD 63 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------p~ 63 (207)
+...+.++-+. +.+...|.++...+.+|.++...|++++|..+|+++..-- ..
T Consensus 822 l~~~~~~~~~~----~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 822 LFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HHHHSCTTHHH----HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred HHHhhhHHHHH----HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccccc
Confidence 34445554433 3445567788888999999999999999999999874321 01
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 64 NGEAWNNIACLHMIKKKSKEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
.+..|..+..++.+.+-++.+++..+.|+ ....|..+-..+...|+|++|...+...
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 12456777778888899999999988888 2336788888899999999997776543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.79 E-value=0.044 Score=42.26 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=52.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
++..+...|++.+++..+..++..+|.+..++..+..++...|+..+|+..|+++-.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999988643
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.78 E-value=0.17 Score=43.90 Aligned_cols=88 Identities=5% Similarity=-0.110 Sum_probs=72.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMA-----LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--DPDNGEAWNNIACLH 75 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 75 (207)
+-..++..|+.++|...|.+... ..| +...|..+...|.+.|++++|.+.|++..+. .| +...|..+-.++
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~gl 210 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHH
Confidence 45678899999999999977543 345 7788999999999999999999999998764 34 566778888889
Q ss_pred HHhcCH-HHHHHHHHHHh
Q 040667 76 MIKKKS-KEAFIAFKEAL 92 (207)
Q Consensus 76 ~~~~~~-~~A~~~~~~~~ 92 (207)
.+.|+. ++|.+.|++..
T Consensus 211 cK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHH
Confidence 999985 78889998887
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.78 Score=36.02 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=71.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhC--CCC----hHHHHHHHHHHHHccCHHHHHHHHHHHHc---cCCCCH----HHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALS--SLY----PDGWFALGAAALKARDVEKALDGFTRAVQ---LDPDNG----EAW 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~----~~~ 68 (207)
.|+..+...|++.+|...+.....-. ..+ .+.+.....++...++|.+|...++++.. ..+..+ ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 47889999999999999998876432 111 34666778899999999999999999742 233333 456
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...|..+...++|.+|-.+|..+.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 778999999999999999998876
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.73 E-value=0.36 Score=42.61 Aligned_cols=89 Identities=11% Similarity=-0.044 Sum_probs=68.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhC-----------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALS-----------------------SLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+|.+++..|++++|..+|+++-..- ...+..|..+..++.+.+.++.++...+.|++
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999998873210 01123566778888899999999999999998
Q ss_pred cCC-CCH----HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 040667 60 LDP-DNG----EAWNNIACLHMIKKKSKEAFIAFKEA 91 (207)
Q Consensus 60 ~~p-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (207)
..+ ++. ..|.++=..+...|+|++|...+...
T Consensus 928 ~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 928 SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 764 333 26778888899999999998777543
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.33 E-value=1.7 Score=35.66 Aligned_cols=50 Identities=14% Similarity=-0.013 Sum_probs=24.0
Q ss_pred HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 43 KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+.|+++.|...|++.-...+..+...+.+|.++...|+.++|...|+++.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555555544333222334444555555555555555555555444
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.01 E-value=2.6 Score=34.64 Aligned_cols=115 Identities=8% Similarity=-0.002 Sum_probs=76.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGW----FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.+...+.+.|...+.+.....+-+.... ..++.-....+...++...+.+.....+++.......+ .....|+++
T Consensus 224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr~~d~~ 302 (618)
T 1qsa_A 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRR 302 (618)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHH
T ss_pred HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHH-HHHHCCCHH
Confidence 3445577888888877765444333322 22333333344355677777776554443333333334 445679999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
.|...|.+.- .....+.+|..+...|+.++|...|.++..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998765 566788899999999999999999999876
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.91 E-value=2.2 Score=31.81 Aligned_cols=25 Identities=12% Similarity=-0.120 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
++.++..+|..+...|++.+|..+|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5667777777777777777777666
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.79 E-value=2.2 Score=36.96 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=51.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------------------------
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------------------- 92 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------- 92 (207)
...+...|.++-+.+ .+..-|.++..-+.+|.++...|++++|..+|+++-
T Consensus 817 ~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 817 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc
Confidence 334444444443322 234444444444555555555555555555555433
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 93 ---YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 93 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
....|..+..++...+-++.++...+.|++...
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 223567778889999999999999999997543
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.35 E-value=2.7 Score=31.59 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
++.++..+|..+.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5566666666666666666666555
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=2.5 Score=33.85 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=48.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY-------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
+-+.|...+.|+.|..+..++. .|.. ...++.+|.++.-.++|.+|.+.+..|+...|.+
T Consensus 237 lLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 237 ILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3467888899999999999884 4432 2355678999999999999999999999988754
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.66 E-value=6.2 Score=34.24 Aligned_cols=83 Identities=11% Similarity=-0.004 Sum_probs=55.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-CC---------------------
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-PD--------------------- 63 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~--------------------- 63 (207)
.+...|.++-+ .+.+...|.++..-+.+|.++...|++++|...|+++-.-- ..
T Consensus 819 ~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 819 KLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 34445555433 34556677788888889999999999999999999875321 10
Q ss_pred -CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 64 -NGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 64 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
....|.....++...+-++-++...+.|+
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01245566666666777777777766666
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.10 E-value=4 Score=29.69 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred HHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 40 AALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 40 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-+++.|..++|+......+..+|.+......+...++-.|+++.|.+-++.+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999988777
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.77 E-value=5.2 Score=27.66 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=65.0
Q ss_pred HHHHHHHccC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 52 DGFTRAVQLD---------PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 52 ~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
..+++++... |....+|..++..+ ..++..++...|.-.. .+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677776542 22235566666544 2344667777777666 78889999999999999999999
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHhcccc
Q 040667 116 AVQMVLNMTNNKRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 146 (207)
.|...++.... ....+......+.....
T Consensus 137 Vy~~GI~~~A~---P~~rL~~~~~~F~~R~~ 164 (202)
T 3esl_A 137 LLELGAENNCR---PYNRLLRSLSNYEDRLR 164 (202)
T ss_dssp HHHHHHHTTCB---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc---cHHHHHHHHHHHHHHHH
Confidence 99999997754 56777766666666654
No 266
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=87.68 E-value=5.8 Score=30.20 Aligned_cols=61 Identities=13% Similarity=-0.013 Sum_probs=41.1
Q ss_pred HHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhcc
Q 040667 84 AFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGR 144 (207)
Q Consensus 84 A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~ 144 (207)
++..|.+++ ..-.+..+|.++++.+++.+|+.++.++-..-.. ...+.+.+..+.+.-.+.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 555566665 5566788888999999999999999888766554 334555555554443333
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.67 E-value=4.6 Score=26.34 Aligned_cols=78 Identities=8% Similarity=-0.144 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 040667 11 GGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKE 90 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (207)
||...-+.+|-+. + .+......--..+...|+-++-.+.+...+.-.+-++.....+|.+|.+.|+..+|-+.+.+
T Consensus 75 ~NlKrVi~C~~~~---n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 75 QNLKSVVECGVIN---N-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp SCTHHHHHHHHHT---T-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcHHHHHHHHHHh---c-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4445555555432 2 23333233334556788888888888887666777899999999999999999999999988
Q ss_pred Hh
Q 040667 91 AL 92 (207)
Q Consensus 91 ~~ 92 (207)
|.
T Consensus 151 AC 152 (172)
T 1wy6_A 151 AC 152 (172)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 268
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=86.64 E-value=6.5 Score=30.53 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=42.4
Q ss_pred HHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhcc
Q 040667 84 AFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGR 144 (207)
Q Consensus 84 A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~ 144 (207)
++..|.+++ +.-.|..+|.++++.+++.+|+.+|.++-..-.. ...+.+.+..+.+.-.+.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 371 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 371 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHh
Confidence 455555555 5667788889999999999999999888766554 344555555555544443
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=86.40 E-value=2.2 Score=24.21 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
.+|..+...|++++|...|-+|+...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45555555666666666666666555543
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.41 E-value=9.5 Score=28.36 Aligned_cols=26 Identities=19% Similarity=-0.017 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHH
Q 040667 63 DNGEAWNNIACLHMIKKKSKEAFIAF 88 (207)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 88 (207)
.++..+..+|..+...|++.+|..+|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 34455555555555555555555444
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=82.10 E-value=5.5 Score=23.10 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=9.8
Q ss_pred HHHhcCHHHHHHHHHH
Q 040667 75 HMIKKKSKEAFIAFKE 90 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~ 90 (207)
.-..|+|++|+..|..
T Consensus 21 ~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 3466677777666543
No 272
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=81.87 E-value=1.1 Score=25.89 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=17.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYETSKILWEAAMAL 26 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~ 26 (207)
+|+-+...|||+.|+.+|+.++..
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHH
Confidence 567777778888888888777653
No 273
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=80.74 E-value=16 Score=28.40 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
....|..+|..+.+.+++.+|..++.++-..-.
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence 445566667777777777777777777655443
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=77.44 E-value=6.5 Score=27.15 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=23.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP 31 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~ 31 (207)
+|..++..++|.+|..++.+|+...|...
T Consensus 20 lGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 20 VGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 57778888888888888888888877654
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.31 E-value=21 Score=26.88 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHc
Q 040667 29 LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-NGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDV 107 (207)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~ 107 (207)
.++..+..+|..|++.+++.+|..+|- +..+ .+..+..+-.-+...+...++--.+-+++ ..|...
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaV---------L~yL~l 200 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCARAV---------LPYLLV 200 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHH---------HHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHH---------HHHHHh
Confidence 345566666666666666666666651 1111 12333333333333333222222222221 235667
Q ss_pred CCHHHHHHHHHHHH
Q 040667 108 GNIGQALEAVQMVL 121 (207)
Q Consensus 108 ~~~~~A~~~~~~al 121 (207)
++...|...+....
T Consensus 201 ~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 201 ANVRAANTAYRIFT 214 (336)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 78887777655444
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.72 E-value=5.4 Score=22.57 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
-..+|..+...|++++|..+|-+|+.+.|+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356788888899999999999999999886
No 277
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=76.08 E-value=3.7 Score=24.60 Aligned_cols=26 Identities=23% Similarity=0.320 Sum_probs=13.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSS 28 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p 28 (207)
+|..+...|+++.|+.+|-+|+...|
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 44555555555555555555555544
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.37 E-value=14 Score=24.06 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=51.4
Q ss_pred ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040667 44 ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQ 118 (207)
Q Consensus 44 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~ 118 (207)
.|+...-+..|-+.- . +....-.--.....+|+-++--+.+...+ ++..+..+|.+|.+.|+..+|-+.+.
T Consensus 74 C~NlKrVi~C~~~~n---~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVINN---T-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHTT---C-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc---c-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 455566666554422 1 22222222235567777777777777754 58889999999999999999999999
Q ss_pred HHHhcC
Q 040667 119 MVLNMT 124 (207)
Q Consensus 119 ~al~~~ 124 (207)
+|-+..
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 887755
No 279
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=73.28 E-value=7.9 Score=30.49 Aligned_cols=81 Identities=10% Similarity=-0.060 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHccC-----CC---C-----H---HHHHHHHHHHHHhcCHHHHHHHHHHHh---------------cH
Q 040667 46 DVEKALDGFTRAVQLD-----PD---N-----G---EAWNNIACLHMIKKKSKEAFIAFKEAL---------------YW 94 (207)
Q Consensus 46 ~~~~A~~~~~~a~~~~-----p~---~-----~---~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~ 94 (207)
..+++...+.++.... |+ + . .....+-.+|++.++..-+...++..- ..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4566777777766542 11 1 0 123455678899999888877775432 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNM-TNN 126 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~ 126 (207)
...+.+|.+++..++|.+|.+.+..|++. .|.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 67888999999999999999999999998 775
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.11 E-value=5.2 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=14.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMA 25 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~ 25 (207)
+..+...|+|++|+++.+++..
T Consensus 22 Ae~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 4566677777777777666543
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.61 E-value=11 Score=25.96 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
...+.+|.+++..++|.+|.+.+..|+...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3567899999999999999999999999988654
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.62 E-value=19 Score=23.91 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIV 138 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 138 (207)
.+|..++... ++ +...|.-.. .+..|...|..+...|++.+|..+|...++.... ....+....
T Consensus 67 klWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~---P~~~L~~~~ 137 (164)
T 2wvi_A 67 NLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE---PLERLQSQH 137 (164)
T ss_dssp HHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---SHHHHHHHH
T ss_pred HHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHH
Confidence 4566555442 33 555555544 7788899999999999999999999999987754 455555444
Q ss_pred HHHhcc
Q 040667 139 LDLEGR 144 (207)
Q Consensus 139 ~~~~~~ 144 (207)
..+...
T Consensus 138 ~~F~~R 143 (164)
T 2wvi_A 138 RQFQAR 143 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=70.93 E-value=20 Score=23.77 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=42.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCC--H-HHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHH
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDPDN--G-EAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIG 111 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (207)
+.-|..++..|+|=+|-+.++.+....+.. . ..|..+..+ ...|..+.+.|+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~-----------------------lAvAl~H~~rgN~~ 92 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQV-----------------------AAGAYKHFDFEDDD 92 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHH-----------------------HHHHHHHHHHCCHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-----------------------HHHHHHHHHhCCHH
Confidence 456777788899999999999988776543 1 222222210 22344566777777
Q ss_pred HHHHHHHHHHh
Q 040667 112 QALEAVQMVLN 122 (207)
Q Consensus 112 ~A~~~~~~al~ 122 (207)
-|...+.+++.
T Consensus 93 GA~~ll~~Al~ 103 (161)
T 2ijq_A 93 GMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.49 E-value=11 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
..+-..+..+.+.|+|++|+++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566777778888888887776654
No 285
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.65 E-value=37 Score=26.00 Aligned_cols=85 Identities=11% Similarity=-0.045 Sum_probs=60.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHccC-------C----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------
Q 040667 38 GAAALKARDVEKALDGFTRAVQLD-------P----------DNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------- 92 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~-------p----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 92 (207)
..+.....+.++|++.+.+....- + ....+...++..|...|+.++|...++++-
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556778899999988764321 0 113456677888889999999998888876
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 93 -----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 93 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
....+...+..+...+++..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444556667777888888887777766665
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.40 E-value=26 Score=24.17 Aligned_cols=74 Identities=8% Similarity=-0.027 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCC------C---hHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 18 ILWEAAMALSSL------Y---PDGWFALGAAALKARDVEKALDGFTRAVQ--LDPDNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 18 ~~~~~al~~~p~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
..+++++....+ + ...|..++..+ ..+...++.+.|.-... +....+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466666664322 2 23455555544 13335677777776554 445678889999999999999999999
Q ss_pred HHHHHh
Q 040667 87 AFKEAL 92 (207)
Q Consensus 87 ~~~~~~ 92 (207)
+|+.++
T Consensus 137 Vy~~GI 142 (202)
T 3esl_A 137 LLELGA 142 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 287
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=66.90 E-value=12 Score=30.95 Aligned_cols=55 Identities=16% Similarity=0.046 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
-.+.....|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|--.+.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 4455667788888899999999999999999999999999999998888865433
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.23 E-value=25 Score=23.06 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=46.7
Q ss_pred HHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 82 KEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 82 ~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
+++...|.-.. .+..|...|..+...|++.+|...|...++.... ....+......+...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~---P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE---PREFLQQQYRLFQTR 148 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---SHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHH
Confidence 44667776666 7788899999999999999999999999997654 566666666555544
No 289
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.91 E-value=26 Score=23.21 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--h-HHH------HHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLY--P-DGW------FALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~--~-~~~------~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
|..++..|+|=+|-+.++.+-...+.. . ..+ ...|..+.+.|+...|...+.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 556778889988888888887765543 1 122 2223344556777777777776655
No 290
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=64.93 E-value=45 Score=25.55 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHccC--HHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 30 YPDGWFALGAAALKARD--VEKALDGFTRAVQL-----DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.|.++-+||++-....- ...++..|.+++.. ...+..-+..+|-.+++.+++.+|+..+-.+-
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 45555566655443221 12266666666654 23344556778889999999999999887765
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=64.24 E-value=9.7 Score=21.85 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...+|+-|...|+|+.|+.+|+.++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3456677777778888877777665
No 292
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=63.36 E-value=73 Score=27.83 Aligned_cols=118 Identities=11% Similarity=-0.012 Sum_probs=65.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP--DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
||.++.-.++ +++...+...+..+.... .+-+.+|.++.-.|+-+-....+..+.+...+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 4555555554 456677777776443211 2445678888888887766666666665433333323344444445666
Q ss_pred HHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 81 SKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 81 ~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
.+.+-...+... ...+-..+|..|...|+...-...+..+.
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 665555544433 33344556777778888543333554444
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=62.70 E-value=10 Score=21.97 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhC
Q 040667 13 YETSKILWEAAMALS 27 (207)
Q Consensus 13 ~~~A~~~~~~al~~~ 27 (207)
.++|+.+..+|++.+
T Consensus 16 ~~~Ai~lv~~Ave~D 30 (83)
T 2w2u_A 16 EEMARKYAINAVKAD 30 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888887663
No 294
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.32 E-value=10 Score=22.68 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..+|..+...|+++.|+.+|-+|+.+.|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566666666677777766667666664
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.17 E-value=13 Score=29.30 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHhCCC-------Ch-----H----HHHHHHHHHHHccCHHHHHHHHHHHHccCC--C--------CH
Q 040667 12 GYETSKILWEAAMALSSL-------YP-----D----GWFALGAAALKARDVEKALDGFTRAVQLDP--D--------NG 65 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~-------~~-----~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~--------~~ 65 (207)
..+++...+.++....-. .. . ....+-.+|+++++..-+...++..-...+ . -.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456677777777775211 11 1 123456788999999988888865433221 1 13
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...+-+|..+...++|.+|.+.+..|+
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 668889999999999999999888777
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=61.59 E-value=39 Score=23.73 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHH---ccC--HHHHHHHHHHHHccCCC------C---HHHHHHHHHHH
Q 040667 13 YETSKILWEAAMAL--SSLYP-DGWFALGAAALK---ARD--VEKALDGFTRAVQLDPD------N---GEAWNNIACLH 75 (207)
Q Consensus 13 ~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~---~~~--~~~A~~~~~~a~~~~p~------~---~~~~~~l~~~~ 75 (207)
.......|++.|.. ..++| ..|......... .|. -..-...+++++....+ + ..+|..++..
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~- 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY- 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc-
Confidence 34455566666664 23344 334332222211 121 11234566666654332 2 3455555542
Q ss_pred HHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 76 MIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
.+++...|.-.. .+..|...|..+...|++.+|..+|...++.... ....+......+...
T Consensus 130 -----~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~---P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 -----IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK---PFLRFQQKYQQFTHR 197 (223)
T ss_dssp -----CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB---SHHHHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHH
Confidence 245556665555 7888999999999999999999999999987654 456665555555544
No 297
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=60.91 E-value=11 Score=21.93 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHh
Q 040667 14 ETSKILWEAAMAL 26 (207)
Q Consensus 14 ~~A~~~~~~al~~ 26 (207)
..|+.+..+|+..
T Consensus 14 ~~A~~lv~~Ave~ 26 (86)
T 4a5x_A 14 TAAATVLKRAVEL 26 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666777665
No 298
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=57.63 E-value=38 Score=22.37 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=33.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHH-HHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSL--YPDGWFALGAAALKARDVE-KALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
...|-..+|.+.+..++.. +|. .....+.+|..|.....+. +-.+.....+.+..+. .+.+=+++...|++
T Consensus 16 ~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde---~yL~YWIyiGRg~~ 89 (161)
T 2ynq_A 16 TELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDE---QYMLYWIYIGRSQS 89 (161)
T ss_dssp HHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCH---HHHHHHHHHHHTCH
T ss_pred HHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCH---HHHHHHHHHcCCch
Confidence 3444555555555544331 222 1234455666665554432 2233333223222211 11122334445666
Q ss_pred HHHHHHHH
Q 040667 82 KEAFIAFK 89 (207)
Q Consensus 82 ~~A~~~~~ 89 (207)
++|+..-+
T Consensus 90 ~eAlDiA~ 97 (161)
T 2ynq_A 90 EEALELAR 97 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 299
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.01 E-value=27 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHhcCHHHHHHHHHHHh
Q 040667 73 CLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~ 92 (207)
.-.-..|++++|+..|..++
T Consensus 27 ve~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33456777777777665443
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=54.78 E-value=75 Score=24.89 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHcc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 50 ALDGFTRAVQL-----DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 50 A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
++..|.+++.. ...+..-|..+|-.+++.+++.+|+..+-.+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 55555555543 22344456677888889999999998887665
No 301
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=53.07 E-value=38 Score=28.02 Aligned_cols=41 Identities=7% Similarity=-0.065 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcC
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVG 108 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~ 108 (207)
....+...+..|+|.-|.+....++ +..+...++.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555 4444444444444443
No 302
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.02 E-value=18 Score=21.35 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHhC
Q 040667 12 GYETSKILWEAAMALS 27 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~ 27 (207)
..+.|+.++.+|+..+
T Consensus 11 ~l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888888887653
No 303
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=50.78 E-value=29 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=16.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALS 27 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~ 27 (207)
|..++..++|.+|..+|+++....
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcchhHHHHHHHHHHccc
Confidence 455667777777777777776553
No 304
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=50.78 E-value=20 Score=20.65 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.++|+.++.+|+..+ ..|++++|+..|..+++
T Consensus 10 l~~A~~l~~~Av~~D---------------~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDLD---------------TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHH
Confidence 567788888876542 23555555555555544
No 305
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=49.05 E-value=45 Score=26.02 Aligned_cols=46 Identities=22% Similarity=0.050 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 14 ETSKILWEAAMALSSLY--------PDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+..+.-++.|+..-|.. ..++..++.+|+..++|++|....++++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 44555566666654432 34677899999999999999999998874
No 306
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.47 E-value=93 Score=23.79 Aligned_cols=87 Identities=11% Similarity=-0.077 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC-------C--------CC--hHHHHHHHHHHHHccCHHHHHHHHHHHHcc-------C
Q 040667 6 SAYNRGGYETSKILWEAAMALS-------S--------LY--PDGWFALGAAALKARDVEKALDGFTRAVQL-------D 61 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~-------p--------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~ 61 (207)
+.....+.++|+.++.+....- + .. ..+...++..+...|+.++|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678899999988764321 0 01 234457888999999999999999988643 1
Q ss_pred C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 62 P-DNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 62 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
| -....+...+..+...+++..+...+-..+
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 123445566777777888877665544433
No 307
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=47.12 E-value=1e+02 Score=24.15 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHccC--HHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 30 YPDGWFALGAAALKARD--VEKALDGFTRAVQL-----DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.|.++.+||++-..... ...++..|++++.. ...+..-|..+|-.+++.+++.+|+..+-.+-
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 45555556655533211 12355666666653 23344556677888889999999999887765
No 308
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.81 E-value=88 Score=23.34 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCC----CCH----HH--------HHHHHHHHHH-hcC-----HHHHHHHHHHHh
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDP----DNG----EA--------WNNIACLHMI-KKK-----SKEAFIAFKEAL 92 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p----~~~----~~--------~~~l~~~~~~-~~~-----~~~A~~~~~~~~ 92 (207)
...|.-+...|++++|+..|+.++..-| ++. ++ .|.+|..... ... .++-.+.++-+.
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAA 185 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAA 185 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHH
Confidence 4567788899999999999999987654 221 11 2223322211 111 133333344333
Q ss_pred -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 -----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...++..--...++.++|..|..+.++.+++.|.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2222232334567889999999999999999884
No 309
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=46.76 E-value=69 Score=25.35 Aligned_cols=46 Identities=26% Similarity=0.030 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCC-----------ChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 14 ETSKILWEAAMALSSL-----------YPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+.-+.-++.|+..-|. ...++..++.+|+..++|++|....++++.
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444455555554442 124677899999999999999999999874
No 310
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=45.98 E-value=48 Score=25.94 Aligned_cols=46 Identities=15% Similarity=-0.054 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 14 ETSKILWEAAMALSSLY--------PDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+.-+.-++.|+..-|.. ..++..++.+++..|+|++|....++++.
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34455555666554432 34677899999999999999999998875
No 311
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=44.67 E-value=79 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcc
Q 040667 37 LGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
++.-+...|.|+.|...+++-+-.
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~Gi 45 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQVGV 45 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHSCB
T ss_pred cHHHHHHccCHHHHHHHHHHHhCc
Confidence 577788899999999999886543
No 312
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.79 E-value=25 Score=21.83 Aligned_cols=32 Identities=31% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.+.|+.++.+|+..+ ..|+|++|+.+|..+++
T Consensus 15 l~kAi~lv~~Ave~D---------------~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQED---------------KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHH
Confidence 568888899987542 23555555555555554
No 313
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=40.75 E-value=55 Score=25.71 Aligned_cols=46 Identities=17% Similarity=0.016 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 14 ETSKILWEAAMALSSLY--------PDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+.-+.-++.|+..-|.. ..++..++.+|+..++|++|....++++.
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34455556666554432 34677899999999999999999999875
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.59 E-value=85 Score=20.81 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHHHHc--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 50 ALDGFTRAVQ--LDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 50 A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+.++|.-... +....+..|...|..+...|++.+|.++|+.++
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555443 445678889999999999999999999999999
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.88 E-value=29 Score=23.92 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=21.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
-.++++.|.+++|.+.+++...-++.+......|..+=.+.+-+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 44556677777777777776666555544444444443333333
No 316
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.16 E-value=90 Score=24.32 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 94 WQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
..++..++++|+..|++++|....++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34555566666666666666666666654
No 317
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=35.44 E-value=96 Score=20.50 Aligned_cols=82 Identities=7% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhcCHHH-HHHHHHHHh--cHHHHHHHHHHHHHcCCH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIKKKSKE-AFIAFKEAL--YWQLWENYSHVALDVGNI 110 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~--~~~~~~~l~~~~~~~~~~ 110 (207)
.-+...+-..+|.+.+..+++ .+|. .....+.+|..|....++.+ ..+.....+ ...-.+.+-+++...|++
T Consensus 13 i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGRg~~ 89 (161)
T 2ynq_A 13 IQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGRSQS 89 (161)
T ss_dssp HHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcCCch
Confidence 345666778899999999875 3443 35778999999999988763 333333334 333344455678888999
Q ss_pred HHHHHHHHHH
Q 040667 111 GQALEAVQMV 120 (207)
Q Consensus 111 ~~A~~~~~~a 120 (207)
++|+......
T Consensus 90 ~eAlDiA~~L 99 (161)
T 2ynq_A 90 EEALELARTI 99 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9998877643
No 318
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=34.54 E-value=1.1e+02 Score=23.95 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 94 WQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
..++..+|++|+..|++++|....++++.
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34555566666666666666666666664
No 319
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=40.00 E-value=8.7 Score=31.91 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=26.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDV 47 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 47 (207)
|...+..|+|.-|..+.+.++..+|++..+...++.+|.++|.-
T Consensus 468 a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 511 (668)
T 2yhe_A 468 MRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQ 511 (668)
Confidence 34445566666666666666666666666666666666655533
No 320
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=33.56 E-value=1e+02 Score=24.03 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 94 WQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
..++..+|++|+..|++++|.....+++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34555566666666666666666666654
No 321
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=32.43 E-value=1.3e+02 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
++..+|++|+..+++++|....++++.
T Consensus 205 A~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 205 VLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444455555555555555555555543
No 322
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=31.57 E-value=87 Score=24.67 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 14 ETSKILWEAAMALSSL--------YPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+.-+.-++.|+..-|. ...++..++.+|+..++|++|....++++.
T Consensus 155 ~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 155 AQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444555556554442 124677889999999999999999998874
No 323
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.86 E-value=1.6e+02 Score=23.13 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
.++..++.+++..|+|++|....++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 36677889999999999999999988853
No 324
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=30.73 E-value=1e+02 Score=19.42 Aligned_cols=18 Identities=6% Similarity=-0.064 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 040667 6 SAYNRGGYETSKILWEAA 23 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~a 23 (207)
.++..+|.+..+..++..
T Consensus 49 lyf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHHH
Confidence 344555555555554333
No 325
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.68 E-value=80 Score=21.79 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=20.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 100 YSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 100 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
.-.++++.|.+++|.+.+++....++++..
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 345678999999999999999888766333
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.16 E-value=1.4e+02 Score=20.91 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
-.++++.|.|++|.+.+++.+.-+|.+......|..+=.+.+-+..-+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~l 168 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVI 168 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHH
Confidence 344566777777777777776665555555555555544444444333
No 327
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=29.92 E-value=1.3e+02 Score=23.53 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 040667 93 YWQLWENYSHVALDVG-NIGQALEAVQMVLNM 123 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 123 (207)
...++...|.++.+.| +..+|...+.++.+.
T Consensus 320 ~aEvyLi~AEA~~~~gg~~~~A~~~lN~vR~r 351 (460)
T 3snx_A 320 SAEMYLIEAEAKVRDGVALDQAVAPLNTLRTA 351 (460)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6788999999999999 999999988877653
No 328
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=29.05 E-value=1.5e+02 Score=23.62 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
++..++.+++..++|++|....++++.
T Consensus 184 A~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 184 AYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666654
No 329
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=28.34 E-value=40 Score=13.99 Aligned_cols=11 Identities=27% Similarity=0.923 Sum_probs=7.6
Q ss_pred HHHHHHHhhhC
Q 040667 197 FLGKILQQFAH 207 (207)
Q Consensus 197 ~l~~l~~q~~~ 207 (207)
++|+++..+++
T Consensus 2 lfgklikkfgr 12 (26)
T 2g9p_A 2 LFGKLIKKFGR 12 (26)
T ss_dssp HHHHHHHHHTS
T ss_pred cHHHHHHHHhH
Confidence 46788877754
No 330
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.14 E-value=3.6e+02 Score=24.82 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAAL 42 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 42 (207)
.-+.+++.++|++.+..+|++..++..+-..+.
T Consensus 1120 k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1120 KCELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 335678889999999999999998877666554
No 331
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.67 E-value=1.8e+02 Score=25.53 Aligned_cols=89 Identities=15% Similarity=0.008 Sum_probs=47.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH----HHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE----AWNNIACLHMI 77 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~ 77 (207)
.||.+++-.|+-+....++.-+.+...+...-...+|..+...|+.+.+....+..... .++. +-..+|.+|..
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcC
Confidence 36777777888666666665555433222222233444444566666666665554432 2332 23456777777
Q ss_pred hcCHHHHHHHHHHHh
Q 040667 78 KKKSKEAFIAFKEAL 92 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~ 92 (207)
.|+...-...+..+.
T Consensus 573 TGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 573 TGNNSAVKRLLHVAV 587 (963)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc
Confidence 888543333555554
No 332
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.29 E-value=2.1e+02 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=22.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 102 HVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...++.++|..|..+.++.+++.|.
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4567889999999999999999985
No 333
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=24.85 E-value=64 Score=18.68 Aligned_cols=33 Identities=6% Similarity=-0.075 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 040667 109 NIGQALEAVQMVLNMTNNKRIDTELLERIVLDL 141 (207)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 141 (207)
...+++....++++.+|+++..++.+...+..+
T Consensus 25 ~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~ey 57 (85)
T 2ca5_A 25 TLQGELTLALDKLAKNPSNPQLLAEYQSKLSEY 57 (85)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344566666677778898776666666555544
No 334
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=24.74 E-value=63 Score=19.10 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 110 IGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
..+++....++++.+|+++..++.+....+.|.-.
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~ 66 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLY 66 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44555555666778999888888887777765543
No 335
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=22.69 E-value=1.3e+02 Score=19.19 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHH
Q 040667 11 GGYETSKILWEAAM 24 (207)
Q Consensus 11 ~~~~~A~~~~~~al 24 (207)
++.+++..++++|.
T Consensus 4 ~~~ee~~~wl~~A~ 17 (141)
T 3o10_A 4 GNPVEARRWLRQAR 17 (141)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 34445555554443
No 336
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=22.55 E-value=1.8e+02 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=11.0
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 040667 106 DVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~ 123 (207)
-.++.++|....++++.-
T Consensus 209 Iln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 209 LLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 456666666666666554
No 337
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=20.96 E-value=2.4e+02 Score=22.50 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
++..++.+++..++|++|....++++.
T Consensus 200 A~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 200 ALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455666666666777777766666654
No 338
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.63 E-value=2.3e+02 Score=19.92 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=18.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 102 HVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++++.|.+++|.+.+++.+..+|.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s 146 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPT 146 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGG
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCC
Confidence 3456778888888888887776654
No 339
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.33 E-value=2.5e+02 Score=20.24 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=21.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL 29 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~ 29 (207)
+|...-+.++|++.+.+.++++..++.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~e 63 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVE 63 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 456677889999999999998887664
Done!