BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040668
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 29.6 bits (65), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 30/50 (60%)

Query: 52  VYIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAIS 101
           V+++E++ L ++A PM+   ++Q  +  +  +M G  G+  L++ A+  S
Sbjct: 8   VFLKEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSS 57


>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
 pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
 pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
 pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
 pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
 pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
 pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
 pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
 pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
          Length = 1221

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 4  VPASVRDKEEMDKGLLAKDEVEGREDLTVLLAKDKVECGEDLTVVTADVYIEEVKRL 60
          +P S+  KEE+D  +++KD V G   L   L   + E            ++EEV R+
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--------MVQKFVEEVLRI 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,705,277
Number of Sequences: 62578
Number of extensions: 88534
Number of successful extensions: 220
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 2
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)