Query 040668
Match_columns 111
No_of_seqs 181 out of 1127
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1347 Uncharacterized membra 99.1 1.5E-10 3.3E-15 97.0 7.4 59 53-111 23-81 (473)
2 COG0534 NorM Na+-driven multid 99.0 2.3E-09 5E-14 88.7 7.9 54 53-106 12-65 (455)
3 PRK10367 DNA-damage-inducible 98.6 8.2E-08 1.8E-12 78.9 7.2 52 54-105 5-57 (441)
4 PRK00187 multidrug efflux prot 98.6 2.4E-07 5.2E-12 76.3 8.2 53 54-106 6-58 (464)
5 PRK10189 MATE family multidrug 98.5 7.9E-07 1.7E-11 73.8 8.5 52 55-106 26-77 (478)
6 PRK01766 multidrug efflux prot 98.4 2.3E-06 4.9E-11 69.5 8.4 54 52-105 6-59 (456)
7 PRK09575 vmrA multidrug efflux 98.2 6.3E-06 1.4E-10 67.5 7.5 50 56-105 10-60 (453)
8 PRK00187 multidrug efflux prot 98.0 2.3E-05 5E-10 64.6 7.9 53 54-106 232-284 (464)
9 PRK01766 multidrug efflux prot 97.6 0.00019 4.2E-09 58.2 7.2 53 54-106 235-287 (456)
10 TIGR00797 matE putative efflux 97.0 0.0037 8.1E-08 48.1 7.3 52 54-105 212-263 (342)
11 PF01554 MatE: MatE; InterPro 96.8 0.00045 9.7E-09 47.8 1.1 42 66-107 1-42 (162)
12 PRK10367 DNA-damage-inducible 96.6 0.012 2.6E-07 48.5 7.7 53 55-107 229-281 (441)
13 PF01943 Polysacc_synt: Polysa 96.3 0.032 6.9E-07 40.8 8.2 54 54-107 201-255 (273)
14 PRK10189 MATE family multidrug 96.3 0.019 4.1E-07 47.8 7.6 53 54-106 255-307 (478)
15 COG0534 NorM Na+-driven multid 96.3 0.017 3.7E-07 48.0 7.1 54 54-107 237-290 (455)
16 TIGR00797 matE putative efflux 96.0 0.019 4E-07 44.2 5.6 41 66-106 1-41 (342)
17 TIGR01695 mviN integral membra 95.9 0.031 6.6E-07 45.5 7.0 52 54-105 219-270 (502)
18 PRK15099 O-antigen translocase 95.5 0.097 2.1E-06 42.0 8.1 51 54-104 211-262 (416)
19 TIGR02900 spore_V_B stage V sp 95.4 0.056 1.2E-06 43.7 6.6 46 61-106 2-48 (488)
20 PRK10459 colanic acid exporter 94.6 0.099 2.1E-06 42.7 6.0 52 54-105 203-255 (492)
21 PRK09575 vmrA multidrug efflux 94.6 0.18 3.8E-06 41.4 7.5 53 54-106 230-283 (453)
22 PF13440 Polysacc_synt_3: Poly 94.2 0.4 8.7E-06 34.8 8.0 48 59-106 184-232 (251)
23 TIGR01695 mviN integral membra 93.3 0.24 5.2E-06 40.3 5.8 46 60-105 2-49 (502)
24 PF03023 MVIN: MviN-like prote 91.8 0.85 1.8E-05 37.8 7.4 51 55-105 195-245 (451)
25 TIGR02900 spore_V_B stage V sp 90.7 1.2 2.5E-05 36.1 6.9 35 54-88 221-255 (488)
26 COG2244 RfbX Membrane protein 90.3 0.64 1.4E-05 37.7 5.2 45 53-97 208-253 (480)
27 COG0728 MviN Uncharacterized m 65.4 28 0.0006 30.3 6.9 50 55-104 229-278 (518)
28 PF02487 CLN3: CLN3 protein; 65.1 24 0.00052 29.6 6.3 36 49-84 234-271 (402)
29 PF01943 Polysacc_synt: Polysa 57.1 57 0.0012 23.4 6.4 46 62-107 3-49 (273)
30 PF10329 DUF2417: Region of un 49.5 1.3E+02 0.0027 23.6 9.3 80 28-109 1-95 (232)
31 PRK10459 colanic acid exporter 40.2 1E+02 0.0022 25.1 6.0 47 60-106 7-54 (492)
32 PF07260 ANKH: Progressive ank 36.2 1.7E+02 0.0036 24.5 6.6 51 55-105 8-61 (345)
33 KOG1347 Uncharacterized membra 34.3 1.4E+02 0.0031 25.3 6.1 51 54-104 243-295 (473)
34 PRK15099 O-antigen translocase 30.5 2.8E+02 0.006 22.1 7.0 43 64-106 7-50 (416)
35 COG2244 RfbX Membrane protein 29.6 1.1E+02 0.0023 24.7 4.6 51 56-106 4-55 (480)
36 PF03616 Glt_symporter: Sodium 28.8 2.1E+02 0.0046 23.5 6.2 41 56-96 297-339 (368)
37 PF10797 YhfT: Protein of unkn 28.2 39 0.00084 28.8 1.8 29 82-110 34-62 (420)
38 KOG3880 Predicted small molecu 27.4 2.5E+02 0.0054 23.8 6.3 28 51-78 240-267 (409)
39 PF11712 Vma12: Endoplasmic re 25.6 1E+02 0.0022 21.7 3.4 16 72-87 82-97 (142)
40 PRK15120 lipopolysaccharide AB 25.6 2.3E+02 0.0051 22.6 5.8 41 55-95 46-87 (366)
41 TIGR00659 conserved hypothetic 25.3 3.3E+02 0.0071 21.2 6.4 36 53-88 76-111 (226)
42 PF04142 Nuc_sug_transp: Nucle 24.9 2E+02 0.0043 22.1 5.1 26 51-77 8-33 (244)
43 TIGR00210 gltS sodium--glutama 23.9 4.1E+02 0.0089 22.2 7.1 41 56-96 295-337 (398)
44 PF11830 DUF3350: Domain of un 21.2 1.1E+02 0.0024 19.0 2.4 14 52-65 26-39 (56)
No 1
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=96.99 Aligned_cols=59 Identities=39% Similarity=0.572 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhhcC
Q 040668 53 YIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLL 111 (111)
Q Consensus 53 ~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt~~~il 111 (111)
.++|.|+++++|.|+++.+++||+.++++++|+||+|+.+||+++++++++|+++|+++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~ 81 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSIL 81 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHh
Confidence 47999999999999999999999999999999999999999999999999999999874
No 2
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.96 E-value=2.3e-09 Score=88.69 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 53 YIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 53 ~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
...+.|+++++|+|+++++++|.+++++|++|+||+|+++|||++++++++++.
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~ 65 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI 65 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999988765
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.64 E-value=8.2e-08 Score=78.86 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=47.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHL-GELFLSSTAIAISFSAV 105 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~L-G~~~LAavsLa~~~~~v 105 (111)
++|.|+++++++|++++++++.+.+++|++|+||+ |+.++||++++.++.++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~ 57 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF 57 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999 67799999999776554
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.58 E-value=2.4e-07 Score=76.27 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=50.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
+++.|+++++++|.+++++++++.+++|++|+||+|+.++||++++..+.+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~ 58 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV 58 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999987775
No 5
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.47 E-value=7.9e-07 Score=73.84 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=48.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
...|+++++++|++++++++.+.+++|++|+||+|+.++||++++.++.++.
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~ 77 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI 77 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999887653
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.35 E-value=2.3e-06 Score=69.47 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 040668 52 VYIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAV 105 (111)
Q Consensus 52 ~~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~v 105 (111)
.++++.|+++++++|++++++++++.+++|++|+||+|+.++||++++..+.++
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~ 59 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP 59 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999998776543
No 7
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.18 E-value=6.3e-06 Score=67.48 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHH
Q 040668 56 EVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHL-GELFLSSTAIAISFSAV 105 (111)
Q Consensus 56 E~k~ll~lA~Plils~llq~~l~~vd~i~vG~L-G~~~LAavsLa~~~~~v 105 (111)
-.|+++++++|++++++++.+.+++|++|+||+ |+.++||+++++.+.++
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~ 60 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI 60 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999995 99999999999887654
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.02 E-value=2.3e-05 Score=64.56 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=49.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
+...|+++|+++|+++.++++....+++++++||+|+.++||.++++++.+++
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~ 284 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA 284 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998887654
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=97.64 E-value=0.00019 Score=58.24 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
++..|+++++++|++++++++.....++..+++++|+.++||.+++..+.++.
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~ 287 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL 287 (456)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998887765
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=96.97 E-value=0.0037 Score=48.11 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAV 105 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~v 105 (111)
++..|+++++++|+++.+++......++.++++++|..++++.+.+..+.++
T Consensus 212 ~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~ 263 (342)
T TIGR00797 212 WEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESL 263 (342)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999988777664
No 11
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=96.84 E-value=0.00045 Score=47.83 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Q 040668 66 PMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 66 Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt~ 107 (111)
|+++.++++.+..++++.++||+|++++|+.+++..+.+++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~ 42 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILF 42 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999888764
No 12
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=96.55 E-value=0.012 Score=48.49 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=48.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt~ 107 (111)
..+|+++|+++|..+++++......+-+.+++++|+.++||-+++..+.++..
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~ 281 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTA 281 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988876653
No 13
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=96.34 E-value=0.032 Score=40.75 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=48.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHh
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHL-GELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~L-G~~~LAavsLa~~~~~vt~ 107 (111)
+++.|++++.++|..++.++.....-+|.+++|+. |.++++-.+++..+..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~ 255 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS 255 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999995 8889999999888876643
No 14
>PRK10189 MATE family multidrug exporter; Provisional
Probab=96.31 E-value=0.019 Score=47.84 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=47.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
++..|+++|+++|..+.+++.....++-+.+++++|+.++||.+++..+.++.
T Consensus 255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~ 307 (478)
T PRK10189 255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI 307 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999888888999999999999999988776654
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=96.28 E-value=0.017 Score=48.03 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt~ 107 (111)
++..|+++++++|..+.+++.....++-+.+++++|+..+||-+++..+.++..
T Consensus 237 ~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~ 290 (455)
T COG0534 237 RKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIF 290 (455)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999988877653
No 16
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=95.99 E-value=0.019 Score=44.22 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 040668 66 PMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 66 Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt 106 (111)
|+++++++....+++|++++|++|+.++|+.+++..+.++.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~ 41 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL 41 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH
Confidence 78999999999999999999999999999999998876644
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=95.94 E-value=0.031 Score=45.45 Aligned_cols=52 Identities=13% Similarity=-0.010 Sum_probs=46.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAV 105 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~v 105 (111)
+++.|+++++++|..+++++......+|..+.+++|..++++.+.+..+.++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~ 270 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQL 270 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999888999999999988877654
No 18
>PRK15099 O-antigen translocase; Provisional
Probab=95.45 E-value=0.097 Score=41.99 Aligned_cols=51 Identities=12% Similarity=-0.058 Sum_probs=46.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVG-HLGELFLSSTAIAISFSA 104 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG-~LG~~~LAavsLa~~~~~ 104 (111)
++..|+++++++|.+++++.......++..++| ++|..++|+.+.+..+.+
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~ 262 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISD 262 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHH
Confidence 356799999999999999999999999999997 899999999998888744
No 19
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=95.41 E-value=0.056 Score=43.66 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Q 040668 61 GSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 61 l~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~vt 106 (111)
+|-+.|.+++++++...+++++++++| +|++++++++++.++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~ 48 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF 48 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH
Confidence 466899999999999999999999999 6999999999998876653
No 20
>PRK10459 colanic acid exporter; Provisional
Probab=94.61 E-value=0.099 Score=42.72 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=46.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAV 105 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~v 105 (111)
+++.|+++++++|+++++++.+..+-+|.+++|+ +|+.+++..+.|..+.++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~ 255 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATV 255 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHH
Confidence 3568999999999999999999999999999999 588899998888877654
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=94.60 E-value=0.18 Score=41.41 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=45.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGE-LFLSSTAIAISFSAVT 106 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~-~~LAavsLa~~~~~vt 106 (111)
+...|+++++++|..+.+++.....++-..+++++|+ .++||.++++.+.+++
T Consensus 230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~ 283 (453)
T PRK09575 230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY 283 (453)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3567999999999999999988888888888999996 5899999988776653
No 22
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=94.23 E-value=0.4 Score=34.80 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=43.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Q 040668 59 RLGSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 59 ~ll~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~vt 106 (111)
++++.+.|..+++++....+-+|.++++. +|.++++-.+.+..+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~ 232 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLP 232 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999 9999999999988887743
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=93.27 E-value=0.24 Score=40.27 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=40.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHH
Q 040668 60 LGSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFL-SSTAIAISFSAV 105 (111)
Q Consensus 60 ll~lA~Plils~llq~~l~~vd~i~vG~-LG~~~L-AavsLa~~~~~v 105 (111)
++|-+.=++++++++..++++|.+++|| +|+.++ ++++++.++.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~ 49 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNF 49 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHH
Confidence 4567777899999999999999999999 899999 799999887644
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=91.84 E-value=0.85 Score=37.80 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAV 105 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~v 105 (111)
++.|++++...|.+++...+....++|..+..++++-.+++..-|..+..+
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~l 245 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQL 245 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999988887765
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=90.67 E-value=1.2 Score=36.05 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHL 88 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~L 88 (111)
++..|+++++++|..++++.....+.+|++++|+.
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~ 255 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQR 255 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999984
No 26
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=90.31 E-value=0.64 Score=37.71 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHH
Q 040668 53 YIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTA 97 (111)
Q Consensus 53 ~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavs 97 (111)
.++..|++++.++|..++.++.+..+-+|.+++|+ +|+.+++-.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~ 253 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYS 253 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecc
Confidence 46789999999999999999999999999999998 4666666555
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=65.44 E-value=28 Score=30.26 Aligned_cols=50 Identities=16% Similarity=-0.010 Sum_probs=43.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSA 104 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~ 104 (111)
.+.|++++...|++++.-.+....++|+.+...+.+-..+...-|.-++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~q 278 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQ 278 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998777777766665554
No 28
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=65.15 E-value=24 Score=29.63 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHH
Q 040668 49 TADVYIEEVKRLGSIAGPMVAVNLSQYSL--QVISVMM 84 (111)
Q Consensus 49 ~~~~~~~E~k~ll~lA~Plils~llq~~l--~~vd~i~ 84 (111)
++.+-++-.|.++++-+|+.+.++++|.. ++.+++.
T Consensus 234 ~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~ 271 (402)
T PF02487_consen 234 SFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLL 271 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhc
Confidence 34444567888888999999999999987 3555543
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=57.14 E-value=57 Score=23.43 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHh
Q 040668 62 SIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 62 ~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~vt~ 107 (111)
|-+.=..+++++....+++...++.| +|+++.+-.++...+.++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~ 49 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLS 49 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHH
Confidence 33444677888888889999999888 69999988888887776543
No 30
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=49.55 E-value=1.3e+02 Score=23.64 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=41.7
Q ss_pred cccccccccCc----ccc---CccccccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----hccC----hHH
Q 040668 28 EDLTVLLAKDK----VEC---GEDLTVVTADVYIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMV----GHLG----ELF 92 (111)
Q Consensus 28 ~e~~pLl~~~~----~~~---~~~~~~~~~~~~~~E~k~ll~lA~Plils~llq~~l~~vd~i~v----G~LG----~~~ 92 (111)
+|.+||||+.. +.+ .+++..+..+.|+ +|.+-.+..=+++-+++=..+.+++.++- .+-| +-.
T Consensus 1 dEr~~LLp~~~~~~~~~~~l~pddp~vspynl~~--ir~~r~i~~~~l~i~~iw~v~llvS~F~s~Pg~~~Rg~~F~~~~ 78 (232)
T PF10329_consen 1 DERTPLLPNRSHDSSNDPYLSPDDPAVSPYNLWR--IRNLRWILNIFLAINFIWWVLLLVSDFFSPPGFNNRGSGFLDFD 78 (232)
T ss_pred CCcccCCCCCCcccccCCCCCCCCcccCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHH
Confidence 58899998761 111 2332222233333 33333355555566666667777777662 1112 335
Q ss_pred HHHHHHHHHHHHHHhhh
Q 040668 93 LSSTAIAISFSAVTGFS 109 (111)
Q Consensus 93 LAavsLa~~~~~vt~~~ 109 (111)
++..++++...+...|+
T Consensus 79 l~~lsl~~~~~~L~Ff~ 95 (232)
T PF10329_consen 79 LTLLSLITNLFNLWFFG 95 (232)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 66666666666655443
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=40.18 E-value=1e+02 Score=25.13 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=36.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Q 040668 60 LGSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 60 ll~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~vt 106 (111)
..+-+.=..++++....++++....+.| ||+++.+-.+++..+.++.
T Consensus 7 ~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~ 54 (492)
T PRK10459 7 TISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFA 54 (492)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHH
Confidence 4444444678888888899999888888 6999998888888776654
No 32
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=36.21 E-value=1.7e+02 Score=24.48 Aligned_cols=51 Identities=16% Similarity=-0.001 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccC--h-HHHHHHHHHHHHHHH
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLG--E-LFLSSTAIAISFSAV 105 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG--~-~~LAavsLa~~~~~v 105 (111)
..++.|.+.-+|+.++.++.-+-.-+-...+.+-. + +.||+.++|.++.-.
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf 61 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF 61 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 35678999999999998876654444444444422 2 249999999887643
No 33
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=34.25 E-value=1.4e+02 Score=25.35 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHH
Q 040668 54 IEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGE--LFLSSTAIAISFSA 104 (111)
Q Consensus 54 ~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~--~~LAavsLa~~~~~ 104 (111)
.+..+.++++++|-.+-.-++.-..-+-+++.|.++. .++++.++...+..
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~ 295 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG 295 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999996 57777766555443
No 34
>PRK15099 O-antigen translocase; Provisional
Probab=30.45 E-value=2.8e+02 Score=22.08 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Q 040668 64 AGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 64 A~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~vt 106 (111)
+.=...++++....+++.+..+.| +|+++.+.++...++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~ 50 (416)
T PRK15099 7 SLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVL 50 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH
Confidence 333455677777777777777777 6999999888777766544
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=29.55 E-value=1.1e+02 Score=24.74 Aligned_cols=51 Identities=20% Similarity=0.108 Sum_probs=41.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Q 040668 56 EVKRLGSIAGPMVAVNLSQYSLQVISVMMVGH-LGELFLSSTAIAISFSAVT 106 (111)
Q Consensus 56 E~k~ll~lA~Plils~llq~~l~~vd~i~vG~-LG~~~LAavsLa~~~~~vt 106 (111)
..+++.|-+.=..++++.+...+++....+.| +|+++.+-.+.+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~ 55 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLF 55 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHH
Confidence 45677888888889999999999999999888 7988888777777766554
No 36
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=28.78 E-value=2.1e+02 Score=23.48 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hc-cChHHHHHH
Q 040668 56 EVKRLGSIAGPMVAVNLSQYSLQVISVMMV-GH-LGELFLSST 96 (111)
Q Consensus 56 E~k~ll~lA~Plils~llq~~l~~vd~i~v-G~-LG~~~LAav 96 (111)
.++.+..++.|+++-.+.|..+..+=.+|+ -| +|+..=||+
T Consensus 297 ~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdydaav 339 (368)
T PF03616_consen 297 KLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDYDAAV 339 (368)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCChhHHH
Confidence 678899999999999999998877766665 44 577655544
No 37
>PF10797 YhfT: Protein of unknown function; InterPro: IPR019733 This entry contains predicted inner membrane proteins, whose function is unknown.
Probab=28.17 E-value=39 Score=28.78 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.1
Q ss_pred HHHHhccChHHHHHHHHHHHHHHHHhhhc
Q 040668 82 VMMVGHLGELFLSSTAIAISFSAVTGFSL 110 (111)
Q Consensus 82 ~i~vG~LG~~~LAavsLa~~~~~vt~~~i 110 (111)
-.+=||....|+|+.+++.++-.+.||+|
T Consensus 34 e~lEGrm~R~elaatsFalSfGlVigfGI 62 (420)
T PF10797_consen 34 EYLEGRMTRKELAATSFALSFGLVIGFGI 62 (420)
T ss_pred HHhcCcccHHHHHHHHHHHhhHhheEecc
Confidence 34559999999999999999999988865
No 38
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=27.41 E-value=2.5e+02 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040668 51 DVYIEEVKRLGSIAGPMVAVNLSQYSLQ 78 (111)
Q Consensus 51 ~~~~~E~k~ll~lA~Plils~llq~~l~ 78 (111)
.+.+.-+|.++++-+|+.+.++..|.++
T Consensus 240 ~e~~~~i~pll~~MvPL~~VY~~EY~IN 267 (409)
T KOG3880|consen 240 KETLKRIKPLLKYMVPLALVYFAEYFIN 267 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667889999999999999999876
No 39
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.57 E-value=1e+02 Score=21.67 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 040668 72 LSQYSLQVISVMMVGH 87 (111)
Q Consensus 72 llq~~l~~vd~i~vG~ 87 (111)
+++++++++.+++.|.
T Consensus 82 v~Nilvsv~~~~~~~~ 97 (142)
T PF11712_consen 82 VFNILVSVFAVFFAGW 97 (142)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 40
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=25.56 E-value=2.3e+02 Score=22.58 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=34.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChH-HHHH
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGEL-FLSS 95 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~-~LAa 95 (111)
..+-+++-+.+|-++.+++-.++-+...+..|+|... |+.|
T Consensus 46 ~~~~~~~~l~lP~~l~~~lP~a~lla~ll~lgrL~~~sEl~a 87 (366)
T PRK15120 46 NLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITV 87 (366)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 4566789999999999999999999999999999654 5544
No 41
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=25.32 E-value=3.3e+02 Score=21.21 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040668 53 YIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHL 88 (111)
Q Consensus 53 ~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~L 88 (111)
..+..+.+-|...|++++.+.-...++++...++++
T Consensus 76 LY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~ 111 (226)
T TIGR00659 76 LYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALL 111 (226)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999999999984
No 42
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=24.85 E-value=2e+02 Score=22.14 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 040668 51 DVYIEEVKRLGSIAGPMVAVNLSQYSL 77 (111)
Q Consensus 51 ~~~~~E~k~ll~lA~Plils~llq~~l 77 (111)
.+.+...|..+++++|..+ +.+|+.+
T Consensus 8 ~~~~~~~~~~~~~~vPA~l-Y~~qn~L 33 (244)
T PF04142_consen 8 DEVWKSPKDTLKLAVPALL-YAIQNNL 33 (244)
T ss_pred HHHHHhHHHHHHHHHHHHH-HHHHHHH
Confidence 4567788899999999988 4444433
No 43
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=23.88 E-value=4.1e+02 Score=22.24 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=32.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHH
Q 040668 56 EVKRLGSIAGPMVAVNLSQYSLQVISVMMVGH--LGELFLSST 96 (111)
Q Consensus 56 E~k~ll~lA~Plils~llq~~l~~vd~i~vG~--LG~~~LAav 96 (111)
.++.+..+++|+++-.+.|......=.+|+.. +|+..=||+
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV 337 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAV 337 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHH
Confidence 56788999999999999999999877766654 677766666
No 44
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=21.18 E-value=1.1e+02 Score=19.01 Aligned_cols=14 Identities=29% Similarity=0.036 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 040668 52 VYIEEVKRLGSIAG 65 (111)
Q Consensus 52 ~~~~E~k~ll~lA~ 65 (111)
...+|++.||+-|+
T Consensus 26 rt~eelR~LWrkAI 39 (56)
T PF11830_consen 26 RTREELRELWRKAI 39 (56)
T ss_pred cCHHHHHHHHHHHH
Confidence 35689999999886
Done!