Query 040668
Match_columns 111
No_of_seqs 181 out of 1127
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 98.2 2.1E-06 7.2E-11 66.7 6.3 54 52-105 6-59 (460)
2 3mkt_A Multi antimicrobial ext 96.8 0.00099 3.4E-08 51.5 3.8 53 55-107 235-287 (460)
3 2o8m_C Protease; NS3, NS4A, vi 15.8 42 0.0014 17.0 0.5 13 2-14 14-26 (26)
4 2imu_A Structural polyprotein 11.9 1.5E+02 0.0052 16.8 2.2 18 53-70 3-20 (46)
5 3otr_A Enolase; structural gen 5.0 5E+02 0.017 21.1 3.2 24 79-102 88-125 (452)
6 2jr2_A UPF0352 protein CPS_261 4.8 5.8E+02 0.02 15.8 2.6 21 87-107 26-46 (76)
7 3tgu_G UQCRQ, mitochondrial ub 3.8 8.3E+02 0.029 14.9 4.0 24 51-74 36-59 (81)
8 2jpq_A UPF0352 protein VP2129; 3.7 8.7E+02 0.03 15.2 2.9 21 87-107 26-46 (83)
9 2jrx_A UPF0352 protein YEJL; h 3.7 8.6E+02 0.029 15.2 2.9 22 87-108 26-47 (83)
10 2o3l_A Hypothetical protein; s 3.6 8E+02 0.027 15.1 2.7 37 51-87 18-54 (85)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.21 E-value=2.1e-06 Score=66.68 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 040668 52 VYIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAV 105 (111)
Q Consensus 52 ~~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~v 105 (111)
..+++.|+++++++|++++++++..++++|++++||+|++++|+.+++..+.++
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~ 59 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP 59 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999887654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=96.78 E-value=0.00099 Score=51.51 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=48.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Q 040668 55 EEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGHLGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 55 ~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~LG~~~LAavsLa~~~~~vt~ 107 (111)
+..|+++++++|..+++++......+|.+++|++|+.++|+.++++.+.++..
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~ 287 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF 287 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998876653
No 3
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=15.82 E-value=42 Score=17.03 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=7.8
Q ss_pred CCCCCcccChHHH
Q 040668 2 NSVPASVRDKEEM 14 (111)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (111)
|.-|+-++|+|.+
T Consensus 14 ~gkp~v~PdreVl 26 (26)
T 2o8m_C 14 SGKPAIIPKKXXX 26 (26)
T ss_dssp SCCCEECCCC---
T ss_pred CCceEEcCCcCCC
Confidence 5568888998853
No 4
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=11.93 E-value=1.5e+02 Score=16.75 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 040668 53 YIEEVKRLGSIAGPMVAV 70 (111)
Q Consensus 53 ~~~E~k~ll~lA~Plils 70 (111)
|..-+|.|-|++.|++-+
T Consensus 3 ~~Diir~irr~a~PVvsT 20 (46)
T 2imu_A 3 FKDIIRAIRRIAVPVVST 20 (46)
T ss_dssp HHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhc
Confidence 455668888899997543
No 5
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=5.02 E-value=5e+02 Score=21.12 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.5
Q ss_pred HHHHHHH--------------hccChHHHHHHHHHHHH
Q 040668 79 VISVMMV--------------GHLGELFLSSTAIAISF 102 (111)
Q Consensus 79 ~vd~i~v--------------G~LG~~~LAavsLa~~~ 102 (111)
-+|.+|+ ++||..++-|+|||..=
T Consensus 88 ~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAvak 125 (452)
T 3otr_A 88 GIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCR 125 (452)
T ss_dssp HHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHHH
Confidence 5788887 67999999999988754
No 6
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=4.77 E-value=5.8e+02 Score=15.81 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=13.5
Q ss_pred ccChHHHHHHHHHHHHHHHHh
Q 040668 87 HLGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 87 ~LG~~~LAavsLa~~~~~vt~ 107 (111)
|=-+.+|+=+.|++++.|+..
T Consensus 26 H~Ap~DLSLMvLGN~vTnlln 46 (76)
T 2jr2_A 26 EEVTPDLALMCLGNAVTNIIA 46 (76)
T ss_dssp HTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHHHHHHHHH
Confidence 334556777777777777654
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=3.80 E-value=8.3e+02 Score=14.93 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 040668 51 DVYIEEVKRLGSIAGPMVAVNLSQ 74 (111)
Q Consensus 51 ~~~~~E~k~ll~lA~Plils~llq 74 (111)
..+++--.+++..+.|.++.+++.
T Consensus 36 N~~RR~~~q~l~v~pPfi~~Y~i~ 59 (81)
T 3tgu_G 36 NVWRRFSSQVFKVAPPFLGAYLLY 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHH
Confidence 345556677889999999888764
No 8
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=3.74 E-value=8.7e+02 Score=15.22 Aligned_cols=21 Identities=14% Similarity=-0.032 Sum_probs=13.3
Q ss_pred ccChHHHHHHHHHHHHHHHHh
Q 040668 87 HLGELFLSSTAIAISFSAVTG 107 (111)
Q Consensus 87 ~LG~~~LAavsLa~~~~~vt~ 107 (111)
|=-+.+|+=+.|++++.|+..
T Consensus 26 H~Ap~DLSLMvLGNmvTNlln 46 (83)
T 2jpq_A 26 HAASPELTLMIAGNIATNVLN 46 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHh
Confidence 334556777777777777654
No 9
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=3.71 E-value=8.6e+02 Score=15.24 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=14.5
Q ss_pred ccChHHHHHHHHHHHHHHHHhh
Q 040668 87 HLGELFLSSTAIAISFSAVTGF 108 (111)
Q Consensus 87 ~LG~~~LAavsLa~~~~~vt~~ 108 (111)
|=-+.+|+=+.|++++.|+..-
T Consensus 26 H~Ap~DLSLMvLGNmvTNlln~ 47 (83)
T 2jrx_A 26 HKAPTDLSLMVLGNMVTNLINT 47 (83)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHhh
Confidence 3455677777777777777643
No 10
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=3.60 E-value=8e+02 Score=15.13 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 040668 51 DVYIEEVKRLGSIAGPMVAVNLSQYSLQVISVMMVGH 87 (111)
Q Consensus 51 ~~~~~E~k~ll~lA~Plils~llq~~l~~vd~i~vG~ 87 (111)
...++++.+-++...|.-...+...+..++|.+--|.
T Consensus 18 ~~ay~~i~~Yl~~~~~~~g~~~~~il~~lldlfEeaa 54 (85)
T 2o3l_A 18 QFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGA 54 (85)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence 3456777666666778888888888888888877654
Done!