Query 040668
Match_columns 111
No_of_seqs 181 out of 1127
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040668.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040668hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74f1 f.23.25.1 (F:1-32) Pet 7.3 1.5E+02 0.011 14.1 2.8 12 76-87 9-20 (32)
2 d2tpta1 a.46.2.1 (A:1-70) Thym 6.2 2.1E+02 0.016 15.0 4.0 24 77-100 23-46 (70)
3 d1uoua1 a.46.2.1 (A:33-100) Th 5.8 2.3E+02 0.017 14.8 4.0 23 77-99 23-45 (68)
4 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.9 3.1E+02 0.022 15.3 4.0 24 51-74 36-59 (75)
5 d1c53a_ a.3.1.1 (A:) Cytochrom 4.9 1.7E+02 0.012 15.1 1.7 15 83-97 59-73 (79)
6 d2i00a1 d.106.1.4 (A:301-406) 4.8 1.8E+02 0.013 16.7 1.9 19 78-96 60-78 (106)
7 d2hv2a1 d.106.1.4 (A:287-397) 4.2 2.1E+02 0.015 16.6 1.9 15 81-95 68-82 (111)
8 d2j7ja2 g.37.1.1 (A:29-57) Tra 3.9 41 0.003 16.0 -1.5 11 3-13 16-26 (29)
9 d1b0na1 a.34.1.1 (A:74-108) Si 3.8 1.4E+02 0.01 14.6 0.6 9 11-19 10-18 (35)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 3.8 2.7E+02 0.02 13.2 1.9 15 96-110 6-20 (34)
No 1
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.25 E-value=1.5e+02 Score=14.09 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhc
Q 040668 76 SLQVISVMMVGH 87 (111)
Q Consensus 76 ~l~~vd~i~vG~ 87 (111)
.+-....+|||+
T Consensus 9 a~lsfglifvgw 20 (32)
T d2e74f1 9 ALLSFGLIFVGW 20 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHh
Confidence 333445566666
No 2
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=2.1e+02 Score=15.00 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHHHHHHHhccChHHHHHHHHHH
Q 040668 77 LQVISVMMVGHLGELFLSSTAIAI 100 (111)
Q Consensus 77 l~~vd~i~vG~LG~~~LAavsLa~ 100 (111)
..+++.++-|++++.+++|.-.|.
T Consensus 23 ~~~~~~i~~g~~~d~qi~afL~al 46 (70)
T d2tpta1 23 RFFINGIRDNTISEGQIAALAMTI 46 (70)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHH
Confidence 345667777888877777765443
No 3
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=2.3e+02 Score=14.85 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=14.8
Q ss_pred HHHHHHHHHhccChHHHHHHHHH
Q 040668 77 LQVISVMMVGHLGELFLSSTAIA 99 (111)
Q Consensus 77 l~~vd~i~vG~LG~~~LAavsLa 99 (111)
..+++.++-|++.+.+++|.=.+
T Consensus 23 ~~~~~~i~~g~~s~~qi~afL~a 45 (68)
T d1uoua1 23 RGFVAAVVNGSAQGAQIGAMLMA 45 (68)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 34566677777777777665444
No 4
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.93 E-value=3.1e+02 Score=15.33 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 040668 51 DVYIEEVKRLGSIAGPMVAVNLSQ 74 (111)
Q Consensus 51 ~~~~~E~k~ll~lA~Plils~llq 74 (111)
..+++--.+++.++.|.++.+++.
T Consensus 36 N~~RR~~~~~l~v~PPfi~~Y~iy 59 (75)
T d1ppjg_ 36 NVLRRTRACILRVAPPFVAFYLVY 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhceEEcCHHHHHHHHH
Confidence 345566678899999999988765
No 5
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=4.89 E-value=1.7e+02 Score=15.14 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=12.1
Q ss_pred HHHhccChHHHHHHH
Q 040668 83 MMVGHLGELFLSSTA 97 (111)
Q Consensus 83 i~vG~LG~~~LAavs 97 (111)
-|.++|+++++++++
T Consensus 59 ~~~~~Lsd~ei~~l~ 73 (79)
T d1c53a_ 59 NLVKRYSDEEMKAMA 73 (79)
T ss_pred HHHhcCCHHHHHHHH
Confidence 456789999998876
No 6
>d2i00a1 d.106.1.4 (A:301-406) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.81 E-value=1.8e+02 Score=16.68 Aligned_cols=19 Identities=11% Similarity=0.238 Sum_probs=10.0
Q ss_pred HHHHHHHHhccChHHHHHH
Q 040668 78 QVISVMMVGHLGELFLSST 96 (111)
Q Consensus 78 ~~vd~i~vG~LG~~~LAav 96 (111)
+..+.+++|..+..+|+..
T Consensus 60 ~~Ls~l~~G~~~~~~L~~~ 78 (106)
T d2i00a1 60 QTLTCLVMNYRRPSYLHRI 78 (106)
T ss_dssp HHHHHHHHTSSCHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHc
Confidence 3344555566655555544
No 7
>d2hv2a1 d.106.1.4 (A:287-397) Hypothetical protein EF1021 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.24 E-value=2.1e+02 Score=16.58 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=6.7
Q ss_pred HHHHHhccChHHHHH
Q 040668 81 SVMMVGHLGELFLSS 95 (111)
Q Consensus 81 d~i~vG~LG~~~LAa 95 (111)
+.+++|.....+|+.
T Consensus 68 s~l~~G~~~~~~l~~ 82 (111)
T d2hv2a1 68 TQLFLGYRSAETLSF 82 (111)
T ss_dssp HHHHHTSSCHHHHHH
T ss_pred HHHHhCCCCHHHHHH
Confidence 344444444444443
No 8
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=3.87 E-value=41 Score=16.03 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.7
Q ss_pred CCCCcccChHH
Q 040668 3 SVPASVRDKEE 13 (111)
Q Consensus 3 ~~~~~~~~~~~ 13 (111)
++|.+.++||.
T Consensus 16 s~ps~lkrhek 26 (29)
T d2j7ja2 16 SLPSRLKRHEK 26 (29)
T ss_dssp SSHHHHHHHHH
T ss_pred cCHHHHhhhhh
Confidence 56777777773
No 9
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=3.84 E-value=1.4e+02 Score=14.60 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=4.5
Q ss_pred hHHHhhccc
Q 040668 11 KEEMDKGLL 19 (111)
Q Consensus 11 ~~~~~~~~~ 19 (111)
||+|.+|.|
T Consensus 10 keAM~SGvS 18 (35)
T d1b0na1 10 RDAMTSGVS 18 (35)
T ss_dssp HHHHHSCCC
T ss_pred HHHHHccCC
Confidence 355555543
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.83 E-value=2.7e+02 Score=13.15 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhc
Q 040668 96 TAIAISFSAVTGFSL 110 (111)
Q Consensus 96 vsLa~~~~~vt~~~i 110 (111)
++...|++.+|.|++
T Consensus 6 vavvvmvagits~gl 20 (34)
T d2p7tc1 6 VAVVVMVAGITSFGL 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhh
Done!