BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040671
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZW82|RNY_DEHSC Ribonuclease Y OS=Dehalococcoides sp. (strain CBDB1) GN=rny PE=3
SV=1
Length = 527
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 1 MELLRLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRN-----LKEL 55
M L F Q IA+ + K +S E +LV+ ++ E + +RN LKE
Sbjct: 37 MALFVFRGFIMNRQLRIAQRKATKMLADSKLEAKDVLVEAKR--EADKTRNSAETELKER 94
Query: 56 QSELAST-NELCQK---LERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110
+SELA N + QK L+RK+ L+ L N++K + ET +++ + REN L EE
Sbjct: 95 RSELAKQENRVIQKTEALDRKLENLEQREQSLTNREKSIDETQSQIEEIRENELKRLEE 153
>sp|A5FPE4|RNY_DEHSB Ribonuclease Y OS=Dehalococcoides sp. (strain BAV1) GN=rny PE=3
SV=1
Length = 527
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 1 MELLRLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRN-----LKEL 55
M L F Q IA+ + K +S E +LV+ ++ E + +RN LKE
Sbjct: 37 MALFVFRGFIMNRQLRIAQRKATKMLADSKLEAKDVLVEAKR--EADKTRNSAETELKER 94
Query: 56 QSELAST-NELCQK---LERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110
+SELA N + QK L+RK+ L+ L N++K + ET +++ + REN L EE
Sbjct: 95 RSELAKQENRVIQKTEALDRKLENLEQREQSLTNREKSIDETQSQIEEIRENELKRLEE 153
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 OS=Plasmodium yoelii yoelii GN=MSP-1
PE=3 SV=1
Length = 1772
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Query: 37 LVQKQKRNEEEYSRNLKELQS-ELASTNELCQKLERKVSYLQ----------NDNALLEN 85
+ +K K +EY EL + E +T EL KL ++++YLQ N+ N
Sbjct: 535 IFEKFKTKRDEYMTKKTELNTCEYGNTKELINKLNKQLNYLQDYSLRKDIISNEIEYFSN 594
Query: 86 KQKELKETINRL---LQYRENFLSA 107
K+KEL+ INRL +Q ++N L A
Sbjct: 595 KKKELQYNINRLAEAVQAKQNVLVA 619
>sp|Q8KBS6|SMC_CHLTE Chromosome partition protein Smc OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=smc PE=3 SV=1
Length = 1183
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLS 106
E R L + Q EL ++N+L LE+++ LQ+ + KQK L +TI RL N+ S
Sbjct: 278 ELERKLADAQKELNASNQLVHTLEKQL--LQH-----KEKQKNLLQTIERL-----NY-S 324
Query: 107 AYEESTCDMKRAIETRD--RKLTVLHEKINSHLTLFDSIEKEAFSIKQVVD--------N 156
++ +++ +++ K T L E + L F+ ++K+ + +D
Sbjct: 325 IADKGRKRLEQEALSKELSEKQTPLQEVCTAQLAEFERLKKQEVELNSALDASRQALQSE 384
Query: 157 VECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQ 207
V LQK+L+A ++ Q+L + KE HLE G + + QR +D +M Q
Sbjct: 385 RRAVAELQKSLNALNLTRQSLRTRKE--HLE-GSVNRLDQRKRDLERSMEQ 432
>sp|Q29GR8|MOEH_DROPS Moesin/ezrin/radixin homolog 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Moe PE=3 SV=3
Length = 593
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 13 LQALIAETRHLKEKENSATEEIHLLVQKQKRNE---EEYSRNLKELQSE-------LAST 62
+Q + A+ R K + E++ L + ++R E +EY LK++Q E L
Sbjct: 321 VQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMERSQRDLLEA 380
Query: 63 NELCQKLERKVSYLQNDNALLENKQKELKETINRL 97
E+ ++LE ++ LQ LE +QKEL+ + RL
Sbjct: 381 QEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRL 415
>sp|O08538|ANGP1_MOUSE Angiopoietin-1 OS=Mus musculus GN=Angpt1 PE=2 SV=2
Length = 498
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKE----LQSELAS 61
LS +K + Q L LK E ++ E H +++ + +++EE LKE LQ ++
Sbjct: 168 LSTYKLEKQLLQQTNEILKIHEKNSLLE-HKILEMEGKHKEELD-TLKEEKENLQGLVSR 225
Query: 62 TNELCQKLERKVSYLQNDNALLENKQKELKETINRLL 98
+ Q+LE+++S N+N++L+ +Q EL +T++ L+
Sbjct: 226 QTFIIQELEKQLSRATNNNSILQKQQLELMDTVHNLI 262
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 47 EYSRNLKELQSELASTNELCQKLERKV-----------SYLQNDNALLENKQKELKETIN 95
E ++L+ELQ + EL Q LE KV + L N LENK LKET +
Sbjct: 1221 EIQQSLQELQDSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQLENKTSCLKETQD 1280
Query: 96 RLLQYRE-------------NFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDS 142
+LL+ ++ L +E+ D+K ++ + + VL EK+ + + D+
Sbjct: 1281 QLLESQKKEKQLQEEAAKLSGELQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDA 1340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,180,599
Number of Sequences: 539616
Number of extensions: 4702826
Number of successful extensions: 25194
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 1226
Number of HSP's that attempted gapping in prelim test: 21389
Number of HSP's gapped (non-prelim): 4497
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)