Query 040671
Match_columns 358
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 10:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 97.0 0.098 2.1E-06 51.1 18.6 43 163-205 210-252 (428)
2 TIGR02169 SMC_prok_A chromosom 96.4 0.58 1.2E-05 49.1 20.2 43 55-97 292-334 (1164)
3 TIGR02169 SMC_prok_A chromosom 96.0 1 2.2E-05 47.3 20.2 46 163-208 439-484 (1164)
4 COG1196 Smc Chromosome segrega 95.9 1.3 2.8E-05 49.1 21.0 38 45-82 711-748 (1163)
5 TIGR02168 SMC_prok_B chromosom 95.7 2.4 5.3E-05 44.2 21.1 9 324-332 1145-1153(1179)
6 PRK03918 chromosome segregatio 95.6 2.8 6.1E-05 43.8 21.0 46 49-94 237-282 (880)
7 COG1196 Smc Chromosome segrega 95.4 3.2 7E-05 46.0 21.6 49 174-222 858-906 (1163)
8 TIGR02168 SMC_prok_B chromosom 95.3 3.5 7.6E-05 43.1 20.4 8 183-190 870-877 (1179)
9 PRK02224 chromosome segregatio 95.1 2.9 6.2E-05 44.0 19.5 35 172-206 412-446 (880)
10 PF15619 Lebercilin: Ciliary p 95.0 1 2.2E-05 41.2 13.9 104 13-116 63-170 (194)
11 PRK02224 chromosome segregatio 94.3 7.6 0.00016 40.9 20.2 96 49-152 205-300 (880)
12 TIGR03185 DNA_S_dndD DNA sulfu 94.1 8.6 0.00019 40.0 19.8 20 139-158 367-386 (650)
13 PF11559 ADIP: Afadin- and alp 94.0 3.3 7.2E-05 35.2 14.1 114 11-134 34-150 (151)
14 TIGR00606 rad50 rad50. This fa 93.8 13 0.00028 42.0 21.7 29 174-202 1063-1091(1311)
15 KOG0996 Structural maintenance 93.7 9.1 0.0002 44.1 20.3 210 15-225 803-1044(1293)
16 PF13851 GAS: Growth-arrest sp 93.7 5.5 0.00012 36.4 17.3 134 14-150 30-169 (201)
17 TIGR00606 rad50 rad50. This fa 93.7 7.8 0.00017 43.6 19.9 13 196-208 1078-1090(1311)
18 COG1579 Zn-ribbon protein, pos 93.5 2 4.4E-05 41.0 13.0 131 6-145 54-185 (239)
19 PRK11637 AmiB activator; Provi 93.1 1.5 3.3E-05 43.0 12.1 85 14-98 169-253 (428)
20 PF04108 APG17: Autophagy prot 93.1 2 4.4E-05 42.7 12.9 134 72-211 242-378 (412)
21 PF04156 IncA: IncA protein; 92.9 1.3 2.9E-05 38.3 10.2 29 5-33 82-110 (191)
22 KOG0161 Myosin class II heavy 92.8 8.7 0.00019 46.0 19.3 103 50-153 929-1035(1930)
23 PRK04778 septation ring format 92.8 6.5 0.00014 40.5 16.4 137 55-197 367-508 (569)
24 PF00038 Filament: Intermediat 92.7 8.2 0.00018 35.7 16.4 98 51-155 210-307 (312)
25 KOG0980 Actin-binding protein 92.5 17 0.00037 41.0 19.9 140 9-148 345-504 (980)
26 PF05701 WEMBL: Weak chloropla 92.2 14 0.00029 38.1 17.8 151 34-201 209-366 (522)
27 KOG0161 Myosin class II heavy 91.9 20 0.00044 43.1 20.6 151 5-155 1010-1170(1930)
28 KOG4674 Uncharacterized conser 91.5 25 0.00054 42.2 20.7 192 6-210 656-882 (1822)
29 PF09744 Jnk-SapK_ap_N: JNK_SA 90.9 4.8 0.0001 36.2 11.6 73 38-110 77-149 (158)
30 PHA02562 46 endonuclease subun 90.8 18 0.0004 35.8 17.4 28 301-332 511-538 (562)
31 PF00261 Tropomyosin: Tropomyo 90.7 12 0.00026 34.4 14.3 94 47-158 117-210 (237)
32 PF11932 DUF3450: Protein of u 90.6 7.4 0.00016 35.8 12.8 92 17-108 23-114 (251)
33 PF05911 DUF869: Plant protein 90.2 5.6 0.00012 43.5 13.4 107 8-118 593-713 (769)
34 PF05667 DUF812: Protein of un 90.1 11 0.00024 40.0 15.1 82 163-245 459-541 (594)
35 KOG3584 cAMP response element 90.0 0.61 1.3E-05 46.6 5.6 44 39-92 297-340 (348)
36 PF09766 FimP: Fms-interacting 89.6 2.8 6.1E-05 41.2 9.8 104 5-109 27-153 (355)
37 PF08317 Spc7: Spc7 kinetochor 89.6 3.6 7.7E-05 39.5 10.3 18 9-26 182-199 (325)
38 PF05667 DUF812: Protein of un 89.3 34 0.00073 36.5 19.2 69 165-235 498-575 (594)
39 KOG4674 Uncharacterized conser 88.4 20 0.00043 43.0 16.7 147 9-161 803-956 (1822)
40 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.0 15 0.00033 31.1 14.2 120 5-128 4-123 (132)
41 PF07888 CALCOCO1: Calcium bin 87.3 45 0.00097 35.7 17.6 25 130-154 289-313 (546)
42 PF09177 Syntaxin-6_N: Syntaxi 87.1 9.3 0.0002 30.7 9.7 62 46-115 35-96 (97)
43 PRK09039 hypothetical protein; 86.5 31 0.00068 33.9 14.8 184 44-243 47-250 (343)
44 PF15066 CAGE1: Cancer-associa 86.4 6.6 0.00014 41.5 10.5 115 60-203 313-435 (527)
45 PF07111 HCR: Alpha helical co 86.3 59 0.0013 36.0 19.5 182 13-208 75-285 (739)
46 PF04111 APG6: Autophagy prote 86.1 7.7 0.00017 37.6 10.3 95 6-105 11-105 (314)
47 PF05218 DUF713: Protein of un 85.8 28 0.0006 31.8 15.8 55 19-74 2-60 (182)
48 PF10205 KLRAQ: Predicted coil 85.7 6.5 0.00014 33.7 8.5 74 15-99 2-75 (102)
49 KOG0978 E3 ubiquitin ligase in 85.5 56 0.0012 36.0 17.1 95 29-140 397-499 (698)
50 PF05483 SCP-1: Synaptonemal c 85.1 54 0.0012 36.4 16.8 157 54-240 563-720 (786)
51 PF07888 CALCOCO1: Calcium bin 85.0 59 0.0013 34.8 19.6 143 49-198 303-457 (546)
52 COG2433 Uncharacterized conser 84.8 6.9 0.00015 42.3 10.0 58 52-109 410-467 (652)
53 KOG0971 Microtubule-associated 84.7 62 0.0013 37.3 17.3 72 140-211 370-450 (1243)
54 COG1579 Zn-ribbon protein, pos 84.6 6.7 0.00015 37.6 9.0 22 75-96 107-128 (239)
55 PF04156 IncA: IncA protein; 84.5 26 0.00057 30.4 12.7 52 41-92 135-186 (191)
56 smart00787 Spc7 Spc7 kinetocho 84.3 13 0.00029 36.3 11.0 79 7-85 175-260 (312)
57 PF10168 Nup88: Nuclear pore c 84.1 29 0.00064 37.6 14.4 67 28-94 557-623 (717)
58 PF10481 CENP-F_N: Cenp-F N-te 83.8 19 0.00041 36.0 11.8 52 32-83 42-93 (307)
59 PF12128 DUF3584: Protein of u 83.7 84 0.0018 35.6 18.9 44 173-216 971-1015(1201)
60 PRK09039 hypothetical protein; 83.5 23 0.00049 34.8 12.3 64 46-109 133-196 (343)
61 PF11932 DUF3450: Protein of u 83.5 18 0.0004 33.2 11.1 78 32-109 24-101 (251)
62 KOG0249 LAR-interacting protei 83.3 34 0.00074 38.3 14.5 166 8-199 95-264 (916)
63 PF09730 BicD: Microtubule-ass 83.3 78 0.0017 34.9 20.9 66 172-244 419-484 (717)
64 KOG0933 Structural maintenance 83.1 79 0.0017 36.6 17.5 39 44-82 742-780 (1174)
65 PF10174 Cast: RIM-binding pro 82.4 75 0.0016 35.2 16.7 172 32-211 353-539 (775)
66 PF08317 Spc7: Spc7 kinetochor 82.1 14 0.00031 35.5 10.2 62 28-89 187-248 (325)
67 PRK10884 SH3 domain-containing 81.8 16 0.00035 33.9 10.1 37 44-80 112-148 (206)
68 PF01920 Prefoldin_2: Prefoldi 81.7 5.7 0.00012 30.9 6.1 37 61-97 59-95 (106)
69 PRK10884 SH3 domain-containing 81.6 9.6 0.00021 35.4 8.5 79 9-94 91-169 (206)
70 PRK04863 mukB cell division pr 81.3 1.2E+02 0.0027 35.8 20.2 189 11-204 279-481 (1486)
71 KOG0612 Rho-associated, coiled 80.9 62 0.0013 37.9 15.9 28 174-201 744-771 (1317)
72 PF09787 Golgin_A5: Golgin sub 80.8 52 0.0011 33.8 14.1 143 52-197 276-431 (511)
73 PF00261 Tropomyosin: Tropomyo 80.4 48 0.001 30.5 15.5 134 14-151 18-154 (237)
74 PF15619 Lebercilin: Ciliary p 80.3 48 0.001 30.5 14.5 116 7-131 22-146 (194)
75 KOG1029 Endocytic adaptor prot 80.2 86 0.0019 35.7 16.2 44 173-216 473-516 (1118)
76 KOG0804 Cytoplasmic Zn-finger 79.9 46 0.00099 35.3 13.4 107 37-143 348-454 (493)
77 PF06785 UPF0242: Uncharacteri 79.8 80 0.0017 32.7 14.9 63 145-210 172-236 (401)
78 TIGR02231 conserved hypothetic 79.7 5.8 0.00013 40.0 7.0 74 6-79 73-167 (525)
79 PF06160 EzrA: Septation ring 79.4 84 0.0018 32.8 17.6 89 67-161 375-467 (560)
80 KOG0250 DNA repair protein RAD 79.3 46 0.00099 38.2 14.1 72 33-110 362-433 (1074)
81 KOG1962 B-cell receptor-associ 79.3 19 0.00041 34.3 9.8 100 11-123 114-213 (216)
82 PF05266 DUF724: Protein of un 79.0 19 0.00042 33.0 9.5 119 63-203 65-187 (190)
83 PF06548 Kinesin-related: Kine 78.6 96 0.0021 33.0 15.8 153 30-208 275-439 (488)
84 PF14662 CCDC155: Coiled-coil 76.5 70 0.0015 30.3 14.4 91 32-126 67-160 (193)
85 PRK01156 chromosome segregatio 76.1 1.2E+02 0.0025 32.6 20.3 14 183-196 367-380 (895)
86 KOG0995 Centromere-associated 75.7 65 0.0014 34.9 13.4 108 143-262 306-416 (581)
87 KOG0018 Structural maintenance 75.6 51 0.0011 38.1 13.2 157 9-185 730-897 (1141)
88 PRK13729 conjugal transfer pil 75.4 6.2 0.00013 41.3 5.9 49 40-88 73-121 (475)
89 PF04859 DUF641: Plant protein 75.4 11 0.00023 33.4 6.5 73 14-86 48-130 (131)
90 PRK03918 chromosome segregatio 74.3 1.2E+02 0.0026 32.0 19.6 10 191-200 357-366 (880)
91 KOG3584 cAMP response element 73.5 5.6 0.00012 40.0 4.9 48 49-97 291-338 (348)
92 KOG1029 Endocytic adaptor prot 73.1 1.3E+02 0.0029 34.4 15.3 34 155-188 525-558 (1118)
93 PF06156 DUF972: Protein of un 71.9 6.7 0.00015 33.2 4.4 78 5-112 9-86 (107)
94 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.9 19 0.00041 30.5 7.1 50 5-54 60-109 (132)
95 PF15066 CAGE1: Cancer-associa 71.6 27 0.00059 37.1 9.4 34 172-205 369-402 (527)
96 KOG0995 Centromere-associated 71.5 1.6E+02 0.0034 32.1 15.0 105 7-123 224-328 (581)
97 PF00170 bZIP_1: bZIP transcri 71.4 14 0.00029 27.6 5.4 34 65-98 27-60 (64)
98 PF08826 DMPK_coil: DMPK coile 71.4 26 0.00056 27.5 7.1 53 48-101 9-61 (61)
99 COG4942 Membrane-bound metallo 71.3 1.4E+02 0.003 31.3 17.0 79 37-115 46-127 (420)
100 PF09726 Macoilin: Transmembra 70.6 1.2E+02 0.0025 33.2 14.1 28 46-73 548-575 (697)
101 PF10186 Atg14: UV radiation r 70.3 83 0.0018 28.3 14.3 46 49-94 55-100 (302)
102 PF09728 Taxilin: Myosin-like 70.1 1.1E+02 0.0025 29.8 18.4 120 9-142 27-153 (309)
103 KOG0996 Structural maintenance 69.5 1.5E+02 0.0031 35.0 15.0 185 8-206 437-640 (1293)
104 PF00015 MCPsignal: Methyl-acc 68.5 72 0.0016 27.0 13.8 108 4-111 68-182 (213)
105 TIGR01554 major_cap_HK97 phage 68.3 16 0.00035 35.2 6.6 19 21-39 2-20 (378)
106 KOG0244 Kinesin-like protein [ 68.0 81 0.0018 35.8 12.5 148 32-193 474-639 (913)
107 PF05529 Bap31: B-cell recepto 67.8 27 0.00059 30.8 7.5 25 11-35 118-142 (192)
108 PF10226 DUF2216: Uncharacteri 67.7 34 0.00074 32.4 8.4 71 11-99 48-129 (195)
109 PF10186 Atg14: UV radiation r 67.7 94 0.002 28.0 13.9 57 7-63 23-83 (302)
110 COG0419 SbcC ATPase involved i 67.6 1.9E+02 0.0042 31.6 20.4 43 161-203 371-413 (908)
111 PF05557 MAD: Mitotic checkpoi 67.0 1.8 4E-05 45.4 0.0 112 82-197 261-396 (722)
112 COG4717 Uncharacterized conser 66.8 55 0.0012 37.2 10.9 123 11-147 219-346 (984)
113 cd00632 Prefoldin_beta Prefold 66.4 70 0.0015 26.0 9.3 37 61-97 60-96 (105)
114 KOG0999 Microtubule-associated 66.4 2.2E+02 0.0047 31.6 16.0 62 36-97 93-161 (772)
115 KOG0977 Nuclear envelope prote 66.2 60 0.0013 34.8 10.7 72 32-103 245-342 (546)
116 PF06008 Laminin_I: Laminin Do 65.5 1.2E+02 0.0025 28.2 17.1 108 10-123 51-163 (264)
117 PF05781 MRVI1: MRVI1 protein; 64.8 58 0.0013 34.9 10.3 126 55-196 198-323 (538)
118 PF06005 DUF904: Protein of un 64.0 44 0.00096 26.6 7.2 51 54-104 8-58 (72)
119 TIGR02338 gimC_beta prefoldin, 63.8 82 0.0018 25.9 9.5 37 61-97 64-100 (110)
120 PRK00888 ftsB cell division pr 63.8 17 0.00038 30.3 5.2 40 47-86 31-70 (105)
121 PF10805 DUF2730: Protein of u 63.6 20 0.00043 29.8 5.4 47 51-97 36-84 (106)
122 PF04111 APG6: Autophagy prote 63.5 64 0.0014 31.5 9.7 78 32-109 46-123 (314)
123 PF14197 Cep57_CLD_2: Centroso 63.3 17 0.00037 28.7 4.8 44 67-110 1-44 (69)
124 TIGR01843 type_I_hlyD type I s 63.2 1.4E+02 0.0029 28.2 18.4 19 7-25 77-95 (423)
125 COG4026 Uncharacterized protei 63.2 36 0.00079 33.6 7.9 55 31-92 137-191 (290)
126 PF12958 DUF3847: Protein of u 63.0 10 0.00022 31.5 3.6 35 51-85 2-36 (86)
127 KOG0946 ER-Golgi vesicle-tethe 62.9 2.5E+02 0.0053 32.3 14.8 73 32-104 653-732 (970)
128 PF07889 DUF1664: Protein of u 62.3 53 0.0011 28.9 8.0 77 11-87 50-126 (126)
129 PF12128 DUF3584: Protein of u 61.7 2.9E+02 0.0063 31.5 21.2 89 24-112 287-379 (1201)
130 PRK04863 mukB cell division pr 61.0 3.5E+02 0.0076 32.3 21.4 71 123-193 455-527 (1486)
131 COG0419 SbcC ATPase involved i 60.7 2.6E+02 0.0056 30.6 20.6 35 174-208 721-755 (908)
132 PF06785 UPF0242: Uncharacteri 60.1 30 0.00065 35.6 7.0 98 6-103 122-226 (401)
133 PF04977 DivIC: Septum formati 59.4 22 0.00048 26.3 4.6 39 48-86 22-60 (80)
134 PF12718 Tropomyosin_1: Tropom 59.4 1.2E+02 0.0027 26.5 10.2 31 54-84 18-48 (143)
135 PF09789 DUF2353: Uncharacteri 59.3 2E+02 0.0044 28.9 13.2 88 14-106 68-161 (319)
136 PLN03188 kinesin-12 family pro 58.7 3.8E+02 0.0083 32.0 16.6 170 15-209 990-1210(1320)
137 PF09730 BicD: Microtubule-ass 58.7 2.9E+02 0.0064 30.6 19.9 162 37-216 21-194 (717)
138 PF09726 Macoilin: Transmembra 58.2 2.9E+02 0.0062 30.3 18.3 37 174-210 589-629 (697)
139 KOG0250 DNA repair protein RAD 57.1 3.8E+02 0.0081 31.4 20.0 149 59-221 276-436 (1074)
140 PRK09343 prefoldin subunit bet 57.0 1.2E+02 0.0026 25.7 11.7 83 8-98 4-105 (121)
141 PF10174 Cast: RIM-binding pro 56.6 3.2E+02 0.007 30.5 18.9 48 162-209 326-373 (775)
142 PF05384 DegS: Sensor protein 55.8 1.6E+02 0.0035 26.7 11.2 83 6-95 36-122 (159)
143 PF02403 Seryl_tRNA_N: Seryl-t 55.7 50 0.0011 26.5 6.4 32 67-98 70-101 (108)
144 KOG1853 LIS1-interacting prote 55.4 1.9E+02 0.004 29.3 11.3 16 9-24 25-40 (333)
145 PF08614 ATG16: Autophagy prot 55.3 1.3E+02 0.0028 27.0 9.5 17 8-24 92-108 (194)
146 PF14182 YgaB: YgaB-like prote 54.9 15 0.00032 30.5 3.3 36 180-215 41-76 (79)
147 cd00890 Prefoldin Prefoldin is 54.8 22 0.00048 28.6 4.2 39 61-99 84-122 (129)
148 PF09403 FadA: Adhesion protei 54.7 1.5E+02 0.0033 26.1 11.3 60 50-109 59-120 (126)
149 PRK10361 DNA recombination pro 54.7 2.9E+02 0.0062 29.3 18.0 28 83-110 90-117 (475)
150 PF15070 GOLGA2L5: Putative go 53.8 3.2E+02 0.007 29.6 18.1 15 174-188 246-260 (617)
151 PF07106 TBPIP: Tat binding pr 53.7 35 0.00075 29.7 5.5 36 64-99 72-107 (169)
152 KOG0243 Kinesin-like protein [ 53.6 4E+02 0.0086 31.1 14.7 123 13-142 406-533 (1041)
153 PF11594 Med28: Mediator compl 53.4 59 0.0013 28.3 6.7 49 37-88 32-80 (106)
154 PF05911 DUF869: Plant protein 53.4 3.7E+02 0.0079 30.1 14.4 23 174-196 260-282 (769)
155 PF04912 Dynamitin: Dynamitin 53.1 2.4E+02 0.0052 27.9 12.3 140 42-202 208-366 (388)
156 COG2433 Uncharacterized conser 52.3 1.2E+02 0.0026 33.4 10.2 91 49-139 414-510 (652)
157 COG1340 Uncharacterized archae 51.8 2.1E+02 0.0045 28.7 11.0 88 9-96 156-253 (294)
158 PRK09343 prefoldin subunit bet 51.7 1E+02 0.0022 26.2 7.9 47 51-100 68-114 (121)
159 PF00769 ERM: Ezrin/radixin/mo 51.5 2.2E+02 0.0047 26.9 11.2 78 35-116 36-116 (246)
160 COG1340 Uncharacterized archae 51.3 2.7E+02 0.0058 27.9 19.4 73 32-104 30-102 (294)
161 PF04012 PspA_IM30: PspA/IM30 51.3 1.6E+02 0.0036 26.2 9.5 43 53-95 94-136 (221)
162 PF05701 WEMBL: Weak chloropla 51.0 3.1E+02 0.0067 28.5 20.0 60 10-69 122-191 (522)
163 PF05008 V-SNARE: Vesicle tran 50.7 1.1E+02 0.0023 23.2 8.0 65 33-97 7-73 (79)
164 cd07657 F-BAR_Fes_Fer The F-BA 50.6 2.2E+02 0.0048 26.8 12.7 95 12-109 95-189 (237)
165 cd00584 Prefoldin_alpha Prefol 50.5 1.4E+02 0.0031 24.6 10.1 39 61-99 84-122 (129)
166 KOG2896 UV radiation resistanc 50.3 2.4E+02 0.0051 29.3 11.4 62 45-106 119-180 (377)
167 PRK10698 phage shock protein P 50.3 2.2E+02 0.0047 26.6 10.8 47 48-94 97-143 (222)
168 PF13094 CENP-Q: CENP-Q, a CEN 50.1 71 0.0015 27.6 6.8 49 51-99 28-76 (160)
169 PF06005 DUF904: Protein of un 50.0 1.3E+02 0.0029 24.0 8.2 48 46-100 21-68 (72)
170 smart00338 BRLZ basic region l 49.8 36 0.00079 25.4 4.4 33 65-97 27-59 (65)
171 PRK04778 septation ring format 49.5 3.3E+02 0.0071 28.4 15.7 40 119-158 357-396 (569)
172 smart00806 AIP3 Actin interact 49.1 1.9E+02 0.0042 30.3 10.7 138 47-225 152-294 (426)
173 KOG3202 SNARE protein TLG1/Syn 49.1 2.2E+02 0.0047 27.5 10.4 84 30-121 18-102 (235)
174 TIGR00293 prefoldin, archaeal 48.7 44 0.00096 27.4 5.2 42 162-206 79-120 (126)
175 PF04740 LXG: LXG domain of WX 48.7 1.5E+02 0.0033 25.8 8.7 123 34-158 63-190 (204)
176 TIGR01005 eps_transp_fam exopo 48.2 2.3E+02 0.005 30.0 11.4 13 98-110 389-401 (754)
177 PF10168 Nup88: Nuclear pore c 48.2 2.9E+02 0.0062 30.3 12.3 13 174-186 701-713 (717)
178 smart00787 Spc7 Spc7 kinetocho 48.0 1.9E+02 0.0041 28.5 10.1 17 145-161 271-287 (312)
179 PF10146 zf-C4H2: Zinc finger- 47.1 2.6E+02 0.0057 26.6 11.2 49 46-94 35-83 (230)
180 TIGR00634 recN DNA repair prot 46.8 3.5E+02 0.0076 28.0 16.6 29 170-198 344-372 (563)
181 TIGR03319 YmdA_YtgF conserved 46.2 2.2E+02 0.0048 29.8 10.8 28 69-96 85-112 (514)
182 TIGR03319 YmdA_YtgF conserved 46.1 2.7E+02 0.0059 29.2 11.4 9 172-180 262-270 (514)
183 PRK15422 septal ring assembly 46.0 1.1E+02 0.0024 25.5 6.9 71 62-143 2-79 (79)
184 PF15070 GOLGA2L5: Putative go 45.7 4.3E+02 0.0093 28.7 14.3 35 8-42 26-63 (617)
185 PF02994 Transposase_22: L1 tr 45.7 41 0.00089 33.4 5.3 9 265-273 345-353 (370)
186 TIGR03007 pepcterm_ChnLen poly 45.6 2.4E+02 0.0053 28.0 10.6 34 64-97 310-343 (498)
187 TIGR02231 conserved hypothetic 45.6 97 0.0021 31.5 8.0 37 51-87 72-108 (525)
188 PF09789 DUF2353: Uncharacteri 45.3 3.4E+02 0.0073 27.4 11.7 75 125-208 101-176 (319)
189 smart00502 BBC B-Box C-termina 45.3 1.4E+02 0.0031 23.1 11.9 11 12-22 4-14 (127)
190 COG3879 Uncharacterized protei 45.0 58 0.0013 31.8 6.0 61 36-101 37-97 (247)
191 PF12001 DUF3496: Domain of un 45.0 71 0.0015 27.8 6.0 63 68-134 4-67 (111)
192 PF04912 Dynamitin: Dynamitin 44.7 3.2E+02 0.007 27.0 11.9 89 5-93 262-365 (388)
193 TIGR02894 DNA_bind_RsfA transc 44.3 2.4E+02 0.0053 26.1 9.6 30 86-115 119-148 (161)
194 PLN02678 seryl-tRNA synthetase 43.9 91 0.002 32.2 7.6 34 67-100 74-107 (448)
195 PF08182 Pedibin: Pedibin/Hym- 43.5 33 0.00072 24.9 3.1 31 48-78 2-32 (35)
196 PF14817 HAUS5: HAUS augmin-li 43.0 2.3E+02 0.005 30.8 10.6 23 134-156 450-472 (632)
197 PF13094 CENP-Q: CENP-Q, a CEN 42.8 24 0.00051 30.5 2.8 40 48-87 46-85 (160)
198 PF07439 DUF1515: Protein of u 42.6 1.3E+02 0.0029 26.5 7.3 47 9-62 6-52 (112)
199 KOG0239 Kinesin (KAR3 subfamil 42.4 1.1E+02 0.0024 33.2 8.2 122 32-161 248-385 (670)
200 KOG0963 Transcription factor/C 42.4 5.1E+02 0.011 28.7 17.2 49 38-86 177-225 (629)
201 PF10224 DUF2205: Predicted co 42.3 1.3E+02 0.0028 24.7 6.8 49 52-100 18-66 (80)
202 PF05064 Nsp1_C: Nsp1-like C-t 41.9 32 0.0007 29.0 3.4 69 33-101 19-87 (116)
203 PF04420 CHD5: CHD5-like prote 41.3 71 0.0015 28.2 5.6 59 40-98 37-100 (161)
204 PF08232 Striatin: Striatin fa 41.2 49 0.0011 28.7 4.5 52 40-91 22-73 (134)
205 PRK12705 hypothetical protein; 40.8 2.6E+02 0.0057 29.6 10.4 29 154-182 234-266 (508)
206 TIGR00634 recN DNA repair prot 40.8 2.8E+02 0.0061 28.7 10.5 14 11-24 280-293 (563)
207 COG1382 GimC Prefoldin, chaper 40.6 2.2E+02 0.0048 25.1 8.4 36 61-96 67-102 (119)
208 cd00632 Prefoldin_beta Prefold 40.5 2E+02 0.0043 23.4 8.4 32 66-97 72-103 (105)
209 PF07544 Med9: RNA polymerase 39.8 78 0.0017 25.3 5.2 60 13-73 23-82 (83)
210 PF10224 DUF2205: Predicted co 39.5 1.2E+02 0.0026 24.9 6.2 55 44-99 17-71 (80)
211 COG4026 Uncharacterized protei 39.4 1.4E+02 0.003 29.7 7.7 60 40-99 132-191 (290)
212 PRK12704 phosphodiesterase; Pr 39.4 4E+02 0.0088 28.0 11.5 26 69-94 91-116 (520)
213 COG1842 PspA Phage shock prote 39.2 3.4E+02 0.0074 25.7 10.5 13 130-142 149-161 (225)
214 PF10482 CtIP_N: Tumour-suppre 39.1 98 0.0021 27.6 6.0 57 41-97 5-61 (120)
215 KOG3501 Molecular chaperone Pr 39.1 57 0.0012 28.8 4.5 42 54-102 71-112 (114)
216 TIGR03017 EpsF chain length de 39.0 3.8E+02 0.0082 26.1 11.5 19 115-133 347-365 (444)
217 TIGR02977 phageshock_pspA phag 39.0 3.1E+02 0.0067 25.1 9.6 45 50-94 99-143 (219)
218 KOG1265 Phospholipase C [Lipid 38.9 4.9E+02 0.011 30.5 12.5 145 24-189 1030-1174(1189)
219 PF11559 ADIP: Afadin- and alp 38.6 2.5E+02 0.0054 23.9 12.4 89 34-126 43-131 (151)
220 PF15254 CCDC14: Coiled-coil d 38.5 5.3E+02 0.011 29.5 12.5 90 11-101 356-456 (861)
221 KOG3501 Molecular chaperone Pr 37.9 47 0.001 29.3 3.9 21 68-88 71-91 (114)
222 PF10211 Ax_dynein_light: Axon 37.7 3.2E+02 0.0069 24.9 11.5 50 52-101 122-171 (189)
223 COG3883 Uncharacterized protei 37.7 4.2E+02 0.009 26.2 14.3 18 146-163 135-152 (265)
224 TIGR02680 conserved hypothetic 37.7 6.4E+02 0.014 29.5 13.6 10 234-243 1209-1218(1353)
225 PF15397 DUF4618: Domain of un 37.4 4.1E+02 0.0089 26.1 16.8 87 20-117 26-119 (258)
226 PF06034 DUF919: Nucleopolyhed 37.0 88 0.0019 24.8 4.9 54 53-107 4-57 (62)
227 PF09763 Sec3_C: Exocyst compl 36.9 2.3E+02 0.0051 30.0 9.4 82 19-100 13-97 (701)
228 cd07671 F-BAR_PSTPIP1 The F-BA 36.7 3.7E+02 0.008 25.4 17.4 119 29-148 19-137 (242)
229 PF02996 Prefoldin: Prefoldin 36.4 45 0.00098 26.7 3.4 39 61-99 74-112 (120)
230 PF10376 Mei5: Double-strand r 36.3 1.5E+02 0.0032 28.1 7.2 51 8-61 142-196 (221)
231 PRK11415 hypothetical protein; 36.2 1.8E+02 0.0038 23.1 6.6 64 33-100 4-68 (74)
232 PF10498 IFT57: Intra-flagella 35.9 4.2E+02 0.0092 26.7 10.6 42 143-191 313-354 (359)
233 TIGR00293 prefoldin, archaeal 35.9 67 0.0014 26.4 4.3 39 60-98 82-120 (126)
234 PRK11091 aerobic respiration c 35.5 2.9E+02 0.0063 28.7 9.7 17 200-216 285-301 (779)
235 KOG0992 Uncharacterized conser 35.4 1.5E+02 0.0032 32.3 7.7 93 6-111 227-330 (613)
236 TIGR03752 conj_TIGR03752 integ 35.2 2.8E+02 0.0061 29.5 9.5 22 308-329 279-300 (472)
237 PF10234 Cluap1: Clusterin-ass 35.2 3.4E+02 0.0074 26.7 9.6 18 99-116 218-235 (267)
238 TIGR00414 serS seryl-tRNA synt 34.9 1.3E+02 0.0029 30.3 7.0 28 72-99 77-104 (418)
239 PRK10361 DNA recombination pro 34.9 5.8E+02 0.013 27.1 16.1 33 65-97 86-118 (475)
240 KOG2391 Vacuolar sorting prote 34.9 1.5E+02 0.0032 30.7 7.3 67 23-96 219-285 (365)
241 PRK03947 prefoldin subunit alp 34.7 2.8E+02 0.006 23.3 9.7 39 61-99 91-129 (140)
242 PF10205 KLRAQ: Predicted coil 34.5 1.9E+02 0.0042 25.0 6.9 70 6-86 7-76 (102)
243 PF05377 FlaC_arch: Flagella a 34.5 65 0.0014 25.1 3.7 33 67-99 10-42 (55)
244 PF01025 GrpE: GrpE; InterPro 34.5 2.4E+02 0.0052 24.0 7.6 39 71-109 11-49 (165)
245 PF14989 CCDC32: Coiled-coil d 34.4 38 0.00082 30.7 2.9 43 58-100 50-98 (148)
246 PF13870 DUF4201: Domain of un 34.4 2.9E+02 0.0063 24.2 8.3 59 37-95 78-136 (177)
247 KOG1003 Actin filament-coating 34.3 3.7E+02 0.008 26.0 9.4 64 29-92 123-186 (205)
248 TIGR01005 eps_transp_fam exopo 34.3 5.9E+02 0.013 27.0 13.3 24 74-97 341-364 (754)
249 PF06008 Laminin_I: Laminin Do 34.1 3.9E+02 0.0084 24.8 12.7 110 7-116 126-251 (264)
250 PRK00106 hypothetical protein; 34.0 5.4E+02 0.012 27.6 11.5 26 69-94 106-131 (535)
251 KOG0957 PHD finger protein [Ge 33.9 1.8E+02 0.004 31.8 8.1 71 18-89 317-408 (707)
252 PF15254 CCDC14: Coiled-coil d 33.4 7.9E+02 0.017 28.2 14.4 85 11-109 387-479 (861)
253 PRK11091 aerobic respiration c 33.0 4.8E+02 0.01 27.2 10.8 18 46-63 106-123 (779)
254 KOG4603 TBP-1 interacting prot 32.7 1.4E+02 0.0031 28.5 6.4 57 172-230 116-172 (201)
255 PF08700 Vps51: Vps51/Vps67; 32.2 2.3E+02 0.0049 21.6 8.0 27 71-97 58-84 (87)
256 PF05064 Nsp1_C: Nsp1-like C-t 32.2 19 0.00041 30.3 0.6 54 37-90 44-97 (116)
257 PRK10929 putative mechanosensi 32.1 8.8E+02 0.019 28.4 19.0 37 170-206 388-424 (1109)
258 PF15463 ECM11: Extracellular 32.0 1.9E+02 0.0041 25.0 6.6 37 32-68 83-119 (139)
259 PF08172 CASP_C: CASP C termin 31.7 75 0.0016 30.4 4.5 43 46-88 89-131 (248)
260 PRK12704 phosphodiesterase; Pr 31.5 5.6E+02 0.012 27.0 11.0 6 327-332 404-409 (520)
261 PF10211 Ax_dynein_light: Axon 31.5 4E+02 0.0088 24.3 9.8 53 66-118 122-178 (189)
262 TIGR01554 major_cap_HK97 phage 31.4 1.4E+02 0.0031 28.8 6.4 20 6-25 1-20 (378)
263 KOG0243 Kinesin-like protein [ 31.4 9.1E+02 0.02 28.3 17.7 79 8-86 487-568 (1041)
264 PRK02793 phi X174 lysis protei 31.4 1.9E+02 0.0041 22.9 6.0 49 49-97 7-55 (72)
265 TIGR03185 DNA_S_dndD DNA sulfu 31.3 6.5E+02 0.014 26.6 20.5 37 172-208 421-457 (650)
266 PTZ00464 SNF-7-like protein; P 31.2 4.5E+02 0.0098 24.7 14.5 48 69-116 66-115 (211)
267 PF13514 AAA_27: AAA domain 31.2 8.1E+02 0.018 27.7 17.5 181 5-208 182-382 (1111)
268 PF10212 TTKRSYEDQ: Predicted 31.1 4.8E+02 0.01 28.2 10.5 58 8-69 417-474 (518)
269 KOG0962 DNA repair protein RAD 31.0 1E+03 0.022 28.7 18.3 173 13-200 821-1001(1294)
270 PRK10803 tol-pal system protei 30.9 2E+02 0.0043 27.3 7.1 50 50-99 54-103 (263)
271 KOG4677 Golgi integral membran 30.9 7.3E+02 0.016 27.0 11.9 102 7-112 182-295 (554)
272 PLN02320 seryl-tRNA synthetase 30.7 1.7E+02 0.0038 30.9 7.3 32 69-100 135-166 (502)
273 PRK00888 ftsB cell division pr 30.6 1E+02 0.0023 25.7 4.7 27 69-95 32-58 (105)
274 cd07627 BAR_Vps5p The Bin/Amph 30.5 4.2E+02 0.009 24.1 12.5 66 146-211 99-175 (216)
275 PRK00106 hypothetical protein; 30.4 6.9E+02 0.015 26.8 11.5 9 173-181 284-292 (535)
276 PF10146 zf-C4H2: Zinc finger- 30.1 4.9E+02 0.011 24.8 11.1 26 85-110 32-57 (230)
277 PF15369 KIAA1328: Uncharacter 30.0 2.1E+02 0.0045 29.2 7.4 59 10-102 7-65 (328)
278 PF12325 TMF_TATA_bd: TATA ele 29.9 3.7E+02 0.0081 23.3 11.0 16 9-24 21-36 (120)
279 PF04102 SlyX: SlyX; InterPro 29.7 1.1E+02 0.0024 23.7 4.4 47 51-97 5-51 (69)
280 PRK03947 prefoldin subunit alp 29.0 3.5E+02 0.0076 22.7 7.7 36 171-206 93-128 (140)
281 PF00038 Filament: Intermediat 28.8 4.8E+02 0.01 24.3 21.3 42 48-89 101-142 (312)
282 TIGR02680 conserved hypothetic 28.6 1E+03 0.022 28.0 15.2 44 54-97 280-323 (1353)
283 TIGR02338 gimC_beta prefoldin, 28.2 3.4E+02 0.0074 22.3 10.1 14 132-145 45-58 (110)
284 PF12718 Tropomyosin_1: Tropom 28.2 4.1E+02 0.0089 23.3 12.1 84 12-95 15-104 (143)
285 PRK11519 tyrosine kinase; Prov 27.9 2.4E+02 0.0053 30.1 7.9 23 80-102 372-394 (719)
286 PF01920 Prefoldin_2: Prefoldi 27.9 47 0.001 25.8 2.1 34 66-99 71-104 (106)
287 PRK05892 nucleoside diphosphat 27.8 1.3E+02 0.0029 26.7 5.1 24 56-79 46-69 (158)
288 PRK01156 chromosome segregatio 27.7 8.1E+02 0.018 26.5 20.2 30 6-35 471-500 (895)
289 TIGR01845 outer_NodT efflux tr 27.6 5.4E+02 0.012 24.5 11.0 91 40-144 355-452 (454)
290 TIGR02209 ftsL_broad cell divi 27.6 78 0.0017 24.2 3.2 25 66-90 33-57 (85)
291 PF13166 AAA_13: AAA domain 27.3 7.2E+02 0.016 25.8 18.3 37 176-212 435-471 (712)
292 KOG0612 Rho-associated, coiled 27.2 1.2E+03 0.025 28.2 18.3 71 33-103 469-540 (1317)
293 TIGR01069 mutS2 MutS2 family p 27.1 6.9E+02 0.015 27.6 11.2 47 33-79 512-558 (771)
294 PF12126 DUF3583: Protein of u 26.9 2.1E+02 0.0046 29.2 6.8 83 115-201 4-90 (324)
295 PF06548 Kinesin-related: Kine 26.8 7.7E+02 0.017 26.6 11.0 85 7-92 384-469 (488)
296 PF07798 DUF1640: Protein of u 26.7 4.5E+02 0.0098 23.3 10.7 16 62-77 118-133 (177)
297 PRK12705 hypothetical protein; 26.5 8E+02 0.017 26.1 11.2 17 76-92 93-109 (508)
298 PF03681 UPF0150: Uncharacteri 26.5 10 0.00022 26.6 -1.6 35 322-357 10-45 (48)
299 KOG2077 JNK/SAPK-associated pr 26.4 1.8E+02 0.0038 32.4 6.6 69 49-121 335-424 (832)
300 PF09457 RBD-FIP: FIP domain ; 26.4 1.1E+02 0.0024 23.1 3.7 31 69-99 5-35 (48)
301 PRK13729 conjugal transfer pil 26.2 1.7E+02 0.0036 31.1 6.2 53 42-94 68-120 (475)
302 PF03962 Mnd1: Mnd1 family; I 26.2 5.1E+02 0.011 23.7 10.2 20 119-138 137-156 (188)
303 COG1322 Predicted nuclease of 26.2 7.8E+02 0.017 25.9 16.7 73 83-158 118-191 (448)
304 PF14817 HAUS5: HAUS augmin-li 26.1 5.5E+02 0.012 28.1 10.1 88 48-143 77-164 (632)
305 PF03357 Snf7: Snf7; InterPro 26.0 3.9E+02 0.0084 22.2 8.5 19 188-206 103-121 (171)
306 PF03961 DUF342: Protein of un 25.8 2.5E+02 0.0054 28.2 7.2 10 13-22 336-345 (451)
307 PRK06975 bifunctional uroporph 25.7 3.3E+02 0.0072 29.2 8.4 47 59-105 373-419 (656)
308 PF03962 Mnd1: Mnd1 family; I 25.6 5.2E+02 0.011 23.6 9.4 21 66-86 105-125 (188)
309 PRK11546 zraP zinc resistance 25.5 3.7E+02 0.008 24.3 7.5 25 46-70 57-81 (143)
310 COG3074 Uncharacterized protei 25.4 4.1E+02 0.0088 22.3 8.3 45 48-99 30-74 (79)
311 KOG0964 Structural maintenance 25.2 7.3E+02 0.016 29.4 11.2 98 6-103 344-471 (1200)
312 PF09744 Jnk-SapK_ap_N: JNK_SA 25.2 5.2E+02 0.011 23.4 12.5 35 63-97 88-122 (158)
313 PF13747 DUF4164: Domain of un 25.0 2.3E+02 0.0051 23.2 5.7 36 63-98 52-87 (89)
314 PF04977 DivIC: Septum formati 25.0 1.2E+02 0.0026 22.5 3.7 29 69-97 22-50 (80)
315 TIGR01069 mutS2 MutS2 family p 24.8 9.7E+02 0.021 26.5 11.8 17 308-324 718-734 (771)
316 PF00170 bZIP_1: bZIP transcri 24.8 2.7E+02 0.0058 20.7 5.6 21 72-92 27-47 (64)
317 PF03357 Snf7: Snf7; InterPro 24.7 4.1E+02 0.0089 22.1 8.1 6 106-111 85-90 (171)
318 PRK05431 seryl-tRNA synthetase 24.5 2.6E+02 0.0056 28.4 7.0 31 69-99 71-101 (425)
319 PF13600 DUF4140: N-terminal d 24.4 1.2E+02 0.0025 24.3 3.8 27 50-76 77-103 (104)
320 PRK00295 hypothetical protein; 24.4 2.4E+02 0.0051 22.1 5.4 46 52-97 7-52 (68)
321 COG3883 Uncharacterized protei 24.3 3E+02 0.0065 27.2 7.2 9 282-290 253-261 (265)
322 PF05377 FlaC_arch: Flagella a 24.3 2.4E+02 0.0052 22.1 5.3 43 67-109 3-45 (55)
323 PF12777 MT: Microtubule-bindi 24.2 1.4E+02 0.0031 29.0 5.1 17 132-148 278-294 (344)
324 PRK14011 prefoldin subunit alp 23.8 1.3E+02 0.0028 26.7 4.3 38 61-98 85-122 (144)
325 PRK13723 conjugal transfer pil 23.8 2.6E+02 0.0055 29.4 7.0 45 35-79 390-434 (451)
326 COG3879 Uncharacterized protei 23.6 1.8E+02 0.0039 28.5 5.5 41 77-121 56-96 (247)
327 PF06632 XRCC4: DNA double-str 23.5 2.9E+02 0.0063 27.8 7.1 57 63-132 136-192 (342)
328 PF12329 TMF_DNA_bd: TATA elem 23.5 3.7E+02 0.008 21.3 6.4 30 40-69 23-52 (74)
329 PF05010 TACC: Transforming ac 23.4 6.4E+02 0.014 23.9 14.8 58 45-105 25-82 (207)
330 PF04325 DUF465: Protein of un 23.4 2.7E+02 0.0059 20.1 5.2 46 54-99 3-48 (49)
331 PF05384 DegS: Sensor protein 23.4 5.7E+02 0.012 23.3 13.5 122 46-191 30-152 (159)
332 PF14992 TMCO5: TMCO5 family 23.3 7.6E+02 0.016 24.7 11.4 100 39-143 73-186 (280)
333 PTZ00440 reticulocyte binding 22.9 7.8E+02 0.017 31.7 11.5 145 70-218 2300-2517(2722)
334 PF02388 FemAB: FemAB family; 22.3 2.5E+02 0.0053 28.0 6.3 45 43-91 249-293 (406)
335 PRK11546 zraP zinc resistance 22.3 2.9E+02 0.0063 25.0 6.2 53 9-61 52-107 (143)
336 PRK14160 heat shock protein Gr 22.2 6.2E+02 0.013 24.1 8.6 20 189-208 139-158 (211)
337 KOG0804 Cytoplasmic Zn-finger 22.2 6.9E+02 0.015 27.0 9.7 69 64-134 389-458 (493)
338 PRK14154 heat shock protein Gr 22.0 6.9E+02 0.015 23.8 9.8 23 188-210 133-155 (208)
339 PRK14143 heat shock protein Gr 22.0 6.2E+02 0.014 24.3 8.7 37 73-109 69-105 (238)
340 PF12329 TMF_DNA_bd: TATA elem 21.8 4.1E+02 0.0089 21.0 7.4 49 51-99 13-61 (74)
341 PF10212 TTKRSYEDQ: Predicted 21.4 5.7E+02 0.012 27.6 9.0 54 57-110 434-487 (518)
342 PRK10803 tol-pal system protei 21.4 2.2E+02 0.0048 27.0 5.6 48 7-54 57-104 (263)
343 PF04136 Sec34: Sec34-like fam 21.3 5.8E+02 0.013 22.6 9.3 84 48-153 5-88 (157)
344 PF05600 DUF773: Protein of un 21.2 4.4E+02 0.0096 27.7 8.1 59 36-101 439-497 (507)
345 PF02403 Seryl_tRNA_N: Seryl-t 21.1 4.4E+02 0.0095 21.1 7.9 13 52-64 76-88 (108)
346 PRK06342 transcription elongat 21.1 1.2E+02 0.0026 27.2 3.6 32 46-77 37-77 (160)
347 PF04582 Reo_sigmaC: Reovirus 21.1 1.4E+02 0.003 30.3 4.3 116 56-189 27-143 (326)
348 PRK04406 hypothetical protein; 21.1 4.2E+02 0.0092 21.2 6.3 50 48-97 9-58 (75)
349 KOG3119 Basic region leucine z 20.8 2.7E+02 0.0058 26.7 6.0 35 67-101 218-252 (269)
350 PLN02678 seryl-tRNA synthetase 20.7 4.9E+02 0.011 27.1 8.3 19 82-100 75-93 (448)
351 KOG2216 Conserved coiled/coile 20.7 9.1E+02 0.02 24.6 9.8 43 68-110 162-204 (303)
352 PRK14151 heat shock protein Gr 20.7 6.6E+02 0.014 23.0 9.5 22 188-209 101-122 (176)
353 PF04871 Uso1_p115_C: Uso1 / p 20.6 5.8E+02 0.012 22.3 10.0 50 49-98 40-90 (136)
354 PF05529 Bap31: B-cell recepto 20.5 6E+02 0.013 22.5 7.8 32 67-98 157-188 (192)
355 PF06694 Plant_NMP1: Plant nuc 20.4 4.1E+02 0.0089 27.2 7.4 56 46-110 178-233 (325)
356 PF07851 TMPIT: TMPIT-like pro 20.3 6.3E+02 0.014 25.7 8.7 10 16-25 9-18 (330)
357 PF03954 Lectin_N: Hepatic lec 20.2 1.8E+02 0.0039 26.4 4.4 55 59-116 82-136 (138)
358 TIGR03752 conj_TIGR03752 integ 20.2 3.8E+02 0.0081 28.6 7.4 12 252-263 231-242 (472)
359 PF02050 FliJ: Flagellar FliJ 20.1 3.9E+02 0.0085 20.2 8.9 55 47-101 30-89 (123)
No 1
>PRK11637 AmiB activator; Provisional
Probab=96.97 E-value=0.098 Score=51.13 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=31.9
Q ss_pred hhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhc
Q 040671 163 LQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATM 205 (358)
Q Consensus 163 LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m 205 (358)
|+.....|...+..|-.+++....++..|+.-.++++..+..+
T Consensus 210 L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 210 LEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566788888888888888888888888888777655
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.36 E-value=0.58 Score=49.13 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
++.++....+-.+.+++++.-++.+...++.....++..++.+
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l 334 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.05 E-value=1 Score=47.35 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=24.5
Q ss_pred hhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 163 LQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 163 LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
+++.+......+..+..+.+.+..++..++.-+.+++.-+..+..+
T Consensus 439 l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~ 484 (1164)
T TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555556666656566555555555555555554443
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.90 E-value=1.3 Score=49.06 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHH
Q 040671 45 EEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNAL 82 (358)
Q Consensus 45 EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~ 82 (358)
-.+..++...++.+++.......+|..+++-++++.+.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (1163)
T COG1196 711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEE 748 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.71 E-value=2.4 Score=44.22 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.5
Q ss_pred ceeeccCCC
Q 040671 324 CVVSAHHPD 332 (358)
Q Consensus 324 ~~~~~hh~d 332 (358)
..++.|+++
T Consensus 1145 ~i~~sh~~~ 1153 (1179)
T TIGR02168 1145 FIVITHNKG 1153 (1179)
T ss_pred EEEEEcChh
Confidence 444555544
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=95.58 E-value=2.8 Score=43.77 Aligned_cols=46 Identities=30% Similarity=0.417 Sum_probs=21.8
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
..+..+|+.++....+-.+.|+..|+-++.+...++.+.++|....
T Consensus 237 ~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555555555544444433
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.36 E-value=3.2 Score=46.02 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhh
Q 040671 174 IQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKEN 222 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe~ 222 (358)
++.+..+.+++..++..++-.+.++.+....+..+-...-+.+-.+...
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~ 906 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEE 906 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555666666666666666666655555555555433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.26 E-value=3.5 Score=43.10 Aligned_cols=8 Identities=25% Similarity=0.272 Sum_probs=2.9
Q ss_pred HHHHhhhh
Q 040671 183 ALHLEVGK 190 (358)
Q Consensus 183 Al~~El~~ 190 (358)
.+..++..
T Consensus 870 ~l~~~~~~ 877 (1179)
T TIGR02168 870 ELESELEA 877 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=95.13 E-value=2.9 Score=43.98 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=23.9
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcC
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~ 206 (358)
..+..|..+.+.+..+++.++..+.-++..+..+.
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777776666653
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.96 E-value=1 Score=41.20 Aligned_cols=104 Identities=25% Similarity=0.270 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHH--Hhhh-cH-HHHHHHHhhhhhhccchHHHHHhHH
Q 040671 13 LQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQS--ELAS-TN-ELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 13 LqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqa--Elas-~~-E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
++..-.|||.||++=+...+..+...++.+.++++-.+--.+++. .+.. .+ ..+.+|.+++..++..+..-+++.+
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778999999999999999999999999998887776655555 3322 11 2267778888888888888888888
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhH
Q 040671 89 ELKETINRLLQYRENFLSAYEESTCDMK 116 (358)
Q Consensus 89 eLK~ti~~LLQSRE~Fi~~Ye~stcemk 116 (358)
+|...++-.-.+...=+..+...+.+++
T Consensus 143 ~Lek~leL~~k~~~rql~~e~kK~~~~~ 170 (194)
T PF15619_consen 143 ELEKQLELENKSFRRQLASEKKKHKEAQ 170 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8888877666555444444444444444
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=94.32 E-value=7.6 Score=40.94 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTV 128 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~V 128 (358)
...+..++.+++...+.+.+++.++..++.+.+.++...++++...+ -+...+.....++..|+..-+.+.-
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~--------~l~~l~~~~~~l~~~i~~~e~~~~~ 276 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERRE--------ELETLEAEIEDLRETIAETEREREE 276 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444333332 2333334444445555555455555
Q ss_pred HHHhhhhhhhhhhhhhhhHHHHhh
Q 040671 129 LHEKINSHLTLFDSIEKEAFSIKQ 152 (358)
Q Consensus 129 lsEKLnshl~LFdSIekEa~svKq 152 (358)
+..+|+....--+.++.++..+..
T Consensus 277 l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 277 LAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665555555555544444333
No 12
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.07 E-value=8.6 Score=40.00 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHhhhccccc
Q 040671 139 LFDSIEKEAFSIKQVVDNVE 158 (358)
Q Consensus 139 LFdSIekEa~svKqvld~vq 158 (358)
.++..+.+...+.++++++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ 386 (650)
T TIGR03185 367 PHRLSGSELTQLEVLIQQVK 386 (650)
T ss_pred cccCCHHHHHHHHHHHHHhh
Confidence 55666666555555555444
No 13
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.99 E-value=3.3 Score=35.18 Aligned_cols=114 Identities=20% Similarity=0.334 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
-++-+.|-++=..|.|....++.+..-+.+....-+-....+..|+.+++........++.+..-++..+..++...+..
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888999999999988888888888888888888888888888877888888888888888888888888
Q ss_pred HHHHHHH---HHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 91 KETINRL---LQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 91 K~ti~~L---LQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
|+.++.+ +|++.+ .|.- -|.-+++.+.-|.++|+
T Consensus 114 kee~~klk~~~~~~~t--------q~~~--e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 114 KEELQKLKNQLQQRKT--------QYEH--ELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHH--------HHHH--HHHHHHHHHHHHHHHhc
Confidence 8776654 444422 2222 24466767766666664
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.77 E-value=13 Score=41.97 Aligned_cols=29 Identities=3% Similarity=-0.054 Sum_probs=20.0
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 040671 174 IQNLISEKEALHLEVGKLGIILQRIQDAI 202 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLqrfQd~~ 202 (358)
+..|.+.+..+.++++.|+.=++.++.-.
T Consensus 1063 ~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1063 IDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777776666555
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=9.1 Score=44.11 Aligned_cols=210 Identities=18% Similarity=0.230 Sum_probs=121.7
Q ss_pred HHHHHHHHhhhhhhhhH---HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHH---HHHHHHhhhhhhccchHHH-H---
Q 040671 15 ALIAETRHLKEKENSAT---EEIHLLVQKQKRNEEEYSRNLKELQSELASTNE---LCQKLERKVSYLQNDNALL-E--- 84 (358)
Q Consensus 15 aLisEvR~LRerE~sar---eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E---~~qkLE~kIk~Lenen~~L-E--- 84 (358)
.+=..||.||.++.... +.+..++|++....+..-+.+.++.+.+..... .++-|+..|.-|+.+.+.+ |
T Consensus 803 ~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 803 ELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33366788888887765 567788999999999999999999998655433 3344455577777777666 2
Q ss_pred --HhHHHHHHHHHHH----HHhhHHHH-------HHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHh
Q 040671 85 --NKQKELKETINRL----LQYRENFL-------SAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIK 151 (358)
Q Consensus 85 --kn~keLK~ti~~L----LQSRE~Fi-------~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svK 151 (358)
-.+++|+.+|..+ +|--.+=| .-.+.---.+.-.|+.-++.|.-+-.+|+.|---.+--++|+..+.
T Consensus 883 Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~ 962 (1293)
T KOG0996|consen 883 KKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLT 962 (1293)
T ss_pred HHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565555543 22111111 1111111234455888888899889999998888888888887776
Q ss_pred hhcccccchh-----hhhhhhhhhhHHHHHhhhhHHHH---HHhhhhHHH-HHHHHHHHHHhcChhhhhhhhhhhhhhhh
Q 040671 152 QVVDNVECVP-----YLQKTLSAKDVVIQNLISEKEAL---HLEVGKLGI-ILQRIQDAIATMNQEDNNAFHTALMLKEN 222 (358)
Q Consensus 152 qvld~vq~lv-----~LqKsllvKD~~I~~L~sekqAl---~~El~~lei-iLqrfQd~~s~m~~E~~k~Fssil~~Qe~ 222 (358)
.-+.....-+ .+.++....+++-..+.-.++.| ...+..+.+ .+- |+.-+-.++.+....=+.|-..+..
T Consensus 963 e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~k~ 1041 (1293)
T KOG0996|consen 963 EELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPEKE 1041 (1293)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHHHh
Confidence 6554433332 34456666655544433333332 222333333 222 4444444554444444444444443
Q ss_pred ccc
Q 040671 223 CND 225 (358)
Q Consensus 223 ~Dd 225 (358)
.+.
T Consensus 1042 ~~~ 1044 (1293)
T KOG0996|consen 1042 LKK 1044 (1293)
T ss_pred hCc
Confidence 333
No 16
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.68 E-value=5.5 Score=36.40 Aligned_cols=134 Identities=15% Similarity=0.260 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHH---HHHHHhhHHHHHHhHHHHHHHhhhcHH---HHHHHHhhhhhhccchHHHHHhH
Q 040671 14 QALIAETRHLKEKENSATEEIHLL---VQKQKRNEEEYSRNLKELQSELASTNE---LCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 14 qaLisEvR~LRerE~sareE~~~~---iQk~K~~EEe~~Re~~ELqaElas~~E---~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
.+|=.|+-.+|.++....-++... ..+..+.=+...+++.+|+.++....- .++.+..+++.++-+...|+-..
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888887776544444 444555556667788888888776543 45566778888888888888888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHH
Q 040671 88 KELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSI 150 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~sv 150 (358)
.-|......|-+-|+.+-.-|+.+..+.++....++ .+|..||..=..-.+.-+.++..|
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn---~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKN---LLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888899999999999999999998887776 455555554444444444444333
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.67 E-value=7.8 Score=43.63 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=5.6
Q ss_pred HHHHHHHHhcChh
Q 040671 196 QRIQDAIATMNQE 208 (358)
Q Consensus 196 qrfQd~~s~m~~E 208 (358)
+++++-+..+-.+
T Consensus 1078 k~le~qi~~l~~e 1090 (1311)
T TIGR00606 1078 KGYEKEIKHFKKE 1090 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.46 E-value=2 Score=40.97 Aligned_cols=131 Identities=24% Similarity=0.361 Sum_probs=66.3
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
+-.|+.|.-.+=+|++.+|+|...++.-+ ..+-.. |+...|..|+-...+-...||..+.-|.++..-|++
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~--------~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDE--------RELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777777777776544 333222 333444444444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhh-hhhhhhh
Q 040671 86 KQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLT-LFDSIEK 145 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~-LFdSIek 145 (358)
+...++..|..+=..=..--...+...=......+..-.+...|.+||+.++. .|+-|-+
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 44444444433211111111111122223334444555688899999999864 4555443
No 19
>PRK11637 AmiB activator; Provisional
Probab=93.13 E-value=1.5 Score=42.97 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHH
Q 040671 14 QALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKET 93 (358)
Q Consensus 14 qaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~t 93 (358)
..++.+++..|..=...+.++....+.++....+...+..+|+++.......+.+|+..++..+.+...|++.++.|...
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777778888888888888888888999999999999999999999999999999999888888877
Q ss_pred HHHHH
Q 040671 94 INRLL 98 (358)
Q Consensus 94 i~~LL 98 (358)
|..+-
T Consensus 249 I~~l~ 253 (428)
T PRK11637 249 IARAE 253 (428)
T ss_pred HHHHH
Confidence 76654
No 20
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=93.06 E-value=2 Score=42.66 Aligned_cols=134 Identities=20% Similarity=0.254 Sum_probs=96.3
Q ss_pred hhhhhccchHHHHHhHHHHHHHHHHHHHhhHH---HHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHH
Q 040671 72 KVSYLQNDNALLENKQKELKETINRLLQYREN---FLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAF 148 (358)
Q Consensus 72 kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~---Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~ 148 (358)
=+..|++|...|+.=.++|+..+..+.+.-+. |+..+.+........+..-=..+.-..+++.+|+..|..++.-..
T Consensus 242 ~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~ 321 (412)
T PF04108_consen 242 MLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWE 321 (412)
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998888777766 344444444444444444445566666788899999999887666
Q ss_pred HHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhh
Q 040671 149 SIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNN 211 (358)
Q Consensus 149 svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k 211 (358)
..|- .+..+++..-...+.+-.++.++.. |+.|++-....=+++..++..+.++--+
T Consensus 322 ~~~~-----~i~~~~~~l~~L~~~Y~~F~~aY~~-LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 322 EEKE-----SIQAYIDELEQLCEFYEGFLSAYDS-LLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 3444566666777788888999888 9999988777766666666666555443
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.93 E-value=1.3 Score=38.35 Aligned_cols=29 Identities=34% Similarity=0.412 Sum_probs=16.3
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhHHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSATEE 33 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sareE 33 (358)
.++..+-+++.+-.|+-+++++=.....+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~ 110 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESE 110 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666544443333
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.84 E-value=8.7 Score=45.97 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=57.5
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHH----HHHhhhhhhhHhhhhhcchh
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFL----SAYEESTCDMKRAIETRDRK 125 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi----~~Ye~stcemk~sIe~~dr~ 125 (358)
++.++++.++..-.+.++.+|..+--++.|...++++.++|++.|.. ++.+.+=+ ++.++..=++.-.|+....+
T Consensus 929 ~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~-~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen 929 RKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS-LDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666667777777777777777777766 33332222 23444444455555555555
Q ss_pred hHHHHHhhhhhhhhhhhhhhhHHHHhhh
Q 040671 126 LTVLHEKINSHLTLFDSIEKEAFSIKQV 153 (358)
Q Consensus 126 l~VlsEKLnshl~LFdSIekEa~svKqv 153 (358)
..-+..+.+++...-+..+.....-++.
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444433333
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.77 E-value=6.5 Score=40.52 Aligned_cols=137 Identities=16% Similarity=0.227 Sum_probs=76.9
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh---HHHHHHHhhhhhhhHhhhhhcchhhHHHHH
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR---ENFLSAYEESTCDMKRAIETRDRKLTVLHE 131 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR---E~Fi~~Ye~stcemk~sIe~~dr~l~VlsE 131 (358)
+...+.........++.+...+......+++.+.+++..|++|=..- ...+..|..---.+++.|+.++ +..
T Consensus 367 ~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~-----lpg 441 (569)
T PRK04778 367 ITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSN-----LPG 441 (569)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC
Confidence 33333333344444444555555555555555555555555543221 1224444433333444333332 111
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhcccccch-h-hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHH
Q 040671 132 KINSHLTLFDSIEKEAFSIKQVVDNVECV-P-YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQR 197 (358)
Q Consensus 132 KLnshl~LFdSIekEa~svKqvld~vq~l-v-~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqr 197 (358)
=-...+..|..+..++..++.-++. ..+ + .+.+-+..=..-+.+|......|..-...++-++|.
T Consensus 442 ip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 442 LPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245688999999999999999988 332 1 344333333355788888888888888888877775
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.75 E-value=8.2 Score=35.73 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=62.7
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLH 130 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~Vls 130 (358)
.+..++.|+....-.++.|...+.-|++.|+.||+...++...+..-++....-|...+.--=.|++.|...-+..-.|
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L- 288 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL- 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH-
Confidence 3444455555555566778888888888899999999999888888888877777777765555554443322221111
Q ss_pred HhhhhhhhhhhhhhhhHHHHhhhcc
Q 040671 131 EKINSHLTLFDSIEKEAFSIKQVVD 155 (358)
Q Consensus 131 EKLnshl~LFdSIekEa~svKqvld 155 (358)
+.+==+.+.|++.-...|+
T Consensus 289 ------l~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 289 ------LDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp ------HHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHhHHHHHHHHHHHHh
Confidence 1111256777777666654
No 25
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.54 E-value=17 Score=40.98 Aligned_cols=140 Identities=24% Similarity=0.289 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhh---hhhccchHHHHH
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKV---SYLQNDNALLEN 85 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kI---k~Lenen~~LEk 85 (358)
++.++-++..|-|..=+-=.+...+++-..|-++....+.+-+.+-||.|++-.+-.+.-+|... .-++|.+...++
T Consensus 345 ~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ 424 (980)
T KOG0980|consen 345 LKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAEN 424 (980)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444433322222333444444444444455555555677777777777777776655 888888888888
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhh-----------------hhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHH
Q 040671 86 KQKELKETINRLLQYRENFLSAYEEST-----------------CDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAF 148 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~Fi~~Ye~st-----------------cemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~ 148 (358)
+...+|+-+-.|-+-....+.-|.+-. -.+..+|+..++...++.-|.-+-..+.++.+.|..
T Consensus 425 ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 425 RYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888888888877776666666554432 334445555555555655677777777777777754
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.21 E-value=14 Score=38.11 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 040671 34 IHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTC 113 (358)
Q Consensus 34 ~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stc 113 (358)
.......|+..-++...++..|..++.+..++--+|... +..++.-+++|+..+.+-+.+.. ..+....
T Consensus 209 ~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a-------~~~l~~Lq~El~~~~~~~l~~~~----~~~~~~~ 277 (522)
T PF05701_consen 209 REQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA-------SAELESLQAELEAAKESKLEEEA----EAKEKSS 277 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhH----Hhhhhhh
Confidence 334556777777777778888888885555555554433 35555556666666665555532 2223333
Q ss_pred hhHhhhhhcch-------hhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHH
Q 040671 114 DMKRAIETRDR-------KLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHL 186 (358)
Q Consensus 114 emk~sIe~~dr-------~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~ 186 (358)
.++-.+..--. .|-.+.+=++.-....+|+..|+..+|.-+... +.-.-.-+..|..|..+...+..
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~l------ke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERL------KEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHhhHHHHHHHHHH
Confidence 33322221111 122222222333344444444444444433332 22233333446666666666666
Q ss_pred hhhhHHHHHHHHHHH
Q 040671 187 EVGKLGIILQRIQDA 201 (358)
Q Consensus 187 El~~leiiLqrfQd~ 201 (358)
||..+...-.+..+.
T Consensus 352 eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 352 ELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHhhhcchhhh
Confidence 665544444433333
No 27
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.89 E-value=20 Score=43.10 Aligned_cols=151 Identities=21% Similarity=0.230 Sum_probs=100.8
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhc
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRN-------EEEYSRNLKELQSELASTNELCQKLERKVSYLQ 77 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~-------EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Le 77 (358)
.|.|.+.+|-+.+.+....=++++..|+|+.-...|.... -++...++.+|+.+++.....+..|..++..++
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4678889999999999999999999999998555554332 234567788899999999999999999999999
Q ss_pred cchHHHHHhHHHHHHHHHHHHHhhH---HHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhc
Q 040671 78 NDNALLENKQKELKETINRLLQYRE---NFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVV 154 (358)
Q Consensus 78 nen~~LEkn~keLK~ti~~LLQSRE---~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvl 154 (358)
.+.+++.+..++|...|.-|.++=| +=..-++...-+|...++.=...+--....+.+.+.+=..-+.|+...++-+
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887766422 2222223222333333332222222222333344444444455555555544
Q ss_pred c
Q 040671 155 D 155 (358)
Q Consensus 155 d 155 (358)
.
T Consensus 1170 e 1170 (1930)
T KOG0161|consen 1170 E 1170 (1930)
T ss_pred H
Confidence 3
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.52 E-value=25 Score=42.20 Aligned_cols=192 Identities=17% Similarity=0.280 Sum_probs=125.9
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHH------------------------HHHHHHHHhhHHHHHHhHHHHHHHhhh
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEI------------------------HLLVQKQKRNEEEYSRNLKELQSELAS 61 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~------------------------~~~iQk~K~~EEe~~Re~~ELqaElas 61 (358)
+.+|+-+|++|-.||+++|.--+....+. +..-+..-.+=-.+.+.++.+-.|+.+
T Consensus 656 ~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~ 735 (1822)
T KOG4674|consen 656 LKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLS 735 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999999987655544332 233333334444566777788899999
Q ss_pred cHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH----------HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHH
Q 040671 62 TNELCQKLERKVSYLQNDNALLENKQKELKETINRLL----------QYRENFLSAYEESTCDMKRAIETRDRKLTVLHE 131 (358)
Q Consensus 62 ~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL----------QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsE 131 (358)
+++-+.+|+..|.-|--|+.+|-.-+..|+...+.|+ ..=.+|.+..+.+...-+...+.+-..+.---.
T Consensus 736 a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~ 815 (1822)
T KOG4674|consen 736 ANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQ 815 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877776655554 344678888888888888888877766665555
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhcccc-cchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhh
Q 040671 132 KINSHLTLFDSIEKEAFSIKQVVDNV-ECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDN 210 (358)
Q Consensus 132 KLnshl~LFdSIekEa~svKqvld~v-q~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~ 210 (358)
+|.+| .+.++.-++.+-++. ..|-|.+ .-|.-++++..-+.-++.+...-+....--+++|+..-+
T Consensus 816 ~lk~k------lq~~~~~~r~l~~~~~~~l~~~~-------~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 816 KLKKK------LQEKSSDLRELTNSLEKQLENAQ-------NLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLK 882 (1822)
T ss_pred HHHHH------HHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 355555555554322 2222333 224445555555555555555555554444444444433
No 29
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.92 E-value=4.8 Score=36.16 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=54.6
Q ss_pred HHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 38 VQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 38 iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
-++..+.|..|+.+.++|++.|....+..+.|+.+++-+--..+-|+..+.+||...+++-+.=...+..|.+
T Consensus 77 e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e 149 (158)
T PF09744_consen 77 EEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKE 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666788888888888888888888888888887766666677777777777777776655556666654
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.77 E-value=18 Score=35.79 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=15.3
Q ss_pred CchhhhhhccccceeeeccccccceeeccCCC
Q 040671 301 DSSEQQSSTNILMRISAKDVKDTCVVSAHHPD 332 (358)
Q Consensus 301 d~~e~~s~~n~~~~is~~~~k~~~~~~~hh~d 332 (358)
|......-.+.+-.+ + ..++..+.|+++
T Consensus 511 d~~~~~~~~~~l~~~--~--~~~iiiish~~~ 538 (562)
T PHA02562 511 DAEGTKALLSILDSL--K--DTNVFVISHKDH 538 (562)
T ss_pred chhHHHHHHHHHHhC--C--CCeEEEEECchh
Confidence 444455555665655 2 235566777753
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.72 E-value=12 Score=34.40 Aligned_cols=94 Identities=26% Similarity=0.352 Sum_probs=59.4
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhh
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKL 126 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l 126 (358)
+..|++.-+..+|.-+.+-...+|++|.-|+.+...+.++.+.|.-.-...-+.- ..|++ +|
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re----~~~e~--------------~i 178 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE----DEYEE--------------KI 178 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH----HHHHH--------------HH
Confidence 4456666777777777777777777777777777777776666655544333322 23332 56
Q ss_pred HHHHHhhhhhhhhhhhhhhhHHHHhhhccccc
Q 040671 127 TVLHEKINSHLTLFDSIEKEAFSIKQVVDNVE 158 (358)
Q Consensus 127 ~VlsEKLnshl~LFdSIekEa~svKqvld~vq 158 (358)
..|.+||...-.=.+..++.|...-.-+|.+.
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777766666555555443
No 32
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.59 E-value=7.4 Score=35.81 Aligned_cols=92 Identities=16% Similarity=0.306 Sum_probs=59.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 17 IAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 17 isEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
+..+...-.+-..+.-+...-+++|.....+...+.+.|.+|+....--.++|++.|.-++.+.+.|+....++..+-+.
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566667777777777777777777777777777777777777777777777776666666655555
Q ss_pred HHHhhHHHHHHH
Q 040671 97 LLQYRENFLSAY 108 (358)
Q Consensus 97 LLQSRE~Fi~~Y 108 (358)
|.-.=..++..+
T Consensus 103 l~p~m~~m~~~L 114 (251)
T PF11932_consen 103 LVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHH
Confidence 544433444433
No 33
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.16 E-value=5.6 Score=43.50 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=76.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhh-----------
Q 040671 8 KFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYL----------- 76 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~L----------- 76 (358)
.++-+|..|-.|-..|-..-.++..++..+-.+.++.| ..+.+|+++++..++.-..+|..++++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E----~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESE----QKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567777777877777766677777777777776655 468899999999999999999999998
Q ss_pred ---ccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhh
Q 040671 77 ---QNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRA 118 (358)
Q Consensus 77 ---enen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~s 118 (358)
+.++..|-.+...|...|+.-=+.=+-+.-.|.+.-++|++.
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 556666666666666666555444455555566666666543
No 34
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.15 E-value=11 Score=40.04 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=52.1
Q ss_pred hhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhcccccCcc-ccchhHHhHhh
Q 040671 163 LQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKENCNDIGTVN-EDTRWLDRVKD 241 (358)
Q Consensus 163 LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe~~Ddvg~~~-e~t~~~d~v~e 241 (358)
+.--+..||..+..|..+.+.|-.. -+.-+-.+||=||+.|+--..--...-+..-.....+++... .-.|+..++.|
T Consensus 459 ~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 459 IEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3345667888888888888888777 578888999999999886554443333333333334433211 22344566777
Q ss_pred hhhc
Q 040671 242 ANYN 245 (358)
Q Consensus 242 ~~qn 245 (358)
.+|.
T Consensus 538 lifr 541 (594)
T PF05667_consen 538 LIFR 541 (594)
T ss_pred HHHH
Confidence 7754
No 35
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=90.00 E-value=0.61 Score=46.55 Aligned_cols=44 Identities=36% Similarity=0.457 Sum_probs=26.7
Q ss_pred HHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 39 QKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 39 Qk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
+|-+++..|+||++.|. ..=||+||.-|||.|..|=...|.||+
T Consensus 297 mKNREAARECRRKKKEY----------VKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEY----------VKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HhhHHHHHHHHHhHhHH----------HHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 35566777888888764 344566666666666555555454443
No 36
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=89.63 E-value=2.8 Score=41.16 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=75.6
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhH---------------HH-HHHHHHHH----HhhHHHHHHhHHHHHHHhhhcHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSAT---------------EE-IHLLVQKQ----KRNEEEYSRNLKELQSELASTNE 64 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sar---------------eE-~~~~iQk~----K~~EEe~~Re~~ELqaElas~~E 64 (358)
++....||||+|.-|+++|. +|-.+= +| ...+-... .....+|..-+.-|.-|+..|.+
T Consensus 27 ~vD~~~LqLqNl~YE~~hL~-kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~RL~~EL~~Rk~ 105 (355)
T PF09766_consen 27 EVDALHLQLQNLLYEKSHLQ-KEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLARLEFELEQRKR 105 (355)
T ss_pred hhhHHHHHHhHHHHHHHHHH-HHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHHHHHHHHHHHHHH
Confidence 45677899999999999998 333221 12 22222222 13456788889999999999884
Q ss_pred ---HHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 65 ---LCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 65 ---~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
.+++|+.+.+-|+.+|....+....|...|+.|+.+=.-+-+.+.
T Consensus 106 L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 106 LEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 456778888888888888888888888888888887766666654
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.61 E-value=3.6 Score=39.53 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 040671 9 FKFQLQALIAETRHLKEK 26 (358)
Q Consensus 9 fklqLqaLisEvR~LRer 26 (358)
+.-+..+|..|++.||.+
T Consensus 182 l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 182 LRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444555555443
No 38
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.27 E-value=34 Score=36.53 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=51.9
Q ss_pred hhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHH---------HHHHHHhcChhhhhhhhhhhhhhhhcccccCccccchh
Q 040671 165 KTLSAKDVVIQNLISEKEALHLEVGKLGIILQR---------IQDAIATMNQEDNNAFHTALMLKENCNDIGTVNEDTRW 235 (358)
Q Consensus 165 KsllvKD~~I~~L~sekqAl~~El~~leiiLqr---------fQd~~s~m~~E~~k~Fssil~~Qe~~Ddvg~~~e~t~~ 235 (358)
|.+-=-+.-|.....|--.|+.||.++..-|+| |+|+= =++..++.+--+-..-++|+.+...=++|..
T Consensus 498 ~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK--kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~ 575 (594)
T PF05667_consen 498 KNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK--KDEAARKAYKLLASLHENCSQLIETVEETGT 575 (594)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444566889999999999999999999988 34432 4667788888888888999887655555543
No 39
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.36 E-value=20 Score=43.00 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
|.-|+-.|.-|++.||..=..-..++|.+.-.....-+.+++.+.++..+..+.-..+..++..|.-|+...+.|++..+
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLK 882 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444444455555555555555555555555666666556666666666666666666666666
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHh-------hhhhhhhhhhhhhhHHHHhhhcccccchh
Q 040671 89 ELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEK-------INSHLTLFDSIEKEAFSIKQVVDNVECVP 161 (358)
Q Consensus 89 eLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEK-------Lnshl~LFdSIekEa~svKqvld~vq~lv 161 (358)
+.+....++=+ . .|-.-+-....++...--++.++-++ |--|..+|.+-++=+..+|..+++++.-+
T Consensus 883 ~~~~~~~~l~~-~-----~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ 956 (1822)
T KOG4674|consen 883 SAKTQLLNLDS-K-----SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLEL 956 (1822)
T ss_pred HhHHHHhhccc-c-----chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65555444332 1 22222233333344444444444444 44578899999999999999999998765
No 40
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.99 E-value=15 Score=31.06 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=78.9
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLE 84 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE 84 (358)
.++.|+..++.+...+.....+...++.++......|+.+...|.|++.-=- ..-..++.|.....-++.+...|.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha----~~~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHA----EDIKELQQLREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888899999999999999999999999999999999999875322 223445555555555555555555
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHH
Q 040671 85 NKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTV 128 (358)
Q Consensus 85 kn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~V 128 (358)
......+..+...=.|-+.=-..|+.--.+++..|+-=+.+=.+
T Consensus 80 ~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~l 123 (132)
T PF07926_consen 80 AEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKL 123 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444455555555555555444434333
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.32 E-value=45 Score=35.67 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=10.6
Q ss_pred HHhhhhhhhhhhhhhhhHHHHhhhc
Q 040671 130 HEKINSHLTLFDSIEKEAFSIKQVV 154 (358)
Q Consensus 130 sEKLnshl~LFdSIekEa~svKqvl 154 (358)
.+.|-.=...+.+-++++.-.+.=|
T Consensus 289 keqLr~~qe~lqaSqq~~~~L~~EL 313 (546)
T PF07888_consen 289 KEQLRSAQEQLQASQQEAELLRKEL 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433
No 42
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=87.10 E-value=9.3 Score=30.70 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=46.4
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhh
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDM 115 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcem 115 (358)
.+...-.++|+..+.+..+.+.-|++.|...+...+.--=.. .=|+.|..||..++.--..|
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~--------~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSE--------EEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCH--------HHHHHHHHHHHHHHHHHHhc
Confidence 455667788999999999999999999999888866531111 22889999999988654444
No 43
>PRK09039 hypothetical protein; Validated
Probab=86.54 E-value=31 Score=33.87 Aligned_cols=184 Identities=11% Similarity=0.147 Sum_probs=91.3
Q ss_pred hHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhh---hhhhHhhhh
Q 040671 44 NEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEES---TCDMKRAIE 120 (358)
Q Consensus 44 ~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~s---tcemk~sIe 120 (358)
.=.+.+.++.+|+++|+...+.+.- =.+.+..|+....+++.++..+...|+.--..|... .-+++....
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~l-------e~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~ 119 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSL-------ERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG 119 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHH
Confidence 3456667777777777775544321 112233444444444444445445554444444422 123332222
Q ss_pred hcchhhHHHHHhhhhhhhhhh-------hhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHh-hhhH
Q 040671 121 TRDRKLTVLHEKINSHLTLFD-------SIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLE-VGKL 191 (358)
Q Consensus 121 ~~dr~l~VlsEKLnshl~LFd-------SIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~E-l~~l 191 (358)
.. ..+|..-..++. -+-.++.+++.-+..++.-+ ..+...-..+..|+.|..+.++...+ +..|
T Consensus 120 ~l-------~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 120 EL-------AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred HH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233333333333 33444445554444444333 23334444555677777777777644 7776
Q ss_pred HHHHHHH----HHHHHhcC----hhhhhhhhhhhhhhhhcccccCccccchhHHhHhhhh
Q 040671 192 GIILQRI----QDAIATMN----QEDNNAFHTALMLKENCNDIGTVNEDTRWLDRVKDAN 243 (358)
Q Consensus 192 eiiLqrf----Qd~~s~m~----~E~~k~Fssil~~Qe~~Ddvg~~~e~t~~~d~v~e~~ 243 (358)
+..=..| .++..... .-++-+|++-..|.-++..+. .+....+++|-.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~~vlF~~gsa~L~--~~~~~~L~~ia~~l 250 (343)
T PRK09039 193 NRYRSEFFGRLREILGDREGIRIVGDRFVFQSEVLFPTGSAELN--PEGQAEIAKLAAAL 250 (343)
T ss_pred HHhHHHHHHHHHHHhCCCCCcEEECCEEEecCCceeCCCCcccC--HHHHHHHHHHHHHH
Confidence 6665555 33332210 123445677677777777665 34444566665555
No 44
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.40 E-value=6.6 Score=41.47 Aligned_cols=115 Identities=30% Similarity=0.395 Sum_probs=66.2
Q ss_pred hhcHHHHHHH-------HhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHh
Q 040671 60 ASTNELCQKL-------ERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEK 132 (358)
Q Consensus 60 as~~E~~qkL-------E~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEK 132 (358)
++-+|+++|| +.+|--||-.|.-||+++++|.+.+-. -.-||.-.-..-=-++--|+- +--|+-||
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~k----QqvfvDiinkLk~niEeLIed---KY~viLEK 385 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITK----QQVFVDIINKLKENIEELIED---KYRVILEK 385 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHh---HhHhhhhh
Confidence 4555555555 456677777777788888887765521 122332222111112222222 22233333
Q ss_pred hhhhhhhhhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 133 INSHLTLFDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 133 Lnshl~LFdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
..+...+.|.|++. ..||-|... ..+|+.|.+|++.+..=--+.|+-..
T Consensus 386 ---------------nd~~k~lqnLqe~la~tqk~LqEs-------r~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 386 ---------------NDIEKTLQNLQEALANTQKHLQES-------RNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 23666777777766 455555443 57889999999999988888887543
No 45
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=86.27 E-value=59 Score=36.02 Aligned_cols=182 Identities=22% Similarity=0.323 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhhhhh--hhhH-----HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 13 LQALIAETRHLKEKE--NSAT-----EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 13 LqaLisEvR~LRerE--~sar-----eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
+.-|=.|||.||+-. ...| +|+. +...+|.--+-++.+||+-+|-+...+..||-..+ ..||.
T Consensus 75 ~rrle~e~~~lre~sl~qkmrLe~qa~Ele----~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q------~ELee 144 (739)
T PF07111_consen 75 LRRLEEEVRALRETSLQQKMRLEAQAEELE----ALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQ------RELEE 144 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHH------HHHHH
Confidence 345667888888763 2232 3333 55566666777889999999999999999986663 36677
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcch---------------------hhHHHHHhhhhhhhhhhhhh
Q 040671 86 KQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDR---------------------KLTVLHEKINSHLTLFDSIE 144 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr---------------------~l~VlsEKLnshl~LFdSIe 144 (358)
-++.=+..+..|-+.-..-++++-..+++++.+++.-.. +++-..+.|.+-.+|-++.-
T Consensus 145 ~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR 224 (739)
T PF07111_consen 145 AQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLR 224 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 788888899999999888889998888888875533221 22223333444333333333
Q ss_pred hhHHHHhhhcccccchhh-hhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 145 KEAFSIKQVVDNVECVPY-LQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 145 kEa~svKqvld~vq~lv~-LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
+-|- -++-.++++-.| .+|--+ ..+|..|--|+.+|+.=+.-|-.=|+-..+|.+..-+|
T Consensus 225 ~YvG--eq~p~~~~~~~we~Er~~L--~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeE 285 (739)
T PF07111_consen 225 KYVG--EQVPPEVHSQAWEPEREEL--LETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEE 285 (739)
T ss_pred HHHh--hhCCcccccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 223334443332 222111 14577888888888887777777777777766654433
No 46
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.12 E-value=7.7 Score=37.63 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=26.0
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
+.+++.|+..+..|.......-.... ..+......++...+++.|..|.....+.++.||..-.-+..+...|++
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~-----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE-----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp ------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555443322222 1112222333333344444444444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHHhhHHHH
Q 040671 86 KQKELKETINRLLQYRENFL 105 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~Fi 105 (358)
..+.++..-......++.|-
T Consensus 86 e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 86 ELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 47
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=85.85 E-value=28 Score=31.78 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=43.9
Q ss_pred HHHHhhhhhhhh----HHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhh
Q 040671 19 ETRHLKEKENSA----TEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVS 74 (358)
Q Consensus 19 EvR~LRerE~sa----reE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk 74 (358)
|+|.|| ||..+ -..|-.+-|||.+.|++|.-=++-+|.-|+...-..--+|.-|+
T Consensus 2 El~~~r-~E~k~r~~a~~~CI~Lk~rFEekE~eWsdWLk~~R~~I~~~~~~f~~Fe~~~~ 60 (182)
T PF05218_consen 2 ELRKMR-RESKQRFAAFLQCIQLKQRFEEKEQEWSDWLKKLRQPIVRLKNRFSDFEDEIK 60 (182)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 555665 34433 46788899999999999999999999999988877777777766
No 48
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.74 E-value=6.5 Score=33.70 Aligned_cols=74 Identities=24% Similarity=0.225 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 15 ALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 15 aLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
-|+.|.--|| .-.+-||.+==+..-+..+|+.+|-..+-+++++|..+.-|.=-|.+|++.+..|...|
T Consensus 2 kla~eYsKLr-----------aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 2 KLAQEYSKLR-----------AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred hHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555665555 66677888877778888899999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 040671 95 NRLLQ 99 (358)
Q Consensus 95 ~~LLQ 99 (358)
...-+
T Consensus 71 ~~~~~ 75 (102)
T PF10205_consen 71 EESEQ 75 (102)
T ss_pred HHhhc
Confidence 85433
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=56 Score=35.98 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhHHHHHH--------HhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 29 SATEEIHLLVQKQKRNEEEYSRNLKELQS--------ELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 29 sareE~~~~iQk~K~~EEe~~Re~~ELqa--------Elas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
.|+-|....-|+.+...++.+.+++...- ++++--+.+++++.--+|+-.++.-.=--.-+....+..|+|.
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~e 476 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQE 476 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888877774332 3444455666666666666666555444444455555555554
Q ss_pred hHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhh
Q 040671 101 RENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLF 140 (358)
Q Consensus 101 RE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LF 140 (358)
.+ +.-|+-+..++|+++.|...+
T Consensus 477 l~-----------------ekdd~nfklm~e~~~~~q~~k 499 (698)
T KOG0978|consen 477 LR-----------------EKDDKNFKLMSERIKANQKHK 499 (698)
T ss_pred HH-----------------HHHhHHHHHHHHHHHHHHHHH
Confidence 32 355677888899999988755
No 50
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.05 E-value=54 Score=36.43 Aligned_cols=157 Identities=20% Similarity=0.294 Sum_probs=97.4
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhh
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKI 133 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKL 133 (358)
|+-.-+-.+.+-.|.+|--|.-..-.+-.||++...|+.+|.+- ..+|..++..+=-++..|-+-++++.|+-=|+
T Consensus 563 Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk----~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikV 638 (786)
T PF05483_consen 563 EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK----NKNIEELQQENKALKKKITAESKQSNVYEIKV 638 (786)
T ss_pred HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666677777777777888888888888888854 56677766666677766666666666665555
Q ss_pred hhhhhhhhhhhhhHHHHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhh
Q 040671 134 NSHLTLFDSIEKEAFSIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAF 213 (358)
Q Consensus 134 nshl~LFdSIekEa~svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~F 213 (358)
| ..+.|.-.+|+..+.-.+ .++|-|..| =+++ ..|.+||+.++.+.- +++-...+-|
T Consensus 639 n-------~L~~E~e~~kk~~eE~~~--~~~keie~K------~~~e-~~L~~EveK~k~~a~---EAvK~q~Etd---- 695 (786)
T PF05483_consen 639 N-------KLQEELENLKKKHEEETD--KYQKEIESK------SISE-EELLGEVEKAKLTAD---EAVKLQEETD---- 695 (786)
T ss_pred H-------HHHHHHHHHHhHHHHHHH--HHHHHHHHh------hhhH-HHHHHHHHHHHHHHH---HHHHhHHHHH----
Confidence 5 456677777765554332 244444444 1222 457788888776532 3333333333
Q ss_pred hhhhhhhh-hcccccCccccchhHHhHh
Q 040671 214 HTALMLKE-NCNDIGTVNEDTRWLDRVK 240 (358)
Q Consensus 214 ssil~~Qe-~~Ddvg~~~e~t~~~d~v~ 240 (358)
+.||. +.|||.+-..|-...|+|-
T Consensus 696 ---lrCQhKIAeMVALMEKHK~qYDkiV 720 (786)
T PF05483_consen 696 ---LRCQHKIAEMVALMEKHKHQYDKIV 720 (786)
T ss_pred ---HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34554 4477777777777777763
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.02 E-value=59 Score=34.84 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=72.3
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHH----HHHHHHHHHHhhHHHH-------HHHhhhhhhhHh
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKE----LKETINRLLQYRENFL-------SAYEESTCDMKR 117 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ke----LK~ti~~LLQSRE~Fi-------~~Ye~stcemk~ 117 (358)
++++.=|+.|+++.--.+.+.-...-....++++|....++ ||+.--.+-|-|+++- ..-+...+++.
T Consensus 303 qq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~- 381 (546)
T PF07888_consen 303 QQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQ- 381 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence 45556666666666666666655555555666666544443 3333333444444332 11222222222
Q ss_pred hhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHh-hhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHH
Q 040671 118 AIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIK-QVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQ 196 (358)
Q Consensus 118 sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svK-qvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLq 196 (358)
+..+ -+.|+-..-..|=--|++|-.+-. |+-+..+.|-+|+++|.+=-.-=+-|.-+||.|.-.|+.|+.=|.
T Consensus 382 ---~~e~---~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 382 ---MLEE---HLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred ---HHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112222222233333344433332 444444445577776665445556788888888888888886555
Q ss_pred HH
Q 040671 197 RI 198 (358)
Q Consensus 197 rf 198 (358)
+.
T Consensus 456 ~~ 457 (546)
T PF07888_consen 456 KV 457 (546)
T ss_pred Hh
Confidence 44
No 52
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=6.9 Score=42.32 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=48.2
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
.++.+-++.....-..+|+++|.-|+.+|+.|+....++|..|..|-.-.+.|...+.
T Consensus 410 ~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777788888899999999999999999999999999888888888877666
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.70 E-value=62 Score=37.29 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=54.6
Q ss_pred hhhhhhhHHHHhhhcccccch--------hhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH-hcChhhh
Q 040671 140 FDSIEKEAFSIKQVVDNVECV--------PYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA-TMNQEDN 210 (358)
Q Consensus 140 FdSIekEa~svKqvld~vq~l--------v~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s-~m~~E~~ 210 (358)
|--+|.-=...|..|=..++| +-++|-+.-|---++.|+.-|+-|..++..+|.++--||+-|+ .||-|.|
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~M 449 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEM 449 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Confidence 444555555555555444444 3577888888888999999999999999999999999999875 5776665
Q ss_pred h
Q 040671 211 N 211 (358)
Q Consensus 211 k 211 (358)
.
T Consensus 450 V 450 (1243)
T KOG0971|consen 450 V 450 (1243)
T ss_pred H
Confidence 3
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.63 E-value=6.7 Score=37.57 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=8.6
Q ss_pred hhccchHHHHHhHHHHHHHHHH
Q 040671 75 YLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 75 ~Lenen~~LEkn~keLK~ti~~ 96 (358)
-|+-+...|.+....|.+.+..
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444333
No 55
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.45 E-value=26 Score=30.38 Aligned_cols=52 Identities=33% Similarity=0.458 Sum_probs=20.8
Q ss_pred HHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 41 QKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 41 ~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
+++.-+...++.++|+.++-...+..+.+...+.-++.+...++....+++.
T Consensus 135 l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 135 LDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333333333333333344444444444444444433
No 56
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.28 E-value=13 Score=36.30 Aligned_cols=79 Identities=25% Similarity=0.241 Sum_probs=39.1
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhh-------HHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccc
Q 040671 7 SKFKFQLQALIAETRHLKEKENSA-------TEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQND 79 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sa-------reE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lene 79 (358)
.++.-.++.|-.|++.||....-. ...++..+..+...-+..++++.+++.++...+...+....++.-++.+
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~ 254 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE 254 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666544332 1233333333333344445555555555555555555555555555544
Q ss_pred hHHHHH
Q 040671 80 NALLEN 85 (358)
Q Consensus 80 n~~LEk 85 (358)
...+|+
T Consensus 255 I~~ae~ 260 (312)
T smart00787 255 IAEAEK 260 (312)
T ss_pred HHHHHH
Confidence 444444
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.07 E-value=29 Score=37.59 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 28 NSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 28 ~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
-.||+|+..-+..++..-+.|..++++|+.++....+...+|..|++....--+.|.++.+.+-..+
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888999999999999999999999888888888877666555555555554444433
No 58
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.81 E-value=19 Score=36.04 Aligned_cols=52 Identities=31% Similarity=0.370 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALL 83 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~L 83 (358)
+=+..+.||||++.|+-.-+..-|+-|.-+--|.|..||+.-.-|..|.-.-
T Consensus 42 eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 42 ESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 5678899999999999999999999999999999999999887777765433
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.74 E-value=84 Score=35.60 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHhhhhHHH-HHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhh
Q 040671 173 VIQNLISEKEA-LHLEVGKLGIILQRIQDAIATMNQEDNNAFHTA 216 (358)
Q Consensus 173 ~I~~L~sekqA-l~~El~~leiiLqrfQd~~s~m~~E~~k~Fssi 216 (358)
.|..++...+. +..-..++..-|..|.+.+..++........-|
T Consensus 971 ~~~~~~~~~~~~l~e~~~~~~~~i~~f~~~l~~~~r~I~~~s~~l 1015 (1201)
T PF12128_consen 971 LLDVLIPQQQQALIEQGRNIGNDISNFYGVLEDFDRRIKSQSRRL 1015 (1201)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56777777555 555566677777888888888877665544444
No 60
>PRK09039 hypothetical protein; Validated
Probab=83.54 E-value=23 Score=34.82 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=43.7
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
.+..+++.-|++||++-..-+.+||..|.-.|........+..+|+..|+..|..|-.=+..|.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~ 196 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYR 196 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455667777777777777777777777777777777777777777777777755444444444
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.49 E-value=18 Score=33.24 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
..+...+++|-+++..-..++..+..|-...-+..+.|++.+.-|+..|..+++-...++..|..|=+.-++.-....
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665555555555555555555555555555555555655555555555555555444444433333
No 62
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.29 E-value=34 Score=38.27 Aligned_cols=166 Identities=22% Similarity=0.240 Sum_probs=90.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 8 KFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
|+--+|-+==++||.+++|-++.-+-+.++-++.-++-. --.+-|+.|+++-+.++..+=|-+.--.+.-...|+-+-
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQL 172 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344455555578999999999988888888777766554 444556666666666655554444333333333333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhH----hhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhhh
Q 040671 88 KELKETINRLLQYRENFLSAYEESTCDMK----RAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPYL 163 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~~Ye~stcemk----~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~L 163 (358)
.++...++.+-|-=+.=..| +-.+- --++.+-+.....-||.| ..+.|..++|+-+...+
T Consensus 173 qe~naeL~rarqreemneeh----~~rlsdtvdErlqlhlkermaAle~kn-------~L~~e~~s~kk~l~~~~----- 236 (916)
T KOG0249|consen 173 EELNAELQRARQREKMNEEH----NKRLSDTVDERLQLHLKERMAALEDKN-------RLEQELESVKKQLEEMR----- 236 (916)
T ss_pred HHHHHHHHHHHHHHHhhhhh----ccccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----
Confidence 33333333333321111111 11111 112333334444444444 46677777777655432
Q ss_pred hhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHH
Q 040671 164 QKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQ 199 (358)
Q Consensus 164 qKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQ 199 (358)
..| ++|-.+++.|..|+.-|+.-.++++
T Consensus 237 ----~~k----~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 237 ----HDK----DKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred ----HHH----HHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 233 4577788888888888886555555
No 63
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.26 E-value=78 Score=34.89 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=54.1
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhcccccCccccchhHHhHhhhhh
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKENCNDIGTVNEDTRWLDRVKDANY 244 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe~~Ddvg~~~e~t~~~d~v~e~~q 244 (358)
..|..|-+|..++..-.+.-...|---||......++=...++.|-.|...+ .++-++|.+++.-+
T Consensus 419 eri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeT-------PnRVmLD~yr~~r~ 484 (717)
T PF09730_consen 419 ERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGET-------PNRVMLDYYRQGRQ 484 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------CccHHHHHHHhhhh
Confidence 4688899999999999999999999999999999999999999998877443 23336788887663
No 64
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.15 E-value=79 Score=36.59 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=32.1
Q ss_pred hHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHH
Q 040671 44 NEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNAL 82 (358)
Q Consensus 44 ~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~ 82 (358)
.-+.+.+++.+++++|-....++.+-+.+|+-+|+++.-
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d 780 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKD 780 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345677888899999999999999999999888887653
No 65
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.45 E-value=75 Score=35.20 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH----HhHHHHHHHHHHHH-----HhhH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLE----NKQKELKETINRLL-----QYRE 102 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE----kn~keLK~ti~~LL-----QSRE 102 (358)
++.+..+.|.-..-+....+..-+++||..-.|.+.+-|++|+-|+-.++.|+ .+.+.|.+.-..|. ..=+
T Consensus 353 e~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~ 432 (775)
T PF10174_consen 353 EEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNED 432 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchH
Confidence 45555555555555667778888899999999999999999999999876666 45555665555555 1111
Q ss_pred HHHHHHhhhhhhhHhhhhhcc----hhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh-hhh-hhhhhhhHHHHH
Q 040671 103 NFLSAYEESTCDMKRAIETRD----RKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP-YLQ-KTLSAKDVVIQN 176 (358)
Q Consensus 103 ~Fi~~Ye~stcemk~sIe~~d----r~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv-~Lq-KsllvKD~~I~~ 176 (358)
.-...|+++.-+..+.|+.=+ +----..|-| +.-.+|..-.+.-++..|.=+ ..+ --+.+|+. +..
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eel-------e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee-~s~ 504 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKERQEEL-------ETYQKELKELKAKLESLQKELSEKELQLEDAKEE-ASK 504 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH-HHH
Confidence 222334443333333333211 1111111222 222333333333322222111 000 01122322 233
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhh
Q 040671 177 LISEKEALHLEVGKLGIILQRIQDAIATMNQEDNN 211 (358)
Q Consensus 177 L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k 211 (358)
|.+.-.--..+|..++|.|.++.|=+..|..+-.+
T Consensus 505 l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 505 LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444677777778887777777766655554
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.11 E-value=14 Score=35.48 Aligned_cols=62 Identities=27% Similarity=0.275 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHH
Q 040671 28 NSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKE 89 (358)
Q Consensus 28 ~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ke 89 (358)
.+...|+..+-+...+.+..-.-++..|+++|++.+.....+-+.+.-++.+...++.+..+
T Consensus 187 ~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 187 AELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333333333334444555555544444444333333333333333333333
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.76 E-value=16 Score=33.87 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=17.9
Q ss_pred hHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccch
Q 040671 44 NEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDN 80 (358)
Q Consensus 44 ~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen 80 (358)
...++...+.+++..++.++.....|+.+-+-|..++
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 112 IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556666666665555444443333333333
No 68
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=81.67 E-value=5.7 Score=30.94 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=26.0
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..+++...|+.++..++.+...|+++.+.+...|+.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777766666553
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.62 E-value=9.6 Score=35.36 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
.+.||..|=.|+-.|+.+-. ..-+.|.+...+...++.++..++..-++-.++|...+.-+++++..|+.+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~-------~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLN-------NIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555553222 23344556666666666666666666666666666667777777777777666
Q ss_pred HHHHHH
Q 040671 89 ELKETI 94 (358)
Q Consensus 89 eLK~ti 94 (358)
.++.++
T Consensus 164 ~~~~~~ 169 (206)
T PRK10884 164 DKQRTI 169 (206)
T ss_pred HHHHHH
Confidence 666654
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.32 E-value=1.2e+02 Score=35.81 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhH---HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNE---EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~E---Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
-....||-|+=..|.|...|+..+...-++..+-+ ++...++..|+.+.....+-+..-+ ++..++.+...+....
T Consensus 279 eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~L 357 (1486)
T PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADL 357 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34567777887777777777765555554444433 3445555666666555554433222 2223344444444444
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcc---cccchh---
Q 040671 88 KELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVD---NVECVP--- 161 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld---~vq~lv--- 161 (358)
.+|...++...+.- ...++-..+++..++.-...+.-+.++++.-..-.+....++....+-+. .++.+.
T Consensus 358 eELee~Lee~eeeL----eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~ 433 (1486)
T PRK04863 358 EELEERLEEQNEVV----EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLP 433 (1486)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444443333322 23333333344444444445555555566555555555555544433332 222222
Q ss_pred -----hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHh
Q 040671 162 -----YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIAT 204 (358)
Q Consensus 162 -----~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~ 204 (358)
+|+..+.-=+..+..++.+...+..++..++..++.|+.....
T Consensus 434 ~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222334455555555556666666666666555443
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=80.94 E-value=62 Score=37.89 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=20.3
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHHHHH
Q 040671 174 IQNLISEKEALHLEVGKLGIILQRIQDA 201 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLqrfQd~ 201 (358)
...|.-.++-+..++-+|...|+++-+.
T Consensus 744 ~~~l~r~~~~~~~~vl~Lq~~LEqe~~~ 771 (1317)
T KOG0612|consen 744 LNELRRSKDQLITEVLKLQSMLEQEISK 771 (1317)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666777788888888888877654
No 72
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.81 E-value=52 Score=33.80 Aligned_cols=143 Identities=26% Similarity=0.277 Sum_probs=75.1
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH-----------HHHHHHHHHHHHhhHHHHHHHhhhhhhhHh-hh
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLENKQ-----------KELKETINRLLQYRENFLSAYEESTCDMKR-AI 119 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~-----------keLK~ti~~LLQSRE~Fi~~Ye~stcemk~-sI 119 (358)
+-+|+.|.....|-.+.|+..|.-+..|...+|... +++..++..++.. |+=+..|..-.+.++. -+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELS 354 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999977777665555432 3333333333333 1111122211111111 11
Q ss_pred hhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHH
Q 040671 120 ETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQR 197 (358)
Q Consensus 120 e~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqr 197 (358)
..++-.-.-+.+|++-=.-|+..+-.-+ +-. .-.++...+ .|--+|.-|=-.++.|+++|.++..-++.++.+++-
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~-~~s-~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARA-SSS-SWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHh-ccC-CcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 1112112223344333333333332222 000 011222221 233467788888999999999999999888888774
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.37 E-value=48 Score=30.52 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH---hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHH
Q 040671 14 QALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSR---NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 14 qaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~R---e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
..+-.++...+.|--.|-.|+..+-+|....|++..+ .+......|........-.|++.+-|++.....+.+...|
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~l 97 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEEL 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444445555555555555444333 1223344555555555566677777777777777777777
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHh
Q 040671 91 KETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIK 151 (358)
Q Consensus 91 K~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svK 151 (358)
...++..-..-+.--.-|++... .+..-...|.-+-+++...-.=+..++.++..+.
T Consensus 98 E~~l~ea~~~~ee~e~k~~E~~r----kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 98 EQQLKEAKRRAEEAERKYEEVER----KLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 77777766666666666775433 2223333344444444444444444444444433
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.30 E-value=48 Score=30.52 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=70.6
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHH-------HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccc
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEE-------YSRNLKELQSELASTNELCQKLERKVSYLQND 79 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe-------~~Re~~ELqaElas~~E~~qkLE~kIk~Lene 79 (358)
..++..++.|..|.|.||.=-. | -..+++|...++.+ |.-+++-|+..+-.+.+..+.++++++..+.+
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~--R--q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~e 97 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQK--R--QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEE 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888873211 1 11234555555544 45677788888888888888888888887777
Q ss_pred hHHHHHhHHHHHHHHH--HHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHH
Q 040671 80 NALLENKQKELKETIN--RLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHE 131 (358)
Q Consensus 80 n~~LEkn~keLK~ti~--~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsE 131 (358)
.--+....+-|+.-.. +|.. |+.-..-.. .++..++..|++|..|.-
T Consensus 98 l~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~----~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 98 LLKTKDELKHLKKLSEDKNLAE-REELQRKLS----QLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHcCCchh-HHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 7666665555554433 3333 555444444 344555566777766443
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.22 E-value=86 Score=35.74 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=22.2
Q ss_pred HHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhh
Q 040671 173 VIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTA 216 (358)
Q Consensus 173 ~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssi 216 (358)
.|+.++.-.+-|++|+.-|..-||-.|+..-.+..|.-++-.-+
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445555555555555555555555555544444444333333
No 76
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.86 E-value=46 Score=35.31 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=66.9
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhH
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMK 116 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk 116 (358)
-++.+|+.-++...++.+|..+..-..-+.+-+|++..-+++...-+.|..+++++-=+.|..-.-.....|++-.=..+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566666666666777766665555555556666666666555555555555554333343344445556666555667
Q ss_pred hhhhhcchhhHHHHHhhhhhhhhhhhh
Q 040671 117 RAIETRDRKLTVLHEKINSHLTLFDSI 143 (358)
Q Consensus 117 ~sIe~~dr~l~VlsEKLnshl~LFdSI 143 (358)
..+.++|.+|.-|.|-|+-=+.-||+=
T Consensus 428 ~~~~s~d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHheehhhh
Confidence 777788888988888888766666653
No 77
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.83 E-value=80 Score=32.71 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=45.7
Q ss_pred hhHHHHhhhcccccchhhhh--hhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhh
Q 040671 145 KEAFSIKQVVDNVECVPYLQ--KTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDN 210 (358)
Q Consensus 145 kEa~svKqvld~vq~lv~Lq--KsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~ 210 (358)
.|+.+++|+|.+-.+-...+ --|-.|-.+|..|.+.-|.|-+|+.++ ||-=-|...+|.....
T Consensus 172 aE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL---LQle~~~~e~~p~~~~ 236 (401)
T PF06785_consen 172 AEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL---LQLESDMKESMPSTPS 236 (401)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhcCCCCCc
Confidence 47888999988877665443 356677888999999999999999886 4444455555554433
No 78
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.73 E-value=5.8 Score=39.97 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=41.6
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHH---------------------HHHHHHhhHHHHHHhHHHHHHHhhhcHH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHL---------------------LVQKQKRNEEEYSRNLKELQSELASTNE 64 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~---------------------~iQk~K~~EEe~~Re~~ELqaElas~~E 64 (358)
+..++-||..|-.|++.++.+...+...+.. .+.+|.+.-.-+..++.+|++++...+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888766655543322 2234445555555555555555554444
Q ss_pred HHHHHHhhhhhhccc
Q 040671 65 LCQKLERKVSYLQND 79 (358)
Q Consensus 65 ~~qkLE~kIk~Lene 79 (358)
.++.|+.++..|+++
T Consensus 153 ~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 153 RIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 79
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=79.43 E-value=84 Score=32.75 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=52.5
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH----hhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhh
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQ----YRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDS 142 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ----SRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdS 142 (358)
-.+...+..+......+++.++++++.+++|=. .|+ -+..|+.---.++|.|+..+ |-.+ -.+++..|..
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~-~l~~~~~~l~~ikR~lek~n--LPGl---p~~y~~~~~~ 448 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEARE-KLQKLKQKLREIKRRLEKSN--LPGL---PEDYLDYFFD 448 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC--CCCC---CHHHHHHHHH
Confidence 334445555666666677777777777666522 221 13334443444444444333 0000 1567889999
Q ss_pred hhhhHHHHhhhcccccchh
Q 040671 143 IEKEAFSIKQVVDNVECVP 161 (358)
Q Consensus 143 IekEa~svKqvld~vq~lv 161 (358)
+..++..+..-|+.+.-=|
T Consensus 449 ~~~~i~~l~~~L~~~pinm 467 (560)
T PF06160_consen 449 VSDEIEELSDELNQVPINM 467 (560)
T ss_pred HHHHHHHHHHHHhcCCcCH
Confidence 9999999999998876544
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.29 E-value=46 Score=38.24 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 33 EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 33 E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
++...+++.|..-..+.|.+..++++. -+.+.....-++|+.+.|++....+.+.+..|=+..+.|.+.|.+
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777776 233334444444455555555555555666666777777776654
No 81
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.27 E-value=19 Score=34.31 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
.|+-.++.+...+|.- +.+.......|...+-... |.+|.++..+-..+|+.++.-.+.+.+-+++....|
T Consensus 114 ~R~~~ll~~l~~l~~~-----~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al 184 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN-----EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDAL 184 (216)
T ss_pred HHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777643 2222222222222222222 555555555556666666655555666666666666
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcc
Q 040671 91 KETINRLLQYRENFLSAYEESTCDMKRAIETRD 123 (358)
Q Consensus 91 K~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~d 123 (358)
+.+.+++.+-=....+.|. .++-.|+...
T Consensus 185 ~Kq~e~~~~EydrLlee~~----~Lq~~i~~~~ 213 (216)
T KOG1962|consen 185 KKQSEGLQDEYDRLLEEYS----KLQEQIESGG 213 (216)
T ss_pred HHHHHHcccHHHHHHHHHH----HHHHHHhccC
Confidence 6666666555444444444 3444444443
No 82
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.95 E-value=19 Score=33.00 Aligned_cols=119 Identities=25% Similarity=0.288 Sum_probs=83.7
Q ss_pred HHHHHHHHhhhhhhccchHHHHH---hHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhh
Q 040671 63 NELCQKLERKVSYLQNDNALLEN---KQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTL 139 (358)
Q Consensus 63 ~E~~qkLE~kIk~Lenen~~LEk---n~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~L 139 (358)
|+.+..++..+++| ..||. |++-|...|+.||.-+..=.+..++.- -+.+|+..|-++
T Consensus 65 dd~~~~f~~~~~tl----~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k---------------~le~~~~~~~~~ 125 (190)
T PF05266_consen 65 DDSRSSFESLMKTL----SELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERK---------------KLEKKIEEKEAE 125 (190)
T ss_pred CCcHHHHHHHHHHH----HHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHh
Confidence 44555666666655 34554 678888888888887755444444322 244566677778
Q ss_pred hhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 140 FDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 140 FdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
.+..|.+...+++-+...+.-. -+.+--..+|.-|.+|.++-+++--++.+++ .+||++++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e---~~F~~~~a 187 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE---LEFQSVAA 187 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 8888888888888777666543 2334567788889999999999999998887 47888765
No 83
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=78.65 E-value=96 Score=33.00 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh-HHHHHHHHHHHHHhhHHHHHHH
Q 040671 30 ATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENK-QKELKETINRLLQYRENFLSAY 108 (358)
Q Consensus 30 areE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn-~keLK~ti~~LLQSRE~Fi~~Y 108 (358)
+-.++..--+||-++|-+|.-=+.|||++|-+..-.-.|++..+. +||+ -.||++.|+.-.+---.||++|
T Consensus 275 ~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~--------~Ek~c~eEL~~al~~A~~GhaR~lEqY 346 (488)
T PF06548_consen 275 AEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELD--------SEKKCTEELDDALQRAMEGHARMLEQY 346 (488)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777778899999999999999999999998888888775442 2333 4689999999999999999999
Q ss_pred hhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhccc--ccc-----hhhhhh---hhh-hhhHHHHHh
Q 040671 109 EESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDN--VEC-----VPYLQK---TLS-AKDVVIQNL 177 (358)
Q Consensus 109 e~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~--vq~-----lv~LqK---sll-vKD~~I~~L 177 (358)
-+ |-||-|.-+..-..|-.-+.-||..... |.. +--|.. +|- -|..--..|
T Consensus 347 ad------------------LqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l 408 (488)
T PF06548_consen 347 AD------------------LQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFL 408 (488)
T ss_pred HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3344443333333333333334443221 111 111111 111 133334556
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 178 ISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 178 ~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
..++..|..-|..-.-++|---+....+.+.
T Consensus 409 ~~eNk~L~~QLrDTAEAVqAagEllvrl~ea 439 (488)
T PF06548_consen 409 KDENKGLQIQLRDTAEAVQAAGELLVRLREA 439 (488)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Confidence 7777777777777777777666666666554
No 84
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.52 E-value=70 Score=30.29 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHH---HHHH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENF---LSAY 108 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~F---i~~Y 108 (358)
+|+.++-.-.+..||+. +.|.|+---...-.+.|..+|--||++|..|--.-..+|..++.|---..+. |=+|
T Consensus 67 eEledLk~~~~~lEE~~----~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEEN----RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444444433 2344444444555566666666666666666666666666666552211111 3356
Q ss_pred hhhhhhhHhhhhhcchhh
Q 040671 109 EESTCDMKRAIETRDRKL 126 (358)
Q Consensus 109 e~stcemk~sIe~~dr~l 126 (358)
+..+|...-.+.-+.+++
T Consensus 143 e~l~~~~da~l~e~t~~i 160 (193)
T PF14662_consen 143 ESLICQRDAILSERTQQI 160 (193)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 666665554444444443
No 85
>PRK01156 chromosome segregation protein; Provisional
Probab=76.08 E-value=1.2e+02 Score=32.64 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=5.4
Q ss_pred HHHHhhhhHHHHHH
Q 040671 183 ALHLEVGKLGIILQ 196 (358)
Q Consensus 183 Al~~El~~leiiLq 196 (358)
.+..++.+++.-+.
T Consensus 367 ~l~~~l~~~~~~~~ 380 (895)
T PRK01156 367 SYLKSIESLKKKIE 380 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344443333333
No 86
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.68 E-value=65 Score=34.88 Aligned_cols=108 Identities=21% Similarity=0.247 Sum_probs=53.7
Q ss_pred hhhhHHHHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhh
Q 040671 143 IEKEAFSIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKEN 222 (358)
Q Consensus 143 IekEa~svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe~ 222 (358)
+|-|.-++++-.|..+.+|.+|+ +.+.| |++.-.|++++..+|..+...+.+.+--+-+..-+-...|.++..-=-.
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~-iS~~d--ve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQG-ISGED--VERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777776663 22222 3444455555555555555555555444444444444445444433333
Q ss_pred cccccCccccchhHHhHhhh-hhcC--CCCCCCCCCCcCCCCc
Q 040671 223 CNDIGTVNEDTRWLDRVKDA-NYNG--GERSPSKASSLTAPEN 262 (358)
Q Consensus 223 ~Ddvg~~~e~t~~~d~v~e~-~qn~--ge~sp~kassm~~~EN 262 (358)
++.. .++++=. ..|+ -+..|.-|+.+++.=+
T Consensus 383 ~~~l---------~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k 416 (581)
T KOG0995|consen 383 LNSL---------IRRIKLGIAENSKNLERNPERAATNGVDLK 416 (581)
T ss_pred HHHH---------HHHHHHHHHHHhccCCcCCccCccccccch
Confidence 3221 1222221 2222 2567777777776633
No 87
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.56 E-value=51 Score=38.07 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhcc-----
Q 040671 9 FKFQLQALIAETRHLKEKENSAT-----EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQN----- 78 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sar-----eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Len----- 78 (358)
++-.|++..++.-.|.+|=+.+- +.|+..+=+.++-||.+. .++---+.++-..-..+||.+|.+..+
T Consensus 730 i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~--~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~ 807 (1141)
T KOG0018|consen 730 IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL--QQEFAKKRLEFENQKAKLENQLDFEKQKDTQR 807 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhheecccHHH
Confidence 33344444444444444433222 333333333344443333 333334445555566788888877655
Q ss_pred chHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhccc-c
Q 040671 79 DNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDN-V 157 (358)
Q Consensus 79 en~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~-v 157 (358)
..+.+++....+...|+++.+-+++..+..-+. -+|+. +....|+-.+.|+..+|.++.. |
T Consensus 808 ~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-----------------k~k~~~~~~~~e~~e~~k~~~~~~ 869 (1141)
T KOG0018|consen 808 RVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-----------------KNKSKFEKKEDEINEVKKILRRLV 869 (1141)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888899999999888777766544 44442 2267888899999888877643 2
Q ss_pred cchhhhhhhhhhhhHHHHHhhhhHHHHH
Q 040671 158 ECVPYLQKTLSAKDVVIQNLISEKEALH 185 (358)
Q Consensus 158 q~lv~LqKsllvKD~~I~~L~sekqAl~ 185 (358)
..+-.|.+-+...---|+++.++.+.++
T Consensus 870 ~~~tkl~~~i~~~es~ie~~~~er~~lL 897 (1141)
T KOG0018|consen 870 KELTKLDKEITSIESKIERKESERHNLL 897 (1141)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 2233455555555555666776666654
No 88
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.40 E-value=6.2 Score=41.28 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 40 KQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
-|..+-++..+++..|+.|+.-..--++.+|+||+-|+.||..|+...+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777666654444456778888888877777776663
No 89
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=75.37 E-value=11 Score=33.39 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhhhhhHH----------HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHH
Q 040671 14 QALIAETRHLKEKENSATE----------EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALL 83 (358)
Q Consensus 14 qaLisEvR~LRerE~sare----------E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~L 83 (358)
.++|+|+|.|-+=.+.++. -+..-+|-++..=..|.--+.+|++|+-..|-..-.|=.++..+...|..|
T Consensus 48 ~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 48 EAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3688999988876666552 233344555555556666677788888777777777777777777777777
Q ss_pred HHh
Q 040671 84 ENK 86 (358)
Q Consensus 84 Ekn 86 (358)
|++
T Consensus 128 ekr 130 (131)
T PF04859_consen 128 EKR 130 (131)
T ss_pred hcc
Confidence 765
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=74.31 E-value=1.2e+02 Score=32.01 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 040671 191 LGIILQRIQD 200 (358)
Q Consensus 191 leiiLqrfQd 200 (358)
+...++.+++
T Consensus 357 l~~~~~~l~~ 366 (880)
T PRK03918 357 LEERHELYEE 366 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 91
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=73.54 E-value=5.6 Score=40.00 Aligned_cols=48 Identities=31% Similarity=0.416 Sum_probs=38.4
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
.||+| |+.--.+++|-|||=-.-||||||.-+-|||.-|-|-+.++.|
T Consensus 291 KRevR-LmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 291 KREVR-LMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHH-HHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHH
Confidence 34444 5555567788899988899999999999999999887777665
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.11 E-value=1.3e+02 Score=34.37 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=23.1
Q ss_pred ccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhh
Q 040671 155 DNVECVPYLQKTLSAKDVVIQNLISEKEALHLEV 188 (358)
Q Consensus 155 d~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El 188 (358)
+..++.+.|.+.+..||.|+..|.-...++-.|.
T Consensus 525 ~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 525 ETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888899999999776655444444443
No 93
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.90 E-value=6.7 Score=33.21 Aligned_cols=78 Identities=31% Similarity=0.376 Sum_probs=45.6
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLE 84 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE 84 (358)
.|++|.-|+..|..++..|+. .++..- .|-..|+-|.....+.+.+++. +
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~-----------~~~~l~-------EEN~~L~~EN~~Lr~~l~~~~~------------~ 58 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKK-----------QLQELL-------EENARLRIENEHLRERLEELEQ------------E 58 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHhc------------c
Confidence 467788888888888888882 122111 1223344443333333333332 2
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 040671 85 NKQKELKETINRLLQYRENFLSAYEEST 112 (358)
Q Consensus 85 kn~keLK~ti~~LLQSRE~Fi~~Ye~st 112 (358)
...+.-+.+...+..+|.+..+-|++++
T Consensus 59 ~~~~~~~~~~~~~~~g~~NL~~LY~EGF 86 (107)
T PF06156_consen 59 EEEKEEKKTKKKLGEGRDNLARLYQEGF 86 (107)
T ss_pred ccccccccccccccchHHHHHHHHhcCe
Confidence 2333445555667889999999999875
No 94
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.88 E-value=19 Score=30.53 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=29.9
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKE 54 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~E 54 (358)
.|++++-++..+-.++..|+..-.+|...+..+-..|...+..+.+++.+
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666665555555555554444443
No 95
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.57 E-value=27 Score=37.08 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=28.3
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhc
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQDAIATM 205 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m 205 (358)
+-|+.||-||=.+++|=..++.-||.+|+++++.
T Consensus 369 ~niEeLIedKY~viLEKnd~~k~lqnLqe~la~t 402 (527)
T PF15066_consen 369 ENIEELIEDKYRVILEKNDIEKTLQNLQEALANT 402 (527)
T ss_pred HHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4478888888888888888888888888888765
No 96
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.48 E-value=1.6e+02 Score=32.09 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=62.2
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
.+|.-+++.+..++-+|..--+++-+.+. .+-+-..+++-.+.+.+.||.. .+|+..-++-|.--+..++++
T Consensus 224 ~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D-------~nK~~~y~~~~~~k~~~~~~~ 295 (581)
T KOG0995|consen 224 HRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDD-------VNKFQAYVSQMKSKKQHMEKK 295 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhH-------HHHHHHHHHHHHhhhHHHHHH
Confidence 35555666777788888755444444443 4444444554444444445444 467777777777777777777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcc
Q 040671 87 QKELKETINRLLQYRENFLSAYEESTCDMKRAIETRD 123 (358)
Q Consensus 87 ~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~d 123 (358)
.+.||..|... |.=++..+.-.-+|+-.|+..+
T Consensus 296 l~~l~~Eie~k----EeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 296 LEMLKSEIEEK----EEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC
Confidence 77777776653 3333344444455666666553
No 97
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.40 E-value=14 Score=27.65 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 65 LCQKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 65 ~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
....||.+|..|+.+|..|......|+..+..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888777777777777664
No 98
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.40 E-value=26 Score=27.47 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=44.1
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
-.|-.+.++.||-....+...+|++++--+..|..|+...+.|+..|+. ++||
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee-~r~~ 61 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE-LRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 3566778888888888899999999999999999999999999999987 5554
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.30 E-value=1.4e+02 Score=31.26 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh---HHHHHHHhhhhh
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR---ENFLSAYEESTC 113 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR---E~Fi~~Ye~stc 113 (358)
-+-++...=.+...+.+.|+++|++.+.....++..+.-.++++..++++..++..+++.|-.-+ ..|+..|=.+.+
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444456677788888888888888888888888888888889999888888888887544 345555555544
Q ss_pred hh
Q 040671 114 DM 115 (358)
Q Consensus 114 em 115 (358)
-|
T Consensus 126 r~ 127 (420)
T COG4942 126 RS 127 (420)
T ss_pred hc
Confidence 44
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.55 E-value=1.2e+02 Score=33.19 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhh
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKV 73 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kI 73 (358)
.+...|++.||.|+...+|.++.||..+
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666666555
No 101
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.28 E-value=83 Score=28.33 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=25.6
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
....+.++.++....+-+..|..+|.-+..++....+...+++..+
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666555555555555555555443
No 102
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.10 E-value=1.1e+02 Score=29.84 Aligned_cols=120 Identities=22% Similarity=0.304 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
+.-++..++.|+|.+- .-....+..-....++...+++|+..+..++.|||.=-.-||..|-.+..
T Consensus 27 L~kk~~ell~e~k~~~-----------k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lke--- 92 (309)
T PF09728_consen 27 LCKKYAELLEEMKRLQ-----------KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKE--- 92 (309)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4455666777777664 12233444555667788889999999999999999998889988877763
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchh-------hHHHHHhhhhhhhhhhh
Q 040671 89 ELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRK-------LTVLHEKINSHLTLFDS 142 (358)
Q Consensus 89 eLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~-------l~VlsEKLnshl~LFdS 142 (358)
+.+..+..--+.|.....+|+.+--++.-.|+..+.. -..|.+||-+...=|+.
T Consensus 93 E~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 93 ESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666778888888888887777777766532 34556676666655553
No 103
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.52 E-value=1.5e+02 Score=35.02 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=101.5
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 8 KFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
+.....+.+-+|+-+|-+.+...+.++..---+.++.-+..+.+...++.+++--..-......++...|-|...|.+.+
T Consensus 437 ~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~ 516 (1293)
T KOG0996|consen 437 KARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH 516 (1293)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666665555666666666666666666655544444444444444444443333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhHh---hhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhh-h
Q 040671 88 KELKETINRLLQYRENFLSAYEESTCDMKR---AIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPY-L 163 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~~Ye~stcemk~---sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~-L 163 (358)
.. -++.|++.--.+.. +++-+.--+.-+-++|++--.=|..+++++...+....+.+..+. +
T Consensus 517 ~~--------------~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~ 582 (1293)
T KOG0996|consen 517 ET--------------GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKL 582 (1293)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 32 22222222211111 111111133445566777667777888888887777776655541 1
Q ss_pred -h-----h----hhhhhhHHHHHhhhhHH-----HHHHhhhhHHHHHHHHHHHHHhcC
Q 040671 164 -Q-----K----TLSAKDVVIQNLISEKE-----ALHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 164 -q-----K----sllvKD~~I~~L~sekq-----Al~~El~~leiiLqrfQd~~s~m~ 206 (358)
| | +..-+-.++..|+-.|+ +.|+=||.|..|=-||--+|+.-+
T Consensus 583 rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac 640 (1293)
T KOG0996|consen 583 RQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTAC 640 (1293)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhc
Confidence 1 1 22234456667775444 568888889988888888887643
No 104
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=68.51 E-value=72 Score=26.98 Aligned_cols=108 Identities=17% Similarity=0.232 Sum_probs=57.1
Q ss_pred cccchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhh
Q 040671 4 LRLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRN-------EEEYSRNLKELQSELASTNELCQKLERKVSYL 76 (358)
Q Consensus 4 l~lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~-------EEe~~Re~~ELqaElas~~E~~qkLE~kIk~L 76 (358)
++....---|-.+..|||.|=++=..+..++...+...... =+.....+.+...-+....+.++.+...+..+
T Consensus 68 araGe~G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i 147 (213)
T PF00015_consen 68 ARAGEAGRGFAVVADEIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEI 147 (213)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHH
Confidence 33444444566777888888877777777776666655544 22333333333333344444455555555544
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 040671 77 QNDNALLENKQKELKETINRLLQYRENFLSAYEES 111 (358)
Q Consensus 77 enen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~s 111 (358)
......+.....++...++.+.++-..+-...+..
T Consensus 148 ~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 182 (213)
T PF00015_consen 148 SDSIEEISESAEEQSESIEQINESIEEISEISEQI 182 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444444444433
No 105
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=68.25 E-value=16 Score=35.18 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=10.7
Q ss_pred HHhhhhhhhhHHHHHHHHH
Q 040671 21 RHLKEKENSATEEIHLLVQ 39 (358)
Q Consensus 21 R~LRerE~sareE~~~~iQ 39 (358)
+.||++...++.|++.+..
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3455555555566665555
No 106
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.95 E-value=81 Score=35.81 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHH---HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKE---LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAY 108 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~E---LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Y 108 (358)
.|+..+--+.-+.|+..+|..++ .+-=.-....-...||..++-+|.|...|-+..+..+.....|-+-|
T Consensus 474 ~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer------- 546 (913)
T KOG0244|consen 474 GELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEER------- 546 (913)
T ss_pred HHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHH-------
Confidence 45555555566666666665542 21111111222334566666666666666666666666444444443
Q ss_pred hhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh----hh--------hhhhhhhhH---H
Q 040671 109 EESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP----YL--------QKTLSAKDV---V 173 (358)
Q Consensus 109 e~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv----~L--------qKsllvKD~---~ 173 (358)
...|++=-++++.+--|++.+..||+.-.++...++.+.+.++++= .| .|+..-||. .
T Consensus 547 -------~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke 619 (913)
T KOG0244|consen 547 -------VQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKE 619 (913)
T ss_pred -------HHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455566679999999999999999999999999999999888874 11 133333433 3
Q ss_pred HHHhhhhHHHHHHhhhhHHH
Q 040671 174 IQNLISEKEALHLEVGKLGI 193 (358)
Q Consensus 174 I~~L~sekqAl~~El~~lei 193 (358)
+.-|.+.-.-+..|+..++.
T Consensus 620 ~~qlk~~~rk~~~~~~~~~~ 639 (913)
T KOG0244|consen 620 WNQLKGQERKSEGEHPKLEV 639 (913)
T ss_pred HHHHhccchhhccchhHHHH
Confidence 55566666666677777664
No 107
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.84 E-value=27 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIH 35 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~ 35 (358)
.|+-+++.++..++++-..+..+..
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888887766555554443
No 108
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=67.71 E-value=34 Score=32.45 Aligned_cols=71 Identities=28% Similarity=0.301 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHH---h--------hhhhhccc
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLE---R--------KVSYLQND 79 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE---~--------kIk~Lene 79 (358)
.|||..+.|+|.|| ..-||.. .+-+|||.-.-+-||.+||=. | ..+-|++|
T Consensus 48 rrlQ~hl~EIR~LK-----------e~NqkLq-------edNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~e 109 (195)
T PF10226_consen 48 RRLQQHLNEIRGLK-----------EVNQKLQ-------EDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQE 109 (195)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHH-------HHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHH
Confidence 46777777777777 2333333 456777777778888777533 2 15678888
Q ss_pred hHHHHHhHHHHHHHHHHHHH
Q 040671 80 NALLENKQKELKETINRLLQ 99 (358)
Q Consensus 80 n~~LEkn~keLK~ti~~LLQ 99 (358)
-+.-.+|.++|....+.|+.
T Consensus 110 V~~Y~~KL~eLE~kq~~L~r 129 (195)
T PF10226_consen 110 VAQYQQKLKELEDKQEELIR 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777764
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.67 E-value=94 Score=27.97 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=24.4
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHHH----HHHHHHHHHhhHHHHHHhHHHHHHHhhhcH
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATEE----IHLLVQKQKRNEEEYSRNLKELQSELASTN 63 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sareE----~~~~iQk~K~~EEe~~Re~~ELqaElas~~ 63 (358)
..++..++.+-.+...|+.+=..+.+. ....++..+..-+..+.++..|+.++....
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~ 83 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLR 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443333331 222333333333344444444444444333
No 110
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=67.60 E-value=1.9e+02 Score=31.56 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=22.7
Q ss_pred hhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 161 PYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 161 v~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
..+++.+...+..+..+.-..+....++..+...+.+++..+.
T Consensus 371 ~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (908)
T COG0419 371 EELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE 413 (908)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555566666666666555555554443
No 111
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.98 E-value=1.8 Score=45.43 Aligned_cols=112 Identities=29% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcch----------hhHHHHHhhhhhhhhhhhhhhhHHHHh
Q 040671 82 LLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDR----------KLTVLHEKINSHLTLFDSIEKEAFSIK 151 (358)
Q Consensus 82 ~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr----------~l~VlsEKLnshl~LFdSIekEa~svK 151 (358)
.||+..+.+...+..|.+..++ +..+++-.-.|+..++.-+. +...|-.++++.-.+..+++-+ +.
T Consensus 261 ~LE~en~~l~~Elk~Lr~~~~n-~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~---~~ 336 (722)
T PF05557_consen 261 ELEKENRRLREELKHLRQSQEN-VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLE---FD 336 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CC
Confidence 3444444455555555555554 45555555566655554332 1223344455544444444332 22
Q ss_pred hhcccccchhh--------------hhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHH
Q 040671 152 QVVDNVECVPY--------------LQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQR 197 (358)
Q Consensus 152 qvld~vq~lv~--------------LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqr 197 (358)
.|-+=++.|+. ++-.+..++..|..|..++..+..++..++..+..
T Consensus 337 sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~ 396 (722)
T PF05557_consen 337 SPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEA 396 (722)
T ss_dssp ------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344442 22344444555666666655555555555544433
No 112
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=66.83 E-value=55 Score=37.25 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHh---hhhhhccchHHHHH
Q 040671 11 FQLQALIAETRHLKEKENSATE--EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLER---KVSYLQNDNALLEN 85 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sare--E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~---kIk~Lenen~~LEk 85 (358)
-||-.|=+|+|.+|.+=+..+. +++...|-||+-|++..+..-+ ....-.|..-+||. -..-.+-+..++--
T Consensus 219 ~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k~Leqel~~~~~e---~~~fP~DGvlrlEk~~ahL~~~ea~i~~~~v 295 (984)
T COG4717 219 ARLAELRSELRADRDHIRALRDAVELWPRLQEWKQLEQELTRRREE---LATFPRDGVLRLEKREAHLQKTEAEIDALLV 295 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccchhh---hccCCchhHHHHHHHHHhhhhhhhhhHHHHH
Confidence 4666777777777766655553 6778889999888877762221 12223334444443 33334445555555
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhH
Q 040671 86 KQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEA 147 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa 147 (358)
+-.++|+.-..|+.-+|++|.+.. ....+++-+..+=+.|...|..|+..+
T Consensus 296 rlae~~d~~~~LiP~ke~vl~~~~-----------~l~q~~s~i~~~~~E~te~~~~i~~~~ 346 (984)
T COG4717 296 RLAELKDLASQLIPAKEAVLQALV-----------RLHQQLSEIKASAFELTETLAGIEADL 346 (984)
T ss_pred HHHhhhHHHHhccchHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 669999999999999999998877 456677788888889999998888776
No 113
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.40 E-value=70 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=26.2
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..+++...|+.++.+++.+...++++.+.+...|..+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777666666554
No 114
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.35 E-value=2.2e+02 Score=31.64 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=42.7
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHH-------hhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 36 LLVQKQKRNEEEYSRNLKELQSE-------LASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 36 ~~iQk~K~~EEe~~Re~~ELqaE-------las~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
.++|---.+|+.|-+++-+|++| |+...+-..+|+...+-+-..|+.+|..-.-||..|+.+
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 45666667777777777666554 455566677788888877777777777766666666553
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=66.21 E-value=60 Score=34.76 Aligned_cols=72 Identities=24% Similarity=0.363 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhh------------HHHHHHhHHHHH--------------HHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 32 EEIHLLVQKQKRN------------EEEYSRNLKELQ--------------SELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 32 eE~~~~iQk~K~~------------EEe~~Re~~ELq--------------aElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
-||+.+|+..+.- |--|.+++++++ -||.......--|=.|++-||.-|..|++
T Consensus 245 ~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~ 324 (546)
T KOG0977|consen 245 NELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEK 324 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHH
Confidence 5777777766544 444667788887 46666666666677889999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q 040671 86 KQKELKETINRLLQYREN 103 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~ 103 (358)
....|+-++..-..+=|.
T Consensus 325 ~I~dL~~ql~e~~r~~e~ 342 (546)
T KOG0977|consen 325 RIEDLEYQLDEDQRSFEQ 342 (546)
T ss_pred HHHHHHhhhhhhhhhhhh
Confidence 999999888776655433
No 116
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.52 E-value=1.2e+02 Score=28.24 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhcc-----chHHHH
Q 040671 10 KFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQN-----DNALLE 84 (358)
Q Consensus 10 klqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Len-----en~~LE 84 (358)
.-.+..|..++-.|.++...+.. .++++...-+.-....++|...|.......+-|-.++..+-. .+.-+.
T Consensus 51 e~~l~~L~~d~~~L~~k~~~~~~----~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 51 EKELESLEQDVENLQEKATKVSR----KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 34456666677777766555443 345666666667777888888888888778888788877766 677788
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcc
Q 040671 85 NKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRD 123 (358)
Q Consensus 85 kn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~d 123 (358)
+..++-+.-|+. +++|. |......++|+++-.-.+-+
T Consensus 127 ~~l~ea~~mL~e-mr~r~-f~~~~~~Ae~El~~A~~LL~ 163 (264)
T PF06008_consen 127 RALAEAQRMLEE-MRKRD-FTPQRQNAEDELKEAEDLLS 163 (264)
T ss_pred HHHHHHHHHHHH-HHhcc-chhHHHHHHHHHHHHHHHHH
Confidence 888887776665 67884 99999999999986555433
No 117
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=64.84 E-value=58 Score=34.92 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=95.7
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
+|=-|+...|.. -||.|++--+-.-.+-|.|.+.==.++..+|++= .+-|. .|.+-.-+-+||.
T Consensus 198 ~~lsL~f~~D~~-TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l--------~~lc~-------~d~e~~e~~~kl~ 261 (538)
T PF05781_consen 198 LRLSLGFKCDRF-TLEKRLKLEERSRDLAEENLKKEIENCLKLLESL--------APLCW-------EDNESREIIQKLQ 261 (538)
T ss_pred HHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccch-------hhHHHHHHHHHHH
Confidence 444577777765 5888888888888888877665556666666652 22221 2334444567888
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHH
Q 040671 135 SHLTLFDSIEKEAFSIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQ 196 (358)
Q Consensus 135 shl~LFdSIekEa~svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLq 196 (358)
.++.+...--.=|++...++|-|++=--+-|.+.|=+..+++|-.--..-|-||.-++.+|.
T Consensus 262 ~~l~~l~~~~~rvss~AE~lGAv~QE~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~ 323 (538)
T PF05781_consen 262 KSLDVLHQCATRVSSRAEMLGAVHQESRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLL 323 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888899999999999998888899999999999999988888999988887653
No 118
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.97 E-value=44 Score=26.65 Aligned_cols=51 Identities=25% Similarity=0.334 Sum_probs=22.8
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENF 104 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~F 104 (358)
.|.+.|..+=|....|..+|.-|+.+|..|...-.+|+...+.|=+-|++|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433
No 119
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.80 E-value=82 Score=25.92 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=28.7
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..+|+...|+.++.+++.....|+++.+.|..+|..+
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888777777654
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.79 E-value=17 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
+..+++++++++++......++|.++|..|+++...+|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 3445666666777666677777777777777765555543
No 121
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.55 E-value=20 Score=29.84 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=32.6
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhh--ccchHHHHHhHHHHHHHHHHH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYL--QNDNALLENKQKELKETINRL 97 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~L--enen~~LEkn~keLK~ti~~L 97 (358)
++..|+..+...+.-.++||.++..| ..|...|+....+++|.|+.+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 34456666666667777777777777 777777777777777776654
No 122
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.52 E-value=64 Score=31.45 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
.++...+++.++.|++...++.+|+.|-...+..+..||....-++.+-...=+..+.++..+..+.+.|.+.-..|.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777777777777777777777776666666666666666666666666666666655555
No 123
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=63.31 E-value=17 Score=28.71 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=39.4
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
++||..|.-|+|++..+..+..-....++.|-+-|+.|+....+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999988775
No 124
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.19 E-value=1.4e+02 Score=28.21 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=11.4
Q ss_pred chhhhHHHHHHHHHHHhhh
Q 040671 7 SKFKFQLQALIAETRHLKE 25 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRe 25 (358)
+..+.++..|-.++..|+.
T Consensus 77 ~~~~~~l~~l~~~~~~l~a 95 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEA 95 (423)
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 4455566666666666553
No 125
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.16 E-value=36 Score=33.58 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 31 TEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 31 reE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
++||+.-.|..-...++...++.+|++++.+.+|-+.+| +-+|++||..-+-|-+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l-------e~E~s~LeE~~~~l~~ 191 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL-------EVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhchh
Confidence 456666555444445667778888888887766655554 4555555555444433
No 126
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=62.95 E-value=10 Score=31.48 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.9
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
.+.+|++|+..+.+-++..+.+++.|+|....|++
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999887
No 127
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.95 E-value=2.5e+02 Score=32.27 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHH-------HHHHhhHHH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETIN-------RLLQYRENF 104 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~-------~LLQSRE~F 104 (358)
|++-.-+|+.|.---+++-++..|+...-+-.-....|+.+|....-+-++|+++...||.++. .++|-+|+|
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~ 732 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEAS 732 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhc
Confidence 5666677787777777777777777776666677778888888888888888888888888877 456656655
No 128
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.26 E-value=53 Score=28.88 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
-||..+-+.++.-|..=.+-..-+...+..+.+.-+.-+.++-+++..+....+-...+...|.-|+.....+|.||
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46666666666665332222344555556666666666677777777777666666666666666666666666554
No 129
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.68 E-value=2.9e+02 Score=31.52 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=60.6
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhh-hhccchHHHHHhH---HHHHHHHHHHHH
Q 040671 24 KEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVS-YLQNDNALLENKQ---KELKETINRLLQ 99 (358)
Q Consensus 24 RerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk-~Lenen~~LEkn~---keLK~ti~~LLQ 99 (358)
+.+-...+.+...+...|++.-.++..++..++++++.-+..+..++.+-. |-..+.+.+.... .+++..++.+-.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~ 366 (1201)
T PF12128_consen 287 KEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE 366 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344446777788888888888899999999999999988888876544 4444566555443 355666666666
Q ss_pred hhHHHHHHHhhhh
Q 040671 100 YRENFLSAYEEST 112 (358)
Q Consensus 100 SRE~Fi~~Ye~st 112 (358)
....+...|.+-.
T Consensus 367 ~~~~Lt~~~~di~ 379 (1201)
T PF12128_consen 367 QLDLLTSKHQDIE 379 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655533
No 130
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.98 E-value=3.5e+02 Score=32.26 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=29.3
Q ss_pred chhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhh--hhhhhhhhhHHHHHhhhhHHHHHHhhhhHHH
Q 040671 123 DRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPY--LQKTLSAKDVVIQNLISEKEALHLEVGKLGI 193 (358)
Q Consensus 123 dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~--LqKsllvKD~~I~~L~sekqAl~~El~~lei 193 (358)
..++.-+.+|++.--.--+..+++...+-...|.|..-.- --+.++-.=.-...|.---+++...++-|+.
T Consensus 455 e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444444333334444454555555555444431 1112222212222333344555555555555
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.67 E-value=2.6e+02 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 174 IQNLISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
+.....+.+.+..++..+..++..++.+-..++.-
T Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (908)
T COG0419 721 LESRKAELEELKKELEKLEKALELLEELREKLGKA 755 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55566677777777777777777777766666655
No 132
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.12 E-value=30 Score=35.63 Aligned_cols=98 Identities=29% Similarity=0.268 Sum_probs=60.3
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhh---hcHHHHHHH----Hhhhhhhcc
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELA---STNELCQKL----ERKVSYLQN 78 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaEla---s~~E~~qkL----E~kIk~Len 78 (358)
|.|-|-.-|-|=+=+|+++|+-......+....|--+++||+-..=-|||-..+| .-++-.|.= -+-|+-=|-
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~ 201 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQA 201 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 4455556666777788999888888888888988888888865433333322222 111111100 011222234
Q ss_pred chHHHHHhHHHHHHHHHHHHHhhHH
Q 040671 79 DNALLENKQKELKETINRLLQYREN 103 (358)
Q Consensus 79 en~~LEkn~keLK~ti~~LLQSRE~ 103 (358)
-.+.||.++.+|--.|.+|||--..
T Consensus 202 yI~~LEsKVqDLm~EirnLLQle~~ 226 (401)
T PF06785_consen 202 YIGKLESKVQDLMYEIRNLLQLESD 226 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567888888888889999986543
No 133
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.39 E-value=22 Score=26.35 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
.++++.+|+.+++....-.++|+..|+.|.++-+-+|+-
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445566666666666666666666666665555555543
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.37 E-value=1.2e+02 Score=26.49 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=11.5
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLE 84 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LE 84 (358)
++.+.+...++-.-++|..|..|+.-|.+||
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE 48 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLE 48 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 135
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.26 E-value=2e+02 Score=28.93 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHH---HHHhHHHHHHHh---hhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 14 QALIAETRHLKEKENSATEEIHLLVQKQKRNEEE---YSRNLKELQSEL---ASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 14 qaLisEvR~LRerE~sareE~~~~iQk~K~~EEe---~~Re~~ELqaEl---as~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
.+|+.-++..|++-++...|+..+-||..++..| .|..+...|..- .++....++ |.-|..| +.+..+-
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~er-e~lV~qL----Ek~~~q~ 142 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHER-EDLVEQL----EKLREQI 142 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHH-HHHHHHH----HHHHHHH
Confidence 4566667777788888888888888888777777 555565555543 334422111 2223333 3344444
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 040671 88 KELKETINRLLQYRENFLS 106 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~ 106 (358)
..|...++++|+-++-++.
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555665555554
No 136
>PLN03188 kinesin-12 family protein; Provisional
Probab=58.70 E-value=3.8e+02 Score=31.95 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhh----------------------------------------hhhhHHHHHHHHHHHHhhHHHHHHhHHH
Q 040671 15 ALIAETRHLKEK----------------------------------------ENSATEEIHLLVQKQKRNEEEYSRNLKE 54 (358)
Q Consensus 15 aLisEvR~LRer----------------------------------------E~sareE~~~~iQk~K~~EEe~~Re~~E 54 (358)
.|+.|+.+||.+ +.+.-.++..--++|-++|-.|.-=+.|
T Consensus 990 vll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wisltee 1069 (1320)
T PLN03188 990 VLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEE 1069 (1320)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHH
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
||.|+-+..-+-.| |+-|...=.+=-.||++.|+.-.+---.||++|-+ |.||-|
T Consensus 1070 lr~eles~r~l~Ek-------l~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~------------------l~ek~~ 1124 (1320)
T PLN03188 1070 LRTELDASRALAEK-------QKHELDTEKRCAEELKEAMQMAMEGHARMLEQYAD------------------LEEKHI 1124 (1320)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccchh-----------hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 135 SHLTLFDSIEKEAFSIKQVVDNVECVP-----------YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 135 shl~LFdSIekEa~svKqvld~vq~lv-----------~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
.-|..-.-|-.=+.-||.......-== +|---=--|..--..|..++..|..-|..-+-|+|--=+...
T Consensus 1125 ~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellv 1204 (1320)
T PLN03188 1125 QLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLV 1204 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred hcChhh
Q 040671 204 TMNQED 209 (358)
Q Consensus 204 ~m~~E~ 209 (358)
.+.+..
T Consensus 1205 rl~eae 1210 (1320)
T PLN03188 1205 RLKEAE 1210 (1320)
T ss_pred HHHHHH
No 137
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=58.69 E-value=2.9e+02 Score=30.65 Aligned_cols=162 Identities=21% Similarity=0.329 Sum_probs=85.8
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhh-------hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHH-H---H
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELA-------STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYREN-F---L 105 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaEla-------s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~-F---i 105 (358)
++|.-...|+.+..++.+|++|+- -...-..+|-.....|--+++.+|..-+.|+.-|+.+ -.||+ . .
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~-K~rE~rll~dy 99 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY-KFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence 444444555555555555555543 3334445555556666666666666666666665543 23332 2 2
Q ss_pred HHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHH
Q 040671 106 SAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEAL 184 (358)
Q Consensus 106 ~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl 184 (358)
...|+-+|.|+ |++++ |-+.+.=|+++-+|+ |+.-.++..|= -|+-..-.||..=.-|.--.++|
T Consensus 100 selEeENislQ-------Kqvs~----Lk~sQvefE~~Khei---~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl 165 (717)
T PF09730_consen 100 SELEEENISLQ-------KQVSV----LKQSQVEFEGLKHEI---KRLEEEIELLNSQLEEAARLKEIAEKQLEEALESL 165 (717)
T ss_pred HHHHHHHHHHH-------HHHHH----HHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888 67777 566778889888884 44444444442 33334444443333333333344
Q ss_pred HHhhhhHHHHHHHHHHHHHhcChhhhhhhhhh
Q 040671 185 HLEVGKLGIILQRIQDAIATMNQEDNNAFHTA 216 (358)
Q Consensus 185 ~~El~~leiiLqrfQd~~s~m~~E~~k~Fssi 216 (358)
..|= .-+.+|+| +.-.-|+-+++-.|+++
T Consensus 166 ~~ER-eqk~~Lrk--EL~~~~~~~~~~~~~~~ 194 (717)
T PF09730_consen 166 KSER-EQKNALRK--ELDQHLNIESISYLSNL 194 (717)
T ss_pred HHHH-HHHHHHHH--HHHHhcCccccccccch
Confidence 4331 23344444 22333555555445444
No 138
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=58.20 E-value=2.9e+02 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHH---HH-HHHHHhcChhhh
Q 040671 174 IQNLISEKEALHLEVGKLGIILQ---RI-QDAIATMNQEDN 210 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLq---rf-Qd~~s~m~~E~~ 210 (358)
++.|.+..+||...=.-||-=|- || ||.|+-+|+.-+
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akr 629 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKR 629 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666665442 22 677777776544
No 139
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=57.07 E-value=3.8e+02 Score=31.36 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=69.9
Q ss_pred hhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH---HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhh
Q 040671 59 LASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLL---QYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINS 135 (358)
Q Consensus 59 las~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL---QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLns 135 (358)
|...+..+..++..|+-.|+...-+..+.++..+.+..+= -+.|+-|....+-+= .+ .+.|-.
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~-------~~-------d~Ei~~ 341 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVD-------AQ-------DEEIEE 341 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-------hh-------hHHHHH
Confidence 3445555566666666666655555555555544444332 333333333332221 22 222222
Q ss_pred hhhhhhhhhhhHHHHhhhcccccchh--------hhhhhhh-hhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcC
Q 040671 136 HLTLFDSIEKEAFSIKQVVDNVECVP--------YLQKTLS-AKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 136 hl~LFdSIekEa~svKqvld~vq~lv--------~LqKsll-vKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~ 206 (358)
--..++..-.|+..+|.-..+.+.=+ .+.|.+- .+-.....+.++...+..++..|+.-+.++++.++.+.
T Consensus 342 ~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 342 ARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444444443333332222 2222211 11122455666666666666666666666666666666
Q ss_pred hhhhhhhhhhhhhhh
Q 040671 207 QEDNNAFHTALMLKE 221 (358)
Q Consensus 207 ~E~~k~Fssil~~Qe 221 (358)
.+-..+=..+..-++
T Consensus 422 ~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 422 EELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHhHH
Confidence 665555444444443
No 140
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.97 E-value=1.2e+02 Score=25.70 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHh-------------------hhcHHHHHH
Q 040671 8 KFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSEL-------------------ASTNELCQK 68 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaEl-------------------as~~E~~qk 68 (358)
.+.-+||+++.++..|+..=.. .++.. +.=+...++..---.|| ...+|+...
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~-------~~~q~-~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~ 75 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLER-------LLQQK-SQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKE 75 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHH
Confidence 4677899999999988843322 22221 11122222222222222 235678888
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
|+.|+.+++.+...||++...|..++..+=
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877776653
No 141
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.61 E-value=3.2e+02 Score=30.49 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=38.0
Q ss_pred hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhh
Q 040671 162 YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQED 209 (358)
Q Consensus 162 ~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~ 209 (358)
.|+-+|-+|+.-.+.|.+|..+|..++..-...+-+-+..+..+.+|-
T Consensus 326 ~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~ 373 (775)
T PF10174_consen 326 VLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEK 373 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588888888889999999999998888888887777777766653
No 142
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.79 E-value=1.6e+02 Score=26.73 Aligned_cols=83 Identities=27% Similarity=0.365 Sum_probs=51.2
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH----hHHHHHHHhhhcHHHHHHHHhhhhhhccchH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSR----NLKELQSELASTNELCQKLERKVSYLQNDNA 81 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~R----e~~ELqaElas~~E~~qkLE~kIk~Lenen~ 81 (358)
|..+|.++...|.||-.|-.+++.||--+.........--|+-.| ++.++|.+|+.- ..+-+.|...-.
T Consensus 36 L~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~-------re~E~qLr~rRD 108 (159)
T PF05384_consen 36 LEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML-------REREKQLRERRD 108 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 567888999999999999999999997776655544332222222 455566655532 223344444444
Q ss_pred HHHHhHHHHHHHHH
Q 040671 82 LLENKQKELKETIN 95 (358)
Q Consensus 82 ~LEkn~keLK~ti~ 95 (358)
.||...+.|+.+++
T Consensus 109 ~LErrl~~l~~tie 122 (159)
T PF05384_consen 109 ELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 143
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.66 E-value=50 Score=26.50 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=16.9
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
..|=.+++-+-.+...+|...+++...+..+|
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555554
No 144
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=55.40 E-value=1.9e+02 Score=29.32 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHhh
Q 040671 9 FKFQLQALIAETRHLK 24 (358)
Q Consensus 9 fklqLqaLisEvR~LR 24 (358)
+|-.++.+-.|++...
T Consensus 25 ykq~f~~~reEl~EFQ 40 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQ 40 (333)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555544
No 145
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=55.32 E-value=1.3e+02 Score=26.98 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhh
Q 040671 8 KFKFQLQALIAETRHLK 24 (358)
Q Consensus 8 kfklqLqaLisEvR~LR 24 (358)
.+..||..+-.+++.|+
T Consensus 92 el~~~L~~~~~~l~~l~ 108 (194)
T PF08614_consen 92 ELAQQLVELNDELQELE 108 (194)
T ss_dssp -----------------
T ss_pred cccccccccccccchhh
Confidence 34455555555555555
No 146
>PF14182 YgaB: YgaB-like protein
Probab=54.93 E-value=15 Score=30.54 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=32.4
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhh
Q 040671 180 EKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHT 215 (358)
Q Consensus 180 ekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fss 215 (358)
+..+++.||+-|+-.|+.||+.|...+++++.+|.+
T Consensus 41 ~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~sy~~ 76 (79)
T PF14182_consen 41 ELHSIQEEISQMKKELKEIQRVFEKQTEEVIRSYQS 76 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999998864
No 147
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.77 E-value=22 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=34.2
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
..++|..-|++|+.+++.....|++..+.+...|..+..
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999988887643
No 148
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=54.71 E-value=1.5e+02 Score=26.07 Aligned_cols=60 Identities=25% Similarity=0.398 Sum_probs=33.5
Q ss_pred HhHHHHHHHhhhcHHHHHHHH--hhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 50 RNLKELQSELASTNELCQKLE--RKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE--~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
.++.++.+--+...+...+|. +.+++-.+++-.|=++-+++...|+.=.-..+.-|..|+
T Consensus 59 ~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 59 AELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333332 556666666666666666666666666666666666665
No 149
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.69 E-value=2.9e+02 Score=29.29 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 83 LENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 83 LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
+|..+...++.+.-|-++|+.+-..++.
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666666654
No 150
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.77 E-value=3.2e+02 Score=29.58 Aligned_cols=15 Identities=53% Similarity=0.665 Sum_probs=10.0
Q ss_pred HHHhhhhHHHHHHhh
Q 040671 174 IQNLISEKEALHLEV 188 (358)
Q Consensus 174 I~~L~sekqAl~~El 188 (358)
-+.|++++++||.++
T Consensus 246 ~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 246 YQQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777777777653
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.69 E-value=35 Score=29.66 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
+-...|...|.-|+.+...|+...+.|...+.+|..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444545555555555555555555555554443
No 152
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.58 E-value=4e+02 Score=31.06 Aligned_cols=123 Identities=19% Similarity=0.296 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHH-----HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 13 LQALIAETRHLKEKENSATEEIHLLVQKQKRNEE-----EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 13 LqaLisEvR~LRerE~sareE~~~~iQk~K~~EE-----e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
+-.+..|+-.||..=.+||+--...+-+-+-+.+ .....+.+|--+|...++-+..|....-+++.-+..|-+..
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888998888888654443322222222 23345666667777777777777777777777777887777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhh
Q 040671 88 KELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDS 142 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdS 142 (358)
-.+|..+++-.+.=+++-++|....-.|+ ..+ -|++.-.-++..|+|-
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l~----~~e---~ii~~~~~se~~l~~~ 533 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATLK----EEE---EIISQQEKSEEKLVDR 533 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHH
Confidence 77888888777777777777776444444 322 2333333445555554
No 153
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=53.43 E-value=59 Score=28.27 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=39.2
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
+.++.+..=++ +..+|++|++-.+++.+|+..||.|.++=.+.+++..+
T Consensus 32 S~~kpe~~lkE---Ei~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~k 80 (106)
T PF11594_consen 32 SAYKPEQVLKE---EINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQHK 80 (106)
T ss_pred HhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777666544 56778899999999999999999999988766666544
No 154
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.41 E-value=3.7e+02 Score=30.11 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHH
Q 040671 174 IQNLISEKEALHLEVGKLGIILQ 196 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLq 196 (358)
+++||-..++|--|-+-|+-+|-
T Consensus 260 ~~~l~~~l~~~eeEnk~Lke~l~ 282 (769)
T PF05911_consen 260 SEFLTERLQAMEEENKMLKEALA 282 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666654
No 155
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.14 E-value=2.4e+02 Score=27.90 Aligned_cols=140 Identities=19% Similarity=0.298 Sum_probs=82.7
Q ss_pred HhhHHHHHHhHHHHHHHhhhcH----------------HHHHHHHhhhhhhccc-hHHHHHhHHHHHHHHHHHHHhhHHH
Q 040671 42 KRNEEEYSRNLKELQSELASTN----------------ELCQKLERKVSYLQND-NALLENKQKELKETINRLLQYRENF 104 (358)
Q Consensus 42 K~~EEe~~Re~~ELqaElas~~----------------E~~qkLE~kIk~Lene-n~~LEkn~keLK~ti~~LLQSRE~F 104 (358)
-..-++..+++..|-+-|.... +++..|+++|+-|+.. ...++.+.+.|-..|+.|-..|.+
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~- 286 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKE- 286 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 3456777888888888887732 7899999999999653 366677777777777766555532
Q ss_pred HHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhhhhhhhhhhh--HHHHHhhhhHH
Q 040671 105 LSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPYLQKTLSAKD--VVIQNLISEKE 182 (358)
Q Consensus 105 i~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~LqKsllvKD--~~I~~L~sekq 182 (358)
+.. -... ..||+.=..++..++.=+..+-.+|+-.+.|=.|-. .|-+ ..+..|.+.-.
T Consensus 287 -------~~~----~~~~-------e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~--~a~~~~~~l~~le~~q~ 346 (388)
T PF04912_consen 287 -------AKE----DAEQ-------ESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHE--EAAEFSQTLSELESQQS 346 (388)
T ss_pred -------ccc----cccc-------hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 110 0112 245544333333333333444444444443322110 0111 23666777777
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 040671 183 ALHLEVGKLGIILQRIQDAI 202 (358)
Q Consensus 183 Al~~El~~leiiLqrfQd~~ 202 (358)
.|..+|+..+..|.++|..|
T Consensus 347 ~l~~~l~~~~~~L~~ve~~~ 366 (388)
T PF04912_consen 347 DLQSQLKKWEELLNKVEEKF 366 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888774
No 156
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.33 E-value=1.2e+02 Score=33.38 Aligned_cols=91 Identities=14% Similarity=0.302 Sum_probs=43.6
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH------hhHHHHHHHhhhhhhhHhhhhhc
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ------YRENFLSAYEESTCDMKRAIETR 122 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ------SRE~Fi~~Ye~stcemk~sIe~~ 122 (358)
+++......++.......++|+..++.|+-+++.|++....|+..+..+-. -++.-|.+.+.-...|+..++..
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444333333333333211 11222334444455566677777
Q ss_pred chhhHHHHHhhhhhhhh
Q 040671 123 DRKLTVLHEKINSHLTL 139 (358)
Q Consensus 123 dr~l~VlsEKLnshl~L 139 (358)
.+++-.|-.||+.-..|
T Consensus 494 ~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 494 KKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766543
No 157
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.82 E-value=2.1e+02 Score=28.73 Aligned_cols=88 Identities=27% Similarity=0.301 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHH----------HHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhcc
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEI----------HLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQN 78 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~----------~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Len 78 (358)
....++.|.+|+..||..-+...+++ |.-+-+.-+...+.+.++-++-+++...-.....+-..+.-++|
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~ 235 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34567888888888887777777544 44444556677788888888888888888888888888888888
Q ss_pred chHHHHHhHHHHHHHHHH
Q 040671 79 DNALLENKQKELKETINR 96 (358)
Q Consensus 79 en~~LEkn~keLK~ti~~ 96 (358)
+...+++..+.|.....+
T Consensus 236 elre~~k~ik~l~~~~~~ 253 (294)
T COG1340 236 ELRELEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777665544
No 158
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.73 E-value=1e+02 Score=26.15 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=35.1
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
...++..+|..+-| .++.+|+-|+..-.-|+++.+++..+|+.+|++
T Consensus 68 d~~e~~~~l~~r~E---~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 68 DKTKVEKELKERKE---LLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred cHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555444 455788888888888899999999999998875
No 159
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.47 E-value=2.2e+02 Score=26.94 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=39.3
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh---hHHHHHHHhhh
Q 040671 35 HLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY---RENFLSAYEES 111 (358)
Q Consensus 35 ~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS---RE~Fi~~Ye~s 111 (358)
+.+..+++.+++ +...|........+..++|+....-.+.+...|+.+..++..-+..|-+. |+.=...++.-
T Consensus 36 ~~Leek~k~aee----ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 36 EELEEKLKQAEE----EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 34566677777777778888777777777888888888777777766543 44445555543
Q ss_pred hhhhH
Q 040671 112 TCDMK 116 (358)
Q Consensus 112 tcemk 116 (358)
.-..+
T Consensus 112 l~~ar 116 (246)
T PF00769_consen 112 LEEAR 116 (246)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 160
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.27 E-value=2.7e+02 Score=27.95 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENF 104 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~F 104 (358)
.|+..-+-.|.+.-.+...++++++..+-+-.+-+..+=.+|.-+-+.-..+-.+..+|-.-+..++-.++-|
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7888888889999999999999999999998888888888888887777777666666777777777766655
No 161
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.25 E-value=1.6e+02 Score=26.25 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 53 KELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 53 ~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
..++.++..-...+..++..+.-|.+....|+.+..+++....
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 162
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=50.97 E-value=3.1e+02 Score=28.54 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHH-------HHH---hhHHHHHHhHHHHHHHhhhcHHHHHHH
Q 040671 10 KFQLQALIAETRHLKEKENSATEEIHLLVQ-------KQK---RNEEEYSRNLKELQSELASTNELCQKL 69 (358)
Q Consensus 10 klqLqaLisEvR~LRerE~sareE~~~~iQ-------k~K---~~EEe~~Re~~ELqaElas~~E~~qkL 69 (358)
+.|....++|++..+.-=...|.|+-.++. +-. ..-+...+.+.+|..||...++++...
T Consensus 122 ~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 122 REQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666665555444444444433321 111 122455667777777777777766653
No 163
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=50.74 E-value=1.1e+02 Score=23.23 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhh-HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhc-cchHHHHHhHHHHHHHHHHH
Q 040671 33 EIHLLVQKQKRN-EEEYSRNLKELQSELASTNELCQKLERKVSYLQ-NDNALLENKQKELKETINRL 97 (358)
Q Consensus 33 E~~~~iQk~K~~-EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Le-nen~~LEkn~keLK~ti~~L 97 (358)
++...+.+.+.. .++-.+.+++.+..|.++++.+..+|-.+..+- ++-..+..+.++.|..+..|
T Consensus 7 ~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 7 EIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432 245566678888888889999988888888875 55566666666666666553
No 164
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=50.61 E-value=2.2e+02 Score=26.76 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHH
Q 040671 12 QLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELK 91 (358)
Q Consensus 12 qLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK 91 (358)
+|..|+.+.+.+| +.-.++...+.+.....-.+..+-...-+.....+.-|++|+|...+-.----..+||......
T Consensus 95 ~l~~l~~~~~~~r---K~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~ 171 (237)
T cd07657 95 KLTLLIKDKRKAK---KAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQ 171 (237)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 4566777777777 3444555555555555556666666666666666667777776665443222345667666666
Q ss_pred HHHHHHHHhhHHHHHHHh
Q 040671 92 ETINRLLQYRENFLSAYE 109 (358)
Q Consensus 92 ~ti~~LLQSRE~Fi~~Ye 109 (358)
.....+-.+|+..+....
T Consensus 172 ~~~~k~~~akNeY~l~l~ 189 (237)
T cd07657 172 KACRKLHLCHNDYVLALL 189 (237)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666655554443
No 165
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=50.51 E-value=1.4e+02 Score=24.56 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=33.3
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
+.++|..-|++|++.|+...+.|+++...++..++.+..
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998888877654
No 166
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=50.31 E-value=2.4e+02 Score=29.35 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 040671 45 EEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLS 106 (358)
Q Consensus 45 EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~ 106 (358)
+-.+.|+..+|-.+.+--.-..++||.+=.-..+.-.-+-++.++|-.-+..|-+.||.|+.
T Consensus 119 ~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~ 180 (377)
T KOG2896|consen 119 ESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLE 180 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHh
Confidence 33444444444333444444455555554444455555556666666777888888888875
No 167
>PRK10698 phage shock protein PspA; Provisional
Probab=50.27 E-value=2.2e+02 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
+...+..|+.++........+|...+.-|++....+..+...|+...
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666666666666666666666666555443
No 168
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.07 E-value=71 Score=27.59 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=27.1
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
..+.|...|+...+.+..|+..|..++..++..+.+.++|+.+++.+-.
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555443
No 169
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.95 E-value=1.3e+02 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
+-...++.+|+.+..+..+.... |..+|.+|...+..-+..|.+||..
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~-------L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEE-------LKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33335566666655554444433 4556777777777778888887753
No 170
>smart00338 BRLZ basic region leucin zipper.
Probab=49.81 E-value=36 Score=25.36 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=20.2
Q ss_pred HHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 65 LCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 65 ~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
....||.+|..|+.+|+.|......|...+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666555544
No 171
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.54 E-value=3.3e+02 Score=28.44 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=25.9
Q ss_pred hhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhccccc
Q 040671 119 IETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVE 158 (358)
Q Consensus 119 Ie~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq 158 (358)
|+.=.+.+..+.++++.+..-|+.|..+.-.+..-+..+.
T Consensus 357 L~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 357 LESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333444555677788888888888877777666555443
No 172
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=49.08 E-value=1.9e+02 Score=30.33 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=77.2
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHH-HhhhhhhhHhhhhhcchh
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSA-YEESTCDMKRAIETRDRK 125 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~-Ye~stcemk~sIe~~dr~ 125 (358)
.+..+++.||-+||..+-.... ..++.+.+|..++.-=.+|-.. ...+.-.=.--|++..++
T Consensus 152 ~~~~el~~lrrdLavlRQ~~~~-----------------~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~k 214 (426)
T smart00806 152 EQRAELKSLQRELAVLRQTHNS-----------------FFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKK 214 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHH
Confidence 4556777777777765544433 4556667777776655555442 333322333345555556
Q ss_pred hHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhh-hhhhhhhhhHHH---HHhhhhHHHHHHhhhhHHHHHHHHHHH
Q 040671 126 LTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPY-LQKTLSAKDVVI---QNLISEKEALHLEVGKLGIILQRIQDA 201 (358)
Q Consensus 126 l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~-LqKsllvKD~~I---~~L~sekqAl~~El~~leiiLqrfQd~ 201 (358)
|+.-|++| =--||+.|++|+ |+ ||.+. .-+--..++...||.....=|+++|+.
T Consensus 215 L~~~Sd~l-----------------ltkVDDLQD~vE~LR-----kDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~ 272 (426)
T smart00806 215 LSEDSDSL-----------------LTKVDDLQDIIEALR-----KDVAQRGVRPSKKQLETVQKELETARKELKKMEEY 272 (426)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHHHH-----HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554 223688888884 44 33331 112233345555555556666666777
Q ss_pred HHhcChhhhhhhhhhhhhhhhccc
Q 040671 202 IATMNQEDNNAFHTALMLKENCND 225 (358)
Q Consensus 202 ~s~m~~E~~k~Fssil~~Qe~~Dd 225 (358)
+..-.+-=+|.+-+ +.+.+|++
T Consensus 273 i~~eKP~WkKiWE~--EL~~VcEE 294 (426)
T smart00806 273 IDIEKPIWKKIWEA--ELDKVCEE 294 (426)
T ss_pred HhhcChHHHHHHHH--HHHHHHHH
Confidence 77766666666654 55667766
No 173
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.07 E-value=2.2e+02 Score=27.50 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhHHHHHHHh-hhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Q 040671 30 ATEEIHLLVQKQKRNEEEYSRNLKELQSEL-ASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAY 108 (358)
Q Consensus 30 areE~~~~iQk~K~~EEe~~Re~~ELqaEl-as~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Y 108 (358)
+.+++.-.+++|.+...+-.-+..++...+ +...+...+|+..|..|+..-.-.-.-+.| |+.|.+||...
T Consensus 18 ~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~E--------l~~R~~~i~~l 89 (235)
T KOG3202|consen 18 LSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFE--------LSRRRRFIDNL 89 (235)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHH--------HHHHHHHHHHH
Confidence 446777888888777665222333333333 467777888888887776554433222233 78999999988
Q ss_pred hhhhhhhHhhhhh
Q 040671 109 EESTCDMKRAIET 121 (358)
Q Consensus 109 e~stcemk~sIe~ 121 (358)
....=.|+-+..+
T Consensus 90 r~q~~~~~~~~~~ 102 (235)
T KOG3202|consen 90 RTQLRQMKSKMAM 102 (235)
T ss_pred HHHHHHHHHHHHh
Confidence 8766666644444
No 174
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=48.70 E-value=44 Score=27.42 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=33.0
Q ss_pred hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcC
Q 040671 162 YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 162 ~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~ 206 (358)
++++++ |.+++.|...+..+...+..|.-.++..++.+..+.
T Consensus 79 ~vE~~~---~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 79 YVEKDA---EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred EEEecH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556654 577888888888888888888888888888777654
No 175
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=48.66 E-value=1.5e+02 Score=25.85 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhh-hhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 040671 34 IHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVS-YLQNDNALLENKQKELKETINRLLQYRENFLSAYEEST 112 (358)
Q Consensus 34 ~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk-~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~st 112 (358)
+.-.++=.....+.. .....-+.++.....+.-. |.-+. -+++....+......+...|+..+.+-..+|.-+.-+.
T Consensus 63 l~~~~~~~~~~~~~l-~~~~~~~~~vd~~~~a~i~-e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~ 140 (204)
T PF04740_consen 63 LQGLILLLEEYQEAL-KFIKDFQSEVDSSSNAIID-EDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSS 140 (204)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHccccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchH
Q ss_pred hhhHhhhhhcchhhHHHHHhhhhh----hhhhhhhhhhHHHHhhhccccc
Q 040671 113 CDMKRAIETRDRKLTVLHEKINSH----LTLFDSIEKEAFSIKQVVDNVE 158 (358)
Q Consensus 113 cemk~sIe~~dr~l~VlsEKLnsh----l~LFdSIekEa~svKqvld~vq 158 (358)
-.+...++.-.+++--.-+||..+ ..+|+.++.-+..|++-+..++
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~ 190 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQALQSGLSQLQ 190 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 176
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=48.18 E-value=2.3e+02 Score=30.01 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=5.5
Q ss_pred HHhhHHHHHHHhh
Q 040671 98 LQYRENFLSAYEE 110 (358)
Q Consensus 98 LQSRE~Fi~~Ye~ 110 (358)
=+.=+.|+..|++
T Consensus 389 ~~~Y~~ll~r~~e 401 (754)
T TIGR01005 389 RQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.16 E-value=2.9e+02 Score=30.34 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=5.8
Q ss_pred HHHhhhhHHHHHH
Q 040671 174 IQNLISEKEALHL 186 (358)
Q Consensus 174 I~~L~sekqAl~~ 186 (358)
|..++.+.+.+..
T Consensus 701 I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 701 IDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.98 E-value=1.9e+02 Score=28.53 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=10.4
Q ss_pred hhHHHHhhhcccccchh
Q 040671 145 KEAFSIKQVVDNVECVP 161 (358)
Q Consensus 145 kEa~svKqvld~vq~lv 161 (358)
+||..+|..++..+.+-
T Consensus 271 ~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 271 KEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666666666655554
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.07 E-value=2.6e+02 Score=26.62 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=25.4
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
+||..+...|..|-++--|.+|-.-.-|.-||+...+.+......+..+
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666655555555555555544444444444444444444
No 180
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=46.80 E-value=3.5e+02 Score=28.01 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=17.5
Q ss_pred hhHHHHHhhhhHHHHHHhhhhHHHHHHHH
Q 040671 170 KDVVIQNLISEKEALHLEVGKLGIILQRI 198 (358)
Q Consensus 170 KD~~I~~L~sekqAl~~El~~leiiLqrf 198 (358)
-+.-++.|..+...+..++..+...|.+.
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666666666666666666655555
No 181
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.17 E-value=2.2e+02 Score=29.79 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=14.1
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
|++|-..|++....|++++++|....+.
T Consensus 85 L~qRee~Lekr~e~Lekre~~Le~ke~~ 112 (514)
T TIGR03319 85 LLQREETLDRKMESLDKKEENLEKKEKE 112 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554444433
No 182
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.14 E-value=2.7e+02 Score=29.17 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=4.9
Q ss_pred HHHHHhhhh
Q 040671 172 VVIQNLISE 180 (358)
Q Consensus 172 ~~I~~L~se 180 (358)
.++++|+.|
T Consensus 262 ~~l~~li~d 270 (514)
T TIGR03319 262 MALEKLIQD 270 (514)
T ss_pred HHHHHHHHc
Confidence 345566655
No 183
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.04 E-value=1.1e+02 Score=25.54 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhhhhhccchHHHHHhHHHHHHH-------HHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 62 TNELCQKLERKVSYLQNDNALLENKQKELKET-------INRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 62 ~~E~~qkLE~kIk~Lenen~~LEkn~keLK~t-------i~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
+-|.+.+||.||.-.=-...+|.-...|||+. ++.+.-+|+.....++ +++. .-.+-.++|+
T Consensus 2 S~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~----------qLk~-E~~~WqerLr 70 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENN----------HLKE-QQNGWQERLQ 70 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----------HHHH-HHHHHHHHHH
Q ss_pred hhhhhhhhh
Q 040671 135 SHLTLFDSI 143 (358)
Q Consensus 135 shl~LFdSI 143 (358)
+-|-.++.|
T Consensus 71 ~LLGkm~~v 79 (79)
T PRK15422 71 ALLGRMEEV 79 (79)
T ss_pred HHHHhhccC
No 184
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=45.71 E-value=4.3e+02 Score=28.67 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHH
Q 040671 8 KFKFQLQALIAETRHLKEKENSAT---EEIHLLVQKQK 42 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sar---eE~~~~iQk~K 42 (358)
.++-+.+.|..+|+.|++...... .++..++++.+
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888876665544 35555555554
No 185
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=45.69 E-value=41 Score=33.40 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=4.0
Q ss_pred Cchhhhhhh
Q 040671 265 SPLCQKHIA 273 (358)
Q Consensus 265 sP~cq~~~~ 273 (358)
.|.+++-++
T Consensus 345 ~p~l~~~~~ 353 (370)
T PF02994_consen 345 RPALQEILK 353 (370)
T ss_dssp -HHHHHHHT
T ss_pred CchHHHHHh
Confidence 455555443
No 186
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.63 E-value=2.4e+02 Score=28.01 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..++.|...+.-++++.+.++...+.|+..++.+
T Consensus 310 ~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 310 PVYQQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666665555555555443
No 187
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.57 E-value=97 Score=31.47 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=19.2
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
++++|+.+|....+.+.+++.++.-++.....|+...
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555544
No 188
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.32 E-value=3.4e+02 Score=27.40 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=41.4
Q ss_pred hhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 125 KLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 125 ~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
-+-++.+||+.+-..+..++--.+. ++=..+| .|++ + -.-+..|-.|.+++..|..-+..=-.-|++=+.
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~-----~ere~lV~qLEk---~-~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFP-----HEREDLVEQLEK---L-REQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccc-----hHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888877777655533222 3333333 2221 0 023555666666666666666665555666666
Q ss_pred hcChh
Q 040671 204 TMNQE 208 (358)
Q Consensus 204 ~m~~E 208 (358)
.+|+|
T Consensus 172 RLN~E 176 (319)
T PF09789_consen 172 RLNHE 176 (319)
T ss_pred HHHHH
Confidence 66655
No 189
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.32 E-value=1.4e+02 Score=23.06 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 040671 12 QLQALIAETRH 22 (358)
Q Consensus 12 qLqaLisEvR~ 22 (358)
.|..++..++.
T Consensus 4 ~L~~~l~~l~~ 14 (127)
T smart00502 4 ALEELLTKLRK 14 (127)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 190
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.02 E-value=58 Score=31.78 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=39.0
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 36 LLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 36 ~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
.--|-||..+....|.. .|+.++-+..+..+.|-++|+-++|...... ..-.++++.++.|
T Consensus 37 ~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~----~~~~t~~~~ie~~ 97 (247)
T COG3879 37 AVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVR----RSVLTDDAALEDR 97 (247)
T ss_pred HHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHhHHHHHHHH
Confidence 44577888888888887 8888887777777666555555544433333 2225666666654
No 191
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=44.99 E-value=71 Score=27.78 Aligned_cols=63 Identities=13% Similarity=0.337 Sum_probs=46.4
Q ss_pred HHHhhhhhhccchHHHHHhHHHH-HHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 68 KLERKVSYLQNDNALLENKQKEL-KETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keL-K~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
.+|=+|+.||-|.+.+-.-|.+. |..+ =-+++.|+++++...+ |-..+.-++.+|+.++-||-
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eL---EkYkqly~eElk~r~S-Ls~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTEL---EKYKQLYLEELKLRKS-LSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHH
Confidence 46777888888887777666666 4443 4578889999887655 36677788888988887764
No 192
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.69 E-value=3.2e+02 Score=26.99 Aligned_cols=89 Identities=25% Similarity=0.317 Sum_probs=68.7
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhH---------HHHHHHHHHHHhhHH------HHHHhHHHHHHHhhhcHHHHHHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSAT---------EEIHLLVQKQKRNEE------EYSRNLKELQSELASTNELCQKL 69 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sar---------eE~~~~iQk~K~~EE------e~~Re~~ELqaElas~~E~~qkL 69 (358)
.|..+.-|+++|..++-.|-++...+. .|+...+++|+..-. +--|-++.|-.+.+..-..+..|
T Consensus 262 ~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~l 341 (388)
T PF04912_consen 262 KLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSEL 341 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999988877766552 688899999988664 34567788888899899999999
Q ss_pred HhhhhhhccchHHHHHhHHHHHHH
Q 040671 70 ERKVSYLQNDNALLENKQKELKET 93 (358)
Q Consensus 70 E~kIk~Lenen~~LEkn~keLK~t 93 (358)
|..+.-|+.+....+.-.+.+..+
T Consensus 342 e~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 342 ESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888887776666655555554
No 193
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.29 E-value=2.4e+02 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhhh
Q 040671 86 KQKELKETINRLLQYRENFLSAYEESTCDM 115 (358)
Q Consensus 86 n~keLK~ti~~LLQSRE~Fi~~Ye~stcem 115 (358)
+.+.|...++.|.+.-..+-.-|+...--|
T Consensus 119 ~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 119 RNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444555555433333
No 194
>PLN02678 seryl-tRNA synthetase
Probab=43.91 E-value=91 Score=32.24 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=20.7
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
..|-.+++-|-.+...||+..++++..|..+|.+
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666666777777777777666543
No 195
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=43.45 E-value=33 Score=24.89 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhcc
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQN 78 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Len 78 (358)
.++|++-||..+|.-+|-+.-||.|-|-|.|
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n 32 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELSN 32 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 4688999999999999999888877766655
No 196
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=43.04 E-value=2.3e+02 Score=30.83 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhhhHHHHhhhccc
Q 040671 134 NSHLTLFDSIEKEAFSIKQVVDN 156 (358)
Q Consensus 134 nshl~LFdSIekEa~svKqvld~ 156 (358)
+.=..+.|+|++||...-.+.++
T Consensus 450 ~~s~~l~~~ie~E~~~f~~~~l~ 472 (632)
T PF14817_consen 450 PQSQELRDCIEREVRAFQAIPLN 472 (632)
T ss_pred HHHHHHHHHHHHHHHhcccccHH
Confidence 44567899999999998877766
No 197
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.80 E-value=24 Score=30.50 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
...++....+.+..-.+.++.||..++.++.++...+++.
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556666677778888899999999998888888883
No 198
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=42.56 E-value=1.3e+02 Score=26.54 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhc
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELAST 62 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~ 62 (358)
+--|+.+|..|+..||+ -++.|.+|--.--.---|++.||.-.++..
T Consensus 6 ~~~q~~~l~~~v~~lRe-------d~r~SEdrsa~SRa~mhrRlDElV~Rv~~l 52 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELRE-------DIRRSEDRSAASRASMHRRLDELVERVTTL 52 (112)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHhHHHHHHHHHHH
Confidence 34588999999998884 233333333333334445566666655543
No 199
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.45 E-value=1.1e+02 Score=33.23 Aligned_cols=122 Identities=23% Similarity=0.246 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhc------cchHHHHHhHHHHHHHHHHHH-------
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQ------NDNALLENKQKELKETINRLL------- 98 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Le------nen~~LEkn~keLK~ti~~LL------- 98 (358)
.++..+-++.+....+...-.++++..+.........|+..-..|. ..+..|-|..-+|||+|...-
T Consensus 248 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~ 327 (670)
T KOG0239|consen 248 QELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLP 327 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCc
Confidence 3333333333333433333334444444444444444444433333 455667777777777775421
Q ss_pred ---HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh
Q 040671 99 ---QYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP 161 (358)
Q Consensus 99 ---QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv 161 (358)
+...+.|..|.+. =+.. +...+ -..|.+.|..-||-|.-..++-..|..+++-+|
T Consensus 328 ~e~~~~~~~~~~~~~~-~~~~--~~~~~-----~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv 385 (670)
T KOG0239|consen 328 SEKQRLQSKVIDTEEQ-GEVQ--VDSPD-----KGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLV 385 (670)
T ss_pred cccccccccccccCCc-ceeE--eecCC-----CCCCCccccceeeeecCCcccHHHHHHHHHHHH
Confidence 2233444444432 0000 01111 124566677889999999999999999999988
No 200
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=42.43 E-value=5.1e+02 Score=28.66 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=26.6
Q ss_pred HHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 38 VQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 38 iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
.|-|.+.+++...+.+.++.++...+.-...|.+.|.--+|+...++.+
T Consensus 177 ~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 177 EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555555
No 201
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.29 E-value=1.3e+02 Score=24.73 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=38.1
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
..+|..++.+..+.++-|=.||.-.+.|+..|++.-.=|++-|.+|..+
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555666777888888899999999998888888888888654
No 202
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=41.95 E-value=32 Score=28.96 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 33 EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 33 E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
.+...|.||-.-=+++.|.-...=.+|++-|-.+..-..+|.-|.++...++..++.++.+|..+...-
T Consensus 19 ~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ 87 (116)
T PF05064_consen 19 TLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQ 87 (116)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888877665443
No 203
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=41.26 E-value=71 Score=28.23 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=35.6
Q ss_pred HHHhhHHHHHHhHHHHHHHhhh---cHHH--HHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 40 KQKRNEEEYSRNLKELQSELAS---TNEL--CQKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas---~~E~--~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
+....+...++|+++|+.|+.+ .||- --||+|++.-++.|.+.+.+....-+.+++..+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~ 100 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSL 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667777777654 2332 237888888877777777666655555554443
No 204
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=41.16 E-value=49 Score=28.74 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHH
Q 040671 40 KQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELK 91 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK 91 (358)
.|.---+|-.-++..|++|....+-+...|-++||.||..+-+.-.+.+.++
T Consensus 22 ~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 22 QWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3555556667778888888888888888888888888876665555544433
No 205
>PRK12705 hypothetical protein; Provisional
Probab=40.83 E-value=2.6e+02 Score=29.63 Aligned_cols=29 Identities=7% Similarity=0.232 Sum_probs=14.1
Q ss_pred cccccchhhhhhhhhhhhHH----HHHhhhhHH
Q 040671 154 VDNVECVPYLQKTLSAKDVV----IQNLISEKE 182 (358)
Q Consensus 154 ld~vq~lv~LqKsllvKD~~----I~~L~sekq 182 (358)
+|++...|.|--+-.+++++ +++|+.+-.
T Consensus 234 iddtp~~V~ls~fdp~rreia~~~l~~Li~dgr 266 (508)
T PRK12705 234 IDDTPEAVVISSFNPIRREIARLTLEKLLADGR 266 (508)
T ss_pred ecCCccchhhcccCccchHHHHHHHHHHHhcCC
Confidence 33333333444444555544 566665544
No 206
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.79 E-value=2.8e+02 Score=28.68 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHhh
Q 040671 11 FQLQALIAETRHLK 24 (358)
Q Consensus 11 lqLqaLisEvR~LR 24 (358)
++|+.+..|++...
T Consensus 280 ~~l~d~~~~l~~~~ 293 (563)
T TIGR00634 280 TEVEEATRELQNYL 293 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 207
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.62 E-value=2.2e+02 Score=25.10 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=19.3
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
+.+++...|+-|+.-|++...-|++.++.+...++.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544443
No 208
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.50 E-value=2e+02 Score=23.36 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=19.0
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
...|+.+|+-++.....+++..++++..|..+
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666554
No 209
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.82 E-value=78 Score=25.32 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhh
Q 040671 13 LQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKV 73 (358)
Q Consensus 13 LqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kI 73 (358)
.+.+-+++..||-|=..||.-++..-- ...+-|+|..++++|+.++..-.+.++++-+++
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpg-i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPG-IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777666666544443322 566778888999999999988888888876554
No 210
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=39.47 E-value=1.2e+02 Score=24.93 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred hHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 44 NEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 44 ~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.-++..+++.+||..|..--+-.........-|.+||.-|..-...| ++--.+++
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL-m~~s~v~~ 71 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL-MSSSSVFQ 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhh
Confidence 34455556666665555444444444444555566666666666665 33334443
No 211
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.45 E-value=1.4e+02 Score=29.70 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=45.6
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 40 KQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
-.|+--++++-+++|+++|-.+--+-+..||.++.-++....-||..-.-|.+-.+.|+.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 456777888888888888887777777888888888887777777777766666665553
No 212
>PRK12704 phosphodiesterase; Provisional
Probab=39.36 E-value=4e+02 Score=27.98 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=11.5
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
|++|-..|++....|++++++|...-
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re 116 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKE 116 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 213
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.23 E-value=3.4e+02 Score=25.72 Aligned_cols=13 Identities=38% Similarity=0.271 Sum_probs=7.5
Q ss_pred HHhhhhhhhhhhh
Q 040671 130 HEKINSHLTLFDS 142 (358)
Q Consensus 130 sEKLnshl~LFdS 142 (358)
++|+|+.+.-+++
T Consensus 149 ~~~v~~~~~~~s~ 161 (225)
T COG1842 149 QEKVNRSLGGGSS 161 (225)
T ss_pred HHHHHHHhcCCCc
Confidence 5556666555554
No 214
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=39.12 E-value=98 Score=27.60 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=43.5
Q ss_pred HHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 41 QKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 41 ~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
|..-.|-|+++++.||+-|..-+-.+=.==.++..+=..|-+|...+|-|+++|..|
T Consensus 5 l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 5 LNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 444556789999999999987665443223455667788999999999999999875
No 215
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.11 E-value=57 Score=28.77 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=25.2
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRE 102 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE 102 (358)
.|-++.+++.|....|+.+-.|| |+-.+|-..+|..|||||-
T Consensus 71 ~leak~k~see~IeaLqkkK~Yl-------Ek~v~eaE~nLrellqs~~ 112 (114)
T KOG3501|consen 71 HLEAKMKSSEEKIEALQKKKTYL-------EKTVSEAEQNLRELLQSRR 112 (114)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555555554 5555666666777777773
No 216
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.02 E-value=3.8e+02 Score=26.13 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=7.7
Q ss_pred hHhhhhhcchhhHHHHHhh
Q 040671 115 MKRAIETRDRKLTVLHEKI 133 (358)
Q Consensus 115 mk~sIe~~dr~l~VlsEKL 133 (358)
|+|..+..-....-+.+|+
T Consensus 347 L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 347 LQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444433333344433
No 217
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.98 E-value=3.1e+02 Score=25.10 Aligned_cols=45 Identities=29% Similarity=0.275 Sum_probs=24.8
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
..+..|+.++........+|+.++.-|+.....+..+...|+...
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555565555555555555555555554444
No 218
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.94 E-value=4.9e+02 Score=30.50 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=74.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHH
Q 040671 24 KEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYREN 103 (358)
Q Consensus 24 RerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~ 103 (358)
|.||--.|-+.+++-++..+.+++..++..-|..++....++.. |..-.-+..=-+.+|+.-||||.+++.- |-.
T Consensus 1030 r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~--eaq~~Q~k~LK~~~e~e~kElk~~l~kk---r~e 1104 (1189)
T KOG1265|consen 1030 RVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLS--EAQTNQTKALKESLEKETKELKKKLDKK---RME 1104 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34444455666666677777777776666666665544433321 1111111111244566666666665542 212
Q ss_pred HHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHH
Q 040671 104 FLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEA 183 (358)
Q Consensus 104 Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqA 183 (358)
=|+. ...|..++.++...-|=.+||+.-| |..+|++--+.+.-. .+-...-+.+.+.|-.+.+|
T Consensus 1105 ~ik~--------~~~~kdK~e~er~~rE~n~s~i~~~------V~e~krL~~~~~k~~--e~L~k~~~~~leql~e~~ka 1168 (1189)
T KOG1265|consen 1105 DIKV--------DKVIKDKAERERRKRELNSSNIKEF------VEERKRLAEKQSKRQ--EQLVKKHLEVLEQLAEEEKA 1168 (1189)
T ss_pred hhhh--------ccccccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHH
Confidence 1222 3345566666666666667775443 333443332222111 11222335667888888888
Q ss_pred HHHhhh
Q 040671 184 LHLEVG 189 (358)
Q Consensus 184 l~~El~ 189 (358)
+..|+.
T Consensus 1169 l~~e~~ 1174 (1189)
T KOG1265|consen 1169 LDAEAE 1174 (1189)
T ss_pred HHHHHH
Confidence 887764
No 219
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.60 E-value=2.5e+02 Score=23.91 Aligned_cols=89 Identities=18% Similarity=0.312 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 040671 34 IHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTC 113 (358)
Q Consensus 34 ~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stc 113 (358)
+-...++-.+.-|..-.+.+.|++++....-..++|+.++..++.++...+.++..++..+..+.. =++.+.+-.=
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~----~~k~~kee~~ 118 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA----KLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 334445555566667777777777777777777777777777777777777777777777665433 2344444444
Q ss_pred hhHhhhhhcchhh
Q 040671 114 DMKRAIETRDRKL 126 (358)
Q Consensus 114 emk~sIe~~dr~l 126 (358)
-|+-.++.+.-+-
T Consensus 119 klk~~~~~~~tq~ 131 (151)
T PF11559_consen 119 KLKNQLQQRKTQY 131 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 4554555444333
No 220
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.51 E-value=5.3e+02 Score=29.54 Aligned_cols=90 Identities=22% Similarity=0.219 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhhhhh------hhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHH-----HHhhhhhhccc
Q 040671 11 FQLQALIAETRHLKEKE------NSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQK-----LERKVSYLQND 79 (358)
Q Consensus 11 lqLqaLisEvR~LRerE------~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qk-----LE~kIk~Lene 79 (358)
..+|.||+||-+.=.== ..-.-|+-++.|-++..-+-.||.+|-|--+|-+...+-+- --=.+--||-=
T Consensus 356 sE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSl 435 (861)
T PF15254_consen 356 SEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSL 435 (861)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHH
Confidence 35667777775532110 01114666677777776667777776666555442211100 00012235555
Q ss_pred hHHHHHhHHHHHHHHHHHHHhh
Q 040671 80 NALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 80 n~~LEkn~keLK~ti~~LLQSR 101 (358)
|..|++..+|+-..++. ||+|
T Consensus 436 N~~Lq~ql~es~k~~e~-lq~k 456 (861)
T PF15254_consen 436 NMSLQNQLQESLKSQEL-LQSK 456 (861)
T ss_pred HHHHHHHHHHHHHhHHH-HHHh
Confidence 66666666665555443 3443
No 221
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.87 E-value=47 Score=29.27 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=9.4
Q ss_pred HHHhhhhhhccchHHHHHhHH
Q 040671 68 KLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~k 88 (358)
.||.+.+..+.+.+.|+++..
T Consensus 71 ~leak~k~see~IeaLqkkK~ 91 (114)
T KOG3501|consen 71 HLEAKMKSSEEKIEALQKKKT 91 (114)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444433
No 222
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.70 E-value=3.2e+02 Score=24.91 Aligned_cols=50 Identities=28% Similarity=0.390 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
..++..+++.-....+.|+.++.-|.+..+.++++..+.+...+...+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~e 171 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEE 171 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666777777777777777777776666655554444443
No 223
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.69 E-value=4.2e+02 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=12.3
Q ss_pred hHHHHhhhcccccchhhh
Q 040671 146 EAFSIKQVVDNVECVPYL 163 (358)
Q Consensus 146 Ea~svKqvld~vq~lv~L 163 (358)
=|.+|++|++-=+.|+.=
T Consensus 135 RvtAi~~iv~aDk~ile~ 152 (265)
T COG3883 135 RVTAISVIVDADKKILEQ 152 (265)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 366777777777777743
No 224
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.67 E-value=6.4e+02 Score=29.51 Aligned_cols=10 Identities=20% Similarity=0.332 Sum_probs=4.9
Q ss_pred hhHHhHhhhh
Q 040671 234 RWLDRVKDAN 243 (358)
Q Consensus 234 ~~~d~v~e~~ 243 (358)
+|.+.|.+++
T Consensus 1209 ~~~~~l~~~l 1218 (1353)
T TIGR02680 1209 SLLEHLAEAL 1218 (1353)
T ss_pred CHHHHHHHHh
Confidence 4555554443
No 225
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.42 E-value=4.1e+02 Score=26.11 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=61.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 20 TRHLKEKENSATEEIHLLVQKQKRN-------EEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 20 vR~LRerE~sareE~~~~iQk~K~~-------EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
++.+..-|.+.-.-.+.+.|++..- +--....++.+++||- +.-.+.|.++++||.+..+|+-+.+..+.
T Consensus 26 ~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLq---e~eek~e~~l~~Lq~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 26 IKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQ---EWEEKEESKLSKLQQQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888876532 2223445666777764 45568899999999999999888887776
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhHh
Q 040671 93 TINRLLQYRENFLSAYEESTCDMKR 117 (358)
Q Consensus 93 ti~~LLQSRE~Fi~~Ye~stcemk~ 117 (358)
.+. |+.-|.|.-|..+.
T Consensus 103 el~--------~L~TYkD~EYPvK~ 119 (258)
T PF15397_consen 103 ELN--------FLSTYKDHEYPVKA 119 (258)
T ss_pred HHH--------HHHHHhhhhhhHHH
Confidence 664 56666676666664
No 226
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=36.96 E-value=88 Score=24.84 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=39.9
Q ss_pred HHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHH
Q 040671 53 KELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSA 107 (358)
Q Consensus 53 ~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~ 107 (358)
+.|..++..-.-+-++|+.++.-.| -..-++|+-+||...-+.|-..|.+|++-
T Consensus 4 ~~L~~QLd~I~~~K~~l~ik~~H~E-kl~kitK~p~El~~i~~kl~~~R~~FLn~ 57 (62)
T PF06034_consen 4 RSLTQQLDEINQMKRQLTIKSQHWE-KLKKITKNPKELQEIEKKLQELRQNFLNF 57 (62)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665554443 35678999999999999999999999874
No 227
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=36.93 E-value=2.3e+02 Score=29.97 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=61.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH---HhHHHHHHHHH
Q 040671 19 ETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLE---NKQKELKETIN 95 (358)
Q Consensus 19 EvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE---kn~keLK~ti~ 95 (358)
|+-.|-.---.+..+....+......-.+-..++.++...++--+..+.-+-.-|.++|+.|..|+ .|++-|...|+
T Consensus 13 eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~ 92 (701)
T PF09763_consen 13 ELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELE 92 (701)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 333333333344556666677777777778888888999999999999999999999999999887 47777888888
Q ss_pred HHHHh
Q 040671 96 RLLQY 100 (358)
Q Consensus 96 ~LLQS 100 (358)
.||+.
T Consensus 93 ~Ll~~ 97 (701)
T PF09763_consen 93 NLLDT 97 (701)
T ss_pred HHHHh
Confidence 88763
No 228
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=36.73 E-value=3.7e+02 Score=25.37 Aligned_cols=119 Identities=16% Similarity=0.244 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Q 040671 29 SATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAY 108 (358)
Q Consensus 29 sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Y 108 (358)
.+-.|+..+++.--+.|++|.+.++.|-.-....+|. --|.+....+-++.+.+=+.+..+..+|+..+.-=+.|.+.|
T Consensus 19 ~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~-gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f~~~q 97 (242)
T cd07671 19 KMCKDVEELLKQRAQAEERYGKELVQIARKAGGQTEI-NTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEFRERQ 97 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446888888888999999999999998887655553 677788888999999999999999999999876568898888
Q ss_pred hhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHH
Q 040671 109 EESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAF 148 (358)
Q Consensus 109 e~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~ 148 (358)
.+..-.++-.++.--+...-.--|++..-.-|..-=+|+-
T Consensus 98 ke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~ 137 (242)
T cd07671 98 KEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREAD 137 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865555554444444444444455555555554444543
No 229
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=36.41 E-value=45 Score=26.74 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=30.5
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
+.++|..-|.+|++-|+.....+++.-+.++.++..+.+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888888877766543
No 230
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=36.27 E-value=1.5e+02 Score=28.13 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHhhHHHHHHhHHHHHHHhhh
Q 040671 8 KFKFQLQALIAETRHLKEKENSA----TEEIHLLVQKQKRNEEEYSRNLKELQSELAS 61 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sa----reE~~~~iQk~K~~EEe~~Re~~ELqaElas 61 (358)
++.+|++..=.++|.|..-+..- ..++..+|.||+..-. ..+.+|+..+..
T Consensus 142 kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q---~~l~eL~~~~~~ 196 (221)
T PF10376_consen 142 KLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQ---EALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 55667777777777776544432 2378888888876543 455666666555
No 231
>PRK11415 hypothetical protein; Provisional
Probab=36.22 E-value=1.8e+02 Score=23.08 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhh-hccchHHHHHhHHHHHHHHHHHHHh
Q 040671 33 EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSY-LQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 33 E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~-Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
|.+..|.++|.+.... +.|..+-..-|...++||..... -..+...|-+.--.||+.|..+|..
T Consensus 4 e~~d~I~~Lk~~D~~F----~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~~ 68 (74)
T PRK11415 4 EYRDLISRLKNENPRF----MSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQ 68 (74)
T ss_pred hHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567788888876654 55777777788888888887552 3566888888888999999999864
No 232
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.88 E-value=4.2e+02 Score=26.75 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=22.8
Q ss_pred hhhhHHHHhhhcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhH
Q 040671 143 IEKEAFSIKQVVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKL 191 (358)
Q Consensus 143 IekEa~svKqvld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~l 191 (358)
|-+|+...-..+.+..-||.|. .+|.+|-.|..-|-.-||=+
T Consensus 313 vK~emeerg~~mtD~sPlv~IK-------qAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 313 VKQEMEERGSSMTDGSPLVKIK-------QALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred HHHHHHHhcCCCCCCCHHHHHH-------HHHHHHHHHHHHhhhhhhee
Confidence 4444444444455555666665 45556766666665555433
No 233
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=35.85 E-value=67 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.6
Q ss_pred hhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 60 ASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 60 as~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
...++|..-|+++++-|+.....|+++..+++.++..+-
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999988887754
No 234
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=35.52 E-value=2.9e+02 Score=28.71 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=8.7
Q ss_pred HHHHhcChhhhhhhhhh
Q 040671 200 DAIATMNQEDNNAFHTA 216 (358)
Q Consensus 200 d~~s~m~~E~~k~Fssi 216 (358)
+.++.|.||-+.-.++|
T Consensus 285 ~~~a~isHelrtPL~~I 301 (779)
T PRK11091 285 TFISTISHELRTPLNGI 301 (779)
T ss_pred HHHHHhhHhhcCcHHHH
Confidence 44555555555544444
No 235
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.38 E-value=1.5e+02 Score=32.30 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=56.2
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHH-----------HHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhh
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLV-----------QKQKRNEEEYSRNLKELQSELASTNELCQKLERKVS 74 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~i-----------Qk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk 74 (358)
+++= -|||+++.|+..|-+-=..+++. +.+| -|++.+-++++-+ +.+.-.++.+|++.-|-
T Consensus 227 l~~E-qQlq~~~~ehkllee~~~rl~~~-~s~VegS~S~~~l~~ek~r~~lee~~~~------e~~e~rk~v~k~~~l~q 298 (613)
T KOG0992|consen 227 LNSE-QQLQALIREHKLLEEHLERLHLQ-LSDVEGSWSGQNLALEKQRSRLEEQVAE------ETTEKRKAVKKRDDLIQ 298 (613)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3444 38999999999987655555532 2222 2344443333322 56666777778888888
Q ss_pred hhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 040671 75 YLQNDNALLENKQKELKETINRLLQYRENFLSAYEES 111 (358)
Q Consensus 75 ~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~s 111 (358)
-+..++..|+|-..+++-+ .+....|...++-
T Consensus 299 ~~~~~~~eL~K~kde~~~n-----~~~~~lie~lq~e 330 (613)
T KOG0992|consen 299 SRKQVSFELEKAKDEIKQN-----DDKVKLIEELQDE 330 (613)
T ss_pred HHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHH
Confidence 8888899999666555533 2334444444443
No 236
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.23 E-value=2.8e+02 Score=29.53 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=12.0
Q ss_pred hccccceeeeccccccceeecc
Q 040671 308 STNILMRISAKDVKDTCVVSAH 329 (358)
Q Consensus 308 ~~n~~~~is~~~~k~~~~~~~h 329 (358)
++||++==.|-.++|.++++-.
T Consensus 279 tANGIeLPDV~GaivSGtAsGD 300 (472)
T TIGR03752 279 TANGIELPDVAGAVVSGTASGD 300 (472)
T ss_pred cccCccCCCccceEEeeeeccc
Confidence 6677433355556666655543
No 237
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.18 E-value=3.4e+02 Score=26.72 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=13.7
Q ss_pred HhhHHHHHHHhhhhhhhH
Q 040671 99 QYRENFLSAYEESTCDMK 116 (358)
Q Consensus 99 QSRE~Fi~~Ye~stcemk 116 (358)
.-|=+|...||..--+|+
T Consensus 218 ~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 218 SVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred hcChHHHHHHHHHHHHHH
Confidence 348999999997655555
No 238
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.92 E-value=1.3e+02 Score=30.28 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=12.8
Q ss_pred hhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 72 KVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 72 kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
+++-|-.+...||...+++...+..++.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 239
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=34.89 E-value=5.8e+02 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 65 LCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 65 ~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+..+||..-...+..-++|++.+..|+.+.++|
T Consensus 86 l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 86 VTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555666777777777666665
No 240
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.86 E-value=1.5e+02 Score=30.69 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=38.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 23 LKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 23 LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
||.|-..-.+.+-....-.|+++|+...=.++|.++ .++||....-|+..-+-|-.+..|-.+.+++
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~-------~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAM-------KETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 444333333344444445566666665555555544 4667777777777777777776664444443
No 241
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.75 E-value=2.8e+02 Score=23.33 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=30.6
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
..+||..-|+++++.|+.....|+++...++..++.+.+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888777776543
No 242
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=34.54 E-value=1.9e+02 Score=24.97 Aligned_cols=70 Identities=27% Similarity=0.236 Sum_probs=44.4
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
+||++-|...|=-=|-+=+.+-...+++++..-| .++-++.|+.+-+=--+.|++||.-||.|....++
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~-----------~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQ-----------ALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5777777776654444444444444444443332 34445566666666678999999999999986654
Q ss_pred h
Q 040671 86 K 86 (358)
Q Consensus 86 n 86 (358)
.
T Consensus 76 ~ 76 (102)
T PF10205_consen 76 K 76 (102)
T ss_pred c
Confidence 3
No 243
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.52 E-value=65 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=24.4
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.+|+..|.-++.+|+.+-+....++.+++.||.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777787777777777777776664
No 244
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=34.50 E-value=2.4e+02 Score=24.00 Aligned_cols=39 Identities=31% Similarity=0.369 Sum_probs=27.1
Q ss_pred hhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 71 RKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 71 ~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
..+.-++.+...|++..++++..+..+.+.-++|.+.++
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777777777766665
No 245
>PF14989 CCDC32: Coiled-coil domain containing 32
Probab=34.39 E-value=38 Score=30.72 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=37.7
Q ss_pred HhhhcHHHHHHHHhhhhhhccch------HHHHHhHHHHHHHHHHHHHh
Q 040671 58 ELASTNELCQKLERKVSYLQNDN------ALLENKQKELKETINRLLQY 100 (358)
Q Consensus 58 Elas~~E~~qkLE~kIk~Lenen------~~LEkn~keLK~ti~~LLQS 100 (358)
-+--++.-+..||+|.+-++..+ ++|..-..-=++.|.+||++
T Consensus 50 pl~DS~~YLasLE~KL~rik~~~~~vtsKemL~sL~~aK~d~~~rlL~~ 98 (148)
T PF14989_consen 50 PLPDSEVYLASLERKLKRIKGKNREVTSKEMLRSLSQAKEDCWDRLLSS 98 (148)
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556778999999999999999 88888888888999999998
No 246
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.35 E-value=2.9e+02 Score=24.16 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=43.8
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
.+.-+|++.-....+...++.+++.+.+.+.++...+.-+..+-..+.+...+|+....
T Consensus 78 ~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 78 ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566777777777777888888888888888888888777777777777777765543
No 247
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=34.33 E-value=3.7e+02 Score=25.95 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 29 SATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 29 sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
+-..-+.-+.++.-+.++.+..+++.|-.-|-.++---.-.||+|.+||.+-.-||.+-.+.|.
T Consensus 123 ~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 123 SNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 3345566677788888899999999888877777766677888888888888888877665554
No 248
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.31 E-value=5.9e+02 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=13.3
Q ss_pred hhhccchHHHHHhHHHHHHHHHHH
Q 040671 74 SYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 74 k~Lenen~~LEkn~keLK~ti~~L 97 (358)
.-++++...+..+++.|+..+..+
T Consensus 341 ~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 341 KSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555565555555553
No 249
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.09 E-value=3.9e+02 Score=24.84 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=73.6
Q ss_pred chhhhHHHHHHHHH--HHhhhhhhhhHHHHHHH------HHHHH--------hhHHHHHHhHHHHHHHhhhcHHHHHHHH
Q 040671 7 SKFKFQLQALIAET--RHLKEKENSATEEIHLL------VQKQK--------RNEEEYSRNLKELQSELASTNELCQKLE 70 (358)
Q Consensus 7 SkfklqLqaLisEv--R~LRerE~sareE~~~~------iQk~K--------~~EEe~~Re~~ELqaElas~~E~~qkLE 70 (358)
++..-.-+.|+.|+ |++......|..|+..+ |++|= ...+.-++.+.+..+.|....++++.-.
T Consensus 126 ~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777777 45566666666554432 44441 1123345666667777777777777777
Q ss_pred hhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhH
Q 040671 71 RKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMK 116 (358)
Q Consensus 71 ~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk 116 (358)
.+++--+.=|..-+++-.+++...+.|-..+..+-+....+...+.
T Consensus 206 ~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 206 NKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888888888888888888888888877665554
No 250
>PRK00106 hypothetical protein; Provisional
Probab=33.96 E-value=5.4e+02 Score=27.57 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=11.8
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
|++|-..|+.....|++++++|....
T Consensus 106 L~qREE~LekRee~LekrE~eLe~ke 131 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKE 131 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444554444444433
No 251
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=33.95 E-value=1.8e+02 Score=31.80 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=42.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHH---------------------hhhcHHHHHHHHhhhhhh
Q 040671 18 AETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSE---------------------LASTNELCQKLERKVSYL 76 (358)
Q Consensus 18 sEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaE---------------------las~~E~~qkLE~kIk~L 76 (358)
+|.|..+++++-+-+|+...-|+ |++.+.-+++++..+++ |-++-.+++||++|-..|
T Consensus 317 ~~~~r~~~k~~L~~~e~~~~p~~-~eaqari~~~l~kv~~k~~~~k~~~p~~wvp~~K~~RlLtsSAsa~rrl~~KAE~m 395 (707)
T KOG0957|consen 317 SEARRITVKRRLRSGELEKNPQK-KEAQARIREELDKVIEKECKNKPKGPISWVPKPKQARLLTSSASAFRRLETKAEEM 395 (707)
T ss_pred HHHHHHHHHHHHHhcccccCCCc-cHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccchHHHHHHHHHHHHHh
Confidence 35555555555444555555444 44444444444444433 567889999999998887
Q ss_pred ccchHHHHHhHHH
Q 040671 77 QNDNALLENKQKE 89 (358)
Q Consensus 77 enen~~LEkn~ke 89 (358)
-.+-.-++..+..
T Consensus 396 g~s~~~f~~~ead 408 (707)
T KOG0957|consen 396 GLSRKEFRQREAD 408 (707)
T ss_pred cccHhhhcccccC
Confidence 7766666544443
No 252
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.43 E-value=7.9e+02 Score=28.22 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHH--------HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEE--------YSRNLKELQSELASTNELCQKLERKVSYLQNDNAL 82 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe--------~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~ 82 (358)
|=||-|=+|--.||. .+|++-|++++.|.- +.=|+-.||+=-++ |+..++-.....++
T Consensus 387 LA~QplrsENaqLrR-------rLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~-------Lq~ql~es~k~~e~ 452 (861)
T PF15254_consen 387 LAMQPLRSENAQLRR-------RLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMS-------LQNQLQESLKSQEL 452 (861)
T ss_pred hhhhhhhhhhHHHHH-------HHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHH-------HHHHHHHHHHhHHH
Confidence 346777788888873 466777777765533 34466666554333 33344444444444
Q ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 83 LENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 83 LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
|..+..||-..|+++=+---.|.+.++
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444444444444
No 253
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=33.03 E-value=4.8e+02 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHHHhhhcH
Q 040671 46 EEYSRNLKELQSELASTN 63 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~ 63 (358)
....+++++|..++..+.
T Consensus 106 ~~l~~~~~~l~~~~~~~~ 123 (779)
T PRK11091 106 VQLKDNIAQLNQEIAERE 123 (779)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555544443
No 254
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.75 E-value=1.4e+02 Score=28.48 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhcccccCcc
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKENCNDIGTVN 230 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe~~Ddvg~~~ 230 (358)
.+++-+-.+.+.|..|+.+++--|.+|-.....++.|||+.-- -+-|..|.++-+..
T Consensus 116 Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~--~~y~~~~~~wrk~k 172 (201)
T KOG4603|consen 116 LTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY--REYQKYCKEWRKRK 172 (201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4466677788999999999999999999999999999997532 35677787776443
No 255
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=32.19 E-value=2.3e+02 Score=21.57 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=20.2
Q ss_pred hhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 71 RKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 71 ~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..|..|++++..|..+..+++..|+.+
T Consensus 58 ~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 58 DEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667777788888888888887765
No 256
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=32.16 E-value=19 Score=30.31 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=37.1
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHH
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
-|..|-+.=-+.+.++..|..++........+|+..+.|++..-..|+.-...+
T Consensus 44 ~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~l 97 (116)
T PF05064_consen 44 QVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPL 97 (116)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788888888888888888888888888888776655555443333
No 257
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.13 E-value=8.8e+02 Score=28.37 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=29.3
Q ss_pred hhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcC
Q 040671 170 KDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 170 KD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~ 206 (358)
+-..++.|++.-..++.|+.+++.+-+...++..++.
T Consensus 388 rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~ 424 (1109)
T PRK10929 388 QRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVN 424 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888899999888888877777665
No 258
>PF15463 ECM11: Extracellular mutant protein 11
Probab=32.03 E-value=1.9e+02 Score=25.01 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHH
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQK 68 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qk 68 (358)
++-..++||.+.+--..++..+.+.++|+.|.++++.
T Consensus 83 ~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~ 119 (139)
T PF15463_consen 83 EQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRA 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888899988888887654
No 259
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.72 E-value=75 Score=30.41 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
.-++.+..||..|+.........|.+.|+-|+.||-.|=.|.+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888899999998889999999999999999887755543
No 260
>PRK12704 phosphodiesterase; Provisional
Probab=31.50 E-value=5.6e+02 Score=26.96 Aligned_cols=6 Identities=67% Similarity=1.032 Sum_probs=2.7
Q ss_pred eccCCC
Q 040671 327 SAHHPD 332 (358)
Q Consensus 327 ~~hh~d 332 (358)
..||-|
T Consensus 404 ~~HHe~ 409 (520)
T PRK12704 404 AAHHGD 409 (520)
T ss_pred HHcCCC
Confidence 345543
No 261
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.50 E-value=4e+02 Score=24.25 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh----hHHHHHHHhhhhhhhHhh
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKETINRLLQY----RENFLSAYEESTCDMKRA 118 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS----RE~Fi~~Ye~stcemk~s 118 (358)
...|+.+|+-|+.++..|++...+++..++.+-.. +..-.+.|++-..-+++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665555543211 122234455555555544
No 262
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=31.43 E-value=1.4e+02 Score=28.82 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=16.8
Q ss_pred cchhhhHHHHHHHHHHHhhh
Q 040671 6 LSKFKFQLQALIAETRHLKE 25 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRe 25 (358)
|..++-|+..+..|+|.|-.
T Consensus 1 l~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLD 20 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHh
Confidence 35678889999999999986
No 263
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.41 E-value=9.1e+02 Score=28.33 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=54.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH
Q 040671 8 KFKFQLQALIAETRHLKEKENSAT---EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLE 84 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sar---eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE 84 (358)
++|.+|+.-..|++.+.+-=.-+. .+-...|++++..|+...+..-.||..+..+.+..+-|=.||-++.+.+.-=.
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~ 566 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQ 566 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccH
Confidence 455556666666665554333222 33345588999999999999999999999999988888888877776654433
Q ss_pred Hh
Q 040671 85 NK 86 (358)
Q Consensus 85 kn 86 (358)
..
T Consensus 567 ~~ 568 (1041)
T KOG0243|consen 567 EV 568 (1041)
T ss_pred HH
Confidence 33
No 264
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.36 E-value=1.9e+02 Score=22.86 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
...+-+|...||.-+++...|=.-|--.+.+...|....+.|...+..+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888888888888888888888887777777766653
No 265
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.27 E-value=6.5e+02 Score=26.56 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
..|..|..++..+..++..+..-+...+.-+.....+
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777766655444
No 266
>PTZ00464 SNF-7-like protein; Provisional
Probab=31.22 E-value=4.5e+02 Score=24.71 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhH--HHHHHHhhhhhhhH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLLQYRE--NFLSAYEESTCDMK 116 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE--~Fi~~Ye~stcemk 116 (358)
+-++-|++|+....+.+..-.|-..+..+-.+.. ..+.+|+.++=.|+
T Consensus 66 ~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK 115 (211)
T PTZ00464 66 LLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLK 115 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666665544444333333222222 23455555554444
No 267
>PF13514 AAA_27: AAA domain
Probab=31.18 E-value=8.1e+02 Score=27.65 Aligned_cols=181 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHhhHHHHH-------------HhHHHHHHHhhhcHHHHHHH
Q 040671 5 RLSKFKFQLQALIAETRHLKEKENSAT--EEIHLLVQKQKRNEEEYS-------------RNLKELQSELASTNELCQKL 69 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LRerE~sar--eE~~~~iQk~K~~EEe~~-------------Re~~ELqaElas~~E~~qkL 69 (358)
.+...+-+++.|=.+...|+.+..... ....-.+++|++.+.+.. .+...+..++......+..+
T Consensus 182 ~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1111)
T PF13514_consen 182 ALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERL 261 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhccchHHHHHhHH--HHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhH
Q 040671 70 ERKVSYLQNDNALLENKQK--ELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEA 147 (358)
Q Consensus 70 E~kIk~Lenen~~LEkn~k--eLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa 147 (358)
+.++.-++.+...+.-... .....|..|.+-+-.+-++-.+ |-.-..--.....++
T Consensus 262 ~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~d----------------------l~~~~~e~~~~~~~~ 319 (1111)
T PF13514_consen 262 QEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQD----------------------LPRLEAELAELEAEL 319 (1111)
T ss_pred HHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
Q ss_pred HHHhhhcc---cccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 148 FSIKQVVD---NVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 148 ~svKqvld---~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
...-+-++ +...+.-+.-++..+ ..|..|..+++.+...+.....-+.........+..+
T Consensus 320 ~~~~~~lg~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 320 RALLAQLGPDWDEEDLEALDPSLAAR-ERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHhcCCCcccchhhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.07 E-value=4.8e+02 Score=28.21 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHH
Q 040671 8 KFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKL 69 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkL 69 (358)
-|.-|+-.|..+......|-.....||+.+..|...+|.+ ...+..||.+++...++|
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e----k~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE----KESLEEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4666777788888888888888888888888887777543 233445555554444444
No 269
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=31.01 E-value=1e+03 Score=28.67 Aligned_cols=173 Identities=22% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH------hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 13 LQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSR------NLKELQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 13 LqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~R------e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
..-+-.|.|.+-+.-.--|-|+..+-+..-+.+.+..+ ++.+.+..++..=.-.+.||..+.-|+.+-.++-.+
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~ 900 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSK 900 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhhhhhh
Q 040671 87 QKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPYLQKT 166 (358)
Q Consensus 87 ~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~LqKs 166 (358)
.++++..+..+.-+-+.++.+|+.--=+=.+.+.+..+.+.-+.|+..-...+..-....-...+.=++
T Consensus 901 ~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~----------- 969 (1294)
T KOG0962|consen 901 VKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLR----------- 969 (1294)
T ss_pred HHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhc-----------
Q ss_pred hhhhhHHHHHhhhhHHHHHHhhhhHH--HHHHHHHH
Q 040671 167 LSAKDVVIQNLISEKEALHLEVGKLG--IILQRIQD 200 (358)
Q Consensus 167 llvKD~~I~~L~sekqAl~~El~~le--iiLqrfQd 200 (358)
|..+.-+-..++....++..+. +..+..++
T Consensus 970 ----~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~e 1001 (1294)
T KOG0962|consen 970 ----IAQLSESEEHLEERDNEVNEIKQKIRNQYQRE 1001 (1294)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 270
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.88 E-value=2e+02 Score=27.31 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=35.5
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
+-.-+|+.+|..-..-.++|--.|.-++.+..+|.++|+++-..|..++.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555444445566666667888999999999999999988775
No 271
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=30.86 E-value=7.3e+02 Score=27.01 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHhhhhh----------hhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhh
Q 040671 7 SKFKFQLQALIAETRHLKEKE----------NSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYL 76 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE----------~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~L 76 (358)
|++|++|| |+|.|++.. ++..++++++-++.+.-.|-+.-..-+--+-+-+....+|.+-..+---
T Consensus 182 SQlkvrlq----e~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA 257 (554)
T KOG4677|consen 182 SQLKVRLQ----EVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLA 257 (554)
T ss_pred hhHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred ccchHHHHHhHHHHHHHHHH--HHHhhHHHHHHHhhhh
Q 040671 77 QNDNALLENKQKELKETINR--LLQYRENFLSAYEEST 112 (358)
Q Consensus 77 enen~~LEkn~keLK~ti~~--LLQSRE~Fi~~Ye~st 112 (358)
.--+.---|..-|+|-.++- +|.++|..|....-.+
T Consensus 258 ~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~ 295 (554)
T KOG4677|consen 258 LRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREH 295 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
No 272
>PLN02320 seryl-tRNA synthetase
Probab=30.72 E-value=1.7e+02 Score=30.93 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=16.9
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
|-.+++-|-.+...||...+++...++.+|..
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555555555555543
No 273
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.64 E-value=1e+02 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=11.8
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
|.+++..++.+|+.|+.....|+..|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444
No 274
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=30.47 E-value=4.2e+02 Score=24.08 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=39.6
Q ss_pred hHHHHhhhcccccchh----hhhhhhhhhhHHHHHhhh-------hHHHHHHhhhhHHHHHHHHHHHHHhcChhhhh
Q 040671 146 EAFSIKQVVDNVECVP----YLQKTLSAKDVVIQNLIS-------EKEALHLEVGKLGIILQRIQDAIATMNQEDNN 211 (358)
Q Consensus 146 Ea~svKqvld~vq~lv----~LqKsllvKD~~I~~L~s-------ekqAl~~El~~leiiLqrfQd~~s~m~~E~~k 211 (358)
=+.|||.++..-..+. .+++.|.-|..-++.|.. ..+.+..||..++...+..+.-|..|+...++
T Consensus 99 ~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~ 175 (216)
T cd07627 99 SIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544433332 344555555555666642 33578888888888888777777777665544
No 275
>PRK00106 hypothetical protein; Provisional
Probab=30.42 E-value=6.9e+02 Score=26.81 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=4.8
Q ss_pred HHHHhhhhH
Q 040671 173 VIQNLISEK 181 (358)
Q Consensus 173 ~I~~L~sek 181 (358)
++++|+.|.
T Consensus 284 ~le~Li~dg 292 (535)
T PRK00106 284 TLESLIKDG 292 (535)
T ss_pred HHHHHHHcC
Confidence 355565553
No 276
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.08 E-value=4.9e+02 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 85 NKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 85 kn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
+-..+++..|+.|++-|.+.++....
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrq 57 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQ 57 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665543
No 277
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=30.00 E-value=2.1e+02 Score=29.23 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHH
Q 040671 10 KFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKE 89 (358)
Q Consensus 10 klqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ke 89 (358)
|-|+-+||.|+-.+- +|-.-..++|| .-++-+|.||.-|++.|+++-+.-..
T Consensus 7 k~ri~~li~~la~~~-------~~~e~~~~~~~---------------------~~~~~~e~~~~~l~~~~~~~~~~~~~ 58 (328)
T PF15369_consen 7 KRRIANLIKELARVS-------EEKEVTEERLK---------------------AEQESFEKKIRQLEEQNELIIKERED 58 (328)
T ss_pred HHHHHHHHHHHHHhh-------hHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHhhH
Q 040671 90 LKETINRLLQYRE 102 (358)
Q Consensus 90 LK~ti~~LLQSRE 102 (358)
|. +|+||
T Consensus 59 ~~------~qyre 65 (328)
T PF15369_consen 59 LQ------QQYRE 65 (328)
T ss_pred HH------HHHHH
No 278
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.94 E-value=3.7e+02 Score=23.35 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHHhh
Q 040671 9 FKFQLQALIAETRHLK 24 (358)
Q Consensus 9 fklqLqaLisEvR~LR 24 (358)
++-+|..+=+|+-.|+
T Consensus 21 L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 279
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.72 E-value=1.1e+02 Score=23.70 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=27.4
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
.+-+|+..+|.-+++++.|-.-|--.+.+...|+...+-|...+..+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666666666666665555544
No 280
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.01 E-value=3.5e+02 Score=22.73 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=25.0
Q ss_pred hHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcC
Q 040671 171 DVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 171 D~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~ 206 (358)
|.++.+|...+..+...+..+.-.+.+.++.+..+.
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777766665543
No 281
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.81 E-value=4.8e+02 Score=24.26 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKE 89 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ke 89 (358)
...++..|+.++...+-++-.||++|.-|+.|...+.+...+
T Consensus 101 le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 101 LEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 344566677777777777778888888888887777665443
No 282
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.58 E-value=1e+03 Score=27.95 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+++.++....+.+...+.++.-++.+...|++...+++..+..|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444445555555555555444
No 283
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.18 E-value=3.4e+02 Score=22.32 Aligned_cols=14 Identities=7% Similarity=0.406 Sum_probs=9.1
Q ss_pred hhhhhhhhhhhhhh
Q 040671 132 KINSHLTLFDSIEK 145 (358)
Q Consensus 132 KLnshl~LFdSIek 145 (358)
+|.....+|-+||.
T Consensus 45 ~l~~d~~vyk~VG~ 58 (110)
T TIGR02338 45 RLPDDTPVYKSVGN 58 (110)
T ss_pred cCCCcchhHHHhch
Confidence 45556667777776
No 284
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.15 E-value=4.1e+02 Score=23.28 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH---hHHHHHHHhhhcHHH---HHHHHhhhhhhccchHHHHH
Q 040671 12 QLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSR---NLKELQSELASTNEL---CQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 12 qLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~R---e~~ELqaElas~~E~---~qkLE~kIk~Lenen~~LEk 85 (358)
+...+-..++.|-.+--..-.|+..+-.|-...|.+..+ .+.++...+..++.. ...|.|||.-||.+....++
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 344445555555555555556777777777776665543 333333333333332 23477777777777666666
Q ss_pred hHHHHHHHHH
Q 040671 86 KQKELKETIN 95 (358)
Q Consensus 86 n~keLK~ti~ 95 (358)
+.++..+.+.
T Consensus 95 ~L~e~~ekl~ 104 (143)
T PF12718_consen 95 KLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 285
>PRK11519 tyrosine kinase; Provisional
Probab=27.94 E-value=2.4e+02 Score=30.13 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=11.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhH
Q 040671 80 NALLENKQKELKETINRLLQYRE 102 (358)
Q Consensus 80 n~~LEkn~keLK~ti~~LLQSRE 102 (358)
+..|+....-.+.....||+.++
T Consensus 372 ~~~L~Re~~~~~~lY~~lL~r~~ 394 (719)
T PRK11519 372 IVRLTRDVESGQQVYMQLLNKQQ 394 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555544
No 286
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.88 E-value=47 Score=25.85 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=18.3
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
...++..|+-|+....-++++.++++..+..+++
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555555666666666655443
No 287
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.80 E-value=1.3e+02 Score=26.69 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=18.0
Q ss_pred HHHhhhcHHHHHHHHhhhhhhccc
Q 040671 56 QSELASTNELCQKLERKVSYLQND 79 (358)
Q Consensus 56 qaElas~~E~~qkLE~kIk~Lene 79 (358)
.||-.++.+.+..+|+||.||+.-
T Consensus 46 Naey~aak~~q~~~e~RI~~L~~~ 69 (158)
T PRK05892 46 QAEAIQRADELARLDDRINELDRR 69 (158)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777888899999998743
No 288
>PRK01156 chromosome segregation protein; Provisional
Probab=27.68 E-value=8.1e+02 Score=26.52 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=19.6
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIH 35 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~ 35 (358)
+..+...+..+-.+++.|+.+......++.
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777776665555444
No 289
>TIGR01845 outer_NodT efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined.
Probab=27.61 E-value=5.4e+02 Score=24.51 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH-------HHHHHHHhhHHHHHHHhhhh
Q 040671 40 KQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE-------TINRLLQYRENFLSAYEEST 112 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~-------ti~~LLQSRE~Fi~~Ye~st 112 (358)
..+++..+++..+.....||..+=-..+....+++..+.-....++..+-.+. ++-.||+.+...+.
T Consensus 355 ~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~~vl~aq~~~~~------ 428 (454)
T TIGR01845 355 TYDAAVAQYRQTVLTAFQEVADALVALQALARRLDAQRQAVEQAQEALSLAQTRYRAGLDSYLTVLEAQRSLLT------ 428 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH------
Confidence 44455555555555555555544444444445555444433333333332222 33334444433332
Q ss_pred hhhHhhhhhcchhhHHHHHhhhhhhhhhhhhh
Q 040671 113 CDMKRAIETRDRKLTVLHEKINSHLTLFDSIE 144 (358)
Q Consensus 113 cemk~sIe~~dr~l~VlsEKLnshl~LFdSIe 144 (358)
.+...+....+.+.++..||-++|
T Consensus 429 --------a~~~~~~a~~~~~~a~v~L~~alG 452 (454)
T TIGR01845 429 --------AQRSLATLQARRLSDSVALYKALG 452 (454)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233344455555666666666554
No 290
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.56 E-value=78 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=12.8
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHH
Q 040671 66 CQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
+++++.++..++.+|..|......|
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 291
>PF13166 AAA_13: AAA domain
Probab=27.29 E-value=7.2e+02 Score=25.83 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=15.6
Q ss_pred HhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhh
Q 040671 176 NLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNA 212 (358)
Q Consensus 176 ~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~ 212 (358)
.+......+..++..++.-+...+..+..|+.+=...
T Consensus 435 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 435 KAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444444444433
No 292
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.17 E-value=1.2e+03 Score=28.21 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhHHHHHH-hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHH
Q 040671 33 EIHLLVQKQKRNEEEYSR-NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYREN 103 (358)
Q Consensus 33 E~~~~iQk~K~~EEe~~R-e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~ 103 (358)
|+...+-+.|-.+-+..| +..=+|.+.....+-...+|.+..-|++++.+++..-+.++....++.++-+-
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555666656655554 44445666666666666666666666666666666555555555555444433
No 293
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.08 E-value=6.9e+02 Score=27.57 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccc
Q 040671 33 EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQND 79 (358)
Q Consensus 33 E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lene 79 (358)
++...+.+..+...+...+.++++...+......++||.+.+.|+.+
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555556666666666666666666666555543
No 294
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=26.86 E-value=2.1e+02 Score=29.17 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=48.0
Q ss_pred hHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh-hh---hhhhhhhhHHHHHhhhhHHHHHHhhhh
Q 040671 115 MKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP-YL---QKTLSAKDVVIQNLISEKEALHLEVGK 190 (358)
Q Consensus 115 mk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv-~L---qKsllvKD~~I~~L~sekqAl~~El~~ 190 (358)
|-+.++..|+-.-..+.++.+-..-.+.+..++.. .+-..|+.+| .+ ++.||. .+=.+--.+.+.|-.+++.
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~tee--lIr~rVrq~V~hVqaqEreLLe--~v~~rYqR~y~ema~~L~~ 79 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEE--LIRARVRQVVAHVQAQERELLE--AVEARYQRDYEEMAGQLGR 79 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhH
Confidence 44455555555555556666555555555555432 1122333333 12 134441 2333466788999999999
Q ss_pred HHHHHHHHHHH
Q 040671 191 LGIILQRIQDA 201 (358)
Q Consensus 191 leiiLqrfQd~ 201 (358)
|+.+||||.-.
T Consensus 80 LeavLqRir~G 90 (324)
T PF12126_consen 80 LEAVLQRIRTG 90 (324)
T ss_pred HHHHHHHHHhH
Confidence 99999999743
No 295
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=26.75 E-value=7.7e+02 Score=26.62 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=50.0
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATE-EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sare-E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
++|--=|-+=|+=+|.=|||||.... |-+.+-..++-|. |-.--+-||=..|-.+.++..--+.+---.|.||+.+-+
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTA-EAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~k 462 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTA-EAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKK 462 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554455555556666778887764 4433333334433 334455666666666667666666677777777776655
Q ss_pred hHHHHHH
Q 040671 86 KQKELKE 92 (358)
Q Consensus 86 n~keLK~ 92 (358)
....||.
T Consensus 463 qiekLK~ 469 (488)
T PF06548_consen 463 QIEKLKR 469 (488)
T ss_pred HHHHHHH
Confidence 5555543
No 296
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.70 E-value=4.5e+02 Score=23.29 Aligned_cols=16 Identities=31% Similarity=0.198 Sum_probs=7.3
Q ss_pred cHHHHHHHHhhhhhhc
Q 040671 62 TNELCQKLERKVSYLQ 77 (358)
Q Consensus 62 ~~E~~qkLE~kIk~Le 77 (358)
..+....++.+|.-+.
T Consensus 118 ~r~e~~~~~~ki~e~~ 133 (177)
T PF07798_consen 118 IREEQAKQELKIQELN 133 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555544433
No 297
>PRK12705 hypothetical protein; Provisional
Probab=26.48 E-value=8e+02 Score=26.15 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=7.0
Q ss_pred hccchHHHHHhHHHHHH
Q 040671 76 LQNDNALLENKQKELKE 92 (358)
Q Consensus 76 Lenen~~LEkn~keLK~ 92 (358)
|++..+.|+++++.|..
T Consensus 93 l~~~~~~l~~~~~~l~~ 109 (508)
T PRK12705 93 LDARAEKLDNLENQLEE 109 (508)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 298
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=26.47 E-value=10 Score=26.62 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=26.2
Q ss_pred ccceeeccCCC-CcccchhhhchhhhccCcccccccc
Q 040671 322 DTCVVSAHHPD-SECSMTQAETSKESRLNSNAAFQFH 357 (358)
Q Consensus 322 ~~~~~~~hh~d-secs~tqaets~~~~~~~~~~~~~~ 357 (358)
.+..-.++-|| |.|. ||++|-++-.-|...|+..|
T Consensus 10 ~~~~y~~~~pdlpg~~-t~G~t~eea~~~~~eal~~~ 45 (48)
T PF03681_consen 10 EDGGYVAYFPDLPGCF-TQGDTLEEALENAKEALELW 45 (48)
T ss_dssp TSSSEEEEETTCCTCE-EEESSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCccChh-hcCCCHHHHHHHHHHHHHHH
Confidence 55667888999 6888 89999888776665555544
No 299
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.45 E-value=1.8e+02 Score=32.40 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=45.1
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchH-----HHHHhHHHH----------------HHHHHHHHHhhHHHHHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNA-----LLENKQKEL----------------KETINRLLQYRENFLSA 107 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~-----~LEkn~keL----------------K~ti~~LLQSRE~Fi~~ 107 (358)
.-|.-=||.|+-++.-+--|||.+|+-||.|.. ++++.++.+ .-.|..+|--| +.
T Consensus 335 ~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeR----Nq 410 (832)
T KOG2077|consen 335 TCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMER----NQ 410 (832)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHH----hH
Confidence 334445788888888888888888888877753 333333332 23578888888 45
Q ss_pred HhhhhhhhHhhhhh
Q 040671 108 YEESTCDMKRAIET 121 (358)
Q Consensus 108 Ye~stcemk~sIe~ 121 (358)
|++--++|+-+|.-
T Consensus 411 YKErLMELqEavrW 424 (832)
T KOG2077|consen 411 YKERLMELQEAVRW 424 (832)
T ss_pred HHHHHHHHHHHHhH
Confidence 77777777655543
No 300
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=26.40 E-value=1.1e+02 Score=23.12 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=23.0
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
|-..+.-.+.+|.......++|++-|.+||.
T Consensus 5 L~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 5 LISLLKKQEEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556677777788888888888888885
No 301
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.23 E-value=1.7e+02 Score=31.12 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=24.1
Q ss_pred HhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 42 KRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 42 K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
+.+-+++..++.||+.+|++-.-..+.+.+...-+|...+.||...+.|+.++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666655422222222444444444444444444444443
No 302
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.23 E-value=5.1e+02 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=9.7
Q ss_pred hhhcchhhHHHHHhhhhhhh
Q 040671 119 IETRDRKLTVLHEKINSHLT 138 (358)
Q Consensus 119 Ie~~dr~l~VlsEKLnshl~ 138 (358)
|+...+.+.++.+.+|+.++
T Consensus 137 i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333444555555555554
No 303
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=26.17 E-value=7.8e+02 Score=25.85 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=55.9
Q ss_pred HHHhHHHHH-HHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhccccc
Q 040671 83 LENKQKELK-ETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVE 158 (358)
Q Consensus 83 LEkn~keLK-~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq 158 (358)
..+..+++. ..++.||+-+...+..+++ -++..+...-+...-+-+.|+.-+-+--+..+||-..+.+|.+.+
T Consensus 118 ~~~~~~el~~~~~~~Ll~~~~~~~e~f~e---~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~k 191 (448)
T COG1322 118 LNRRLAELNQQNLKQLLKPLREVLEKFRE---QLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNK 191 (448)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344556666 6778888888888887776 345556666667777788888889999999999999999988744
No 304
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.07 E-value=5.5e+02 Score=28.12 Aligned_cols=88 Identities=17% Similarity=0.346 Sum_probs=47.1
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLT 127 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~ 127 (358)
..++..+|.++|+....-.+.|...|+-++.+++.-|-..+...+.+.. ++.|...+.+|. ..|+..+.|=.-+
T Consensus 77 ~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~-~~~k~~LL~Ay~-q~c~~~~~~l~e~---- 150 (632)
T PF14817_consen 77 EARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISD-SRHKQLLLEAYS-QQCEEQRRILREY---- 150 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHH----
Confidence 3334555666666555555566666666666665555544444444444 355667777775 4566554443222
Q ss_pred HHHHhhhhhhhhhhhh
Q 040671 128 VLHEKINSHLTLFDSI 143 (358)
Q Consensus 128 VlsEKLnshl~LFdSI 143 (358)
+-||+-|+.=+.-|
T Consensus 151 --~~rl~~~~~~~q~~ 164 (632)
T PF14817_consen 151 --TKRLQGQVEQLQDI 164 (632)
T ss_pred --HHHHHHHHHHHHHH
Confidence 44455554444433
No 305
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=26.00 E-value=3.9e+02 Score=22.24 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHhcC
Q 040671 188 VGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 188 l~~leiiLqrfQd~~s~m~ 206 (358)
+..+..++..|++.+..++
T Consensus 103 ~~~v~~~~d~~~e~~e~~~ 121 (171)
T PF03357_consen 103 LDKVEKLMDDFQEEMEDQD 121 (171)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4577777888888777765
No 306
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.81 E-value=2.5e+02 Score=28.21 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 040671 13 LQALIAETRH 22 (358)
Q Consensus 13 LqaLisEvR~ 22 (358)
++.|-.+++.
T Consensus 336 ~~~l~~~~~~ 345 (451)
T PF03961_consen 336 LEELEEELEE 345 (451)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 307
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.70 E-value=3.3e+02 Score=29.20 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=34.2
Q ss_pred hhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHH
Q 040671 59 LASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFL 105 (358)
Q Consensus 59 las~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi 105 (358)
.....+..+.++.|+.-||...+.+.+.+..|+..++.|-.+|+...
T Consensus 373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 33445566777777777777777788888888888888877776544
No 308
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.60 E-value=5.2e+02 Score=23.60 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=8.5
Q ss_pred HHHHHhhhhhhccchHHHHHh
Q 040671 66 CQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn 86 (358)
|.++-.++..|+.++..|.+.
T Consensus 105 R~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 309
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.51 E-value=3.7e+02 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHH
Q 040671 46 EEYSRNLKELQSELASTNELCQKLE 70 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE 70 (358)
.++..++.+||.++.+....++.|-
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl 81 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALL 81 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777666666666663
No 310
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.37 E-value=4.1e+02 Score=22.29 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
...+...|+.|+..+..++..|++ +|++|...+..-.+.|.+||-
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~-------eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALER-------ENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 334445566666665566665544 677777777777777777774
No 311
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.24 E-value=7.3e+02 Score=29.36 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhH------------------------------HHHHHHHHHHHhhHHHHHHhHHHH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSAT------------------------------EEIHLLVQKQKRNEEEYSRNLKEL 55 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sar------------------------------eE~~~~iQk~K~~EEe~~Re~~EL 55 (358)
|++.+-..++|+.|--.++.|=..++ +.+-..|+--++.+.-...++.++
T Consensus 344 L~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~ 423 (1200)
T KOG0964|consen 344 LSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDL 423 (1200)
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q ss_pred HHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHH
Q 040671 56 QSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYREN 103 (358)
Q Consensus 56 qaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~ 103 (358)
.+++-+.++-.++|+.-|.-..-.++.+-.+-.++|.-...+..-|..
T Consensus 424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~ 471 (1200)
T KOG0964|consen 424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE 471 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 312
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.20 E-value=5.2e+02 Score=23.43 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 63 NELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 63 ~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..-.+.|..+|.-||.+|.+|+.+-+++.++...|
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rl 122 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRL 122 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 34456788889999999999998888887776553
No 313
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.04 E-value=2.3e+02 Score=23.19 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 63 NELCQKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 63 ~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
.+.+-+.+.+...|+--|.-+-...+..-++|.++|
T Consensus 52 a~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 52 AQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444444
No 314
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.00 E-value=1.2e+02 Score=22.47 Aligned_cols=29 Identities=38% Similarity=0.583 Sum_probs=14.3
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+.+.|.-|+++++.+.++..+|+..++.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555555544
No 315
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.83 E-value=9.7e+02 Score=26.47 Aligned_cols=17 Identities=6% Similarity=-0.275 Sum_probs=8.6
Q ss_pred hccccceeeeccccccc
Q 040671 308 STNILMRISAKDVKDTC 324 (358)
Q Consensus 308 ~~n~~~~is~~~~k~~~ 324 (358)
-.+|+..+-+--||-++
T Consensus 718 ~~~g~~~v~IIHGkGtG 734 (771)
T TIGR01069 718 LLAGYEVVLIIHGKGSG 734 (771)
T ss_pred HHCCCCEEEEEcCCChh
Confidence 34455555555555544
No 316
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.78 E-value=2.7e+02 Score=20.71 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=7.7
Q ss_pred hhhhhccchHHHHHhHHHHHH
Q 040671 72 KVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 72 kIk~Lenen~~LEkn~keLK~ 92 (358)
.|..||.....|+..-..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 317
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=24.73 E-value=4.1e+02 Score=22.09 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=0.7
Q ss_pred HHHhhh
Q 040671 106 SAYEES 111 (358)
Q Consensus 106 ~~Ye~s 111 (358)
++|+.+
T Consensus 85 ~al~~~ 90 (171)
T PF03357_consen 85 KALKQS 90 (171)
T ss_dssp SS----
T ss_pred HHHHHH
Confidence 333333
No 318
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.52 E-value=2.6e+02 Score=28.37 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=15.6
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
|-.+++-|-++...||+..+++...+..++.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555444
No 319
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.39 E-value=1.2e+02 Score=24.26 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=11.8
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhh
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYL 76 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~L 76 (358)
.+++.|+.+++..++.+..++.+++.|
T Consensus 77 ~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 77 EELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444443
No 320
>PRK00295 hypothetical protein; Provisional
Probab=24.39 E-value=2.4e+02 Score=22.10 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+-+|...+|.-+++...|=.-|--.+.+...|++..+.|...+..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888888888888888777777777777777777777766653
No 321
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.32 E-value=3e+02 Score=27.21 Aligned_cols=9 Identities=33% Similarity=0.261 Sum_probs=3.9
Q ss_pred CCCCccccc
Q 040671 282 NNFSSCVPE 290 (358)
Q Consensus 282 ~~~~sc~pe 290 (358)
+.-++.+|+
T Consensus 253 ~~~~sa~~~ 261 (265)
T COG3883 253 AAQPSAVTE 261 (265)
T ss_pred ccccccccc
Confidence 333444444
No 322
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.31 E-value=2.4e+02 Score=22.05 Aligned_cols=43 Identities=19% Similarity=0.454 Sum_probs=31.8
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
..||+++.-++....-+++...+++.+++.+=+.=...+.-||
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777777777788887777777666677776
No 323
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.24 E-value=1.4e+02 Score=28.95 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhhhhhHH
Q 040671 132 KINSHLTLFDSIEKEAF 148 (358)
Q Consensus 132 KLnshl~LFdSIekEa~ 148 (358)
||.+=..|.++.+.|-.
T Consensus 278 kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 278 KLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHHHHCCHHHHH
T ss_pred hhccHHHHHhhhcchhh
Confidence 34444445555555443
No 324
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.83 E-value=1.3e+02 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=30.5
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
..+||..-|++||++|+.....|.....++...+..|-
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988888888888877777777664
No 325
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=23.78 E-value=2.6e+02 Score=29.43 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=37.1
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccc
Q 040671 35 HLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQND 79 (358)
Q Consensus 35 ~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lene 79 (358)
+..+.+|++.=.+.+|.+++++++...+..+.+-+++.+.++|.-
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq 434 (451)
T PRK13723 390 EAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQ 434 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888999999999999998888888888888777643
No 326
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.60 E-value=1.8e+02 Score=28.49 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=19.5
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhh
Q 040671 77 QNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIET 121 (358)
Q Consensus 77 enen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~ 121 (358)
.+++..+.+++..|+..++.+ +++++.|..+-.++..-|+.
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~----~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDL----ENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHhHHHHHHH
Confidence 334444444444444444443 45555555444444444444
No 327
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.54 E-value=2.9e+02 Score=27.84 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHh
Q 040671 63 NELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEK 132 (358)
Q Consensus 63 ~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEK 132 (358)
=++..+|..++.-|+-+|+.|+.-.+.+..+++.+..-++.|=..+- .|=+.||.||
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~-------------~KF~~vLNeK 192 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLY-------------AKFVLVLNEK 192 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhH
Confidence 34445555566666667777777777777777777666666544332 3456676666
No 328
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.48 E-value=3.7e+02 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhcHHHHHHH
Q 040671 40 KQKRNEEEYSRNLKELQSELASTNELCQKL 69 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas~~E~~qkL 69 (358)
++-.++-.++--+..||+.+......+..|
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333333333
No 329
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.44 E-value=6.4e+02 Score=23.85 Aligned_cols=58 Identities=17% Similarity=0.364 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHH
Q 040671 45 EEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFL 105 (358)
Q Consensus 45 EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi 105 (358)
..+++++..+|......-......+|..|.-|-.+ .++.....+..++.++.-|+.-.
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~ 82 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAY 82 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHH
Confidence 44556666666666666666666667666655433 33334445666777777776543
No 330
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=23.42 E-value=2.7e+02 Score=20.11 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=29.0
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.|..+-..-|....++|.....=..+...|-+.-=.||+.|..+++
T Consensus 3 ~L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 3 RLFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556666667777777654455566666767788888888875
No 331
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=23.38 E-value=5.7e+02 Score=23.28 Aligned_cols=122 Identities=19% Similarity=0.303 Sum_probs=66.1
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchh
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRK 125 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~ 125 (358)
+..++++.+++.+++..-+...+||.+-...-+.....-++-.. =|.+..-++|+.+. +++ -.
T Consensus 30 ~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~---------ysE~dik~AYe~A~-~lQ-------~~ 92 (159)
T PF05384_consen 30 ERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR---------YSEEDIKEAYEEAH-ELQ-------VR 92 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------cCHHHHHHHHHHHH-HHH-------HH
Confidence 34455666666666666555555554444333333322222110 03344556777533 222 14
Q ss_pred hHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHhhhhH
Q 040671 126 LTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLEVGKL 191 (358)
Q Consensus 126 l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~El~~l 191 (358)
++++-||--.-..-=|.+|.-...++.++.....|| -+- .+++.|+++.+.+..-++++
T Consensus 93 L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~-------vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 93 LAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIG-------VVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHH
Confidence 566666666656666777777777777776666665 232 56677777766665555443
No 332
>PF14992 TMCO5: TMCO5 family
Probab=23.34 E-value=7.6e+02 Score=24.72 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=56.0
Q ss_pred HHHHhhHHHHHHhHHHHHHHhhh-----------cHHHHHHHHhhhhhhccchHHHHHhHHHHH---HHHHHHHHhhHHH
Q 040671 39 QKQKRNEEEYSRNLKELQSELAS-----------TNELCQKLERKVSYLQNDNALLENKQKELK---ETINRLLQYRENF 104 (358)
Q Consensus 39 Qk~K~~EEe~~Re~~ELqaElas-----------~~E~~qkLE~kIk~Lenen~~LEkn~keLK---~ti~~LLQSRE~F 104 (358)
-|.....+-..+.+++||.++.. ....++-.+.++..+..+.+-+|+.-..+. ..+..+.----.-
T Consensus 73 ~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~ 152 (280)
T PF14992_consen 73 AKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANE 152 (280)
T ss_pred HHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445667788777542 223344455555555555555555555542 2233333333344
Q ss_pred HHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhh
Q 040671 105 LSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSI 143 (358)
Q Consensus 105 i~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSI 143 (358)
++.|++ -+ +.|+. .+-+..|.-|+..+++.-+..
T Consensus 153 i~klkE---~L-~rmE~-ekE~~lLe~el~k~q~~~s~~ 186 (280)
T PF14992_consen 153 IKKLKE---KL-RRMEE-EKEMLLLEKELSKYQMQDSQS 186 (280)
T ss_pred HHHHHH---HH-HHHHH-HHHHHHHHHHHHHHhchhhch
Confidence 555655 23 66777 778888888888888874333
No 333
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=22.91 E-value=7.8e+02 Score=31.72 Aligned_cols=145 Identities=20% Similarity=0.280 Sum_probs=99.4
Q ss_pred HhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHH---HHHHhhhhhhhHhhhhhcchh---hHHHHHhhhhhhhhhhhh
Q 040671 70 ERKVSYLQNDNALLENKQKELKETINRLLQYRENF---LSAYEESTCDMKRAIETRDRK---LTVLHEKINSHLTLFDSI 143 (358)
Q Consensus 70 E~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~F---i~~Ye~stcemk~sIe~~dr~---l~VlsEKLnshl~LFdSI 143 (358)
++.+--+++.|.--.+++..-+++|-.|++-.++| |.-|+.-..-|+|-|+.-+.- |.=+.+||+.=-.-|.-+
T Consensus 2300 ~~~l~~ie~~nn~e~~nv~~y~e~it~L~~r~~~l~ndv~~~~~e~n~~~~~~~~~~~~n~~I~kik~~l~~t~~~f~~i 2379 (2722)
T PTZ00440 2300 IGDLYKLEDTNNDELKKVKLYIENITHLLNRINTLINDLDNYQDENYGKDKNIELNNENNSYIIKTKEKINNLKEEFSKL 2379 (2722)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhcccchhHHHHHHHHHHHhhHHHHHHH
Confidence 34445668888888899999999999999988875 667999999999999987765 666666665433333221
Q ss_pred ----------------------------------------hhhHHHHhhhcccccchh-h-----------------h--
Q 040671 144 ----------------------------------------EKEAFSIKQVVDNVECVP-Y-----------------L-- 163 (358)
Q Consensus 144 ----------------------------------------ekEa~svKqvld~vq~lv-~-----------------L-- 163 (358)
+-+...|..-|.++..++ + |
T Consensus 2380 l~~I~en~~l~~nn~ik~~I~~i~~~v~~~K~~fs~dL~e~ekL~qI~~~l~eIk~~~~Ei~~~~~i~~~~~~i~~~i~~ 2459 (2722)
T PTZ00440 2380 LKNIKRNNTLCNNNNIKDFISNIGKSVETIKQRFSSNLPEKEKLHQIEENLNEIKNIMNETKRISNVDAFTNKILQDIDN 2459 (2722)
T ss_pred HHHHHHhHHHhhchhHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 112222222222222222 0 0
Q ss_pred h-------hhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhh
Q 040671 164 Q-------KTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALM 218 (358)
Q Consensus 164 q-------KsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~ 218 (358)
| .....=|.+|+.+++++.....++..+..+|.|+....+.|+ +.|..++.
T Consensus 2460 ~~~ki~n~~n~~~Id~~i~~I~~~n~e~~~~l~~i~~~l~~v~~~~~~m~----~~~~~is~ 2517 (2722)
T PTZ00440 2460 EKNKENNNMNAEKIDDLIENVTSHNEKIKSELLIINDALRRVKEKKDEMN----KLFNSLTE 2517 (2722)
T ss_pred HHHHhcccccHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHhcc
Confidence 0 122223778999999999999999999999999999999987 46665543
No 334
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.34 E-value=2.5e+02 Score=28.04 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred hhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHH
Q 040671 43 RNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELK 91 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK 91 (358)
+.-+....++.+|.+.++... |..++++-++...+.++++.++++
T Consensus 249 ~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 249 EKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443 445555555555555555544443
No 335
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.25 E-value=2.9e+02 Score=24.97 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHH---HHHHhHHHHHHHhhh
Q 040671 9 FKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEE---EYSRNLKELQSELAS 61 (358)
Q Consensus 9 fklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EE---e~~Re~~ELqaElas 61 (358)
++.-.+...++.-.||..=.+.+.|+..+.+.-+--++ ...+|+..||.++..
T Consensus 52 ~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445566677778887777777777777665544333 344555555555543
No 336
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.21 E-value=6.2e+02 Score=24.07 Aligned_cols=20 Identities=5% Similarity=0.307 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHhcChh
Q 040671 189 GKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 189 ~~leiiLqrfQd~~s~m~~E 208 (358)
.|++++++.|..++...|=+
T Consensus 139 ~Gv~mi~kql~~vL~k~GVe 158 (211)
T PRK14160 139 KGIEMTVKQFKTSLEKLGVE 158 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCE
Confidence 49999999999999887754
No 337
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.19 E-value=6.9e+02 Score=26.96 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHH-HHHhhh
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTV-LHEKIN 134 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~V-lsEKLn 134 (358)
+-+.|+....+-++.+|..|-+|+--..+.++-+-+.-..++.+|++.-=+|+- |.||=|... ..+||+
T Consensus 389 ~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqE--QlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 389 TKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQE--QLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHheehhhhhhhh
Confidence 334445555555556677777888777777777777777777777766555552 445533221 245665
No 338
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.99 E-value=6.9e+02 Score=23.75 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHhcChhhh
Q 040671 188 VGKLGIILQRIQDAIATMNQEDN 210 (358)
Q Consensus 188 l~~leiiLqrfQd~~s~m~~E~~ 210 (358)
+.|+++|++.|..++...|=+-+
T Consensus 133 ~eGvemi~k~l~~vL~k~GVe~I 155 (208)
T PRK14154 133 RDGMSLTLDLLHNTLAKHGVQVI 155 (208)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEe
Confidence 37899999999999988775543
No 339
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.97 E-value=6.2e+02 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=24.0
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 73 VSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
+.-|+.+.+.|++..+++|..+..+.---++|.+..+
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556677777777777777777777776655
No 340
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.81 E-value=4.1e+02 Score=21.04 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=27.4
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.++.|+.|--.--....++..-|+-|-..+..+|+...+++..+..+..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444444555566666666666666666666655555443
No 341
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=21.43 E-value=5.7e+02 Score=27.64 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=39.5
Q ss_pred HHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 57 SELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 57 aElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
+....--+-++.|=.+..-.+.+...++...++++++|..|=+--++--.-||+
T Consensus 434 SKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~ 487 (518)
T PF10212_consen 434 SKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE 487 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333334456666666777777777778888888888888888888888888886
No 342
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.39 E-value=2.2e+02 Score=26.95 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=37.5
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHH
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKE 54 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~E 54 (358)
-.++.||..|=.||+.||..=-...-++....+||+.---+.++..+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366889999999999999777777778888888888777676665553
No 343
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.26 E-value=5.8e+02 Score=22.59 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=49.1
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLT 127 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~ 127 (358)
|...++.++.+....-+-.......+.-|.......+.+-+.|...=+.||.-.. ++.
T Consensus 5 y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~----------------------~L~ 62 (157)
T PF04136_consen 5 YLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQT----------------------RLE 62 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------------------HHH
Confidence 3344444444443333333444444555666677777777777777777776653 444
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHhhh
Q 040671 128 VLHEKINSHLTLFDSIEKEAFSIKQV 153 (358)
Q Consensus 128 VlsEKLnshl~LFdSIekEa~svKqv 153 (358)
.+.|.|.+.|.-|+.++.=...+..+
T Consensus 63 ~~ae~I~~~L~yF~~Ld~itr~Ln~p 88 (157)
T PF04136_consen 63 ELAEEISEKLQYFEELDPITRRLNSP 88 (157)
T ss_pred HHHHHHHHHhHHHhhHHHHHHHHcCC
Confidence 55566777777777766644444444
No 344
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=21.25 E-value=4.4e+02 Score=27.71 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=33.1
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 36 LLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 36 ~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
...+..+..++-..+....+.....+..+.+++|+-++ .+|=+.-++||..|+.-|-.|
T Consensus 439 ~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL-------~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 439 ESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL-------DALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555544443 455667777777777766544
No 345
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.14 E-value=4.4e+02 Score=21.11 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=4.7
Q ss_pred HHHHHHHhhhcHH
Q 040671 52 LKELQSELASTNE 64 (358)
Q Consensus 52 ~~ELqaElas~~E 64 (358)
+.++..++....+
T Consensus 76 ~~~lk~~i~~le~ 88 (108)
T PF02403_consen 76 VKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 346
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.11 E-value=1.2e+02 Score=27.17 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhhhcH---------HHHHHHHhhhhhhc
Q 040671 46 EEYSRNLKELQSELASTN---------ELCQKLERKVSYLQ 77 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~---------E~~qkLE~kIk~Le 77 (358)
+..+.|+..|+++++.+. +.+..+|+||.||+
T Consensus 37 ~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLA 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHH
No 347
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=21.07 E-value=1.4e+02 Score=30.31 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=10.2
Q ss_pred HHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhh
Q 040671 56 QSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINS 135 (358)
Q Consensus 56 qaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLns 135 (358)
+..|..-.|-+.+||..+.-|......|......|...|+++--+ |..---.|.-|+-+|..
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~s------------------l~~~~s~L~sLsstV~~ 88 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASS------------------LADMTSELNSLSSTVTS 88 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888888888888888887766422 22222345556677888
Q ss_pred hhhhhhhhhhhHHHHhhhcccccchh-hhhhhhhhhhHHHHHhhhhHHHHHHhhh
Q 040671 136 HLTLFDSIEKEAFSIKQVVDNVECVP-YLQKTLSAKDVVIQNLISEKEALHLEVG 189 (358)
Q Consensus 136 hl~LFdSIekEa~svKqvld~vq~lv-~LqKsllvKD~~I~~L~sekqAl~~El~ 189 (358)
+..-.+++...+......+++++.-+ -||..+.+=--.|.||.++.-++-.=|-
T Consensus 89 lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~It 143 (326)
T PF04582_consen 89 LQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNIT 143 (326)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHh
Confidence 88888889999998888888877655 4554333332334444444444333333
No 348
>PRK04406 hypothetical protein; Provisional
Probab=21.06 E-value=4.2e+02 Score=21.21 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
....+-+|...+|.-+++...|=.-|--.+.+...|.+..+-|...+..+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456778888888888888888777777777777777777777666553
No 349
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.81 E-value=2.7e+02 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=29.0
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
...-.||.+|+-||+.|...+..|+..+..|-+..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788999999999999999999998886654
No 350
>PLN02678 seryl-tRNA synthetase
Probab=20.69 E-value=4.9e+02 Score=27.06 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=8.9
Q ss_pred HHHHhHHHHHHHHHHHHHh
Q 040671 82 LLENKQKELKETINRLLQY 100 (358)
Q Consensus 82 ~LEkn~keLK~ti~~LLQS 100 (358)
.|-...++||..|..|-..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~ 93 (448)
T PLN02678 75 ELIAETKELKKEITEKEAE 93 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555555544333
No 351
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=20.67 E-value=9.1e+02 Score=24.63 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
.|+.+-.-|.-||..-++.-..|+--++.|+++=.-+-++|..
T Consensus 162 eLl~~K~~Ll~di~~k~~~l~sl~p~L~tl~kas~PVqe~l~i 204 (303)
T KOG2216|consen 162 ELLSRKAALLSDIKAKKNRLQSLDPKLQTLLKASLPVQEYLGI 204 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhhhhHHHHhcc
Confidence 3444444444566666666666666677777666666666654
No 352
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.66 E-value=6.6e+02 Score=23.00 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHhcChhh
Q 040671 188 VGKLGIILQRIQDAIATMNQED 209 (358)
Q Consensus 188 l~~leiiLqrfQd~~s~m~~E~ 209 (358)
+.|+++|++.|..++...|=+-
T Consensus 101 ~~Gv~mi~k~l~~~L~k~Gv~~ 122 (176)
T PRK14151 101 REGVELTLKMFQDTLKRYQLEA 122 (176)
T ss_pred HHHHHHHHHHHHHHHHHCCCEE
Confidence 5789999999999988776543
No 353
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=20.64 E-value=5.8e+02 Score=22.31 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH-HHHHHHHHHHH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQ-KELKETINRLL 98 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~-keLK~ti~~LL 98 (358)
..+...|++...+.......+...++.|++.++.|..-. ++++.-+.-||
T Consensus 40 ~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL 90 (136)
T PF04871_consen 40 EAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLL 90 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334556666555566666677777777777777765322 34444444443
No 354
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.52 E-value=6e+02 Score=22.47 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
.+++..|+-|..+.+..|+....||.+.++|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666666553
No 355
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=20.35 E-value=4.1e+02 Score=27.22 Aligned_cols=56 Identities=29% Similarity=0.469 Sum_probs=41.5
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
.++.++++.||+.+ ..|-.+..| |.++.-...+..|+.++..+||+=-+|.--|+.
T Consensus 178 s~~sk~Lq~lqq~v-------~~Lask~~y--~pd~~~~e~~~~Lr~~L~tflq~~~~F~~~Y~~ 233 (325)
T PF06694_consen 178 SELSKQLQSLQQQV-------AELASKHPY--NPDEEYVEKESQLRLELETFLQTAAGFNHCYEK 233 (325)
T ss_pred HHHHHHHHHHHHHH-------HHHHhcCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555544 457788888 555555567777999999999999999999985
No 356
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.33 E-value=6.3e+02 Score=25.67 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=4.0
Q ss_pred HHHHHHHhhh
Q 040671 16 LIAETRHLKE 25 (358)
Q Consensus 16 LisEvR~LRe 25 (358)
|..|...|.+
T Consensus 9 L~~efq~Lqe 18 (330)
T PF07851_consen 9 LQKEFQELQE 18 (330)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 357
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=20.21 E-value=1.8e+02 Score=26.44 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=41.6
Q ss_pred hhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhH
Q 040671 59 LASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMK 116 (358)
Q Consensus 59 las~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk 116 (358)
|.+-+-.-..+.++|.-|+ +.+||.+.+||.---.+|--=.-|++-...-+|.|-
T Consensus 82 vqaL~S~G~sl~~kVtSLe---a~lEkqqQeLkAdhS~lllhvk~~~~DLr~LsCQma 136 (138)
T PF03954_consen 82 VQALSSQGGSLQDKVTSLE---AKLEKQQQELKADHSTLLLHVKQFPKDLRSLSCQMA 136 (138)
T ss_pred HHHHHhccccHHhHcccHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3333333444666777776 568999999999888888888899999999999884
No 358
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.19 E-value=3.8e+02 Score=28.62 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=8.0
Q ss_pred CCCCCcCCCCcC
Q 040671 252 SKASSLTAPENR 263 (358)
Q Consensus 252 ~kassm~~~EN~ 263 (358)
..-|.-+.|||+
T Consensus 231 ~~~pvYTiP~NS 242 (472)
T TIGR03752 231 KARPVYTIPENS 242 (472)
T ss_pred ccceeEecCCCC
Confidence 334677777777
No 359
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.13 E-value=3.9e+02 Score=20.17 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=32.7
Q ss_pred HHHHhHHHHH-----HHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 47 EYSRNLKELQ-----SELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 47 e~~Re~~ELq-----aElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
++........ +++.....-+..|+..|..++.....+++........+..-.+-+
T Consensus 30 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 30 EYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445 556666677777888888877777777777766665555544444
Done!