Query 040671
Match_columns 358
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 17:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.2 0.37 1.3E-05 38.9 20.8 51 47-97 59-109 (284)
2 1c1g_A Tropomyosin; contractIl 94.7 1.4 4.6E-05 35.6 21.0 54 49-102 54-107 (284)
3 3na7_A HP0958; flagellar bioge 94.7 2.3 7.7E-05 37.9 17.2 177 11-220 11-188 (256)
4 1i84_S Smooth muscle myosin he 93.8 0.086 2.9E-06 56.1 6.8 41 54-94 931-971 (1184)
5 3oja_B Anopheles plasmodium-re 93.7 0.3 1E-05 46.4 9.6 35 103-137 551-585 (597)
6 3na7_A HP0958; flagellar bioge 93.4 3 0.0001 37.2 15.0 30 66-95 92-121 (256)
7 1i84_S Smooth muscle myosin he 93.0 0.21 7.2E-06 53.2 8.0 23 70-92 912-934 (1184)
8 2v66_B Nuclear distribution pr 92.1 1.1 3.8E-05 37.4 9.7 77 20-96 5-81 (111)
9 3oja_B Anopheles plasmodium-re 89.2 4.8 0.00016 38.3 12.4 17 12-28 457-473 (597)
10 4hpq_C ATG17, KLTH0D15642P; au 88.9 5.9 0.0002 38.9 13.1 129 73-208 237-365 (413)
11 2dfs_A Myosin-5A; myosin-V, in 87.8 4.8 0.00017 43.3 12.6 28 172-199 1023-1050(1080)
12 1x79_B RAB GTPase binding effe 87.6 6 0.00021 33.1 10.5 80 16-105 11-90 (112)
13 2dfs_A Myosin-5A; myosin-V, in 86.5 8.5 0.00029 41.4 13.7 97 40-161 950-1046(1080)
14 2v71_A Nuclear distribution pr 86.4 8.4 0.00029 34.6 11.5 78 19-96 57-134 (189)
15 2w83_C C-JUN-amino-terminal ki 86.2 0.68 2.3E-05 37.0 3.9 38 174-211 39-76 (77)
16 1fxk_A Prefoldin; archaeal pro 82.4 13 0.00046 28.2 9.7 37 61-97 62-98 (107)
17 1zxa_A CGMP-dependent protein 81.2 1.3 4.5E-05 34.2 3.5 42 162-203 15-56 (67)
18 2zqm_A Prefoldin beta subunit 80.3 8.1 0.00028 29.9 7.9 82 8-97 3-103 (117)
19 3ghg_A Fibrinogen alpha chain; 79.2 7.1 0.00024 40.2 9.0 86 12-98 50-144 (562)
20 3hnw_A Uncharacterized protein 77.9 15 0.00052 30.9 9.4 59 38-96 77-135 (138)
21 4dnd_A Syntaxin-10, SYN10; str 77.7 13 0.00046 31.0 8.9 64 47-118 64-127 (130)
22 3q8t_A Beclin-1; autophagy, AT 77.7 12 0.00043 29.7 8.3 51 35-85 45-95 (96)
23 3he4_A Synzip6; heterodimeric 76.7 2.2 7.4E-05 31.9 3.4 43 55-97 8-50 (56)
24 2oqq_A Transcription factor HY 76.2 3.1 0.0001 30.0 3.9 21 66-86 19-39 (42)
25 2v71_A Nuclear distribution pr 75.6 37 0.0013 30.4 11.6 75 37-114 11-85 (189)
26 3qh9_A Liprin-beta-2; coiled-c 74.1 12 0.0004 30.2 7.2 56 14-73 22-77 (81)
27 2i1j_A Moesin; FERM, coiled-co 73.1 5 0.00017 40.2 6.0 62 36-101 339-400 (575)
28 3nmd_A CGMP dependent protein 72.1 5.8 0.0002 31.1 4.9 45 52-96 21-65 (72)
29 4dyl_A Tyrosine-protein kinase 71.1 70 0.0024 30.1 17.6 73 177-251 321-398 (406)
30 3s4r_A Vimentin; alpha-helix, 68.9 41 0.0014 26.6 9.4 29 172-200 63-91 (93)
31 1zhc_A Hypothetical protein HP 68.8 12 0.00043 28.5 6.1 63 33-100 4-66 (76)
32 1gmj_A ATPase inhibitor; coile 68.6 16 0.00053 29.5 6.8 63 30-97 15-77 (84)
33 2zqm_A Prefoldin beta subunit 67.5 13 0.00043 28.7 6.0 90 4-100 13-113 (117)
34 2wt7_A Proto-oncogene protein 67.5 13 0.00046 27.2 5.8 34 64-97 23-56 (63)
35 1t2k_D Cyclic-AMP-dependent tr 67.2 15 0.00052 26.5 6.0 33 65-97 23-55 (61)
36 3u59_A Tropomyosin beta chain; 66.3 46 0.0016 26.1 10.3 29 52-80 25-53 (101)
37 2avr_X Adhesion A; antiparalle 66.1 23 0.00078 30.0 7.7 89 68-160 6-104 (119)
38 3tnu_B Keratin, type II cytosk 63.8 21 0.00073 29.0 7.0 42 68-109 47-88 (129)
39 3a7p_A Autophagy protein 16; c 63.5 35 0.0012 30.0 8.6 30 51-80 97-126 (152)
40 2efr_A General control protein 62.5 77 0.0026 27.5 11.3 44 43-86 70-113 (155)
41 3tnu_A Keratin, type I cytoske 62.4 22 0.00075 29.1 6.8 45 66-110 47-91 (131)
42 3tnu_B Keratin, type II cytosk 59.0 70 0.0024 25.9 9.2 52 48-99 41-103 (129)
43 1jnm_A Proto-oncogene C-JUN; B 58.0 16 0.00053 26.6 4.7 34 64-97 22-55 (62)
44 3oja_A Leucine-rich immune mol 57.0 39 0.0013 31.6 8.3 65 34-98 412-476 (487)
45 1w33_A BbcrAsp-1; complement r 56.3 28 0.00097 31.2 6.9 68 63-137 99-167 (181)
46 3tnu_A Keratin, type I cytoske 55.9 82 0.0028 25.6 9.5 21 79-99 85-105 (131)
47 3mq9_A Bone marrow stromal ant 55.7 99 0.0034 28.7 10.8 27 67-93 432-458 (471)
48 3u1c_A Tropomyosin alpha-1 cha 54.9 77 0.0026 25.1 10.5 53 41-93 14-66 (101)
49 2jee_A YIIU; FTSZ, septum, coi 54.4 80 0.0027 25.1 8.7 20 5-24 7-26 (81)
50 3mov_A Lamin-B1; LMNB1, B-type 53.1 25 0.00086 28.1 5.5 50 70-119 11-60 (95)
51 3vkg_A Dynein heavy chain, cyt 53.0 4E+02 0.014 32.7 18.8 49 173-221 2050-2098(3245)
52 1m1j_C Fibrinogen gamma chain; 51.8 1.4E+02 0.0048 29.2 11.6 6 267-272 325-330 (409)
53 3oa7_A Head morphogenesis prot 51.1 12 0.00042 34.3 3.8 73 31-103 8-89 (206)
54 3u59_A Tropomyosin beta chain; 50.6 89 0.003 24.5 9.8 60 50-109 9-68 (101)
55 3qne_A Seryl-tRNA synthetase, 50.3 33 0.0011 34.3 7.0 26 73-98 80-105 (485)
56 1fxk_A Prefoldin; archaeal pro 50.3 26 0.0009 26.6 5.1 30 69-98 77-106 (107)
57 1ci6_A Transcription factor AT 48.9 22 0.00074 26.2 4.2 27 69-95 28-54 (63)
58 3nmd_A CGMP dependent protein 48.3 9.3 0.00032 30.0 2.2 37 166-202 34-70 (72)
59 2k48_A Nucleoprotein; viral pr 48.3 37 0.0013 28.5 6.0 44 64-117 53-96 (107)
60 1fxk_C Protein (prefoldin); ar 47.7 21 0.00071 28.5 4.3 39 61-99 85-123 (133)
61 2avr_X Adhesion A; antiparalle 47.2 1.3E+02 0.0045 25.4 11.5 73 38-110 29-103 (119)
62 2no2_A HIP-I, huntingtin-inter 46.9 1.1E+02 0.0039 24.7 8.8 46 43-88 47-92 (107)
63 3o0z_A RHO-associated protein 45.5 1.6E+02 0.0055 26.0 14.1 52 43-94 27-78 (168)
64 2w83_C C-JUN-amino-terminal ki 45.0 1.1E+02 0.0039 24.3 8.0 66 11-80 9-74 (77)
65 2b5u_A Colicin E3; high resolu 44.8 2.8E+02 0.0097 28.7 13.1 105 33-148 302-419 (551)
66 1wle_A Seryl-tRNA synthetase; 44.7 69 0.0024 31.9 8.3 32 68-99 120-151 (501)
67 1fio_A SSO1 protein; four heli 44.3 1E+02 0.0034 25.5 8.1 32 7-41 87-118 (196)
68 1ses_A Seryl-tRNA synthetase; 44.0 27 0.00091 33.7 5.1 37 64-100 64-100 (421)
69 4fi5_A Nucleoprotein; structur 44.0 45 0.0015 28.2 5.8 46 64-119 40-85 (113)
70 3hnw_A Uncharacterized protein 43.4 64 0.0022 27.1 6.8 42 47-88 93-134 (138)
71 1m1j_C Fibrinogen gamma chain; 42.2 2E+02 0.0068 28.2 10.9 99 31-134 22-129 (409)
72 3q8t_A Beclin-1; autophagy, AT 41.9 1.3E+02 0.0044 23.8 11.2 78 32-109 7-84 (96)
73 3ol1_A Vimentin; structural ge 40.7 1.4E+02 0.0049 24.1 9.5 32 55-86 74-105 (119)
74 3ryc_E Stathmin-4; alpha-tubul 40.7 1.8E+02 0.0062 25.2 9.8 43 94-136 81-124 (143)
75 2fic_A Bridging integrator 1; 40.4 1.7E+02 0.0059 24.9 11.1 30 87-116 199-228 (251)
76 2dgc_A Protein (GCN4); basic d 40.4 18 0.0006 26.9 2.6 31 64-94 30-60 (63)
77 3s4r_A Vimentin; alpha-helix, 40.1 1.3E+02 0.0046 23.6 9.7 75 6-81 11-87 (93)
78 3u06_A Protein claret segregat 39.7 40 0.0014 32.6 5.7 59 36-101 10-68 (412)
79 3ra3_A P1C; coiled coil domain 39.2 20 0.00069 23.7 2.4 27 73-99 2-28 (28)
80 2dq0_A Seryl-tRNA synthetase; 39.1 55 0.0019 31.9 6.6 30 70-99 75-104 (455)
81 2ic9_A Nucleocapsid protein; h 38.9 63 0.0022 26.6 5.8 44 64-117 23-66 (96)
82 1wt6_A Myotonin-protein kinase 38.3 1.1E+02 0.0038 24.5 7.0 55 43-97 17-71 (81)
83 3mq9_A Bone marrow stromal ant 38.0 2.5E+02 0.0085 26.0 10.9 50 47-96 394-454 (471)
84 1gu4_A CAAT/enhancer binding p 37.8 29 0.00099 27.1 3.5 30 68-97 40-69 (78)
85 1hjb_A Ccaat/enhancer binding 37.8 28 0.00097 27.7 3.5 30 68-97 40-69 (87)
86 2oqq_A Transcription factor HY 37.7 33 0.0011 24.7 3.5 25 67-91 6-30 (42)
87 2ic6_A Nucleocapsid protein; h 37.5 77 0.0026 25.2 6.0 44 64-117 23-66 (78)
88 2p22_A Suppressor protein STP2 36.8 65 0.0022 28.5 6.0 9 13-21 17-25 (174)
89 2zdi_C Prefoldin subunit alpha 36.7 31 0.0011 28.4 3.8 39 61-99 95-133 (151)
90 3iv1_A Tumor susceptibility ge 35.7 1.4E+02 0.0047 23.6 7.1 33 63-95 38-70 (78)
91 1t3j_A Mitofusin 1; coiled coi 35.2 79 0.0027 25.8 5.9 31 62-92 45-75 (96)
92 1dh3_A Transcription factor CR 35.2 25 0.00087 25.4 2.7 27 66-92 24-50 (55)
93 2fxo_A Myosin heavy chain, car 35.0 1.8E+02 0.0062 23.6 11.4 39 55-93 18-56 (129)
94 3o0z_A RHO-associated protein 34.9 2.4E+02 0.0082 24.9 12.9 70 10-90 40-109 (168)
95 1kd8_A GABH AIV, GCN4 acid bas 34.9 28 0.00095 24.4 2.7 27 68-94 5-31 (36)
96 3hhm_B NISH2 P85alpha; PI3KCA, 34.4 1.8E+02 0.0061 27.9 9.1 52 54-105 209-260 (373)
97 1deq_A Fibrinogen (alpha chain 33.2 1.4E+02 0.0046 29.8 8.2 65 67-138 63-134 (390)
98 3cvf_A Homer-3, homer protein 32.5 69 0.0023 25.3 4.9 59 66-131 8-66 (79)
99 3viq_A SWI5-dependent recombin 32.3 1.1E+02 0.0039 25.4 6.5 17 32-48 39-55 (122)
100 4emc_A Monopolin complex subun 31.7 1.4E+02 0.0048 27.0 7.5 61 51-111 21-81 (190)
101 3cve_A Homer protein homolog 1 31.3 1.5E+02 0.005 23.1 6.5 57 68-131 4-60 (72)
102 3iv1_A Tumor susceptibility ge 31.0 1.9E+02 0.0065 22.8 7.2 62 23-91 12-73 (78)
103 3a7p_A Autophagy protein 16; c 30.9 2.3E+02 0.008 24.8 8.5 63 37-99 69-131 (152)
104 2xs1_A Programmed cell death 6 30.7 4.4E+02 0.015 26.7 14.8 25 87-111 558-582 (704)
105 4fla_A Regulation of nuclear P 30.6 2.2E+02 0.0075 24.3 8.2 77 50-137 65-144 (152)
106 3trt_A Vimentin; cytoskeleton, 30.6 1.6E+02 0.0054 21.6 7.0 36 36-71 20-56 (77)
107 2akf_A Coronin-1A; coiled coil 29.6 43 0.0015 22.8 2.8 23 184-206 4-26 (32)
108 2oxj_A Hybrid alpha/beta pepti 29.4 40 0.0014 23.4 2.7 25 68-92 5-29 (34)
109 1kd8_B GABH BLL, GCN4 acid bas 29.2 46 0.0016 23.3 3.0 27 68-94 5-31 (36)
110 2b9c_A Striated-muscle alpha t 29.1 2.6E+02 0.009 23.6 8.6 46 47-92 77-122 (147)
111 3m48_A General control protein 28.8 35 0.0012 23.5 2.3 25 68-92 4-28 (33)
112 3a7o_A Autophagy protein 16; c 28.7 1.3E+02 0.0044 23.9 5.9 55 37-91 19-73 (75)
113 3dyt_A Sorting nexin-9; 3-heli 28.6 3.6E+02 0.012 25.0 10.1 53 61-116 304-357 (366)
114 2eqb_B RAB guanine nucleotide 27.9 1.4E+02 0.0049 24.3 6.2 41 43-83 19-59 (97)
115 3mq7_A Bone marrow stromal ant 27.8 2.9E+02 0.0098 23.6 9.3 54 44-97 19-83 (121)
116 1ik9_A DNA repair protein XRCC 27.1 1.7E+02 0.0057 26.2 7.1 40 67-106 135-174 (213)
117 1x79_B RAB GTPase binding effe 27.1 2.7E+02 0.0093 23.1 8.6 78 7-84 16-104 (112)
118 3bas_A Myosin heavy chain, str 27.0 2.2E+02 0.0074 22.0 7.8 36 55-90 19-54 (89)
119 3etw_A Adhesin A; antiparallel 27.0 2.8E+02 0.0096 23.2 11.9 91 11-109 9-102 (119)
120 3zbh_A ESXA; unknown function, 26.7 1.8E+02 0.006 20.8 8.7 73 73-149 18-95 (99)
121 1ci6_A Transcription factor AT 26.6 1.1E+02 0.0036 22.5 4.8 39 39-84 19-57 (63)
122 2pnv_A Small conductance calci 26.5 57 0.0019 23.2 3.2 34 54-97 9-42 (43)
123 1deq_A Fibrinogen (alpha chain 26.3 3.3E+02 0.011 27.1 9.5 73 83-155 58-130 (390)
124 3c3g_A Alpha/beta peptide with 25.0 53 0.0018 22.6 2.7 26 68-93 4-29 (33)
125 3lss_A Seryl-tRNA synthetase; 24.9 1.6E+02 0.0056 29.3 7.3 27 73-99 113-139 (484)
126 1t6f_A Geminin; coiled-coil, c 24.9 51 0.0017 23.2 2.6 23 163-185 12-34 (37)
127 1nkp_A C-MYC, MYC proto-oncoge 24.7 88 0.003 24.2 4.3 37 61-97 49-85 (88)
128 2w6a_A ARF GTPase-activating p 24.4 91 0.0031 24.1 4.2 43 161-203 16-58 (63)
129 4afl_A P29ING4, inhibitor of g 24.4 2.4E+02 0.0083 21.7 9.8 38 6-43 13-50 (104)
130 3pp5_A BRK1, protein brick1; t 23.7 40 0.0014 26.4 2.2 26 55-80 43-68 (73)
131 1t2k_D Cyclic-AMP-dependent tr 23.6 79 0.0027 22.7 3.6 33 52-84 24-56 (61)
132 2zuo_A MVP, major vault protei 23.6 7.4E+02 0.025 27.0 12.9 19 43-61 697-715 (861)
133 3mq7_A Bone marrow stromal ant 23.5 2.1E+02 0.0071 24.4 6.6 22 52-73 73-94 (121)
134 2no2_A HIP-I, huntingtin-inter 23.3 3E+02 0.01 22.2 8.5 33 50-82 8-40 (107)
135 3ghg_A Fibrinogen alpha chain; 22.8 5.1E+02 0.018 26.9 10.5 67 65-138 58-131 (562)
136 2hy6_A General control protein 22.7 63 0.0021 22.4 2.7 27 68-94 5-31 (34)
137 3gwk_C SAG1039, putative uncha 22.5 2.3E+02 0.0077 20.6 8.1 77 69-149 13-94 (98)
138 3i00_A HIP-I, huntingtin-inter 22.4 1.1E+02 0.0037 25.4 4.7 31 168-198 11-41 (120)
139 3c3f_A Alpha/beta peptide with 22.3 64 0.0022 22.4 2.7 25 68-92 5-29 (34)
140 3bas_A Myosin heavy chain, str 22.0 2.7E+02 0.0094 21.4 7.6 42 64-105 14-55 (89)
141 4dk0_A Putative MACA; alpha-ha 21.9 1.8E+02 0.0062 25.7 6.4 15 9-23 68-82 (369)
142 3gpv_A Transcriptional regulat 21.7 3.2E+02 0.011 22.2 7.4 27 51-77 103-129 (148)
143 3lay_A Zinc resistance-associa 21.4 2.3E+02 0.0077 24.7 6.7 24 46-69 81-104 (175)
144 4etp_A Kinesin-like protein KA 21.2 1.7E+02 0.0058 28.0 6.4 52 46-97 6-57 (403)
145 1uo4_A General control protein 20.8 62 0.0021 22.4 2.3 25 68-92 5-29 (34)
146 2efr_A General control protein 20.4 4.2E+02 0.014 22.9 15.0 87 55-159 26-112 (155)
147 3p8c_E Probable protein brick1 20.4 52 0.0018 25.9 2.2 24 56-79 44-67 (75)
148 3qh9_A Liprin-beta-2; coiled-c 20.2 1.5E+02 0.0052 23.7 4.8 24 71-94 33-56 (81)
149 3fx7_A Putative uncharacterize 20.1 2.2E+02 0.0076 23.1 5.9 59 75-133 17-79 (94)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.21 E-value=0.37 Score=38.91 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
....++..++.++......+.+++..+..++.....++.....+...+..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (284)
T 1c1g_A 59 KYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATA 109 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=94.72 E-value=1.4 Score=35.63 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=25.9
Q ss_pred HHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhH
Q 040671 49 SRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRE 102 (358)
Q Consensus 49 ~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE 102 (358)
..++..++.++......+..++..+.-++.+...+......+...+..+-....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 54 EDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555555555555555444444333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.66 E-value=2.3 Score=37.93 Aligned_cols=177 Identities=10% Similarity=0.081 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
++||.+=+++..|+.+......|+. +...++..|+..+......+..+++.++-++++...+..+.+..
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~-----------~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLD-----------KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888755444333322 23334556666666667777777777777777777777777777
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchhhhhhhhhhh
Q 040671 91 KETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVPYLQKTLSAK 170 (358)
Q Consensus 91 K~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv~LqKsllvK 170 (358)
+..+.+.=..| .|.. |..-|+.-.+.+..+.++|-..+.-.+..+.++...+.-+...+
T Consensus 80 ~~~l~~v~~~k-----E~~a----L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~------------ 138 (256)
T 3na7_A 80 QKKMSEIKSER-----ELRS----LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE------------ 138 (256)
T ss_dssp HHHHHHCSSSS-----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHccCCHH-----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 77776543333 3443 33444455555666666555555555555555544444333222
Q ss_pred hHHHHHhhhhHHHHHHhhh-hHHHHHHHHHHHHHhcChhhhhhhhhhhhhh
Q 040671 171 DVVIQNLISEKEALHLEVG-KLGIILQRIQDAIATMNQEDNNAFHTALMLK 220 (358)
Q Consensus 171 D~~I~~L~sekqAl~~El~-~leiiLqrfQd~~s~m~~E~~k~Fssil~~Q 220 (358)
.-+..+..+..+-..|+. .++.+..+-.++...|+..-...|.-|-...
T Consensus 139 -~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 139 -KLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWA 188 (256)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 122222223333333332 1233446677788888888888887776543
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.84 E-value=0.086 Score=56.15 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=4.3
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
+|+.++....+.+..|+.+++-++.+.+.+++...++...+
T Consensus 931 ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l 971 (1184)
T 1i84_S 931 EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971 (1184)
T ss_dssp HHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.70 E-value=0.3 Score=46.44 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhh
Q 040671 103 NFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHL 137 (358)
Q Consensus 103 ~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl 137 (358)
..++.-++..=++++.+...+.+|.-+.+|++.+-
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444445555666666677777777777777653
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.42 E-value=3 Score=37.16 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=14.8
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
.+.|...|.+++.+.+.+|+...++...++
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.97 E-value=0.21 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=8.5
Q ss_pred HhhhhhhccchHHHHHhHHHHHH
Q 040671 70 ERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 70 E~kIk~Lenen~~LEkn~keLK~ 92 (358)
+.++.-++.+...|+...++++.
T Consensus 912 e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 912 EEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 8
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.15 E-value=1.1 Score=37.38 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=68.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 20 TRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 20 vR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
.|+|+++-...+.|+...--|.++...++......||.||....+..+.|=.+|--||..|.-||......-.++..
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 47888888888888888888888888889999999999999999999999999999999999999998876666554
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.16 E-value=4.8 Score=38.27 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhhh
Q 040671 12 QLQALIAETRHLKEKEN 28 (358)
Q Consensus 12 qLqaLisEvR~LRerE~ 28 (358)
.+..+-.+++.|+++..
T Consensus 457 e~~~~~~~i~~l~~~~~ 473 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQI 473 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555443
No 10
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=88.91 E-value=5.9 Score=38.90 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=81.8
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhh
Q 040671 73 VSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQ 152 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKq 152 (358)
+..|++|+..|+.=.++|+..+..+..-.+.|-+-+..-.-. ...++..-+++.----|.-+++.+|+.|+.=...-|.
T Consensus 237 leVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~~fk~ 315 (413)
T 4hpq_C 237 FEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDAD-KAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKA 315 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998666554444333333221111 1122222122222223666789999999877655444
Q ss_pred hcccccchhhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChh
Q 040671 153 VVDNVECVPYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQE 208 (358)
Q Consensus 153 vld~vq~lv~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E 208 (358)
++ .-.++..-..++.+-.++.+++. |+.||+-.....+++.+++..+.++
T Consensus 316 ~~-----~~~~~~~~~L~~~Y~~f~~aY~~-lL~Ev~RRr~~~~~~~~i~~~~~~~ 365 (413)
T 4hpq_C 316 SC-----LEDIRQTRNLLDFYANFERSYHN-LLKEVKRRKETAAKLSQILKSCETQ 365 (413)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 44556666678888888888887 9999988777666666666554443
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.79 E-value=4.8 Score=43.30 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=16.5
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHH
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQ 199 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQ 199 (358)
..+..|.++++-|...+..|+-.++.-+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666664444433
No 12
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.59 E-value=6 Score=33.10 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 16 LIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 16 LisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
|=.++|.|++-=-.++.+-..+...|+++-|+|..++++|+..+..+.-.+..|-...+-.+ .+...+|.
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q----------~~vq~qL~ 80 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK----------RDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 33444555542222233333344459999999999999999999888777777665555443 34567889
Q ss_pred HHHHhhHHHH
Q 040671 96 RLLQYRENFL 105 (358)
Q Consensus 96 ~LLQSRE~Fi 105 (358)
.|-+||+.+-
T Consensus 81 ~Lt~~Re~V~ 90 (112)
T 1x79_B 81 VLMQSREQVS 90 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.54 E-value=8.5 Score=41.43 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhh
Q 040671 40 KQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAI 119 (358)
Q Consensus 40 k~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sI 119 (358)
+.+..++....++.+|+.++. .+++++....-+++....|++...+|+..++.+..-++..-+.++...
T Consensus 950 ~~~~~~~~~~~e~~~L~~~l~----~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~------- 1018 (1080)
T 2dfs_A 950 KMNNLEITYSTETEKLRSDVE----RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK------- 1018 (1080)
T ss_dssp -CHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 333333444445555544332 223333344444444444555555555555555544444433333211
Q ss_pred hhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcccccchh
Q 040671 120 ETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVDNVECVP 161 (358)
Q Consensus 120 e~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld~vq~lv 161 (358)
.-|.+|+ .++++|....+|-+++...++
T Consensus 1019 -------~~L~~kv-------~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1019 -------HETEQLV-------SELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp -------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 1122333 356777778888887777544
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.36 E-value=8.4 Score=34.55 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 19 ETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 19 EvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
-.|+|+.+-...+.|+...--|.++.--++...+..||.++....+..+.|-.+|--||-.|--||++..-.-.+++.
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 345555555555555544444444444445555888888888888888888888888888888888887776665554
No 15
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=86.23 E-value=0.68 Score=36.96 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhh
Q 040671 174 IQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNN 211 (358)
Q Consensus 174 I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k 211 (358)
++-|++++.+|..|+.++..+..|++.-+..+-+|-++
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77899999999999999999999999999999888776
No 16
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.37 E-value=13 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=31.4
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
..+++...|+.++.+++.+.+.|+++.+.+...|+.+
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999988888887765
No 17
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=81.23 E-value=1.3 Score=34.25 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred hhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 162 YLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 162 ~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
++++-+..||.-|..|..+.+.-..|+..|..-|+|||++|.
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 577889999999999999999999999999999999999986
No 18
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.34 E-value=8.1 Score=29.85 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhh-------------------hcHHHHHH
Q 040671 8 KFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELA-------------------STNELCQK 68 (358)
Q Consensus 8 kfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaEla-------------------s~~E~~qk 68 (358)
.+.-++|.++.++..|+.+-.....++...- ...++....-.||. ..+++...
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~--------~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~ 74 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQ--------LELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAE 74 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHH
Confidence 3455788888888888855544443332221 11122222222222 35678888
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
|+.++.+++.+...|+++...+...|+.+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877777776654
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.17 E-value=7.1 Score=40.22 Aligned_cols=86 Identities=14% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHH-------HHHhhhhhhccch-HH
Q 040671 12 QLQALIAET-RHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQ-------KLERKVSYLQNDN-AL 82 (358)
Q Consensus 12 qLqaLisEv-R~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~q-------kLE~kIk~Lenen-~~ 82 (358)
|||-||-+. |+|+.|=...|.++...-|.-+.++.-+.-....||..+..+.+... -||++|.||+.+. .+
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655 67777777777777777555555555555555566666665554443 5666676666543 22
Q ss_pred HHHhHHHHHHHHHHHH
Q 040671 83 LENKQKELKETINRLL 98 (358)
Q Consensus 83 LEkn~keLK~ti~~LL 98 (358)
+ .+.+-|+.+|+.++
T Consensus 130 l-snIrvLQsnLedq~ 144 (562)
T 3ghg_A 130 V-QHIQLLQKNVRAQL 144 (562)
T ss_dssp H-HHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHH
Confidence 2 44444544444443
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.86 E-value=15 Score=30.92 Aligned_cols=59 Identities=12% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 38 VQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 38 iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
....++.=++..+++..|.-++.+...-...++..+.-|+.++..|+++...|...++.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444566788888888888888888888888888888888888888887666543
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=77.74 E-value=13 Score=30.98 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=45.0
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhh
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRA 118 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~s 118 (358)
+...-.+||+.-+.+..+-+.-|++.|...+.+.+.--=-. .=|+.|..||...+.--..|+..
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~--------~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPA--------GDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888888888888888888888776543220001 12788999999999766666643
No 22
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.71 E-value=12 Score=29.69 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHH
Q 040671 35 HLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLEN 85 (358)
Q Consensus 35 ~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEk 85 (358)
..-..+..+.|+.+-|+-..++.++..-.+-++.|++++.|-++....|.|
T Consensus 45 e~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 45 QAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445566666677777777777777777777777777776666655544
No 23
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=76.66 E-value=2.2 Score=31.92 Aligned_cols=43 Identities=37% Similarity=0.417 Sum_probs=32.2
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
|...+|-.-..--|||+-|-.|||||+-||+....|...|-+|
T Consensus 8 lknrvayklkenaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 8 LKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 3333443333456899999999999999999999998888776
No 24
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.20 E-value=3.1 Score=30.04 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=14.9
Q ss_pred HHHHHhhhhhhccchHHHHHh
Q 040671 66 CQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn 86 (358)
--.||.||+-|||||..|-.-
T Consensus 19 naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 345778888888888777553
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.55 E-value=37 Score=30.44 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=60.9
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhh
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCD 114 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stce 114 (358)
-+.-||...+++..+..+|++|+..--+.=+-||.. ||.+..++|++.+.|+.....|-.-.+..-..|+.+.-+
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999998888777778764 778888888999998888888888887777777765433
No 26
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.10 E-value=12 Score=30.15 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhh
Q 040671 14 QALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKV 73 (358)
Q Consensus 14 qaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kI 73 (358)
..|+-|+++||-|=-..-.|=--.-.|.|.|-+ ++..||-+|+..+-..++|-.++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~----El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKA----EVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHhhHHHHHHHHHHH
Confidence 479999999997766665565566667777763 46677777777777666665544
No 27
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=73.09 E-value=5 Score=40.18 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=13.2
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 36 LLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 36 ~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
.+-+|.++.+|+.+ -.+.+|..+.+.-+.|+.+.+..|.+-..|+++..++...++.|..+.
T Consensus 339 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~ 400 (575)
T 2i1j_A 339 EYQDRLRQMQEEME----RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETK 400 (575)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHC------------------------------------
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433 344555666777778889999999999999999999999999998875
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.09 E-value=5.8 Score=31.12 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHH
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~ 96 (358)
+++||..|-..++-++..+.+|.-|+.+....+...++|+..+..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888888888888777654
No 29
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=71.08 E-value=70 Score=30.09 Aligned_cols=73 Identities=10% Similarity=0.037 Sum_probs=36.9
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhcccccCc--ccc--chhHHhHhhhh-hcCCCCCC
Q 040671 177 LISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKENCNDIGTV--NED--TRWLDRVKDAN-YNGGERSP 251 (358)
Q Consensus 177 L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe~~Ddvg~~--~e~--t~~~d~v~e~~-qn~ge~sp 251 (358)
+..+...-..||.+|+..+++.+..-.. .++ .-+++.+.-.|+.--.|-.. ++. -.-.+-|+..+ ++||+..|
T Consensus 321 ~~~~~~~k~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~p 398 (406)
T 4dyl_A 321 ATEMVFRRQEMVTQLQQELRNEEENTHP-RER-VQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGEPP 398 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCT-TCG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc-chH-HHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444445556777777777777665433 222 34455554444433332100 000 01146677777 67766666
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.90 E-value=41 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=23.3
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHHHH
Q 040671 172 VVIQNLISEKEALHLEVGKLGIILQRIQD 200 (358)
Q Consensus 172 ~~I~~L~sekqAl~~El~~leiiLqrfQd 200 (358)
..|..++.++..+..|+.+|..-+.+|..
T Consensus 63 ~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 63 RQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566888999999999999888887753
No 31
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=68.82 E-value=12 Score=28.54 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 33 EIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 33 E~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
|.+..|.++|.+. ....+|..+-..-|....+||.....-. +...|-+.--.||+.|..+|+.
T Consensus 4 e~~d~I~~Lk~~d----~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 4 EFRDEISVLKANN----PHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHSTTTS----TTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 4567788888764 4567888888889999999999988888 9999999999999999999864
No 32
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=68.64 E-value=16 Score=29.46 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 30 ATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 30 areE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
.|+....+..+-+..|+.|-|+.+- .+|+ .++.+|+..|+.-+-+...||+.....|..|..|
T Consensus 15 ir~aggaFgKrEaA~Ee~Yfrqkek--EqL~---~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 15 VRDAGGAFGKREQAEEERYFRARAK--EQLA---ALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcccHHHHhHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677777777776554331 1222 2667777777777777777777777777777766
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.52 E-value=13 Score=28.74 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=55.9
Q ss_pred cccchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHH-----------HHhHHHHHHHhhhcHHHHHHHHhh
Q 040671 4 LRLSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEY-----------SRNLKELQSELASTNELCQKLERK 72 (358)
Q Consensus 4 l~lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~-----------~Re~~ELqaElas~~E~~qkLE~k 72 (358)
..|+.++-+++.+......|. .-..|+.+.+.-.....++- .+.+.+....|..+. ..|+..
T Consensus 13 ~~~~~l~~~~~~l~~q~~~l~----~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~---e~ie~~ 85 (117)
T 2zqm_A 13 GQLESYQQQLQLVVQQKQKVQ----LELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKI---ETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHH---HHHHHH
Confidence 457777888888888777775 23344455554444444331 123445555554443 344667
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 73 VSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
|+-|+.....+++..++++..+..+++.
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7777777777788888888888888764
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.52 E-value=13 Score=27.18 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+-...||.++..|+.+|..|......|...+..|
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888888777777766554
No 35
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.18 E-value=15 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 65 LCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 65 ~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
....||.++..|+.+|..|......|...+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777766655
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.31 E-value=46 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=10.7
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccch
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDN 80 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen 80 (358)
+..+++++-...+...++|..|.-|+.-+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 37
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=66.13 E-value=23 Score=30.03 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=54.2
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHH----------HHhhhhhh
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVL----------HEKINSHL 137 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~Vl----------sEKLnshl 137 (358)
-++++++-||+++.+|++++..-=-.-+....+=..-+..|. .|+.+|..+-.+|.-. -+.++..-
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~----~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk 81 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNE----QVYNELSQRAQRLQAEANTRFYKSQYQELASKYE 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 467778888888888888776654444444444444444444 3666666665555542 24455556
Q ss_pred hhhhhhhhhHHHHhhhcccccch
Q 040671 138 TLFDSIEKEAFSIKQVVDNVECV 160 (358)
Q Consensus 138 ~LFdSIekEa~svKqvld~vq~l 160 (358)
.+...+++++..-.+++||+..|
T Consensus 82 ~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 82 DALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.83 E-value=21 Score=28.98 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=16.5
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
.|+..|.-+.+-++.||+...+.+.....-+..-..-|.+++
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE 88 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELE 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444433333333333333333
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.51 E-value=35 Score=29.98 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=13.4
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccch
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDN 80 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen 80 (358)
-++.|+.|+.+.+=..--+|.|+.-|+-||
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 40
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=62.54 E-value=77 Score=27.47 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=24.8
Q ss_pred hhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 43 RNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
+.++.|..+++.|...+..+.--..--||.|..||.+...||..
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666555555555555555555555555543
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.44 E-value=22 Score=29.06 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
.+.|+..|.-+.+-++.||+...+.......-++.-..-|.+++.
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333444443
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.97 E-value=70 Score=25.90 Aligned_cols=52 Identities=25% Similarity=0.459 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHhhhcHHHHHHHHhhhh-----------hhccchHHHHHhHHHHHHHHHHHHH
Q 040671 48 YSRNLKELQSELASTNELCQKLERKVS-----------YLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 48 ~~Re~~ELqaElas~~E~~qkLE~kIk-----------~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.+|.++.|++|+.+..-....||+.|. -++.-...||.-...+|..|...|+
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444333 3333344455555555565555444
No 43
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.97 E-value=16 Score=26.61 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+....||.++..|+.+|+.|......|...+..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888877777766544
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.00 E-value=39 Score=31.61 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 34 IHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 34 ~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
++..+.+..+...+..++......+.....+..++|+++-.-++-++..+.+...+-+.+++.+-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 44444433333333333333333333333444444444444444444444444444444444443
No 45
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring surface protein, LYME borreliosis, factor H binding, TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Probab=56.26 E-value=28 Score=31.23 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhhhccchHHH-HHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhh
Q 040671 63 NELCQKLERKVSYLQNDNALL-ENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHL 137 (358)
Q Consensus 63 ~E~~qkLE~kIk~Lenen~~L-Ekn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl 137 (358)
-..+..||.-+.-++++...| .++-++|-+.++.+|+-|++|++...+--=+.-+.++ .=.+||..|+
T Consensus 99 ~~IQ~~lE~~L~~Ikd~l~~L~k~~~e~Ll~~~e~~l~lKq~f~K~ln~tI~~Yn~n~~-------td~e~La~hi 167 (181)
T 1w33_A 99 WGIQFQIEQNLELIQNGVENLSQEESKSLLMQIKSNLEIKQRLKKTLNETLKVYNQNTQ-------DNEKILAEHF 167 (181)
T ss_dssp HHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hhHHHHHHHH
Confidence 345567777777777666666 6777899999999999999999998864444444444 3357777775
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.92 E-value=82 Score=25.64 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=10.0
Q ss_pred chHHHHHhHHHHHHHHHHHHH
Q 040671 79 DNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 79 en~~LEkn~keLK~ti~~LLQ 99 (358)
....||.-...+|..|...|+
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555554443
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.68 E-value=99 Score=28.72 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=10.7
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHH
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKET 93 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~t 93 (358)
..||.+++.-+.....||+..++|...
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333333
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=54.87 E-value=77 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHH
Q 040671 41 QKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKET 93 (358)
Q Consensus 41 ~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~t 93 (358)
.|.--+....++..+++++-...+...++|.-|..|+.-+.++|.-.-.+...
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555555555554443333333
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.43 E-value=80 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=12.1
Q ss_pred ccchhhhHHHHHHHHHHHhh
Q 040671 5 RLSKFKFQLQALIAETRHLK 24 (358)
Q Consensus 5 ~lSkfklqLqaLisEvR~LR 24 (358)
-|+|+--+.|.+|-.+-.|+
T Consensus 7 lleqLE~KIq~avdtI~lLq 26 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQ 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666777776555444
No 50
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.14 E-value=25 Score=28.05 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=31.6
Q ss_pred HhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhh
Q 040671 70 ERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAI 119 (358)
Q Consensus 70 E~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sI 119 (358)
|++|+-|++.|+.||+...+++.....=++.-..-|..++..-..++..+
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~ 60 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQM 60 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999998887777766666766665544444333
No 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.00 E-value=4e+02 Score=32.70 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHhhhhHHHHHHhhhhHHHHHHHHHHHHHhcChhhhhhhhhhhhhhh
Q 040671 173 VIQNLISEKEALHLEVGKLGIILQRIQDAIATMNQEDNNAFHTALMLKE 221 (358)
Q Consensus 173 ~I~~L~sekqAl~~El~~leiiLqrfQd~~s~m~~E~~k~Fssil~~Qe 221 (358)
-.+.++.||+++..|+...+.=|.|-+..++.++.|-.+-=.++-.++.
T Consensus 2050 ~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2050 EYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 3466788999999999999999999889998888876655555555443
No 52
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.77 E-value=1.4e+02 Score=29.21 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.4
Q ss_pred hhhhhh
Q 040671 267 LCQKHI 272 (358)
Q Consensus 267 ~cq~~~ 272 (358)
-|-..+
T Consensus 325 nCA~~~ 330 (409)
T 1m1j_C 325 NCAEQD 330 (409)
T ss_dssp CHHHHH
T ss_pred CccccC
Confidence 344333
No 53
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=51.13 E-value=12 Score=34.28 Aligned_cols=73 Identities=22% Similarity=0.229 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhHHHHH---HhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHH------HHHHHHhh
Q 040671 31 TEEIHLLVQKQKRNEEEYS---RNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKET------INRLLQYR 101 (358)
Q Consensus 31 reE~~~~iQk~K~~EEe~~---Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~t------i~~LLQSR 101 (358)
++|-++...|.---|-+|. .-+|.|+|++.+..-.-+-|+..+.-++.|+..|.++.+.|+|+ .+.+-|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~ 87 (206)
T 3oa7_A 8 PEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSR 87 (206)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHC
T ss_pred chhHHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcC
Confidence 3455555666544433332 33688999999999999999999999999999999999999995 45566665
Q ss_pred HH
Q 040671 102 EN 103 (358)
Q Consensus 102 E~ 103 (358)
-.
T Consensus 88 p~ 89 (206)
T 3oa7_A 88 PD 89 (206)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.62 E-value=89 Score=24.48 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=32.6
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
++.+-|+.+.-.+-|-...+|.+++-.+..+..+|.....|+..|+.|=+--+..-..|.
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555566666666666666666666665555554444333333333
No 55
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.33 E-value=33 Score=34.27 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=12.1
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 73 VSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LL 98 (358)
++-|..+...||...+++...++.+|
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555554444
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.30 E-value=26 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLL 98 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LL 98 (358)
++.+|+-|+....-+++..++++..|..++
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555555555555443
No 57
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.87 E-value=22 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=12.8
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 69 LERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
|+.++..|+.+|..|+.....|+..+.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555544444444443
No 58
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.34 E-value=9.3 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=30.1
Q ss_pred hhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 040671 166 TLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAI 202 (358)
Q Consensus 166 sllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~ 202 (358)
-|..||..|..|..+.+..-.||..|..-|.|||..+
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3477888899999988888888988888888887543
No 59
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=48.34 E-value=37 Score=28.46 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHh
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKR 117 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~ 117 (358)
.|+|||.-+.+-.+-|---+- ++-|++|...|++|++---++|+
T Consensus 53 iArQKLkdAe~~~E~DPDevN----------K~tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 53 TARQKLKDAEKAVEVDPDDVN----------KSTLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444433222 23477777777777775555554
No 60
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.67 E-value=21 Score=28.52 Aligned_cols=39 Identities=5% Similarity=0.170 Sum_probs=35.3
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
+.+||..-|++|++.|+.....+++....++.+|..+.+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999887764
No 61
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=47.17 E-value=1.3e+02 Score=25.43 Aligned_cols=73 Identities=10% Similarity=0.246 Sum_probs=47.6
Q ss_pred HHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHH--hhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhh
Q 040671 38 VQKQKRNEEEYSRNLKELQSELASTNELCQKLE--RKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEE 110 (358)
Q Consensus 38 iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE--~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~ 110 (358)
-++.|+..|.-.+.+.+.++--+...+-..+|+ ++++|-.+++..|=|+-++++..|+.=.-..+..|+-|+.
T Consensus 29 ynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 29 FNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444443 5677778888888888888888888777777777777774
No 62
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.86 E-value=1.1e+02 Score=24.69 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=27.8
Q ss_pred hhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 43 RNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
...+++.-.+..|+.||+++.+-+++|=..+.-++++++.+...-.
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~ 92 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777755555555555554444433
No 63
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.52 E-value=1.6e+02 Score=26.04 Aligned_cols=52 Identities=12% Similarity=0.260 Sum_probs=28.7
Q ss_pred hhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 43 RNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
++.+-.++...|++..+++.....+-|--++.-|++.-..||+....|...+
T Consensus 27 E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 27 DTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555566666666666666666666655554443
No 64
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.01 E-value=1.1e+02 Score=24.30 Aligned_cols=66 Identities=27% Similarity=0.279 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccch
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDN 80 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen 80 (358)
-++.+||.|=-.|.+--+..--==-++|.|. ++..-+..-|+.|+.+...++.|++.||+-||-|.
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rv----dELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKV----DELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777754444333334455554 34555666789999999999999999999988764
No 65
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=44.83 E-value=2.8e+02 Score=28.66 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhh--HHHHHHhHHHHHHHhhhcHHHHHHHHhhhh----hhccchHHHHHhHHHHHHHHHHHHHhhHHHH-
Q 040671 33 EIHLLVQKQKRN--EEEYSRNLKELQSELASTNELCQKLERKVS----YLQNDNALLENKQKELKETINRLLQYRENFL- 105 (358)
Q Consensus 33 E~~~~iQk~K~~--EEe~~Re~~ELqaElas~~E~~qkLE~kIk----~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi- 105 (358)
|-.-.-|.|..+ +|.-+|+....|+||..++....++-.|+. .++---+.| .....++..++-++.+|.
T Consensus 302 ee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~----~~~n~~~~~~~~~~~~f~~ 377 (551)
T 2b5u_A 302 EENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSEL----DAANKTLADAIAEIKQFNR 377 (551)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HhhhhHHHHHHHhhhhhhh
Confidence 333444566333 567788888899998888777666544432 222212222 223445555666777777
Q ss_pred HHHhhhhh--hhH----hhhhhcchhhHHHHHhhhhhhhhhhhhhhhHH
Q 040671 106 SAYEESTC--DMK----RAIETRDRKLTVLHEKINSHLTLFDSIEKEAF 148 (358)
Q Consensus 106 ~~Ye~stc--emk----~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~ 148 (358)
-+|..-.. .|- |+|+ -..+++|.-.++||..-+|.+
T Consensus 378 ~n~~p~~~Gh~~w~~~~~~~~-------~~~~dv~~~~a~~d~~~~~~s 419 (551)
T 2b5u_A 378 FAHDPMAGGHRMWQMAGLKAQ-------RAQTDVNNKQAAFDAAAKEKS 419 (551)
T ss_dssp GTTCTTSTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccChhhccchhhhhccchhh-------hhhhhhhhHHHHHHHHhhccc
Confidence 22211100 111 2222 233556767777777766553
No 66
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.73 E-value=69 Score=31.87 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.|-.+++-|-.+...||...++++..++.+|-
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666554
No 67
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=44.34 E-value=1e+02 Score=25.51 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=21.7
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQ 41 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sareE~~~~iQk~ 41 (358)
.++.-+|+.++.+++.++ +..++.++..++|+
T Consensus 87 ~~L~~~f~~~~~~fq~~Q---~~~~~~~k~~~~rq 118 (196)
T 1fio_A 87 ENSRQRFLKLIQDYRIVD---SNYKEENKEQAKRQ 118 (196)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 456777888888887776 45556666666655
No 68
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.05 E-value=27 Score=33.66 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHh
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQY 100 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQS 100 (358)
+-...|-.+++-|-.+...||...+++...++.+|-+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666667777777777777766643
No 69
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=43.97 E-value=45 Score=28.19 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhh
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAI 119 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sI 119 (358)
-|+|||.-..+..+-|.--+- +.-|++|...|++|++---++++-|
T Consensus 40 ~ArQKLkdA~~~~e~DPDevN----------K~tl~~R~~~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 40 IARQKVRDAEKQYEKDPDELN----------KRTLTDREGVAVSIQAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655555554443332 2347888888888887666666443
No 70
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.38 E-value=64 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHH
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQK 88 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~k 88 (358)
+..-++.++|-++.+......+|.+++..|+.++..||...+
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555444444333
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.15 E-value=2e+02 Score=28.17 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccc---------hHHHHHhHHHHHHHHHHHHHhh
Q 040671 31 TEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQND---------NALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 31 reE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lene---------n~~LEkn~keLK~ti~~LLQSR 101 (358)
.+++.....|++.+=...-+++..+..+|.........|=..|+...+. +.. -++-+++.+.+..|
T Consensus 22 ~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~-tq~skkml~~~~~~---- 96 (409)
T 1m1j_C 22 TCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL-TQKSKKIIEEIIRY---- 96 (409)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHH-HHHHHHHHHHHHHT----
T ss_pred cccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhH-HHHHHHHHHHHHHH----
Confidence 3566666666666555556666666666666666666665555555332 222 12222232322222
Q ss_pred HHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 102 ENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 102 E~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
|+-|...+..--.|+..+..-+.+|.-|.++|+
T Consensus 97 e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555444555444444444444444443
No 72
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=41.87 E-value=1.3e+02 Score=23.81 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHh
Q 040671 32 EEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
+.+...+++++..|+....++.+|..+-+..+..+..|+....-|..+-...=+..+.++-++-.+..-+.+.-+-|.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777788888777777777777777776666666655555555665555555555544444443
No 73
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.70 E-value=1.4e+02 Score=24.08 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=14.5
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHh
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENK 86 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn 86 (358)
|+..|...+=++--||++|.-|..|..-|.++
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444555555555555444443
No 74
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=40.66 E-value=1.8e+02 Score=25.22 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=29.8
Q ss_pred HHHHHHhhHHHHHHHhhh-hhhhHhhhhhcchhhHHHHHhhhhh
Q 040671 94 INRLLQYRENFLSAYEES-TCDMKRAIETRDRKLTVLHEKINSH 136 (358)
Q Consensus 94 i~~LLQSRE~Fi~~Ye~s-tcemk~sIe~~dr~l~VlsEKLnsh 136 (358)
++--+.--++|++.-++. ..-|+..=+.|.-+|+.+.|||..+
T Consensus 81 lqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek 124 (143)
T 3ryc_E 81 IQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 124 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333344456777776554 4677777788888899999998844
No 75
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=40.43 E-value=1.7e+02 Score=24.93 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhH
Q 040671 87 QKELKETINRLLQYRENFLSAYEESTCDMK 116 (358)
Q Consensus 87 ~keLK~ti~~LLQSRE~Fi~~Ye~stcemk 116 (358)
-+.|+..|..|.+.|-.|+..-=.+...++
T Consensus 199 n~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q 228 (251)
T 2fic_A 199 NVDLQEELPSLWNSRVGFYVNTFQSIAGLE 228 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999888776555555554
No 76
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.39 E-value=18 Score=26.91 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
+-...||.+|..|+.+|+.|+.....|+..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888899999888888777654
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=40.10 E-value=1.3e+02 Score=23.56 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=39.0
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHh-hHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchH
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATE-EIHLLVQKQKR-NEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNA 81 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sare-E~~~~iQk~K~-~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~ 81 (358)
+.-|--||-+.|.=||.| |-++...+ +++..-++... -..-|..++.+||.+|....-..-+|+..|.-|+.+..
T Consensus 11 mq~LNdRlAsyIdKVR~L-EqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFL-EQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566888899999998 44444432 33322222111 12224455566665555555555555555544444433
No 78
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.74 E-value=40 Score=32.55 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhh
Q 040671 36 LLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYR 101 (358)
Q Consensus 36 ~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSR 101 (358)
..+...++..++..++.+.+++++....+.+.+.|. +.-.|-|...+||++|+..+--|
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-------~rr~l~n~~~~l~gnIrV~vRvR 68 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNM-------ERKELHNTVMDLRDNIRVFCRIR 68 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCEEEEEEcC
Confidence 334444455566666667777777666665555443 33345555667777777665443
No 79
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.21 E-value=20 Score=23.69 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=22.0
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 73 VSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
|..||-||..||.+..-||..|-+|-|
T Consensus 2 idalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhcC
Confidence 456788899999999999998877643
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.13 E-value=55 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=16.7
Q ss_pred HhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 70 ERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 70 E~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
-.+++-|-.+...||...+++...++.+|-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666554
No 81
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=38.88 E-value=63 Score=26.58 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHh
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKR 117 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~ 117 (358)
-|+|||.-..+..+-|.--+- ++-|++|...|++|++---++++
T Consensus 23 ~A~QKLkdA~~~~e~DPDevN----------k~~~~~R~~~V~~lq~Ki~elkr 66 (96)
T 2ic9_A 23 TTRQKLKDAERAVELDPDDVN----------KSTLQSRRAAVSALETKLGELKR 66 (96)
T ss_dssp HHHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666555554444443322 23478888888888876666654
No 82
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.25 E-value=1.1e+02 Score=24.52 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=42.2
Q ss_pred hhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 43 RNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
++-+.-.+-.+.++-||-....+...++++++--+..|.-|+-....|+..|+.|
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788888888888888888888888888888877777777777764
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.97 E-value=2.5e+02 Score=26.03 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhh-----------hhccchHHHHHhHHHHHHHHHH
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVS-----------YLQNDNALLENKQKELKETINR 96 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk-----------~Lenen~~LEkn~keLK~ti~~ 96 (358)
+.+--.+.||.+|....+-...+|..-. -|+.+-++-+++.+||.+.|..
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555444444321 2344444444445555444433
No 84
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.82 E-value=29 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
-++.++.+|+.+|..|......|+..+..|
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888887776654
No 85
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.76 E-value=28 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.2
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
-++.++..|+.+|..|......|+..+..|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999998888887654
No 86
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.65 E-value=33 Score=24.72 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.1
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHH
Q 040671 67 QKLERKVSYLQNDNALLENKQKELK 91 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK 91 (358)
-.||.|++-|++-|+.||.+..-|.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 87
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=37.50 E-value=77 Score=25.17 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHh
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKR 117 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~ 117 (358)
-|+|||.-..+-.+-|.--+- +.-|++|...|++|++---++|+
T Consensus 23 ~A~QKLkdA~~~~e~DPDevN----------K~~~~~R~~~V~~lq~Ki~elkr 66 (78)
T 2ic6_A 23 TTRQKLKDAERAVELDPDDVN----------KSTLQSRRAAVSALETKLGELKR 66 (78)
T ss_dssp HHHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665555554444443322 23478888888888876666654
No 88
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.82 E-value=65 Score=28.48 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=5.8
Q ss_pred HHHHHHHHH
Q 040671 13 LQALIAETR 21 (358)
Q Consensus 13 LqaLisEvR 21 (358)
||.+|+++-
T Consensus 17 Lq~~i~~l~ 25 (174)
T 2p22_A 17 LQTVVNELY 25 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667776663
No 89
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.67 E-value=31 Score=28.40 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=34.5
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
..+||..-|++|+++++.....+++....++.++..+..
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~ 133 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVAR 133 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988876643
No 90
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=35.70 E-value=1.4e+02 Score=23.60 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhhhccchHHHHHhHHHHHHHHH
Q 040671 63 NELCQKLERKVSYLQNDNALLENKQKELKETIN 95 (358)
Q Consensus 63 ~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~ 95 (358)
++-.+||+.-|.-|+-|-..|++|..-||+-.+
T Consensus 38 ~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 38 KKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655554433
No 91
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.23 E-value=79 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.1
Q ss_pred cHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 62 TNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 62 ~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
.|++.+-||..|+-|+.+...||..++.+|-
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4677778888888888888888888887764
No 92
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.23 E-value=25 Score=25.42 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=19.5
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
...||.+|..|+.+|..|......|+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788888888888777666653
No 93
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.95 E-value=1.8e+02 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHH
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKET 93 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~t 93 (358)
+..++....+.+.+-|...+-|+..+..|...-+.|..+
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444443333333
No 94
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.92 E-value=2.4e+02 Score=24.95 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHH
Q 040671 10 KFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKE 89 (358)
Q Consensus 10 klqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ke 89 (358)
...++++-.-+|.|+++=+ ..........+++..||++|..-...+..-...|.-||.-+..|+...+.
T Consensus 40 ~k~~~~~E~~~rELq~~~~-----------~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 40 SKSISQLESLNRELQERNR-----------ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566654433 33444445556666677666655544444333333333333333333333
Q ss_pred H
Q 040671 90 L 90 (358)
Q Consensus 90 L 90 (358)
+
T Consensus 109 ~ 109 (168)
T 3o0z_A 109 L 109 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=34.90 E-value=28 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
.||.||.-|-++++-||+.+..||.-+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 588999999999999999998887643
No 96
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.37 E-value=1.8e+02 Score=27.88 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=37.2
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFL 105 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi 105 (358)
-|++.|.+-.+..++|+.-++.-.-+|-.+|+.-+.||-.|-.|=..|..++
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~ 260 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYL 260 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 5677777777888888888888888888888888888887755555554433
No 97
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.20 E-value=1.4e+02 Score=29.77 Aligned_cols=65 Identities=12% Similarity=0.269 Sum_probs=36.7
Q ss_pred HHHHhhhhhhccchHHHHHhHHH-------HHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhh
Q 040671 67 QKLERKVSYLQNDNALLENKQKE-------LKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLT 138 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~ke-------LK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~ 138 (358)
+.+..+|.-|.|...-+.++.++ +++.++.-+..++..=+.|-+-.-+|+ ++|..|-+|++.++.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe-------~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLR-------SRIEILRRKVIEQVQ 134 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH-------HHHHHHHHHHHHHhH
Confidence 55555555555555555554443 344444444444444455555555666 467778888887765
No 98
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.46 E-value=69 Score=25.29 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHH
Q 040671 66 CQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHE 131 (358)
Q Consensus 66 ~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsE 131 (358)
+..+..|++-++..|.-||..+..|+.+|+.=-..|+.+-...+ +-++.=|-||--|+|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk-------~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG-------RAAQLLDVSLFELSE 66 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHH
No 99
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=32.33 E-value=1.1e+02 Score=25.38 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhHHHH
Q 040671 32 EEIHLLVQKQKRNEEEY 48 (358)
Q Consensus 32 eE~~~~iQk~K~~EEe~ 48 (358)
.++..+|+||+.+--+-
T Consensus 39 ~eL~~LI~KWr~asq~a 55 (122)
T 3viq_A 39 KDLQTLIQKWKNAAQQA 55 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999875443
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.71 E-value=1.4e+02 Score=27.03 Aligned_cols=61 Identities=21% Similarity=0.155 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEES 111 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~s 111 (358)
-++.|+.|+.--++.++..+..|+.|+.+.+.+++..+.+++....-+..=+-...-|++.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHc
Confidence 4566777776666666666677777777777777766666666554444433344455554
No 101
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.26 E-value=1.5e+02 Score=23.07 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHE 131 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsE 131 (358)
.+..|++-++.+|.-||..+..|+.+|+.=-..|+.+-...+ +-++.=|-||--|+|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk-------~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK-------TLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHH
No 102
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.03 E-value=1.9e+02 Score=22.81 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=33.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHH
Q 040671 23 LKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELK 91 (358)
Q Consensus 23 LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK 91 (358)
||.|=+-.-.....-++-+++|+.|...=.+-| ++...+|++...-|+...+-|..+.+||.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL-------~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKL-------EEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333334444455555566665544443333 45555666666666666666666666654
No 103
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.91 E-value=2.3e+02 Score=24.79 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
.|...+..-...++++..|..++...+-+.+.|=..+--|+.++..+|.+.+.|+.-=+.|++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555566666666666666666666667777777777777777777665444444
No 104
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=30.67 E-value=4.4e+02 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhh
Q 040671 87 QKELKETINRLLQYRENFLSAYEES 111 (358)
Q Consensus 87 ~keLK~ti~~LLQSRE~Fi~~Ye~s 111 (358)
.+.+-..++.|-..|+.+++.+++.
T Consensus 558 L~~~l~~l~~l~~~R~~~~~~lk~~ 582 (704)
T 2xs1_A 558 LKSLLSNLDEVKKEREGLENDLKSV 582 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555556677788888888888753
No 105
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.63 E-value=2.2e+02 Score=24.30 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhhccchH---HHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhh
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYLQNDNA---LLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKL 126 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~Lenen~---~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l 126 (358)
+...+...=....++++..|+.-++.|+.|.. +|.....+.....+..|.-.+--+++|+ .+-.++
T Consensus 65 kDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK-----------~Kl~rv 133 (152)
T 4fla_A 65 TDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK-----------QKLARV 133 (152)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Q ss_pred HHHHHhhhhhh
Q 040671 127 TVLHEKINSHL 137 (358)
Q Consensus 127 ~VlsEKLnshl 137 (358)
..+--||++|+
T Consensus 134 ~~vkkeL~~hi 144 (152)
T 4fla_A 134 TQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 106
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.62 E-value=1.6e+02 Score=21.56 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHH-HHhhHHHHHHhHHHHHHHhhhcHHHHHHHHh
Q 040671 36 LLVQK-QKRNEEEYSRNLKELQSELASTNELCQKLER 71 (358)
Q Consensus 36 ~~iQk-~K~~EEe~~Re~~ELqaElas~~E~~qkLE~ 71 (358)
...+| +.++|.=|..+..+|+..+....+.++.-..
T Consensus 20 ~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~ 56 (77)
T 3trt_A 20 SVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQ 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344 3456666888899999999888887766433
No 107
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.56 E-value=43 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=19.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcC
Q 040671 184 LHLEVGKLGIILQRIQDAIATMN 206 (358)
Q Consensus 184 l~~El~~leiiLqrfQd~~s~m~ 206 (358)
|..|+.+|..|+|++|+-++.+.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999887664
No 108
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.39 E-value=40 Score=23.40 Aligned_cols=25 Identities=40% Similarity=0.423 Sum_probs=21.2
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
.||.||.-|=++|+.||+.+.-||+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5888898888999999998887775
No 109
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.24 E-value=46 Score=23.31 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
.||.||.-|=++++-||+.+..||.-+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 588888888888888888888887644
No 110
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=29.12 E-value=2.6e+02 Score=23.63 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHH
Q 040671 47 EYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 47 e~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
+-.|++.-+..+|.-+.+-....|++|.-|+.+.-.+-+|.|.|.-
T Consensus 77 E~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 77 EVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3455666677777777777777777777777777777777666543
No 111
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.76 E-value=35 Score=23.50 Aligned_cols=25 Identities=44% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
.||.||.-|=.+|+.||+.+.-||.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4888898899999999998888775
No 112
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.74 E-value=1.3e+02 Score=23.88 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHH
Q 040671 37 LVQKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELK 91 (358)
Q Consensus 37 ~iQk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK 91 (358)
.+-.+++.=.+..++++.|+..++-++--.++|--.|=-+--||.+|..+-..||
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3444555555667777777777777777777777777777667777666655544
No 113
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=28.63 E-value=3.6e+02 Score=24.98 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=41.8
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHh-HHHHHHHHHHHHHhhHHHHHHHhhhhhhhH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENK-QKELKETINRLLQYRENFLSAYEESTCDMK 116 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn-~keLK~ti~~LLQSRE~Fi~~Ye~stcemk 116 (358)
..+++.++.|.=...+..|+.-.+.. ..++|..|...++.. |++|+...--++
T Consensus 304 ~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~q---i~~~k~~~~~w~ 357 (366)
T 3dyt_A 304 DKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQ---VQFYETIAEKLR 357 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45788889999889999999888665 889999999999877 777775444443
No 114
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.87 E-value=1.4e+02 Score=24.35 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=26.9
Q ss_pred hhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHH
Q 040671 43 RNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALL 83 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~L 83 (358)
..-.+...++..|+.++..-...+...|+..+-++.|.+-|
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566666677777777777777777777666655444
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.78 E-value=2.9e+02 Score=23.61 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=24.5
Q ss_pred hHHHHHHhHHHHHHHhhhcHHHHHHHHhh-----------hhhhccchHHHHHhHHHHHHHHHHH
Q 040671 44 NEEEYSRNLKELQSELASTNELCQKLERK-----------VSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 44 ~EEe~~Re~~ELqaElas~~E~~qkLE~k-----------Ik~Lenen~~LEkn~keLK~ti~~L 97 (358)
++.|++--++=|+.+|--+.|.++.-|.. ..-|+.+.++-.+..++|++.|..|
T Consensus 19 Aq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~L 83 (121)
T 3mq7_A 19 AVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444444421 1123334444344455566555544
No 116
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.14 E-value=1.7e+02 Score=26.19 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=25.0
Q ss_pred HHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 040671 67 QKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLS 106 (358)
Q Consensus 67 qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~ 106 (358)
..|+.++.-|+.+|..|+.-.+.|+.+++.+...++.+=.
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~ 174 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666777777777777665543
No 117
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.07 E-value=2.7e+02 Score=23.14 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=44.3
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHHHHH-----------HhhhcHHHHHHHHhhhhh
Q 040671 7 SKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKELQS-----------ELASTNELCQKLERKVSY 75 (358)
Q Consensus 7 SkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~ELqa-----------Elas~~E~~qkLE~kIk~ 75 (358)
.+++-||..+..+-..|=..=...+++...-|+.+...-..-...+.+||. +++.-.+.++++=.++.-
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~r 95 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776666677788888888777776666666666654 444555556666667777
Q ss_pred hccchHHHH
Q 040671 76 LQNDNALLE 84 (358)
Q Consensus 76 Lenen~~LE 84 (358)
|+-||.-|-
T Consensus 96 LQ~eNd~L~ 104 (112)
T 1x79_B 96 LQKDNDSLQ 104 (112)
T ss_dssp ---------
T ss_pred HHhhccchh
Confidence 888877653
No 118
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.03 E-value=2.2e+02 Score=21.97 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHH
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKEL 90 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keL 90 (358)
+..++....+.+.+.|...+-|+..+..|...-+.|
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333333333333333333
No 119
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.98 E-value=2.8e+02 Score=23.25 Aligned_cols=91 Identities=19% Similarity=0.304 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhHHH---HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhH
Q 040671 11 FQLQALIAETRHLKEKENSATEEIHLLVQKQKRNEEEYSRNLKE---LQSELASTNELCQKLERKVSYLQNDNALLENKQ 87 (358)
Q Consensus 11 lqLqaLisEvR~LRerE~sareE~~~~iQk~K~~EEe~~Re~~E---LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~ 87 (358)
-+|.+|-.|.-.|.-+|.. + .++.++..|...+.+.+ ++++|..+-+-++. .++.++-..++..|=+.-
T Consensus 9 ~~l~~Leae~q~L~~~E~q-----r--y~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~-~~~~~~yk~~y~~l~k~Y 80 (119)
T 3etw_A 9 GELQALDAEYQNLANQEEA-----R--FNEERAQADAARQALAQNEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKY 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHH
Confidence 4566666666666644332 2 23344444444444444 44444444444444 345666666666666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHh
Q 040671 88 KELKETINRLLQYRENFLSAYE 109 (358)
Q Consensus 88 keLK~ti~~LLQSRE~Fi~~Ye 109 (358)
+.++..|+.=+-.-+..|.-|+
T Consensus 81 ~~~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 81 EDALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555566666655
No 120
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=26.72 E-value=1.8e+02 Score=20.85 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=43.7
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHH-----HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhH
Q 040671 73 VSYLQNDNALLENKQKELKETINRLL-----QYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEA 147 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LL-----QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa 147 (358)
..-+.+-...++.....|+..+..|- +..++|...|....=.++ .-...|.-+++.|+..-.-|...+.++
T Consensus 18 A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~----~~~~~L~~i~~~L~~~a~~~~~~d~~~ 93 (99)
T 3zbh_A 18 ARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFE----KMAVLLNEVGQQLHNSATILEDTDQQI 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555553 467899998886433333 333356666777777777777777776
Q ss_pred HH
Q 040671 148 FS 149 (358)
Q Consensus 148 ~s 149 (358)
++
T Consensus 94 a~ 95 (99)
T 3zbh_A 94 AS 95 (99)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 121
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.59 E-value=1.1e+02 Score=22.51 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH
Q 040671 39 QKQKRNEEEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLE 84 (358)
Q Consensus 39 Qk~K~~EEe~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE 84 (358)
||-|+..++...++.+|..+ -..|+.+|+.|++|+..|-
T Consensus 19 ~KKk~~~~~le~~~~~L~~~-------N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKK-------NEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444 4456666666666666553
No 122
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.49 E-value=57 Score=23.21 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=20.8
Q ss_pred HHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 54 ELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 54 ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+|.+++-++.|. ||.||- .||+|...|..++++|
T Consensus 9 dlvsel~~r~e~---LE~Ri~-------~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 9 DMISDLNERSED---FEKRIV-------TLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhHH---HHHHHH-------HHHHHHHHHHHHHHcC
Confidence 567777776655 455554 5566666666666543
No 123
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.30 E-value=3.3e+02 Score=27.08 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhhhhhHHHHhhhcc
Q 040671 83 LENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSIEKEAFSIKQVVD 155 (358)
Q Consensus 83 LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSIekEa~svKqvld 155 (358)
|.+-.+.++..|+.|=+.-..|.+.|.++.--++-..+.=-..+.....-=|..-.+-+.+|+=...||..|+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567777777776666666666666554444333332223333222223333333444444455554443
No 124
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.95 E-value=53 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKET 93 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~t 93 (358)
.||.||.-|=++|+.||+.+.-||.-
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47888888888899999888877753
No 125
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.95 E-value=1.6e+02 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.4
Q ss_pred hhhhccchHHHHHhHHHHHHHHHHHHH
Q 040671 73 VSYLQNDNALLENKQKELKETINRLLQ 99 (358)
Q Consensus 73 Ik~Lenen~~LEkn~keLK~ti~~LLQ 99 (358)
++-|-.+...||...+++...++.+|-
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555543
No 126
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.87 E-value=51 Score=23.19 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.2
Q ss_pred hhhhhhhhhHHHHHhhhhHHHHH
Q 040671 163 LQKTLSAKDVVIQNLISEKEALH 185 (358)
Q Consensus 163 LqKsllvKD~~I~~L~sekqAl~ 185 (358)
|.|.+..||.-|-+|-+++..|.
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 67899999999999999988763
No 127
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.71 E-value=88 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=26.1
Q ss_pred hcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 61 STNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 61 s~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
.+-+-.+.|+.+...++.+.+.|......|+..|+.|
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777777654
No 128
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.43 E-value=91 Score=24.07 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 040671 161 PYLQKTLSAKDVVIQNLISEKEALHLEVGKLGIILQRIQDAIA 203 (358)
Q Consensus 161 v~LqKsllvKD~~I~~L~sekqAl~~El~~leiiLqrfQd~~s 203 (358)
+++.|.|-+-|.-|..|+.-+.-|-.|+.-|-.-||+.|--=+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 4566777777777999999999999999999999998886433
No 129
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=24.41 E-value=2.4e+02 Score=21.67 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=33.3
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 040671 6 LSKFKFQLQALIAETRHLKEKENSATEEIHLLVQKQKR 43 (358)
Q Consensus 6 lSkfklqLqaLisEvR~LRerE~sareE~~~~iQk~K~ 43 (358)
++-|-.-|+-.++++|.|=.|=..+..++...+++|-.
T Consensus 13 ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~ 50 (104)
T 4afl_A 13 IENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMS 50 (104)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999975
No 130
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=23.69 E-value=40 Score=26.43 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.9
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccch
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDN 80 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen 80 (358)
-+..++..++-+++||+++.|||...
T Consensus 43 ce~KLa~ln~kL~~lE~~L~iLEAkl 68 (73)
T 3pp5_A 43 TRNKLSDLNEKLTILDRQVDYLEATF 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999988654
No 131
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.64 E-value=79 Score=22.69 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHHHhhhcHHHHHHHHhhhhhhccchHHHH
Q 040671 52 LKELQSELASTNELCQKLERKVSYLQNDNALLE 84 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kIk~Lenen~~LE 84 (358)
+.+|+.++..-...-..|...|..|+.++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555545555566666666666666554
No 132
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=23.61 E-value=7.4e+02 Score=26.97 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.6
Q ss_pred hhHHHHHHhHHHHHHHhhh
Q 040671 43 RNEEEYSRNLKELQSELAS 61 (358)
Q Consensus 43 ~~EEe~~Re~~ELqaElas 61 (358)
...|..|+++-+|||+-++
T Consensus 697 a~aE~~r~~Llel~a~s~a 715 (861)
T 2zuo_A 697 SEAEKARKELLELEAMSMA 715 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhH
Confidence 4456789999999999885
No 133
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.49 E-value=2.1e+02 Score=24.44 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=9.2
Q ss_pred HHHHHHHhhhcHHHHHHHHhhh
Q 040671 52 LKELQSELASTNELCQKLERKV 73 (358)
Q Consensus 52 ~~ELqaElas~~E~~qkLE~kI 73 (358)
++||+.||.--+.-++..+..|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 134
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.25 E-value=3e+02 Score=22.24 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=14.9
Q ss_pred HhHHHHHHHhhhcHHHHHHHHhhhhhhccchHH
Q 040671 50 RNLKELQSELASTNELCQKLERKVSYLQNDNAL 82 (358)
Q Consensus 50 Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~ 82 (358)
|+..|..-+|..+.-+..-+++.++-|++.+..
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 135
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.80 E-value=5.1e+02 Score=26.88 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHH-------HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhh
Q 040671 65 LCQKLERKVSYLQNDNALLENKQKELKETINRLL-------QYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHL 137 (358)
Q Consensus 65 ~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LL-------QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl 137 (358)
.=+-|-.+|..|.|.++.+.++-++.-.-++.+. ......-+.|-+-+=+|+ |+|..|-+||+.++
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELR-------RrIqyLKekVdnQl 130 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLR-------SRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHH-------HHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3355666777777777777776665443333222 222233334444444555 45556666666654
Q ss_pred h
Q 040671 138 T 138 (358)
Q Consensus 138 ~ 138 (358)
.
T Consensus 131 s 131 (562)
T 3ghg_A 131 Q 131 (562)
T ss_dssp H
T ss_pred H
Confidence 3
No 136
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.66 E-value=63 Score=22.41 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ti 94 (358)
.||.||.-|=++|+-||+.+..|+.-+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 488888888899999999888887643
No 137
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.54 E-value=2.3e+02 Score=20.61 Aligned_cols=77 Identities=8% Similarity=0.104 Sum_probs=46.3
Q ss_pred HHhhhhhhccchHHHHHhHHHHHHHHHHHH-----HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhhhhhhhhhhh
Q 040671 69 LERKVSYLQNDNALLENKQKELKETINRLL-----QYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKINSHLTLFDSI 143 (358)
Q Consensus 69 LE~kIk~Lenen~~LEkn~keLK~ti~~LL-----QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLnshl~LFdSI 143 (358)
|+..-+-+.+-...++.....|+..++.|- ++.++|...|++..=.++.-+ ..|.-+++.|+..-.-|...
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~----~~L~~i~~~L~~~a~~~~~~ 88 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFA----QLLEDINQQLLKVADIIEQT 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 333444445555556666666666666664 357899999986444444322 24445566666666677777
Q ss_pred hhhHHH
Q 040671 144 EKEAFS 149 (358)
Q Consensus 144 ekEa~s 149 (358)
+.++++
T Consensus 89 D~~~A~ 94 (98)
T 3gwk_C 89 DADIAS 94 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 138
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.40 E-value=1.1e+02 Score=25.42 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=25.2
Q ss_pred hhhhHHHHHhhhhHHHHHHhhhhHHHHHHHH
Q 040671 168 SAKDVVIQNLISEKEALHLEVGKLGIILQRI 198 (358)
Q Consensus 168 lvKD~~I~~L~sekqAl~~El~~leiiLqrf 198 (358)
--||..|+.|..+.+.|..|++++.+=-|+.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999886544443
No 139
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.34 E-value=64 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
.||.||.-|=++|+.||+.+.-||.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5788888888888888888887765
No 140
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=22.00 E-value=2.7e+02 Score=21.38 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHH
Q 040671 64 ELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFL 105 (358)
Q Consensus 64 E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi 105 (358)
+-..+++..++-|....+..++..++|..++..|++.++.+.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555554443
No 141
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.93 E-value=1.8e+02 Score=25.68 Aligned_cols=15 Identities=13% Similarity=-0.141 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHh
Q 040671 9 FKFQLQALIAETRHL 23 (358)
Q Consensus 9 fklqLqaLisEvR~L 23 (358)
++.++..+-.++..+
T Consensus 68 ~~~~l~~~~a~l~~~ 82 (369)
T 4dk0_A 68 QINTLNTRKAALASY 82 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 142
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.71 E-value=3.2e+02 Score=22.23 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=12.2
Q ss_pred hHHHHHHHhhhcHHHHHHHHhhhhhhc
Q 040671 51 NLKELQSELASTNELCQKLERKVSYLQ 77 (358)
Q Consensus 51 e~~ELqaElas~~E~~qkLE~kIk~Le 77 (358)
...+|+.+++.-...+..|+.+|.+++
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 143
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.38 E-value=2.3e+02 Score=24.73 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHH
Q 040671 46 EEYSRNLKELQSELASTNELCQKL 69 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkL 69 (358)
++++.+..+|+.++.+....++.|
T Consensus 81 ~e~r~~~~~Lr~ql~akr~EL~aL 104 (175)
T 3lay_A 81 DDYYTQTSALRQQLISKRYEYNAL 104 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444444444444
No 144
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.25 E-value=1.7e+02 Score=28.01 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHH
Q 040671 46 EEYSRNLKELQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRL 97 (358)
Q Consensus 46 Ee~~Re~~ELqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~L 97 (358)
+....++++|+.++.+..+....++..+..|+......|..-+.|-.+|+.|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 145
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.75 E-value=62 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHhhhhhhccchHHHHHhHHHHHH
Q 040671 68 KLERKVSYLQNDNALLENKQKELKE 92 (358)
Q Consensus 68 kLE~kIk~Lenen~~LEkn~keLK~ 92 (358)
.||.||.-|=.+|+.||+.+.-||.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4788888888889999988888775
No 146
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.41 E-value=4.2e+02 Score=22.88 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=49.8
Q ss_pred HHHHhhhcHHHHHHHHhhhhhhccchHHHHHhHHHHHHHHHHHHHhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhhh
Q 040671 55 LQSELASTNELCQKLERKVSYLQNDNALLENKQKELKETINRLLQYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKIN 134 (358)
Q Consensus 55 LqaElas~~E~~qkLE~kIk~Lenen~~LEkn~keLK~ti~~LLQSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKLn 134 (358)
+..+|.-+.+-...-|.+|.-|+.+.-.+-+|.|.|.-.-..--|.-+ .|+ .+|-.|.+||-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd----~yE--------------eqIk~L~~kLK 87 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKED----KYE--------------EEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHH----HHH--------------HHHHHHHHHHH
Confidence 666777777777777777777777777776666665444333333222 233 25666666665
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccc
Q 040671 135 SHLTLFDSIEKEAFSIKQVVDNVEC 159 (358)
Q Consensus 135 shl~LFdSIekEa~svKqvld~vq~ 159 (358)
---.=.+-.++.|..+-..+|+...
T Consensus 88 EAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 88 EAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444455555555555555554443
No 147
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.39 E-value=52 Score=25.91 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=19.4
Q ss_pred HHHhhhcHHHHHHHHhhhhhhccc
Q 040671 56 QSELASTNELCQKLERKVSYLQND 79 (358)
Q Consensus 56 qaElas~~E~~qkLE~kIk~Lene 79 (358)
+.-++..++-+++||+++.|||..
T Consensus 44 e~KLa~ln~KL~~LEr~L~iLEAk 67 (75)
T 3p8c_E 44 RSRLATLNEKLTALERRIEYIEAR 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888889999999988754
No 148
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.19 E-value=1.5e+02 Score=23.73 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=19.1
Q ss_pred hhhhhhccchHHHHHhHHHHHHHH
Q 040671 71 RKVSYLQNDNALLENKQKELKETI 94 (358)
Q Consensus 71 ~kIk~Lenen~~LEkn~keLK~ti 94 (358)
-||.-|+||--|-|++.+.-|..|
T Consensus 33 ~kv~elEnErlQyEkKLKsTK~El 56 (81)
T 3qh9_A 33 IKVEELENERNQYEWKLKATKAEV 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 357789999999999988888443
No 149
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.06 E-value=2.2e+02 Score=23.10 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.9
Q ss_pred hhccchHHHHHhHHHHHHHHHHHH----HhhHHHHHHHhhhhhhhHhhhhhcchhhHHHHHhh
Q 040671 75 YLQNDNALLENKQKELKETINRLL----QYRENFLSAYEESTCDMKRAIETRDRKLTVLHEKI 133 (358)
Q Consensus 75 ~Lenen~~LEkn~keLK~ti~~LL----QSRE~Fi~~Ye~stcemk~sIe~~dr~l~VlsEKL 133 (358)
-|+.=+..|......|.++..+|= |-|..|...|++..--|++-++.-+.++--|.+||
T Consensus 17 ~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i 79 (94)
T 3fx7_A 17 HLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHH
Confidence 344445556666666677777763 45888999999999899998888888888877776
Done!