Query 040673
Match_columns 291
No_of_seqs 302 out of 1701
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.5E-87 3.2E-92 620.3 35.2 291 1-291 1-291 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 3.4E-83 7.3E-88 587.0 33.0 261 23-286 2-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 2E-43 4.3E-48 313.9 25.1 177 33-223 12-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 6.6E-37 1.4E-41 273.0 25.2 174 31-221 25-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 2.2E-35 4.7E-40 255.9 17.5 172 29-206 3-183 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 1.5E-32 3.2E-37 242.4 24.1 172 32-221 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 2.6E-31 5.6E-36 243.8 23.7 179 35-221 55-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 2.5E-31 5.4E-36 239.7 22.8 178 33-221 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 1.9E-28 4.2E-33 226.2 21.6 170 37-221 43-268 (269)
10 cd02182 GH16_Strep_laminarinas 100.0 4.1E-28 8.9E-33 222.7 20.6 180 34-221 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 100.0 5.4E-28 1.2E-32 225.8 19.9 183 32-221 35-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.9 2.5E-26 5.4E-31 218.0 18.9 135 60-196 103-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 3.9E-26 8.4E-31 215.8 18.1 133 59-193 99-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.8E-24 3.8E-29 206.5 19.1 175 33-218 74-262 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 5E-22 1.1E-26 139.4 4.2 46 240-286 6-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 7.3E-15 1.6E-19 144.7 13.7 191 35-237 158-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.4 1.9E-12 4E-17 120.6 12.6 153 38-196 42-251 (293)
18 PF13385 Laminin_G_3: Concanav 91.2 5.7 0.00012 31.5 11.7 68 139-224 83-150 (157)
19 smart00560 LamGL LamG-like jel 88.7 12 0.00025 30.5 13.7 71 139-226 59-131 (133)
20 PF06439 DUF1080: Domain of Un 88.2 6.1 0.00013 33.4 10.1 100 58-170 43-156 (185)
21 PF09264 Sial-lect-inser: Vibr 86.5 1.2 2.6E-05 39.3 4.7 105 50-167 10-120 (198)
22 smart00210 TSPN Thrombospondin 85.8 14 0.0003 32.0 11.1 87 72-168 56-144 (184)
23 PF10287 DUF2401: Putative TOS 80.8 6.7 0.00015 35.9 7.2 78 71-153 102-207 (235)
24 cd00110 LamG Laminin G domain; 74.5 42 0.00092 26.8 14.7 27 140-166 79-105 (151)
25 smart00159 PTX Pentraxin / C-r 72.8 32 0.00069 30.3 9.2 77 139-226 88-166 (206)
26 PF14099 Polysacc_lyase: Polys 71.3 51 0.0011 29.0 10.3 55 134-192 145-204 (224)
27 PF09224 DUF1961: Domain of un 63.7 25 0.00055 31.8 6.6 58 142-220 160-218 (218)
28 PF02210 Laminin_G_2: Laminin 58.9 80 0.0017 24.2 9.7 76 139-222 52-127 (128)
29 cd00152 PTX Pentraxins are pla 55.9 80 0.0017 27.6 8.5 77 139-226 88-166 (201)
30 smart00282 LamG Laminin G doma 55.5 55 0.0012 26.0 6.9 27 140-166 61-87 (135)
31 PF02973 Sialidase: Sialidase, 50.3 1.8E+02 0.004 25.8 11.8 135 65-226 30-178 (190)
32 KOG1834 Calsyntenin [Extracell 40.5 34 0.00075 36.0 4.0 52 140-196 441-492 (952)
33 cd06526 metazoan_ACD Alpha-cry 26.9 1.4E+02 0.0031 22.0 4.6 44 35-81 18-61 (83)
34 PRK02710 plastocyanin; Provisi 26.4 1.8E+02 0.004 23.2 5.5 18 34-52 43-60 (119)
35 KOG4352 Fas-mediated apoptosis 25.9 1.3E+02 0.0028 26.0 4.5 36 130-166 92-127 (187)
36 KOG0674 Calreticulin [Posttran 24.4 6.7E+02 0.014 24.4 11.2 24 143-166 170-194 (406)
37 PF06832 BiPBP_C: Penicillin-B 22.4 1.1E+02 0.0023 23.0 3.2 34 154-189 44-77 (89)
38 cd06482 ACD_HspB10 Alpha cryst 21.6 1.5E+02 0.0032 22.7 3.8 47 35-81 19-65 (87)
39 PF15240 Pro-rich: Proline-ric 21.3 43 0.00094 29.5 0.8 8 24-31 16-23 (179)
40 COG3354 FlaG Putative archaeal 20.7 1.4E+02 0.003 25.6 3.7 34 25-59 46-81 (154)
41 PF13473 Cupredoxin_1: Cupredo 20.4 1.2E+02 0.0026 23.4 3.2 23 34-57 31-53 (104)
42 cd06470 ACD_IbpA-B_like Alpha- 20.2 1.6E+02 0.0034 22.3 3.8 47 35-81 22-71 (90)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.5e-87 Score=620.30 Aligned_cols=291 Identities=75% Similarity=1.307 Sum_probs=258.6
Q ss_pred CcchhhHHHHHHHHHHHhccccccccccccceeeeeCCCeEEecCCcEEEEEEecCCCCeeEEceeeEeEEEEEEEEecC
Q 040673 1 MASLQTFSMVLFFTAIAFHQDFVIAKFSKSMYINWGAHHSAIVGNGEDLNLVLDQSSGSGAQSKISFLFGSIEMLIKLVP 80 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGsgi~Sk~~~~YG~~e~riKlp~ 80 (291)
|||+..+-+.+++++++.....+..+|.++|.++|+.+|+.+.++|+.|+|+||+.+|++|+||+.|+||+||+|||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~ 80 (291)
T PLN03161 1 MASLKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVP 80 (291)
T ss_pred ChhHHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCC
Confidence 78873322222222222223335678999999999999999988887899999999999999999999999999999999
Q ss_pred CCCCceEEEEEEecCCCCCCeeeeecCCCCCCCCeEEEeeeeeCCCCCceeeEecCCCCCCCcEEEEEEEcCCeEEEEEc
Q 040673 81 GNSAGTVTAYYLTSSGSQHDEIDFEFLGNVSGQPYIIHTNIYTQGKGDREQQFYLWFDPTADYHNYTIHWNPTEVVWYVD 160 (291)
Q Consensus 81 g~s~G~v~AFwl~~~~~~~~EID~E~lG~~~g~p~~~~tnv~~~g~g~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVD 160 (291)
|+++|+||||||++.++.+|||||||||+++++|+++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+||||
T Consensus 81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD 160 (291)
T PLN03161 81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD 160 (291)
T ss_pred CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence 88899999999999777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEeeeecCCCCCcCcCCCCCCC
Q 040673 161 SVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRFRARACKWNGPVSISRCATKTPG 240 (291)
Q Consensus 161 G~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~c~~~~~~ 240 (291)
|++||++++.+..|.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|++++|.+++..+...|..++..
T Consensus 161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~ 240 (291)
T PLN03161 161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPS 240 (291)
T ss_pred CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCcc
Confidence 99999999877778899987899999999999999999999999999999999999999999988653123469754225
Q ss_pred CCCCCCCccCCCHHHHHHHHHHhhcCeeeecccCCCCCCCCCCCCCCCCCC
Q 040673 241 NWWTSPTYSQLSSARMGQLKWVREKYMIYNYCKDTKRFNGKMAPECSKPQY 291 (291)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec~~~~~ 291 (291)
.||+++.|+.|+++|+++|+|||+||||||||+|++|||+++||||.++++
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~~ 291 (291)
T PLN03161 241 NWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQF 291 (291)
T ss_pred ccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCcC
Confidence 799999999999999999999999999999999999999878999999875
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=3.4e-83 Score=586.97 Aligned_cols=261 Identities=52% Similarity=1.025 Sum_probs=244.5
Q ss_pred ccccccccceeeeeCCCeEEecCCcEEEEEEecCCCCeeEEceeeEeEEEEEEEEecCCCCCceEEEEEEecCC-CCCCe
Q 040673 23 VIAKFSKSMYINWGAHHSAIVGNGEDLNLVLDQSSGSGAQSKISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSG-SQHDE 101 (291)
Q Consensus 23 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGsgi~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~-~~~~E 101 (291)
++.+|.++|.++|+++||++.++|+.|+|+||+.+|++|.|++.|+||+||||||||+|+++|+||||||++++ |.++|
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~E 81 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDE 81 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCe
Confidence 35679999999999999999988889999999999999999999999999999999998889999999999987 88999
Q ss_pred eeeecCCCCCCCCeEEEeeeeeCCCCCceeeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCCCC
Q 040673 102 IDFEFLGNVSGQPYIIHTNIYTQGKGDREQQFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPNKQ 181 (291)
Q Consensus 102 ID~E~lG~~~g~p~~~~tnv~~~g~g~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 181 (291)
||||++|+.+|+|+++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++
T Consensus 82 ID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 161 (263)
T cd02176 82 IDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQ 161 (263)
T ss_pred EEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877788999889
Q ss_pred cceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEeeeecCCCCCcCcCCCCCCCCCCCCCCccCCCHHHHHHHHH
Q 040673 182 GMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRFRARACKWNGPVSISRCATKTPGNWWTSPTYSQLSSARMGQLKW 261 (291)
Q Consensus 182 Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (291)
||+|++|||+||+|||+||++|+||+++||+|.|++|+|.+|.+++ ....|.......||+.+.+++|+++|+++|+|
T Consensus 162 Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (263)
T cd02176 162 PMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDP--GDSFSSCSCTEDWWNGSTYQQLSANQQRAMEW 239 (263)
T ss_pred eEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCC--CCccccCCCccccccccccccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 34456543224699999999999999999999
Q ss_pred HhhcCeeeecccCCCCCCCCCCCCC
Q 040673 262 VREKYMIYNYCKDTKRFNGKMAPEC 286 (291)
Q Consensus 262 ~~~~~~~y~yc~d~~r~~~~~~~ec 286 (291)
||+||||||||+|++|||. +||||
T Consensus 240 ~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 240 VRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHHCCEEEecCCCCCcCCC-CcCCC
Confidence 9999999999999999995 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2e-43 Score=313.94 Aligned_cols=177 Identities=27% Similarity=0.582 Sum_probs=153.7
Q ss_pred eeeeCCCeEEecCCcEEEEEEecC-CCCeeEEceeeEeEEEEEEEEecCCCCCceEEEEEEecCCCCCCeeeeecCCCCC
Q 040673 33 INWGAHHSAIVGNGEDLNLVLDQS-SGSGAQSKISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSGSQHDEIDFEFLGNVS 111 (291)
Q Consensus 33 ~~w~~~nv~~~~~G~~l~L~ld~~-sGsgi~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~~~~~EID~E~lG~~~ 111 (291)
.+...++|.+.++ +|+|+|++. +|++|.|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 12 ~~~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~-- 83 (203)
T cd02183 12 WTVTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG-- 83 (203)
T ss_pred cEecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC--
Confidence 3456788888743 599999987 6899999999999999999999998 899999999987 679999999996
Q ss_pred CCCeEEEeeeeeCCCC---CceeeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc-CCccCCCCCcceEEE
Q 040673 112 GQPYIIHTNIYTQGKG---DREQQFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEK-EGIAYPNKQGMRTHV 187 (291)
Q Consensus 112 g~p~~~~tnv~~~g~g---~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~~Pm~l~l 187 (291)
++..+|+|+|.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+.+||. +||+|++
T Consensus 84 -~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~l 161 (203)
T cd02183 84 -DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQI 161 (203)
T ss_pred -CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEEE
Confidence 466899999977654 345667788888899999999999999999999999999987543 3567996 9999999
Q ss_pred EeeeCCC---------CCCCCCccccCCCCCCEEEEEeEEEEeee
Q 040673 188 SIWNADN---------WATRGGLDKIDWSNAPFIARLRRFRARAC 223 (291)
Q Consensus 188 nlW~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c 223 (291)
|+|.||+ || ||. +||+.+||+|.|++|+|..+
T Consensus 162 n~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 162 GIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEeC
Confidence 9999985 88 775 79999999999999998654
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=6.6e-37 Score=273.03 Aligned_cols=174 Identities=27% Similarity=0.567 Sum_probs=147.8
Q ss_pred ceeeeeCCCeEEecCCcEEEEEEecCC-------CCeeEEceeeEeEEEEEEEEecCCCCCceEEEEEEecC---CCCCC
Q 040673 31 MYINWGAHHSAIVGNGEDLNLVLDQSS-------GSGAQSKISFLFGSIEMLIKLVPGNSAGTVTAYYLTSS---GSQHD 100 (291)
Q Consensus 31 f~~~w~~~nv~~~~~G~~l~L~ld~~s-------Gsgi~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~---~~~~~ 100 (291)
...+|.++||.+.+ | .|+|++.+.. +++|.|+.+|+||+||+|||+|.+ +|+||||||++. +..++
T Consensus 25 ~~~~~~~~nv~v~~-g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~ 100 (212)
T cd02175 25 FNCTWSADNVEFSD-G-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHD 100 (212)
T ss_pred EeeeEccccEEEEC-C-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCC
Confidence 34578899999984 5 6999986553 578999999999999999999987 899999999974 24579
Q ss_pred eeeeecCCCCCCCCeEEEeeeeeCCCCCceeeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCCC
Q 040673 101 EIDFEFLGNVSGQPYIIHTNIYTQGKGDREQQFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPNK 180 (291)
Q Consensus 101 EID~E~lG~~~g~p~~~~tnv~~~g~g~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~ 180 (291)
|||||++|++ +..+++|+|.++.++.+..+.+.+++.++||+|+|+|+|++|+|||||+++++++..+ ..+|.
T Consensus 101 EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~- 173 (212)
T cd02175 101 EIDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD- 173 (212)
T ss_pred EEEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-
Confidence 9999999975 3468899988877666666778889999999999999999999999999999998753 35787
Q ss_pred CcceEEEEeeeCC---CCCCCCCccccCCCCCCEEEEEeEEEEe
Q 040673 181 QGMRTHVSIWNAD---NWATRGGLDKIDWSNAPFIARLRRFRAR 221 (291)
Q Consensus 181 ~Pm~l~lnlW~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (291)
+||+|++|+|.++ +|+ |. +|. .+|+.|+|++||+.
T Consensus 174 ~p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 174 TPGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CCcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 9999999999985 598 54 466 89999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=2.2e-35 Score=255.89 Aligned_cols=172 Identities=33% Similarity=0.641 Sum_probs=146.6
Q ss_pred ccceeeeeCCCeEEecCCcEEEEEEec-----CCCCeeEEceeeEeEEEEEEEEecCCCCCceEEEEEEecC--CCCCCe
Q 040673 29 KSMYINWGAHHSAIVGNGEDLNLVLDQ-----SSGSGAQSKISFLFGSIEMLIKLVPGNSAGTVTAYYLTSS--GSQHDE 101 (291)
Q Consensus 29 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~sGsgi~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~--~~~~~E 101 (291)
+.+.++|+++||++.++ ..|.|++++ .++++|.|+..++||+||+|||++.+ +|+|+||||.+. .+.++|
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 56889999999999875 479999987 35688999999999999999998876 899999999753 278999
Q ss_pred eeeecCCCCCCCCeEEEeeeeeCCCCCc--eeeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCC
Q 040673 102 IDFEFLGNVSGQPYIIHTNIYTQGKGDR--EQQFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPN 179 (291)
Q Consensus 102 ID~E~lG~~~g~p~~~~tnv~~~g~g~~--e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 179 (291)
||||++|++.. .+++|+|..+.+.. +.++.+.+++.++||+|+|+|+|++|+|||||++++++......+.+||.
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998543 59999998888765 45677788999999999999999999999999999999987654446897
Q ss_pred CCcceEEEEeeeCCCCCCCCCccccCC
Q 040673 180 KQGMRTHVSIWNADNWATRGGLDKIDW 206 (291)
Q Consensus 180 ~~Pm~l~lnlW~gg~Wat~GG~~~~d~ 206 (291)
..||+|.+++|.+++|++..|+++|||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~~m~vDw 183 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAGEMEVDW 183 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSECEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCCEEEEEe
Confidence 789999999999999987666544443
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.5e-32 Score=242.37 Aligned_cols=172 Identities=29% Similarity=0.527 Sum_probs=143.0
Q ss_pred eeeeeCCCeEEecCCcEEEEEEecCC------CCeeEE-ceeeEeEEEEEEEEecCCCCCceEEEEEEecCC---CCCCe
Q 040673 32 YINWGAHHSAIVGNGEDLNLVLDQSS------GSGAQS-KISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSG---SQHDE 101 (291)
Q Consensus 32 ~~~w~~~nv~~~~~G~~l~L~ld~~s------Gsgi~S-k~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~---~~~~E 101 (291)
...|+++||.+.++| .|.|++.+.+ +++|.| ++.|+||+||+|||++.+ .|+|+||||++.+ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 357889999998756 6999986543 478999 999999999999999987 8999999999985 56999
Q ss_pred eeeecCCCCCCCCeEEEeeeeeCCCC-----CceeeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCcc
Q 040673 102 IDFEFLGNVSGQPYIIHTNIYTQGKG-----DREQQFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIA 176 (291)
Q Consensus 102 ID~E~lG~~~g~p~~~~tnv~~~g~g-----~~e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 176 (291)
||||++|++ +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999875 45688888865543 2234455666678999999999999999999999999998753
Q ss_pred CCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 040673 177 YPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRFRAR 221 (291)
Q Consensus 177 ~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (291)
+|. +||+|+||+|.+++|++. .+....|..+.|++|||.
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~~~-----~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWWWG-----GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCC-CCcEEEEEEEECCCCccc-----CCCCCCCcEEEEEEEEEC
Confidence 676 999999999999988732 245678999999999984
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.6e-31 Score=243.81 Aligned_cols=179 Identities=20% Similarity=0.235 Sum_probs=135.8
Q ss_pred eeCCCeEEecCCcEEEEEEecCC-----------CCeeEEceeeEeEEEEEEEEecCCCCCceEEEEEEecCC-CCCCee
Q 040673 35 WGAHHSAIVGNGEDLNLVLDQSS-----------GSGAQSKISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSG-SQHDEI 102 (291)
Q Consensus 35 w~~~nv~~~~~G~~l~L~ld~~s-----------Gsgi~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~-~~~~EI 102 (291)
+.++||.+.+ | .|.|+..+.. ++.|.|++.|+|||||+|||+|.+ . .+|||||++.. +.++||
T Consensus 55 y~~~nv~v~~-G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEI 129 (258)
T cd02178 55 FSADNVSVED-G-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEI 129 (258)
T ss_pred EccCCeEEEC-C-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcE
Confidence 4468888874 6 6889886543 256899999999999999999976 4 58999999874 689999
Q ss_pred e-eecCCCCC--CCCeEEEeeeeeCCCC-----Cc---eeeEecCCCCCCCcEEEEEEEc-CCeEEEEEcCeeEEEEecc
Q 040673 103 D-FEFLGNVS--GQPYIIHTNIYTQGKG-----DR---EQQFYLWFDPTADYHNYTIHWN-PTEVVWYVDSVPIRVFRNY 170 (291)
Q Consensus 103 D-~E~lG~~~--g~p~~~~tnv~~~g~g-----~~---e~~~~l~fd~~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~ 170 (291)
| ||++|+.. ..+..+|+++|..+.+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.
T Consensus 130 DI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~ 209 (258)
T cd02178 130 DILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENS 209 (258)
T ss_pred EhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCc
Confidence 9 79999763 2245688887642221 11 1234455667899999999999 9999999999999999875
Q ss_pred ccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 040673 171 EKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRFRAR 221 (291)
Q Consensus 171 ~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (291)
+. ....|+++||+|+||++.|+ |+...+.. ..-...|..|.|++|||+
T Consensus 210 ~~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 210 EI-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cc-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 43 23467779999999999988 98321221 122356999999999996
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=2.5e-31 Score=239.66 Aligned_cols=178 Identities=22% Similarity=0.413 Sum_probs=141.2
Q ss_pred eeeeCCCeEEecCCcEEEEEEecCC----------CCeeEE--ceeeEeEEEEEEEEecCCCCCceEEEEEEecCC----
Q 040673 33 INWGAHHSAIVGNGEDLNLVLDQSS----------GSGAQS--KISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSG---- 96 (291)
Q Consensus 33 ~~w~~~nv~~~~~G~~l~L~ld~~s----------Gsgi~S--k~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~---- 96 (291)
..+.++||.+.+ | .|.|+..+.+ ++.|.| ++.|+|||||||||+|.+ +|++|||||+++.
T Consensus 33 ~~~~~~nv~v~~-G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVED-G-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEEC-C-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 456889999874 6 6888875433 246899 899999999999999987 8999999999873
Q ss_pred --CCCCeee-eecCCCCCCCCeEEEeeeeeCCCC----CceeeEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 040673 97 --SQHDEID-FEFLGNVSGQPYIIHTNIYTQGKG----DREQQFYLWF-DPTADYHNYTIHWNPTEVVWYVDSVPIRVFR 168 (291)
Q Consensus 97 --~~~~EID-~E~lG~~~g~p~~~~tnv~~~g~g----~~e~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 168 (291)
+..+||| +|++|+. +..+++++|..+.. .....+.... +..++||+|+++|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 4578999 6999985 45788888876643 2233455554 6889999999999999999999999999998
Q ss_pred ccccCC-ccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEe
Q 040673 169 NYEKEG-IAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRFRAR 221 (291)
Q Consensus 169 ~~~~~g-~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (291)
+..... ..+|.++||+|+||++.+++|+ |.. ..-...|..+.|++|||+
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 764321 2345569999999999999998 431 234568999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.96 E-value=1.9e-28 Score=226.18 Aligned_cols=170 Identities=25% Similarity=0.308 Sum_probs=125.5
Q ss_pred CCCeEEecCCcEEEEEEecC-------------------CCCeeEEceeeEeEEEEEEEEecC-CCCCceEEEEEEecC-
Q 040673 37 AHHSAIVGNGEDLNLVLDQS-------------------SGSGAQSKISFLFGSIEMLIKLVP-GNSAGTVTAYYLTSS- 95 (291)
Q Consensus 37 ~~nv~~~~~G~~l~L~ld~~-------------------sGsgi~Sk~~~~YG~~e~riKlp~-g~s~G~v~AFwl~~~- 95 (291)
++||.+. +| .|.|+..+. +++.|.|+.+|+|||||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v~-dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVIS-NG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEEe-CC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 5788776 47 688888553 124588899999999999999865 5 899999999975
Q ss_pred --------CCCCCeee-eecCCCC---CCCCe----EEEeeeeeCCCCC--c--------eeeEecCCCCCCCcEEEEEE
Q 040673 96 --------GSQHDEID-FEFLGNV---SGQPY----IIHTNIYTQGKGD--R--------EQQFYLWFDPTADYHNYTIH 149 (291)
Q Consensus 96 --------~~~~~EID-~E~lG~~---~g~p~----~~~tnv~~~g~g~--~--------e~~~~l~fd~~~dfHtY~i~ 149 (291)
.|.++||| ||.+|.. .++++ ++|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 26789999 7887753 12233 4555555454331 1 12355778899999999999
Q ss_pred EcCCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCC---------CCCCCCCccccCCCCCCEEEEEeEEEE
Q 040673 150 WNPTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNAD---------NWATRGGLDKIDWSNAPFIARLRRFRA 220 (291)
Q Consensus 150 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v 220 (291)
|+|++|+|||||++++++.+. +.. .||.|.+++-... .|+ |+. .+.+..|-.|++++|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w~-~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YWH-RPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------ccc-cccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998642 333 8888888874432 244 333 35678999999999999
Q ss_pred e
Q 040673 221 R 221 (291)
Q Consensus 221 ~ 221 (291)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 6
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=4.1e-28 Score=222.74 Aligned_cols=180 Identities=13% Similarity=0.152 Sum_probs=124.6
Q ss_pred eeeCCCeEEecCCcEEEEEEecCC-C----CeeEEceee--Ee----EEEEEEEEecCCC---CCceEEEEEEecCC---
Q 040673 34 NWGAHHSAIVGNGEDLNLVLDQSS-G----SGAQSKISF--LF----GSIEMLIKLVPGN---SAGTVTAYYLTSSG--- 96 (291)
Q Consensus 34 ~w~~~nv~~~~~G~~l~L~ld~~s-G----sgi~Sk~~~--~Y----G~~e~riKlp~g~---s~G~v~AFwl~~~~--- 96 (291)
+.+++|+.+..+| .|.|+..+.. + +.|.|+.++ .| |+||||||+|.+. ..|+||||||++..
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4567899987567 6888876553 2 468886554 33 4899999999741 37999999999851
Q ss_pred -----CCCCeee-eecCCCCCCCCeEEEeeeeeCC-CC--Cceee-Ee-cCCCCCCCcEEEEEEEcC-----CeEEEEEc
Q 040673 97 -----SQHDEID-FEFLGNVSGQPYIIHTNIYTQG-KG--DREQQ-FY-LWFDPTADYHNYTIHWNP-----TEVVWYVD 160 (291)
Q Consensus 97 -----~~~~EID-~E~lG~~~g~p~~~~tnv~~~g-~g--~~e~~-~~-l~fd~~~dfHtY~i~Wtp-----~~I~fyVD 160 (291)
|..+||| ||..|.. +...+ ++|... .+ ..+.. .. ......++||+|+|+|++ ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEE-EEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 5678999 8999854 33333 344321 11 11111 10 011245899999999997 99999999
Q ss_pred CeeEEEEeccccC---CccCCCCCcceEEEEeeeCCCCCCCCCccc-cCCCCCCEEEEEeEEEEe
Q 040673 161 SVPIRVFRNYEKE---GIAYPNKQGMRTHVSIWNADNWATRGGLDK-IDWSNAPFIARLRRFRAR 221 (291)
Q Consensus 161 G~~vr~~~~~~~~---g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~-~d~~~~Pf~a~~~~~~v~ 221 (291)
|+++++++..... ..+.|.++||+|+||++.||+|+ |.+. ..-...|-.|.|++|||+
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 9999999864221 12234459999999999999998 3321 122457899999999996
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=5.4e-28 Score=225.78 Aligned_cols=183 Identities=21% Similarity=0.271 Sum_probs=126.1
Q ss_pred eeeeeCCCeEEecCCcEEEEEEecCC-------CCeeEE--ceeeEeEEEEEEEEecCC-CCCceEEEEEEecCC-----
Q 040673 32 YINWGAHHSAIVGNGEDLNLVLDQSS-------GSGAQS--KISFLFGSIEMLIKLVPG-NSAGTVTAYYLTSSG----- 96 (291)
Q Consensus 32 ~~~w~~~nv~~~~~G~~l~L~ld~~s-------Gsgi~S--k~~~~YG~~e~riKlp~g-~s~G~v~AFwl~~~~----- 96 (291)
...+.++|+.+. +| .|.|+..+.. .+.|.| |+.|+||+||||||||.+ ...|+||||||+++.
T Consensus 35 ~q~Y~~~nv~v~-~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~ 112 (295)
T cd02180 35 LEWYDPDAVTTI-NG-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGY 112 (295)
T ss_pred eEEecCcCeEec-CC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccc
Confidence 345678899886 46 6888886532 245888 788999999999999963 247999999999841
Q ss_pred --------CC------CCeee-eecCCCCC-CCCe---EEE----------------eeeeeC------C-CCCcee-eE
Q 040673 97 --------SQ------HDEID-FEFLGNVS-GQPY---IIH----------------TNIYTQ------G-KGDREQ-QF 133 (291)
Q Consensus 97 --------~~------~~EID-~E~lG~~~-g~p~---~~~----------------tnv~~~------g-~g~~e~-~~ 133 (291)
|. .+||| ||.+|... .... ++| ..+|.. . .+...+ ..
T Consensus 113 ~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 192 (295)
T cd02180 113 LATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAI 192 (295)
T ss_pred cccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccc
Confidence 32 48999 89998532 0111 111 111211 0 011000 00
Q ss_pred ----ecCC----CCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEeccccC--C----ccCCCCCcceEEEEeeeCCC
Q 040673 134 ----YLWF----DPTADYHNYTIHWNP-----TEVVWYVDSVPIRVFRNYEKE--G----IAYPNKQGMRTHVSIWNADN 194 (291)
Q Consensus 134 ----~l~f----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~--g----~~~P~~~Pm~l~lnlW~gg~ 194 (291)
.+.- ...++||+|+|+|+| ++|+|||||+++++++..... + .++|. +||+|+||+++||+
T Consensus 193 ~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~-~P~ylILNlAvGg~ 271 (295)
T cd02180 193 SCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPE-EPMYIILNLGISSN 271 (295)
T ss_pred ccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCC-CCeEEEEEEEeccc
Confidence 1111 125789999999999 899999999999999865321 1 24564 99999999999999
Q ss_pred CCCCCCccccCCCCCCEEEEEeEEEEe
Q 040673 195 WATRGGLDKIDWSNAPFIARLRRFRAR 221 (291)
Q Consensus 195 Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (291)
|+ |. +.+-...|-.|+||+|||+
T Consensus 272 w~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 272 FQ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred cC---CC-CcccCCCCCEEEEEEEEEE
Confidence 97 43 2344567999999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=2.5e-26 Score=217.96 Aligned_cols=135 Identities=20% Similarity=0.245 Sum_probs=101.8
Q ss_pred eeEE--ceeeEeEEEEEEEEecCCCCCceEEEEEEecCC------CCCCeee-eecCCCCCCCC-------eEEEeeeee
Q 040673 60 GAQS--KISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSG------SQHDEID-FEFLGNVSGQP-------YIIHTNIYT 123 (291)
Q Consensus 60 gi~S--k~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~------~~~~EID-~E~lG~~~g~p-------~~~~tnv~~ 123 (291)
.|.| |+.|+|||||+|||||.| .|+||||||++.. |..+||| ||..|+....+ ..++.++|.
T Consensus 103 ri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~ 180 (330)
T cd08024 103 RLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHW 180 (330)
T ss_pred EEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEEe
Confidence 3667 688999999999999998 8999999999862 6789999 89999754221 235555653
Q ss_pred CCCCC----cee---eEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccc-------------------cCCccC
Q 040673 124 QGKGD----REQ---QFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYE-------------------KEGIAY 177 (291)
Q Consensus 124 ~g~g~----~e~---~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~~~ 177 (291)
..... +.. ......+.+++||+|+|+|+|++|+|||||+++++++... ..+...
T Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~a 260 (330)
T cd08024 181 GPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMA 260 (330)
T ss_pred CCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCC
Confidence 22111 111 1112245678899999999999999999999999998521 112456
Q ss_pred CCCCcceEEEEeeeCCCCC
Q 040673 178 PNKQGMRTHVSIWNADNWA 196 (291)
Q Consensus 178 P~~~Pm~l~lnlW~gg~Wa 196 (291)
|+++|+||+|||++||.|.
T Consensus 261 PFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 261 PFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCEEEEEEEEecCCCC
Confidence 8999999999999999885
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=3.9e-26 Score=215.80 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=96.5
Q ss_pred CeeEE--ceeeEeEEEEEEEEecCCCCCceEEEEEEecCC-------CCCCeee-eecCCCCC----CC---CeEEEeee
Q 040673 59 SGAQS--KISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSG-------SQHDEID-FEFLGNVS----GQ---PYIIHTNI 121 (291)
Q Consensus 59 sgi~S--k~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~-------~~~~EID-~E~lG~~~----g~---p~~~~tnv 121 (291)
+.|.| ++.|+|||||+|||||.| .|+||||||++.+ |..+||| ||..|+.. |. ..+++...
T Consensus 99 ari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~ 176 (321)
T cd02179 99 ARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGP 176 (321)
T ss_pred eeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEccc
Confidence 34777 588999999999999999 8999999999862 4679999 89999852 10 01233333
Q ss_pred eeCCCC-Ccee---eEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc----------------CCccCCCCC
Q 040673 122 YTQGKG-DREQ---QFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEK----------------EGIAYPNKQ 181 (291)
Q Consensus 122 ~~~g~g-~~e~---~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P~~~ 181 (291)
+..... .+.. ......+.+++||+|+|+|+|++|+|||||++++++..... .....|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~ 256 (321)
T cd02179 177 VLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDK 256 (321)
T ss_pred ccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCC
Confidence 221111 1110 11112346789999999999999999999999999986321 123468899
Q ss_pred cceEEEEeeeCC
Q 040673 182 GMRTHVSIWNAD 193 (291)
Q Consensus 182 Pm~l~lnlW~gg 193 (291)
|++|+|||++||
T Consensus 257 ~FyliLNlAVGG 268 (321)
T cd02179 257 EFYLSLGVGVGG 268 (321)
T ss_pred CeEEEEEEEecC
Confidence 999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.8e-24 Score=206.49 Aligned_cols=175 Identities=23% Similarity=0.370 Sum_probs=137.5
Q ss_pred eeeeCCCeEEecCCcEEEEEEecC-------CCCeeEEcee--eEeEEEEEEEEecCCCCCceEEEEEEecC----CCCC
Q 040673 33 INWGAHHSAIVGNGEDLNLVLDQS-------SGSGAQSKIS--FLFGSIEMLIKLVPGNSAGTVTAYYLTSS----GSQH 99 (291)
Q Consensus 33 ~~w~~~nv~~~~~G~~l~L~ld~~-------sGsgi~Sk~~--~~YG~~e~riKlp~g~s~G~v~AFwl~~~----~~~~ 99 (291)
.+|..+++.+..+| .|.|.+++. .++.++|..+ |+||++|+|||+|.+ .|+||||||+++ +..+
T Consensus 74 ~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 46777788887766 688887653 2356888666 999999999999976 999999999985 3567
Q ss_pred CeeeeecCCCCCCCCeEEEeeeeeCCCCCceeeEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCC
Q 040673 100 DEIDFEFLGNVSGQPYIIHTNIYTQGKGDREQQFYLWF-DPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYP 178 (291)
Q Consensus 100 ~EID~E~lG~~~g~p~~~~tnv~~~g~g~~e~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 178 (291)
+|||+|++|+... +..+|+|.+.++.++.+....+.+ +..++||+|.++|.++.|+|||||++++++... .++|
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 9999999997543 345999999999888777666677 888999999999999999999999999998864 3458
Q ss_pred CCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEE
Q 040673 179 NKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRF 218 (291)
Q Consensus 179 ~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 218 (291)
+ .||++++|+|.++.+.+.-|. ..+...|..+.+..+
T Consensus 226 ~-~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 262 (355)
T COG2273 226 Q-IPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYRV 262 (355)
T ss_pred C-CcceeEEeecccCccCCCccc--cccCCcceEeeeeee
Confidence 7 999999999998876532232 233344555555443
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.85 E-value=5e-22 Score=139.38 Aligned_cols=46 Identities=50% Similarity=1.175 Sum_probs=40.1
Q ss_pred CCCCCCCCccCCCHHHHHHHHHHhhcCeeeecccCCCCCCCCCCCCC
Q 040673 240 GNWWTSPTYSQLSSARMGQLKWVREKYMIYNYCKDTKRFNGKMAPEC 286 (291)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 286 (291)
..||+++.++ |+++|+++|+|||+||||||||+|++|||.++|+||
T Consensus 6 ~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 6 KSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 6799998888 999999999999999999999999999998779999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.61 E-value=7.3e-15 Score=144.66 Aligned_cols=191 Identities=22% Similarity=0.356 Sum_probs=125.2
Q ss_pred eeCCCeEEecCCcEEEEEEecCC--C----Ce-eEE--ceeeEeEEEEEEEEecCC-CCCceEEEEEEecC---------
Q 040673 35 WGAHHSAIVGNGEDLNLVLDQSS--G----SG-AQS--KISFLFGSIEMLIKLVPG-NSAGTVTAYYLTSS--------- 95 (291)
Q Consensus 35 w~~~nv~~~~~G~~l~L~ld~~s--G----sg-i~S--k~~~~YG~~e~riKlp~g-~s~G~v~AFwl~~~--------- 95 (291)
++++.|+.. +| .|+|++++.. + || ++| |+-|+-|++|++++||.. +..|+|||||++++
T Consensus 158 Y~p~~vtt~-~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~as 235 (504)
T PF03935_consen 158 YDPDAVTTE-NG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAS 235 (504)
T ss_pred ecCCCcEee-CC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccc
Confidence 456777665 46 7999997542 2 34 566 788899999999999853 46899999999964
Q ss_pred --C--------------C---------------------------------CCCeee-eecCCCCC-CCCe---EEEee-
Q 040673 96 --G--------------S---------------------------------QHDEID-FEFLGNVS-GQPY---IIHTN- 120 (291)
Q Consensus 96 --~--------------~---------------------------------~~~EID-~E~lG~~~-g~p~---~~~tn- 120 (291)
+ + ...||| ||...... +.+. .+|..
T Consensus 236 t~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP 315 (504)
T PF03935_consen 236 TDGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAP 315 (504)
T ss_pred cCceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecc
Confidence 0 1 123999 89764321 1011 12211
Q ss_pred -------------eeeCCC-------CCc-eeeE----ecC---C--CCCCCcEEEEEEEcCC-----eEEEEEcCeeEE
Q 040673 121 -------------IYTQGK-------GDR-EQQF----YLW---F--DPTADYHNYTIHWNPT-----EVVWYVDSVPIR 165 (291)
Q Consensus 121 -------------v~~~g~-------g~~-e~~~----~l~---f--d~~~dfHtY~i~Wtp~-----~I~fyVDG~~vr 165 (291)
+|.... |+. .+.+ .+. + ....+||+|++||.|. .|+|+|||+++.
T Consensus 316 ~d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~tw 395 (504)
T PF03935_consen 316 FDIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTW 395 (504)
T ss_pred cccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEE
Confidence 111000 000 1111 111 1 1237899999999763 899999999999
Q ss_pred EEeccccC------CccCCCCCcceEEEEeeeCCCCCCCCCccccCCCC--CCEEEEEeEEEEeeeecCCCCCcCcCCCC
Q 040673 166 VFRNYEKE------GIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSN--APFIARLRRFRARACKWNGPVSISRCATK 237 (291)
Q Consensus 166 ~~~~~~~~------g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~~c~~~~~~~~~~c~~~ 237 (291)
++...... .-.+|. .||+|++|+....+|+ . +||.+ .|..|.+++|||+.-.-.. .-.|.++
T Consensus 396 ti~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~L~FP~~M~IDYVRVYQ~~~~~---~vgCDP~ 465 (504)
T PF03935_consen 396 TINAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNHLCFPATMRIDYVRVYQPEDAI---NVGCDPP 465 (504)
T ss_pred EEEhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--cccccccccceEEEeEEEEeccCCCC---eeeeCCC
Confidence 99865421 235887 9999999999999995 2 57754 7999999999997653222 2457643
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.42 E-value=1.9e-12 Score=120.57 Aligned_cols=153 Identities=20% Similarity=0.338 Sum_probs=97.0
Q ss_pred CCeEEecCCcEEEEEEecCCC---------CeeEEceeeEeEEEEEEE-EecCCCCCceEEEEEEecCC-CCCCeee-ee
Q 040673 38 HHSAIVGNGEDLNLVLDQSSG---------SGAQSKISFLFGSIEMLI-KLVPGNSAGTVTAYYLTSSG-SQHDEID-FE 105 (291)
Q Consensus 38 ~nv~~~~~G~~l~L~ld~~sG---------sgi~Sk~~~~YG~~e~ri-Klp~g~s~G~v~AFwl~~~~-~~~~EID-~E 105 (291)
+.+.+. +| .|.|.+|+.+. +.|.||..|.+|+||+|+ |||.+ .|+||||||++.+ |..+||| ||
T Consensus 42 gL~~v~-~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE 117 (293)
T cd02181 42 GLAYVN-SG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIE 117 (293)
T ss_pred CCeEee-CC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEe
Confidence 345554 35 68888876431 348999999999999997 99987 8999999999874 8899999 89
Q ss_pred cCCCCCCCCeEEEee----eeeCC--CC-------------C-----ce---eeEecCCCCCCCcEEEEEEEcCCeEEEE
Q 040673 106 FLGNVSGQPYIIHTN----IYTQG--KG-------------D-----RE---QQFYLWFDPTADYHNYTIHWNPTEVVWY 158 (291)
Q Consensus 106 ~lG~~~g~p~~~~tn----v~~~g--~g-------------~-----~e---~~~~l~fd~~~dfHtY~i~Wtp~~I~fy 158 (291)
.++.......++||. +-..+ .+ + .+ ..+-..|+ ..+=-.|+++|+++.|+.+
T Consensus 118 ~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vW 196 (293)
T cd02181 118 GVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVW 196 (293)
T ss_pred ccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEE
Confidence 998643222244442 10010 00 0 00 01111222 2344799999999988766
Q ss_pred Ec---CeeEEEEeccc-c---CC---ccCCCC--------CcceEEEEeeeCCCCC
Q 040673 159 VD---SVPIRVFRNYE-K---EG---IAYPNK--------QGMRTHVSIWNADNWA 196 (291)
Q Consensus 159 VD---G~~vr~~~~~~-~---~g---~~~P~~--------~Pm~l~lnlW~gg~Wa 196 (291)
.- .+|-- ++... . -| ..||.. ++++|++|+=.=|+||
T Consensus 197 ff~R~~iP~d-i~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 197 FFPRGSIPAD-ITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EecCCCCCcc-cccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 53 22211 11111 0 11 235531 7999999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=91.19 E-value=5.7 Score=31.53 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=40.1
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEE
Q 040673 139 PTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRF 218 (291)
Q Consensus 139 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 218 (291)
+...||..++.|..+.+.+||||+++.+...... .+......+.+ |... ....+|...++.+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~----~~~~~~~~~~i----G~~~----------~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN----ISLNSNGPLFI----GGSG----------GGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS----SSTTSCCEEEE----SS-S----------TT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC----cCCCCcceEEE----eecC----------CCCCceEEEEEEE
Confidence 3588999999999999999999998765432211 11111122222 2221 2367899999999
Q ss_pred EEeeee
Q 040673 219 RARACK 224 (291)
Q Consensus 219 ~v~~c~ 224 (291)
+|....
T Consensus 145 ~i~~~a 150 (157)
T PF13385_consen 145 RIYNRA 150 (157)
T ss_dssp EEESS-
T ss_pred EEECcc
Confidence 997654
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=88.68 E-value=12 Score=30.50 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=45.0
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEe
Q 040673 139 PTADYHNYTIHWNP--TEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLR 216 (291)
Q Consensus 139 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (291)
+...||-..+-++. .+|++||||+++.+.... ..+...|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 799999999988654321 1122233333211111 11 12358899999
Q ss_pred EEEEeeeecC
Q 040673 217 RFRARACKWN 226 (291)
Q Consensus 217 ~~~v~~c~~~ 226 (291)
.++|..+..+
T Consensus 122 evriy~~aLs 131 (133)
T smart00560 122 EVRVYNRALT 131 (133)
T ss_pred EEEEeccccC
Confidence 9999887643
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=88.17 E-value=6.1 Score=33.41 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCeeEEceeeEeEEEEEEEEecCCCCCceEEEEEEecC--C-----CCCCeeeeecCCCCCCCCeEEEeeeeeCCCCCce
Q 040673 58 GSGAQSKISFLFGSIEMLIKLVPGNSAGTVTAYYLTSS--G-----SQHDEIDFEFLGNVSGQPYIIHTNIYTQGKGDRE 130 (291)
Q Consensus 58 Gsgi~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~--~-----~~~~EID~E~lG~~~g~p~~~~tnv~~~g~g~~e 130 (291)
++-|.++..|.=..+++++|+.++ | -.++++-.. . ...-|+.+.--+... ......+...
T Consensus 43 ~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~---------~~~~~~G~~~ 109 (185)
T PF06439_consen 43 GGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGT---------GLPNSTGSLY 109 (185)
T ss_dssp S--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCS---------TTTTSTTSBT
T ss_pred cceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCcc---------CCCCccceEE
Confidence 345888888888899999998543 2 344444433 0 233454433221110 0000111000
Q ss_pred ------ee-EecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecc
Q 040673 131 ------QQ-FYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRVFRNY 170 (291)
Q Consensus 131 ------~~-~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 170 (291)
.. ......+..+||++.|.-..++|+.+|||++|.++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 110 DEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00 01112256799999999999999999999999988764
No 21
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=86.46 E-value=1.2 Score=39.34 Aligned_cols=105 Identities=22% Similarity=0.307 Sum_probs=52.8
Q ss_pred EEEEecCCCCeeEEcee---eEeE-EEEEEEEecCCCCCceEEEEEEecCCCCCCeeeeecCCCCCCCCeEEEeeeeeCC
Q 040673 50 NLVLDQSSGSGAQSKIS---FLFG-SIEMLIKLVPGNSAGTVTAYYLTSSGSQHDEIDFEFLGNVSGQPYIIHTNIYTQG 125 (291)
Q Consensus 50 ~L~ld~~sGsgi~Sk~~---~~YG-~~e~riKlp~g~s~G~v~AFwl~~~~~~~~EID~E~lG~~~g~p~~~~tnv~~~g 125 (291)
.+.+...+|+++.|++. -.+| +....+|+..| |..+-.+.-+. ..--++|-.-.+ |+ +-.++. |
T Consensus 10 ~~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~s--G~---LvA~L~--g 77 (198)
T PF09264_consen 10 SWQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNES--GS---LVAELE--G 77 (198)
T ss_dssp -EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-TT--S----EEEEET--T
T ss_pred eEEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcCC--CC---EEEEEe--c
Confidence 34444467888877543 3466 67888888765 45554443322 111111111111 10 111111 1
Q ss_pred CCCceeeEecCCCCCCCcEEEEEEEcC--CeEEEEEcCeeEEEE
Q 040673 126 KGDREQQFYLWFDPTADYHNYTIHWNP--TEVVWYVDSVPIRVF 167 (291)
Q Consensus 126 ~g~~e~~~~l~fd~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~ 167 (291)
.+.+ ..+.+....-.+||.|.|...| ..-.|||||++|++.
T Consensus 78 ~ss~-~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 78 QSSN-TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp S-S--EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred CCCc-EEEecccccccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 1111 1122210112579999999977 889999999999974
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=85.83 E-value=14 Score=32.01 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=48.7
Q ss_pred EEEEEEecCCCCCceEEEEEEecCCCCCCeeeeecCCCCCCCCeEEEeeeeeCCCCCceeeEecC-C-CCCCCcEEEEEE
Q 040673 72 IEMLIKLVPGNSAGTVTAYYLTSSGSQHDEIDFEFLGNVSGQPYIIHTNIYTQGKGDREQQFYLW-F-DPTADYHNYTIH 149 (291)
Q Consensus 72 ~e~riKlp~g~s~G~v~AFwl~~~~~~~~EID~E~lG~~~g~p~~~~tnv~~~g~g~~e~~~~l~-f-d~~~dfHtY~i~ 149 (291)
+.+.+|..+. ..|+.-++.-. + ...++-++..|.. + .+. ++..+..+..+..... . -....||.-++.
T Consensus 56 i~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~~---~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal~ 125 (184)
T smart00210 56 LLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGRA---N-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLALS 125 (184)
T ss_pred EEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCCc---c-EEE--EEECCCCCcEEEEeecCCccccCCceEEEEE
Confidence 5666666542 35555555432 1 2334445554431 1 233 2222222222222111 1 135689999999
Q ss_pred EcCCeEEEEEcCeeEEEEe
Q 040673 150 WNPTEVVWYVDSVPIRVFR 168 (291)
Q Consensus 150 Wtp~~I~fyVDG~~vr~~~ 168 (291)
+..+.+++|||++++.+..
T Consensus 126 V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 126 VSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EeCCEEEEEECCcccccee
Confidence 9999999999999987754
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=80.76 E-value=6.7 Score=35.91 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=48.4
Q ss_pred EEEEEEEecCCC-----CCceEEEEEEecCC----------------CCCCeee-eecCCCCCCCCeEEEeeeee-CCCC
Q 040673 71 SIEMLIKLVPGN-----SAGTVTAYYLTSSG----------------SQHDEID-FEFLGNVSGQPYIIHTNIYT-QGKG 127 (291)
Q Consensus 71 ~~e~riKlp~g~-----s~G~v~AFwl~~~~----------------~~~~EID-~E~lG~~~g~p~~~~tnv~~-~g~g 127 (291)
-|-.+.++|... ...=.||+||++.. ..++|+| ||.|... +. .+.+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 367788888731 24568999999751 3689999 8999763 33 56666665 4431
Q ss_pred C-----ceeeEecCCCCCCCcEEEEEEEcCC
Q 040673 128 D-----REQQFYLWFDPTADYHNYTIHWNPT 153 (291)
Q Consensus 128 ~-----~e~~~~l~fd~~~dfHtY~i~Wtp~ 153 (291)
+ ....+-. -|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~--RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK--RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc--CCCCCCeEEEEEEcCC
Confidence 1 1111111 2667788888888643
No 24
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=74.53 E-value=42 Score=26.81 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEE
Q 040673 140 TADYHNYTIHWNPTEVVWYVDSVPIRV 166 (291)
Q Consensus 140 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 166 (291)
...||.-.|.+....+..+|||.+..+
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEe
Confidence 467999999999999999999985433
No 25
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=72.78 E-value=32 Score=30.35 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=44.7
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEe
Q 040673 139 PTADYHNYTIHWN--PTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLR 216 (291)
Q Consensus 139 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (291)
....||...+.|+ ..++.+||||+++.. ..-..+..++ .+-.|+++- .-+.+ ||. .+ ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq-~qd~~---gg~--f~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQ-EQDSY---GGG--FD-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEe-cccCC---CCC--CC-CCcceeEEEe
Confidence 3578999999997 457999999998621 1111122232 223344433 11222 343 23 2456888999
Q ss_pred EEEEeeeecC
Q 040673 217 RFRARACKWN 226 (291)
Q Consensus 217 ~~~v~~c~~~ 226 (291)
.|+|..-.-+
T Consensus 157 ~v~iw~~~Ls 166 (206)
T smart00159 157 DLNMWDSVLS 166 (206)
T ss_pred eeEEecccCC
Confidence 9988765443
No 26
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=71.32 E-value=51 Score=28.96 Aligned_cols=55 Identities=16% Similarity=0.385 Sum_probs=37.6
Q ss_pred ecCCCCCCCcEEEEEE--EcC---CeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeC
Q 040673 134 YLWFDPTADYHNYTIH--WNP---TEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNA 192 (291)
Q Consensus 134 ~l~fd~~~dfHtY~i~--Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~g 192 (291)
.+...+...||.+.|. |.+ ..|..++||+++..++... -++.....++-+.|.-.
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEH
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECC
Confidence 3333345889999876 765 6799999999998887632 23323677888888754
No 27
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=63.74 E-value=25 Score=31.79 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=37.1
Q ss_pred CcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCC-CCEEEEEeEEEE
Q 040673 142 DYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSN-APFIARLRRFRA 220 (291)
Q Consensus 142 dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 220 (291)
.++.-.|.=....|.|.|||.+|...+..... ..|. -.+|++ -..+ +|.+|.|+++.|
T Consensus 160 ~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gPv-----------------l~~G~I--GfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 160 GPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGPV-----------------LRGGRI--GFRQMAPLVARYRNLEV 218 (218)
T ss_dssp S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS--------------------SBEE--EEEEETT-EEEEEEEEE
T ss_pred CCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCCc-----------------ccCcEe--eeeccchhhhhhccccC
Confidence 55555777789999999999999998754321 1232 014553 3334 899999999986
No 28
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=58.86 E-value=80 Score=24.16 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEeEE
Q 040673 139 PTADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLRRF 218 (291)
Q Consensus 139 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 218 (291)
....||.-.|.-....+...||+............ . .-+...-.++.||............ ...|.-.++++
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~-~-----~~~~~~~~l~iGg~~~~~~~~~~~~--~~~f~Gci~~l 123 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS-S-----DSLDPDGSLYIGGLPESNQPSGSVD--TPGFVGCIRDL 123 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT-H-----HCBESEEEEEESSTTTTCTCTTSST--TSB-EEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccc-e-----ecccCCCCEEEecccCccccccccC--CCCcEEEcCeE
Confidence 35679999999999999999999988776543211 0 0223344577787655322111111 66788888888
Q ss_pred EEee
Q 040673 219 RARA 222 (291)
Q Consensus 219 ~v~~ 222 (291)
+|++
T Consensus 124 ~vng 127 (128)
T PF02210_consen 124 RVNG 127 (128)
T ss_dssp EETT
T ss_pred EECC
Confidence 8753
No 29
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=55.86 E-value=80 Score=27.56 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCCCCCCccccCCCCCCEEEEEe
Q 040673 139 PTADYHNYTIHWN--PTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWATRGGLDKIDWSNAPFIARLR 216 (291)
Q Consensus 139 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (291)
....||...+.|+ ..++.+||||+++..-. -..+..++. ...|.+.- .-..-||. .+ ..-.|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~--~g~l~lG~----~q~~~gg~--~~-~~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP--GGSIILGQ----EQDSYGGG--FD-ATQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC--CCeEEEee----cccCCCCC--CC-CCcceEEEEc
Confidence 4678999999997 45799999999875432 111222332 22333321 11112343 23 2357888899
Q ss_pred EEEEeeeecC
Q 040673 217 RFRARACKWN 226 (291)
Q Consensus 217 ~~~v~~c~~~ 226 (291)
.|+|..-.-+
T Consensus 157 ~v~iw~~~Ls 166 (201)
T cd00152 157 DVNMWDSVLS 166 (201)
T ss_pred eeEEEcccCC
Confidence 9888665433
No 30
>smart00282 LamG Laminin G domain.
Probab=55.48 E-value=55 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEE
Q 040673 140 TADYHNYTIHWNPTEVVWYVDSVPIRV 166 (291)
Q Consensus 140 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 166 (291)
...||.-.|.-....+..+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 467999999999999999999975443
No 31
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=50.25 E-value=1.8e+02 Score=25.75 Aligned_cols=135 Identities=11% Similarity=0.177 Sum_probs=68.0
Q ss_pred eeeEeEEEEEEEEecCCCCCceEEEEEEecCCC----------CCCeeeeecCCCCCCCCeEEEeeeeeCCCCCceeeEe
Q 040673 65 ISFLFGSIEMLIKLVPGNSAGTVTAYYLTSSGS----------QHDEIDFEFLGNVSGQPYIIHTNIYTQGKGDREQQFY 134 (291)
Q Consensus 65 ~~~~YG~~e~riKlp~g~s~G~v~AFwl~~~~~----------~~~EID~E~lG~~~g~p~~~~tnv~~~g~g~~e~~~~ 134 (291)
....-|.+-+|.|.... . .+-|++-.++.. ..+++=+|+.+...+..+...+.+-..+.
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------- 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------- 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------
Confidence 34556778888886432 3 455666666520 11266677776654333332222111000
Q ss_pred cCCCCCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCccCCCCC--cceEEEEeeeCCCCCCCCCccccCCCCCC
Q 040673 135 LWFDPTADYHNYTIHWN--PTEVVWYVDSVPIRVFRNYEKEGIAYPNKQ--GMRTHVSIWNADNWATRGGLDKIDWSNAP 210 (291)
Q Consensus 135 l~fd~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~--Pm~l~lnlW~gg~Wat~GG~~~~d~~~~P 210 (291)
-+ ....||+=++.=+ ..+.++|+||+.+.++.... ..|-.+- +=.+.+ |+- .++|. ...|
T Consensus 99 ~~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G~t--~R~g~-----~~y~ 162 (190)
T PF02973_consen 99 YK--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----GGT--NRAGS-----NAYP 162 (190)
T ss_dssp ET--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----SSE--EETTE-----EES-
T ss_pred cc--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----cce--EeCCC-----ceec
Confidence 01 2346888888876 66899999999888775442 1222211 112222 221 12232 3579
Q ss_pred EEEEEeEEEEeeeecC
Q 040673 211 FIARLRRFRARACKWN 226 (291)
Q Consensus 211 f~a~~~~~~v~~c~~~ 226 (291)
|.-.+++++|+.++.+
T Consensus 163 f~G~I~~l~iYn~aLs 178 (190)
T PF02973_consen 163 FNGTIDNLKIYNRALS 178 (190)
T ss_dssp -EEEEEEEEEESS---
T ss_pred ccceEEEEEEEcCcCC
Confidence 9999999999887644
No 32
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=40.46 E-value=34 Score=35.96 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEeeeCCCCC
Q 040673 140 TADYHNYTIHWNPTEVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSIWNADNWA 196 (291)
Q Consensus 140 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wa 196 (291)
.++||.|.+.-+=-.++.||||+...-..-. .+||- +|.++-..|=+|-=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCcc-CcccccceeEEeeecc
Confidence 5789999999976669999999865332211 35887 8888877787787887
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=26.89 E-value=1.4e+02 Score=22.03 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=29.5
Q ss_pred eeCCCeEEecCCcEEEEEEecCCCCeeEEceeeEeEEEEEEEEecCC
Q 040673 35 WGAHHSAIVGNGEDLNLVLDQSSGSGAQSKISFLFGSIEMLIKLVPG 81 (291)
Q Consensus 35 w~~~nv~~~~~G~~l~L~ld~~sGsgi~Sk~~~~YG~~e~riKlp~g 81 (291)
+.++++.+.-+++.|.++..+..... ...+.+|+|+=++.||..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 55666766655567887775543221 345678999999999964
No 34
>PRK02710 plastocyanin; Provisional
Probab=26.39 E-value=1.8e+02 Score=23.21 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=11.0
Q ss_pred eeeCCCeEEecCCcEEEEE
Q 040673 34 NWGAHHSAIVGNGEDLNLV 52 (291)
Q Consensus 34 ~w~~~nv~~~~~G~~l~L~ 52 (291)
.+.|..+.+.. |+.++++
T Consensus 43 ~F~P~~i~v~~-Gd~V~~~ 60 (119)
T PRK02710 43 AFEPSTLTIKA-GDTVKWV 60 (119)
T ss_pred EEeCCEEEEcC-CCEEEEE
Confidence 46667777765 4456665
No 35
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=25.87 E-value=1.3e+02 Score=25.95 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=27.5
Q ss_pred eeeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEE
Q 040673 130 EQQFYLWFDPTADYHNYTIHWNPTEVVWYVDSVPIRV 166 (291)
Q Consensus 130 e~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 166 (291)
..++++|. .+.|=|.|+|.-..+.+..+++|..+++
T Consensus 92 ~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 92 TKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred hhheeEEE-EecCCceEEEEEeccceeeEEcCccccc
Confidence 34556653 2344499999999999999999998876
No 36
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=24.41 E-value=6.7e+02 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred cEEEEEEEcCCe-EEEEEcCeeEEE
Q 040673 143 YHNYTIHWNPTE-VVWYVDSVPIRV 166 (291)
Q Consensus 143 fHtY~i~Wtp~~-I~fyVDG~~vr~ 166 (291)
-|.|++.-.|+. -...|||+.+.+
T Consensus 170 tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 170 THLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred ceeEEEEecCCCeeEEEEccccccc
Confidence 599999999984 788999998755
No 37
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=22.42 E-value=1.1e+02 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.393 Sum_probs=20.2
Q ss_pred eEEEEEcCeeEEEEeccccCCccCCCCCcceEEEEe
Q 040673 154 EVVWYVDSVPIRVFRNYEKEGIAYPNKQGMRTHVSI 189 (291)
Q Consensus 154 ~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnl 189 (291)
.+.|||||+++.+-..... ..++-..|..-.+.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~--~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQ--LFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCCe--EEeCCCCCeeEEEEE
Confidence 7889999999855443321 223323555555555
No 38
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=21.61 E-value=1.5e+02 Score=22.74 Aligned_cols=47 Identities=9% Similarity=0.171 Sum_probs=28.1
Q ss_pred eeCCCeEEecCCcEEEEEEecCCCCeeEEceeeEeEEEEEEEEecCC
Q 040673 35 WGAHHSAIVGNGEDLNLVLDQSSGSGAQSKISFLFGSIEMLIKLVPG 81 (291)
Q Consensus 35 w~~~nv~~~~~G~~l~L~ld~~sGsgi~Sk~~~~YG~~e~riKlp~g 81 (291)
..++.|.+.-.+..|.|+-.+..-.+-.....+.||.|+=++.||.+
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 44555655444446777775432111011235799999999999964
No 39
>PF15240 Pro-rich: Proline-rich
Probab=21.28 E-value=43 Score=29.48 Aligned_cols=8 Identities=0% Similarity=0.032 Sum_probs=3.3
Q ss_pred cccccccc
Q 040673 24 IAKFSKSM 31 (291)
Q Consensus 24 ~~~f~~~f 31 (291)
|.+-++++
T Consensus 16 AQ~~dEdv 23 (179)
T PF15240_consen 16 AQSTDEDV 23 (179)
T ss_pred cccccccc
Confidence 33334443
No 40
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=20.67 E-value=1.4e+02 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=23.2
Q ss_pred ccccccceeeeeCCCeEEecCCc--EEEEEEecCCCC
Q 040673 25 AKFSKSMYINWGAHHSAIVGNGE--DLNLVLDQSSGS 59 (291)
Q Consensus 25 ~~f~~~f~~~w~~~nv~~~~~G~--~l~L~ld~~sGs 59 (291)
....+||.+.-+|+++-...++. .+.|.++ +.|+
T Consensus 46 ~~i~~dFaIIndPg~i~~~~~~g~~t~t~yiK-NtG~ 81 (154)
T COG3354 46 DMIQTDFAIINDPGQIPYVGTDGPYTYTFYIK-NTGS 81 (154)
T ss_pred HHhhccEEEecCCCCCccccCCCceEEEEEEe-cCCC
Confidence 36778899999999988776533 3555544 5554
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=20.40 E-value=1.2e+02 Score=23.38 Aligned_cols=23 Identities=9% Similarity=0.333 Sum_probs=16.0
Q ss_pred eeeCCCeEEecCCcEEEEEEecCC
Q 040673 34 NWGAHHSAIVGNGEDLNLVLDQSS 57 (291)
Q Consensus 34 ~w~~~nv~~~~~G~~l~L~ld~~s 57 (291)
.+.|+.+++-. |+.++|++.+.+
T Consensus 31 ~f~P~~i~v~~-G~~v~l~~~N~~ 53 (104)
T PF13473_consen 31 GFSPSTITVKA-GQPVTLTFTNND 53 (104)
T ss_dssp EEES-EEEEET-TCEEEEEEEE-S
T ss_pred eEecCEEEEcC-CCeEEEEEEECC
Confidence 58899999976 667888886543
No 42
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=20.18 E-value=1.6e+02 Score=22.25 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=30.1
Q ss_pred eeCCCeEEecCCcEEEEEEecCCCCe---eEEceeeEeEEEEEEEEecCC
Q 040673 35 WGAHHSAIVGNGEDLNLVLDQSSGSG---AQSKISFLFGSIEMLIKLVPG 81 (291)
Q Consensus 35 w~~~nv~~~~~G~~l~L~ld~~sGsg---i~Sk~~~~YG~~e~riKlp~g 81 (291)
..++++.+.-+|..|.++-.+..... =.....+.+|.|+-++.||.+
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCC
Confidence 45666776655667777765433221 111346779999999999964
Done!