Query 040679
Match_columns 199
No_of_seqs 115 out of 873
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 2.7E-34 9.2E-39 220.3 15.1 149 28-189 2-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 5.2E-34 1.8E-38 219.0 14.3 149 27-190 3-152 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 3.2E-33 1.1E-37 214.1 13.7 146 27-188 2-149 (150)
4 1co7_I BPTI, bovine pancreatic 41.6 4.6 0.00016 27.7 -0.4 46 1-47 2-50 (99)
5 3cjh_B Mitochondrial import in 36.5 74 0.0025 19.5 5.0 32 92-123 32-63 (64)
6 2bsk_B Mitochondrial import in 29.5 1.2E+02 0.0041 20.0 5.3 34 92-125 41-74 (90)
7 2bsk_A Mitochondrial import in 29.2 1.2E+02 0.0042 20.0 5.3 34 92-125 39-72 (89)
8 2l7n_A Talin-1; integrin, bund 28.5 1.9E+02 0.0063 21.7 7.7 87 62-153 77-164 (168)
9 3dxr_B Mitochondrial import in 28.2 1.2E+02 0.004 20.5 5.0 33 92-124 54-86 (95)
10 3dxr_A Mitochondrial import in 27.5 1.3E+02 0.0045 19.8 5.1 33 92-124 48-80 (89)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=2.7e-34 Score=220.30 Aligned_cols=149 Identities=18% Similarity=0.359 Sum_probs=136.8
Q ss_pred cchHHhccCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHH
Q 040679 28 PHDLVRSSCAHASYPAVCLRTLSSYKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSNVNKGKSTNKRERLALSDCV 106 (199)
Q Consensus 28 ~~~~v~~~C~~T~~p~~C~~~L~~~p~s~~-~~~~l~~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC~ 106 (199)
+.+.|+.+|+.|+||++|+++|.++|++.. |+.+|+++++++++.+++.+..++..+.+. ..++.++.+++||.
T Consensus 2 ~~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-----~~~~~~~~al~dC~ 76 (153)
T 1xg2_B 2 ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-----ATDPKLKGRYETCS 76 (153)
T ss_dssp CCHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHH
T ss_pred hHhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHH
Confidence 357899999999999999999999998766 999999999999999999999999998764 35799999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 040679 107 EQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKISNVARVTSNALYMLT 186 (199)
Q Consensus 107 el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~dgf~~~~~~~~~~v~~~~~~~~~L~snaLaiv~ 186 (199)
|+|++++++|++++.+|+.+ .++|+++|||+|++|++||+|||.+.+ .++++|...+.++.+|++|+|+|++
T Consensus 77 e~y~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~ 148 (153)
T 1xg2_B 77 ENYADAIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP-NIPTQLHQADLKLEDLCDIVLVISN 148 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753 479999999999999999999998764 4678999999999999999999999
Q ss_pred ccc
Q 040679 187 RLD 189 (199)
Q Consensus 187 ~~~ 189 (199)
.+.
T Consensus 149 ~l~ 151 (153)
T 1xg2_B 149 LLP 151 (153)
T ss_dssp HCC
T ss_pred Hhc
Confidence 874
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=5.2e-34 Score=219.03 Aligned_cols=149 Identities=22% Similarity=0.364 Sum_probs=134.2
Q ss_pred CcchHHhccCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHH
Q 040679 27 EPHDLVRSSCAHASYPAVCLRTLSSYKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSNVNKGKSTNKRERLALSDC 105 (199)
Q Consensus 27 ~~~~~v~~~C~~T~~p~~C~~~L~~~p~s~~-~~~~l~~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC 105 (199)
++.+.|+.+|+.|+||++|+++| +|.+.. |+.+|+++++++++.+++.+..++..+.+. ..++.++.+++||
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~-----~~~~~~~~al~dC 75 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDG-----GVDPRSKLAYRSC 75 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHH
Confidence 45678999999999999999999 666666 999999999999999999999999999865 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 040679 106 VEQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKISNVARVTSNALYML 185 (199)
Q Consensus 106 ~el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~dgf~~~~~~~~~~v~~~~~~~~~L~snaLaiv 185 (199)
.|+|++++++|++++.+|+.. .++|+++|||+|+||++||+|||.+.+ .++++|...+.++.+|++|+|+|+
T Consensus 76 ~e~y~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~ 147 (153)
T 1x91_A 76 VDEYESAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLR-SVDSSVVNNSKTIKNLCGIALVIS 147 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccHhHHHHHhccCC-CCcCHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999753 489999999999999999999998864 467899999999999999999999
Q ss_pred hcccC
Q 040679 186 TRLDK 190 (199)
Q Consensus 186 ~~~~~ 190 (199)
+.+..
T Consensus 148 ~~l~~ 152 (153)
T 1x91_A 148 NMLPR 152 (153)
T ss_dssp HHSCC
T ss_pred HHccC
Confidence 98753
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=3.2e-33 Score=214.09 Aligned_cols=146 Identities=19% Similarity=0.245 Sum_probs=131.7
Q ss_pred CcchHHhccCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHH
Q 040679 27 EPHDLVRSSCAHASYPAVCLRTLSSYKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSNVNKGKSTNKRERLALSDC 105 (199)
Q Consensus 27 ~~~~~v~~~C~~T~~p~~C~~~L~~~p~s~~-~~~~l~~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC 105 (199)
++.+.|+.+|+.|+||++|+++|.++|++.. |+.+|+++++++++.+++.+..++..+... ..++..+.+++||
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~-----~~~~~~~~al~dC 76 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS-----NPPAAWKGPLKNC 76 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCGGGHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHH
Confidence 4678999999999999999999999998877 999999999999999999999999998764 3468889999999
Q ss_pred HHHHHHHH-HHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHH
Q 040679 106 VEQISDSV-EDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKISNVARVTSNALYM 184 (199)
Q Consensus 106 ~el~~~a~-~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~dgf~~~~~~~~~~v~~~~~~~~~L~snaLai 184 (199)
.|+|++++ ++|++++.+++.+ .++++++|||+|++|++||+|||.+. ++||...+.++.+|++|+|+|
T Consensus 77 ~e~y~~a~~~~L~~a~~~l~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~----~~pl~~~~~~~~~l~s~aLai 145 (150)
T 2cj4_A 77 AFSYKVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS----KSPFSALNIAVHELSDVGRAI 145 (150)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS----CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHHHH
Confidence 99999999 7999999999753 47899999999999999999999742 367888999999999999999
Q ss_pred Hhcc
Q 040679 185 LTRL 188 (199)
Q Consensus 185 v~~~ 188 (199)
++.+
T Consensus 146 i~~l 149 (150)
T 2cj4_A 146 VRNL 149 (150)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9875
No 4
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=41.59 E-value=4.6 Score=27.73 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=4.5
Q ss_pred CchhHHHHHHHHHHHhhhccCCCCCCC---cchHHhccCCCCCChhhHHH
Q 040679 1 MLRLCSLITLFLLLSCSAAGSKHGHGE---PHDLVRSSCAHASYPAVCLR 47 (199)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~v~~~C~~T~~p~~C~~ 47 (199)
|.|+.-+++|+|+|.+..+ .+++... .......+|..-..+..|..
T Consensus 2 m~~~~ls~~lllll~~l~~-~~~~~~~~~~~~~~~~~~C~~p~~~G~C~~ 50 (99)
T 1co7_I 2 MSRLCLSVALLVLLGTLAA-STPGCDTSNQAKAQRPDFCLEPPYTGPCKA 50 (99)
T ss_dssp ------------------------------------------CCCCSBCC
T ss_pred cchHHHHHHHHHHHHHHHH-hcccccccccccCCCCccCCCCCcCCCCCC
Confidence 6676555555554333221 1112111 12345667776665555654
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=36.48 E-value=74 Score=19.55 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040679 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNEL 123 (199)
Q Consensus 92 ~~~~~~~~~al~dC~el~~~a~~~L~~a~~~l 123 (199)
+..+..+..++..|.+-|-++-..+.+.+.++
T Consensus 32 ~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 32 SNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999999999988887766543
No 6
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=29.51 E-value=1.2e+02 Score=20.01 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040679 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 92 ~~~~~~~~~al~dC~el~~~a~~~L~~a~~~l~~ 125 (199)
+..+..+..++..|.+-|-++-..+...+.++..
T Consensus 41 ~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 41 AELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999988888877653
No 7
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=29.20 E-value=1.2e+02 Score=19.97 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040679 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 92 ~~~~~~~~~al~dC~el~~~a~~~L~~a~~~l~~ 125 (199)
+..+..+..++..|.+-|-++-..+...+.++..
T Consensus 39 ~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 39 REVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999988887753
No 8
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=28.49 E-value=1.9e+02 Score=21.67 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccchhhHH
Q 040679 62 LAQAAVNVSLSRASKVSAYLSQVSSNVNKGKSTNKR-ERLALSDCVEQISDSVEDLSKTLNELKHLKGDTFSWQMSNAET 140 (199)
Q Consensus 62 l~~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~-~~~al~dC~el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~t 140 (199)
+.-++-+.+...++.....++.+... ..++. ++.-++.+.++.+++..-++++...+.+..-.........+-.
T Consensus 77 y~g~aar~~A~aL~~lt~avrgvaat-----t~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak 151 (168)
T 2l7n_A 77 YAGIAARDVAGGLRSLAQAARGVAAL-----TSDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAK 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44444344444444444455555543 23343 3456666668888888888888777754210000112333445
Q ss_pred HHHHhhcccchHh
Q 040679 141 WVSSALTDEDTCL 153 (199)
Q Consensus 141 wLSAAlt~~~TC~ 153 (199)
-+|.++.....|+
T Consensus 152 ~vs~aL~~~v~cL 164 (168)
T 2l7n_A 152 AVTQALNRCVSCL 164 (168)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcC
Confidence 5677765444444
No 9
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=28.21 E-value=1.2e+02 Score=20.47 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040679 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELK 124 (199)
Q Consensus 92 ~~~~~~~~~al~dC~el~~~a~~~L~~a~~~l~ 124 (199)
+..+..+..++..|.+-|-++-..+.+.+.++.
T Consensus 54 ~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~ 86 (95)
T 3dxr_B 54 GELNKNESSCLDRCVAKYFETNVQVGENMQKMG 86 (95)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999988887764
No 10
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=27.49 E-value=1.3e+02 Score=19.82 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040679 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELK 124 (199)
Q Consensus 92 ~~~~~~~~~al~dC~el~~~a~~~L~~a~~~l~ 124 (199)
+..+..+..++..|.+-|-++-..+...+.++.
T Consensus 48 ~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 80 (89)
T 3dxr_A 48 SKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN 80 (89)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999998888764
Done!