Query 040679
Match_columns 199
No_of_seqs 115 out of 873
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 17:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040679.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040679hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cj4a1 a.29.6.1 (A:4-150) Inv 100.0 4E-32 2.9E-36 205.6 14.2 143 30-188 2-146 (147)
2 d1x91a_ a.29.6.1 (A:) Pectin m 100.0 1.8E-31 1.3E-35 202.1 15.0 147 30-190 2-148 (149)
3 d2bskb1 g.83.1.1 (B:13-77) Mit 33.1 42 0.003 19.5 5.3 33 92-124 29-61 (65)
4 d2c2aa1 a.30.2.1 (A:232-320) S 24.0 68 0.0049 18.9 4.9 50 135-184 28-81 (89)
5 d1vh6a_ a.24.19.1 (A:) Flagell 23.8 71 0.0052 19.7 5.0 44 107-154 9-52 (102)
6 d2eiaa1 a.28.3.1 (A:148-222) E 22.0 73 0.0053 18.9 4.5 45 107-160 12-59 (75)
7 d1vp7a_ a.7.13.1 (A:) Exonucle 18.3 60 0.0044 18.9 3.4 48 108-160 7-54 (68)
8 d1a8oa_ a.28.3.1 (A:) HIV caps 16.5 82 0.006 18.3 3.8 45 107-160 9-56 (70)
9 d1orja_ a.24.19.1 (A:) Flagell 15.5 1.4E+02 0.01 19.1 5.2 22 105-126 21-42 (126)
10 d1qrjb1 a.28.3.1 (B:131-214) H 9.5 89 0.0065 19.0 2.3 45 107-160 12-59 (84)
No 1
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=99.98 E-value=4e-32 Score=205.57 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=131.5
Q ss_pred hHHhccCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHH
Q 040679 30 DLVRSSCAHASYPAVCLRTLSSYKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSNVNKGKSTNKRERLALSDCVEQ 108 (199)
Q Consensus 30 ~~v~~~C~~T~~p~~C~~~L~~~p~s~~-~~~~l~~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC~el 108 (199)
++|+.+|++|+||++|+++|.++|++.. |+++|+.++++.++.+++.+..++.++.+. ..++..+.++++|.|+
T Consensus 2 ~lI~~~C~~T~~~~~C~~sL~~~p~s~~ad~~~la~~av~~a~~~a~~~~~~i~~l~~~-----~~~~~~~~al~~C~e~ 76 (147)
T d2cj4a1 2 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS-----NPPAAWKGPLKNCAFS 76 (147)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCGGGHHHHHHHHHH
T ss_pred hHHHHhhcCCCCcHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence 6899999999999999999999998877 999999999999999999999999999763 5688899999999999
Q ss_pred HHHHHH-HHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 040679 109 ISDSVE-DLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKISNVARVTSNALYMLTR 187 (199)
Q Consensus 109 ~~~a~~-~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~dgf~~~~~~~~~~v~~~~~~~~~L~snaLaiv~~ 187 (199)
|+++++ .|+.+...+..+ +++++++|||+|+++++||+|||.+.+ +|+...++++.+|++|+|+|++.
T Consensus 77 y~~av~~~l~~a~~~l~~~-------~~~~~~~~lsaa~~~~~tC~d~f~~~~----spl~~~~~~~~~l~~ial~i~~~ 145 (147)
T d2cj4a1 77 YKVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGSK----SPFSALNIAVHELSDVGRAIVRN 145 (147)
T ss_dssp HHHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTSC----CTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhHHHHhhHHhCCCC----CcHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 699999998753 589999999999999999999998743 68888999999999999999987
Q ss_pred c
Q 040679 188 L 188 (199)
Q Consensus 188 ~ 188 (199)
+
T Consensus 146 L 146 (147)
T d2cj4a1 146 L 146 (147)
T ss_dssp T
T ss_pred h
Confidence 6
No 2
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.97 E-value=1.8e-31 Score=202.11 Aligned_cols=147 Identities=22% Similarity=0.377 Sum_probs=133.2
Q ss_pred hHHhccCCCCCChhhHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHH
Q 040679 30 DLVRSSCAHASYPAVCLRTLSSYKGAAETPRDLAQAAVNVSLSRASKVSAYLSQVSSNVNKGKSTNKRERLALSDCVEQI 109 (199)
Q Consensus 30 ~~v~~~C~~T~~p~~C~~~L~~~p~s~~~~~~l~~~ai~~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC~el~ 109 (199)
..|+.+|++|+||++|+++|.++|.+ .|+.+|+.++++.++.+++.+..++.++... ..++..+.++++|.++|
T Consensus 2 ~~i~~~C~~T~~~~~C~~~L~~~~~~-~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~-----~~~~~~~~al~~C~~~y 75 (149)
T d1x91a_ 2 SEMSTICDKTLNPSFCLKFLNTKFAS-ANLQALAKTTLDSTQARATQTLKKLQSIIDG-----GVDPRSKLAYRSCVDEY 75 (149)
T ss_dssp CSTTTGGGGSSCHHHHHHHHHHTTCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH
T ss_pred hHHHhhhCCCCCcHHHHHHHCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHH
Confidence 35789999999999999999876643 3999999999999999999999999999874 57899999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 040679 110 SDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKISNVARVTSNALYMLTRLD 189 (199)
Q Consensus 110 ~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~dgf~~~~~~~~~~v~~~~~~~~~L~snaLaiv~~~~ 189 (199)
++++++|++++.+|+.+ +++++++|||+|+++++||+|||.+.+ .+.++|...+..+.+|++|+|+|++.|.
T Consensus 76 ~~a~~~L~~a~~~l~~~-------~~~~~~~~lsaa~~~~~tC~d~f~~~~-~~~s~l~~~~~~~~~l~~ialai~~~L~ 147 (149)
T d1x91a_ 76 ESAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLR-SVDSSVVNNSKTIKNLCGIALVISNMLP 147 (149)
T ss_dssp HHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhHhHhHHHHhhcC-CCCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999754 478999999999999999999998865 4568999999999999999999999886
Q ss_pred C
Q 040679 190 K 190 (199)
Q Consensus 190 ~ 190 (199)
+
T Consensus 148 ~ 148 (149)
T d1x91a_ 148 R 148 (149)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.14 E-value=42 Score=19.45 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040679 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELK 124 (199)
Q Consensus 92 ~~~~~~~~~al~dC~el~~~a~~~L~~a~~~l~ 124 (199)
+..+..+..++..|.+-|-++-..+.+.+.++.
T Consensus 29 ~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~ 61 (65)
T d2bskb1 29 AELSKGESVCLDRCVSKYLDIHERMGKKLTELS 61 (65)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999988888777664
No 4
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=24.00 E-value=68 Score=18.88 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=36.7
Q ss_pred chhhHHHHHHhhcccchHhhccccCC-c---hhhhhHHHHHHHHHHHHHHHHHH
Q 040679 135 MSNAETWVSSALTDEDTCLDGFEDVD-S---KVKSDVKRKISNVARVTSNALYM 184 (199)
Q Consensus 135 ~~d~~twLSAAlt~~~TC~dgf~~~~-~---~~~~~v~~~~~~~~~L~snaLai 184 (199)
.+|++|-|++...+.+.-.+.+.+.. . +.-..+....+.+.+++.+-|.+
T Consensus 28 sHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~ 81 (89)
T d2c2aa1 28 SHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDF 81 (89)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988887776543 1 22345566667788888888776
No 5
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=23.81 E-value=71 Score=19.75 Aligned_cols=44 Identities=2% Similarity=-0.009 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhh
Q 040679 107 EQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLD 154 (199)
Q Consensus 107 el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~d 154 (199)
-+|+.++..|+.+..++..++ + ......-+...+.++.-..|+|
T Consensus 9 mLyd~~i~~l~~a~~ai~~~d---~-~~~~~~~~ka~~Ii~~L~~sLd 52 (102)
T d1vh6a_ 9 MLYNGCLKFIRLAAQAIENDD---M-ERKNENLIKAQNIIQELNFTLN 52 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---H-HHHHHHHHHHHHHHHHHHhccc
Confidence 578899999999988887542 1 1122333333445555566776
No 6
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=22.00 E-value=73 Score=18.86 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhccc---chHhhccccCC
Q 040679 107 EQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDE---DTCLDGFEDVD 160 (199)
Q Consensus 107 el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~---~TC~dgf~~~~ 160 (199)
|=|.+-+++|.++++... ...+++.|+---+.++ ..|...+...+
T Consensus 12 Epf~dfVdRl~~a~~~~~---------~~~~~k~~~~~~L~~qNANpdCk~iLr~l~ 59 (75)
T d2eiaa1 12 EPYPEFVDRLLSQIKSEG---------HPQEISKFLTDTLTIQNANEECRNAMRHLR 59 (75)
T ss_dssp CCHHHHHHHHHHHHHHTT---------CCHHHHHHHHHHHHHHTSCTTTTTTTTTCC
T ss_pred CCHHHHHHHHHHHHHhhc---------CcHhHHHHHHHHHhHhcCCHHHHHHHHhcC
Confidence 457788899999888764 3578999988877665 47888887654
No 7
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=18.35 E-value=60 Score=18.95 Aligned_cols=48 Identities=6% Similarity=0.178 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCC
Q 040679 108 QISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVD 160 (199)
Q Consensus 108 l~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~dgf~~~~ 160 (199)
-|+.++++|+..+..|.+++. ..++.-...--++.-...|.+.+.+..
T Consensus 7 sfEe~l~~LE~IV~~LE~g~l-----~Leesl~~ye~G~~L~~~C~~~L~~ae 54 (68)
T d1vp7a_ 7 DFETALAELESLVSAMENGTL-----PLEQSLSAYRRGVELARVCQDRLAQAE 54 (68)
T ss_dssp SHHHHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999976542 466666666777777788888876643
No 8
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=16.45 E-value=82 Score=18.27 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccc---hHhhccccCC
Q 040679 107 EQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDED---TCLDGFEDVD 160 (199)
Q Consensus 107 el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~---TC~dgf~~~~ 160 (199)
|-|.+-+++|..+++... ...+++.|+.--+.++. .|...|...+
T Consensus 9 Epf~dfV~Rl~~~~~~~~---------~~~~~k~~~~~~l~~~nANpdCk~ilr~l~ 56 (70)
T d1a8oa_ 9 EPFRDYVDRFYKTLRAEQ---------ASQEVKNWMTETLLVQNANPDCKTILKALG 56 (70)
T ss_dssp SCHHHHHHHHHHHHHTTT---------CCHHHHHHHHHTHHHHTSCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHhhCCHHHHHHHHccC
Confidence 447778888888877653 35678999888776664 4999887765
No 9
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=15.50 E-value=1.4e+02 Score=19.07 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 040679 105 CVEQISDSVEDLSKTLNELKHL 126 (199)
Q Consensus 105 C~el~~~a~~~L~~a~~~l~~~ 126 (199)
=.-+|+.++..|..+..++..+
T Consensus 21 i~mLyd~~i~~l~~a~~a~~~~ 42 (126)
T d1orja_ 21 IILLYDKAIECLERAIEIYDQV 42 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3457777777777777777543
No 10
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=9.54 E-value=89 Score=18.95 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhccc---chHhhccccCC
Q 040679 107 EQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDE---DTCLDGFEDVD 160 (199)
Q Consensus 107 el~~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~---~TC~dgf~~~~ 160 (199)
|-|.+-+++|.++++... ...+++.||---+.++ -.|...+...+
T Consensus 12 Epf~dfVdRl~~a~~~~~---------~~~~~k~~l~~~L~~qNANpdCk~~lr~l~ 59 (84)
T d1qrjb1 12 EPYHAFVERLNIALDNGL---------PEGTPKDPILRSLAYSNANKECQKLLQARG 59 (84)
T ss_dssp SCHHHHHHHHHHHHHTTC---------CTTSCCHHHHHHHHTTTBCHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHcccHHHHHHHHhcC
Confidence 448888999999988753 2467889988877666 47888886543
Done!