BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040680
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 25/135 (18%)
Query: 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVARGL-----------SKG 133
+ LL+LDDVW D W+ L+ I++ TR + V + S G
Sbjct: 237 RSLLILDDVW----DSWV-----LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287
Query: 134 QSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL--YCNKIEAYWLP 191
+ L IL F V + + L E I+++C G PL + +G LL + N+ E Y
Sbjct: 288 KEKGLEILSLF---VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQ 344
Query: 192 FRQEELSKIKQEGNH 206
+ ++ +I++ ++
Sbjct: 345 LQNKQFKRIRKSSSY 359
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVARGL-----------SKG 133
+ LL+LDDVW D W+ L+ I++ TR + V + S G
Sbjct: 243 RSLLILDDVW----DSWV-----LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 293
Query: 134 QSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL--YCNKIEAYWLP 191
+ L IL F V + + L E I+++C G PL + +G LL + N+ E Y
Sbjct: 294 KEKGLEILSLF---VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQ 350
Query: 192 FRQEELSKIKQEGNHILPILE 212
+ ++ +I++ ++ L+
Sbjct: 351 LQNKQFKRIRKSSSYDYEALD 371
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 360 LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC-----PELKGWLRRIDN 414
++PSL+ L L L L YI S A+ +L Y+++ C P L +R +
Sbjct: 127 FNRVPSLRRLDLGELKRLEYI---SEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEEL 183
Query: 415 DADGSKIDMIEPPSFPCLSEL 435
+ G+++D+I P SF L+ L
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSL 204
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 360 LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC-----PELKGWLRRIDN 414
++PSL+ L L L L YI S A+ +L Y+++ C P L +R +
Sbjct: 127 FNRVPSLRRLDLGELKRLEYI---SEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEEL 183
Query: 415 DADGSKIDMIEPPSFPCLSEL 435
+ G+++D+I P SF L+ L
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSL 204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 85 KYLLVLDDVW----IENCDEWLKLETLLRNSAGGSNIIVATRSERVARGLSKGQSWSLFI 140
+ LL+LDDVW ++ D ++ R+ + +++ V GL G+ L I
Sbjct: 237 RSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGL--GREKGLEI 294
Query: 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL--YCNKIEAYWLPFRQEELS 198
L F V + L I+++C G PL + +G LL + N+ Y + ++
Sbjct: 295 LSLF---VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFK 351
Query: 199 KIKQEGNHILPILE 212
+I++ ++ L+
Sbjct: 352 RIRKSSSYDYEALD 365
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 261 RTEW--IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRI 318
R EW I +P+SI+ L++L L + + ++ L ++ L LE D GC +L P I
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 319 LEG 321
G
Sbjct: 249 FGG 251
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 85 KYLLVLDDVWIENCDEWL------KLETLLRNSAGGSNIIVATRSERVARGLSKGQSWSL 138
+ LL+LDDVW D W+ + + LL S V V G+ L
Sbjct: 244 RSLLILDDVW----DPWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGL 299
Query: 139 FILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL--YCNKIEAYWLPFRQEE 196
IL F V + L I+++C G PL + +G LL + N+ Y + ++
Sbjct: 300 EILSLF---VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQ 356
Query: 197 LSKIKQEGNHILPILE 212
+I++ ++ L+
Sbjct: 357 FKRIRKSSSYDYEALD 372
>pdb|3H1O|A Chain A, The Structure Of Fluorescent Protein Fp480
pdb|3H1O|B Chain B, The Structure Of Fluorescent Protein Fp480
pdb|3H1R|A Chain A, Order-Disorder Structure Of Fluorescent Protein Fp480
Length = 231
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET------PDCNGCRSLAELPRILEGCGHTDVDVEALLD 334
+N P NG P K L E P G A+L L G GH + +
Sbjct: 122 VNFPSNG----PVMQKKTLGWEAHTEMLYPADGGLEGRADLALKLVGGGHLICNFKTTYR 177
Query: 335 DLKPHKNLRELSIFYFGVRCQYIPQLEQ 362
KP KNL+ ++Y R + I + ++
Sbjct: 178 SKKPAKNLKMPGVYYVDYRLERIKEADK 205
>pdb|3SVN|A Chain A, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|B Chain B, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|C Chain C, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|D Chain D, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
Length = 233
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET------PDCNGCRSLAELPRILEGCGHTDVDVEALLD 334
+N P NG P K L E P G A++ L G GH +++
Sbjct: 126 VNFPSNG----PVMQKKTLGWEASTEMLYPADGGLEGRADMALKLVGGGHLICNLKTTYR 181
Query: 335 DLKPHKNLRELSIFYFGVRCQYIPQLEQ 362
KP KNL+ ++Y R + I + ++
Sbjct: 182 SKKPAKNLKMPGVYYVDRRLERIKEADK 209
>pdb|3SVO|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVR|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVS|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|E Chain E, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|F Chain F, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|G Chain G, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|H Chain H, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
Length = 233
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET------PDCNGCRSLAELPRILEGCGHTDVDVEALLD 334
+N P NG P K L E P G A++ L G GH +++
Sbjct: 126 VNFPSNG----PVMQKKTLGWEACTEMLYPADGGLEGRADMALKLVGGGHLICNLKTTYR 181
Query: 335 DLKPHKNLRELSIFYFGVRCQYIPQLEQ 362
KP KNL+ ++Y R + I + ++
Sbjct: 182 SKKPAKNLKMPGVYYVDRRLERIKEADK 209
>pdb|3M22|A Chain A, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|B Chain B, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|C Chain C, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|D Chain D, Crystal Structure Of Tagrfp Fluorescent Protein
Length = 235
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET--PDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKP 338
+N P NG ++ N E P G +++ L G GH + + KP
Sbjct: 126 VNFPSNGPVMQKKTLGWEANTEMLYPADGGLEGRSDMALKLVGGGHLICNFKTTYRSKKP 185
Query: 339 HKNLRELSIFYFGVRCQYIPQLEQ 362
KNL+ ++Y R + I + ++
Sbjct: 186 AKNLKMPGVYYVDHRLERIKEADK 209
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 360 LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC-----PELKGWLRRIDN 414
++PSL+ L L L L YI S + S+L Y+++ C P L ++ +
Sbjct: 156 FNRIPSLRRLDLGELKRLSYI---SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
Query: 415 DADGSKIDMIEPPSFPCLSELD 436
D G+ + I P SF L L
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQ 234
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 268 VPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGC 322
+ ++I K L L L GN +T+LP + L NL D + R L LP L C
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 109 RNSAGGS-NIIVATRSERVARGLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCV 167
R +A GS N+I R ER R L + F+ A + G EP G R + IG V +
Sbjct: 84 RAAALGSINVI---RRERDGRLLGDNVDGAGFLGAAHKHGFEPAGKRALVIGCGGVGSAI 140
Query: 168 GVPLAIRTVGRLLYCNKIEA 187
LA + + C+ A
Sbjct: 141 AYALAEAGIASITLCDPSTA 160
>pdb|3T6H|A Chain A, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|B Chain B, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|C Chain C, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|D Chain D, 2.2 Angstrom Crystal Structure Of Tagrfp-T
Length = 238
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET--PDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKP 338
+N P NG ++ N E P G ++ L G GH + + KP
Sbjct: 122 VNFPSNGPVMQKKTLGWEANTEMLYPADGGLEGRTDMALKLVGGGHLICNFKTTYRSKKP 181
Query: 339 HKNLRELSIFYFGVRCQYIPQLEQ 362
KNL+ ++Y R + I + ++
Sbjct: 182 AKNLKMPGVYYVDHRLERIKEADK 205
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 26/87 (29%)
Query: 208 LPILELSYNHIPSHLHQCFSYCVLFQDVI---YDG-----DGNIVKCKIHDLVHDLAGSV 259
LP +E+ ++H +H+ C + L + VI YDG DGN+ +I LV DL
Sbjct: 476 LPKIEVQHHH--AHIASCMAEHNLDEKVIGIAYDGTGYGTDGNVWGAEI--LVCDL---- 527
Query: 260 SRTEWIEIVPSSISKLKHLWYLNLPGN 286
S ++ HL Y LPGN
Sbjct: 528 ----------KSFERIAHLKYKPLPGN 544
>pdb|3SVU|A Chain A, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|B Chain B, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|C Chain C, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|D Chain D, Crystal Structure Of Mkate Mutant S143c
Length = 233
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET------PDCNGCRSLAELPRILEGCGHTDVDVEALLD 334
+N P NG P K L E P G +++ L G GH +++
Sbjct: 126 VNFPSNG----PVMQKKTLGWEACTEMLYPADGGLEGRSDMALKLVGGGHLICNLKTTYR 181
Query: 335 DLKPHKNLRELSIFYFGVRCQYIPQLEQ 362
KP KNL+ ++Y R + I + ++
Sbjct: 182 SKKPAKNLKMPGVYYVDRRLERIKEADK 209
>pdb|3BX9|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BX9|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BXA|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXA|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXB|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXC|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
Length = 243
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 281 LNLPGNGITKLPNSVSKLLNLET------PDCNGCRSLAELPRILEGCGHTDVDVEALLD 334
+N P NG P K L E P G +++ L G GH +++
Sbjct: 134 VNFPSNG----PVMQKKTLGWEASTEMLYPADGGLEGRSDMALKLVGGGHLICNLKTTYR 189
Query: 335 DLKPHKNLRELSIFYFGVRCQYIPQLEQ 362
KP KNL+ ++Y R + I + ++
Sbjct: 190 SKKPAKNLKMPGVYYVDRRLERIKEADK 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,041,069
Number of Sequences: 62578
Number of extensions: 589406
Number of successful extensions: 1198
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 25
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)