Query 040680
Match_columns 459
No_of_seqs 324 out of 2561
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 10:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.2E-55 9.1E-60 455.2 26.1 441 4-448 178-788 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.1E-48 1.1E-52 422.4 34.9 384 3-409 205-721 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-37 4.8E-42 291.7 16.0 231 3-236 17-265 (287)
4 KOG0617 Ras suppressor protein 99.4 1.9E-15 4E-20 123.3 -4.4 145 265-448 45-190 (264)
5 PRK04841 transcriptional regul 99.4 1.7E-11 3.7E-16 133.9 22.5 238 4-260 31-332 (903)
6 PLN03210 Resistant to P. syrin 99.4 8.1E-13 1.8E-17 146.0 11.8 112 340-458 778-900 (1153)
7 PLN00113 leucine-rich repeat r 99.4 1.4E-13 3E-18 151.2 5.8 187 267-458 155-363 (968)
8 KOG0472 Leucine-rich repeat pr 99.3 3.2E-14 7E-19 130.8 -4.5 168 267-458 105-304 (565)
9 PLN00113 leucine-rich repeat r 99.3 2.5E-12 5.4E-17 141.4 8.8 173 266-458 202-387 (968)
10 KOG0617 Ras suppressor protein 99.3 5E-14 1.1E-18 115.0 -3.6 147 272-459 29-181 (264)
11 TIGR03015 pepcterm_ATPase puta 99.3 5.4E-10 1.2E-14 104.1 19.4 172 5-180 43-242 (269)
12 KOG0444 Cytoskeletal regulator 99.2 1.2E-12 2.6E-17 126.8 -1.9 160 267-448 117-285 (1255)
13 COG2909 MalT ATP-dependent tra 99.2 2.6E-09 5.7E-14 108.1 20.5 241 4-262 36-340 (894)
14 KOG4194 Membrane glycoprotein 99.2 6.4E-12 1.4E-16 121.0 0.8 213 208-457 80-347 (873)
15 PF05729 NACHT: NACHT domain 99.2 2.8E-10 6.1E-15 97.6 10.7 133 6-143 1-163 (166)
16 KOG0444 Cytoskeletal regulator 99.1 4.9E-12 1.1E-16 122.7 -1.4 145 265-447 234-379 (1255)
17 KOG0472 Leucine-rich repeat pr 99.1 2.2E-11 4.7E-16 112.4 0.1 97 332-448 427-544 (565)
18 KOG4194 Membrane glycoprotein 99.0 4.1E-11 8.8E-16 115.6 -0.8 94 335-446 336-431 (873)
19 PRK00411 cdc6 cell division co 99.0 9.1E-08 2E-12 94.3 20.6 217 5-231 55-307 (394)
20 PF13401 AAA_22: AAA domain; P 98.9 2.1E-09 4.5E-14 88.4 7.3 116 4-123 3-125 (131)
21 KOG0618 Serine/threonine phosp 98.9 1.4E-10 3.1E-15 117.6 -2.2 175 276-458 241-483 (1081)
22 KOG0532 Leucine-rich repeat (L 98.9 2.5E-10 5.3E-15 110.0 -1.7 141 265-448 110-251 (722)
23 PRK15387 E3 ubiquitin-protein 98.8 8.9E-09 1.9E-13 107.0 9.0 63 392-458 342-409 (788)
24 PRK15370 E3 ubiquitin-protein 98.8 2.3E-08 5E-13 104.4 9.9 163 277-458 200-374 (754)
25 KOG0618 Serine/threonine phosp 98.8 3.9E-10 8.4E-15 114.5 -3.3 162 265-444 276-490 (1081)
26 PF01637 Arch_ATPase: Archaeal 98.8 9.9E-08 2.1E-12 86.7 12.3 166 5-175 20-233 (234)
27 PRK15370 E3 ubiquitin-protein 98.7 1.3E-08 2.7E-13 106.3 6.6 68 364-457 325-394 (754)
28 PRK06893 DNA replication initi 98.7 1.3E-07 2.7E-12 85.5 11.9 139 5-174 39-201 (229)
29 COG3903 Predicted ATPase [Gene 98.7 2.5E-08 5.5E-13 93.6 7.5 222 4-233 13-252 (414)
30 TIGR02928 orc1/cdc6 family rep 98.7 1.2E-06 2.5E-11 85.5 18.5 170 4-175 39-246 (365)
31 PF13173 AAA_14: AAA domain 98.7 1E-07 2.3E-12 77.8 9.2 101 5-127 2-102 (128)
32 PF14580 LRR_9: Leucine-rich r 98.7 8.7E-09 1.9E-13 87.8 2.8 107 272-403 15-124 (175)
33 COG2256 MGS1 ATPase related to 98.6 8.5E-07 1.8E-11 83.0 13.9 137 8-171 51-207 (436)
34 PRK15387 E3 ubiquitin-protein 98.6 1.2E-07 2.6E-12 98.7 9.0 152 265-458 213-369 (788)
35 KOG4237 Extracellular matrix p 98.6 6.9E-09 1.5E-13 96.0 -0.5 55 265-319 79-135 (498)
36 cd01128 rho_factor Transcripti 98.6 9.5E-08 2.1E-12 86.6 6.9 88 5-93 16-112 (249)
37 cd00009 AAA The AAA+ (ATPases 98.6 4.8E-07 1E-11 75.5 10.6 107 4-124 18-130 (151)
38 PRK00080 ruvB Holliday junctio 98.6 7.2E-07 1.6E-11 85.4 12.6 46 129-178 179-224 (328)
39 TIGR00635 ruvB Holliday juncti 98.5 8E-07 1.7E-11 84.3 11.8 46 129-178 158-203 (305)
40 TIGR03420 DnaA_homol_Hda DnaA 98.5 9.8E-07 2.1E-11 79.8 11.7 93 4-123 37-132 (226)
41 PF14580 LRR_9: Leucine-rich r 98.5 2.6E-08 5.6E-13 84.9 1.2 113 271-402 36-150 (175)
42 KOG0532 Leucine-rich repeat (L 98.5 4.5E-09 9.8E-14 101.5 -4.3 151 265-459 87-242 (722)
43 PRK09376 rho transcription ter 98.5 3.7E-07 8E-12 86.4 7.1 88 6-94 170-266 (416)
44 TIGR00678 holB DNA polymerase 98.4 1E-05 2.2E-10 70.9 14.5 79 83-171 95-186 (188)
45 PRK14961 DNA polymerase III su 98.4 1.6E-05 3.5E-10 77.0 16.6 90 83-176 118-221 (363)
46 PRK13342 recombination factor 98.4 8.5E-06 1.9E-10 80.5 14.7 141 6-174 37-194 (413)
47 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.3E-13 88.0 -1.7 134 272-448 280-416 (490)
48 PRK15386 type III secretion pr 98.3 1.5E-06 3.3E-11 83.2 8.1 43 273-318 49-91 (426)
49 PRK14960 DNA polymerase III su 98.3 1.9E-05 4.2E-10 79.9 15.8 147 4-171 36-214 (702)
50 PRK14963 DNA polymerase III su 98.3 1.7E-06 3.7E-11 86.7 8.4 171 5-180 36-222 (504)
51 PRK14949 DNA polymerase III su 98.3 1.7E-05 3.7E-10 82.8 15.8 149 4-176 37-221 (944)
52 PRK08727 hypothetical protein; 98.3 1.2E-05 2.5E-10 72.9 13.0 134 6-170 42-198 (233)
53 PRK05564 DNA polymerase III su 98.3 2.5E-05 5.4E-10 74.3 15.7 146 4-174 25-188 (313)
54 PF13855 LRR_8: Leucine rich r 98.3 5.6E-07 1.2E-11 62.8 3.3 58 276-350 1-59 (61)
55 PF05496 RuvB_N: Holliday junc 98.3 4.4E-06 9.6E-11 73.0 9.3 140 6-177 51-222 (233)
56 KOG4658 Apoptotic ATPase [Sign 98.3 2.6E-07 5.6E-12 98.2 1.8 98 275-373 544-651 (889)
57 PRK07003 DNA polymerase III su 98.3 2.1E-05 4.6E-10 80.6 15.2 151 5-177 38-222 (830)
58 PLN03150 hypothetical protein; 98.3 1.4E-06 3E-11 90.4 7.0 111 277-407 419-530 (623)
59 COG4886 Leucine-rich repeat (L 98.3 5.6E-07 1.2E-11 88.8 3.6 161 265-448 128-295 (394)
60 TIGR00767 rho transcription te 98.3 3.7E-06 7.9E-11 80.2 8.9 89 5-94 168-265 (415)
61 PRK12323 DNA polymerase III su 98.3 3.5E-05 7.7E-10 77.9 16.0 92 82-177 122-227 (700)
62 PTZ00112 origin recognition co 98.2 2.9E-05 6.3E-10 80.2 15.3 175 6-180 782-986 (1164)
63 PRK06645 DNA polymerase III su 98.2 3.4E-05 7.4E-10 77.2 15.6 91 82-176 126-230 (507)
64 PRK14957 DNA polymerase III su 98.2 3.9E-05 8.4E-10 77.3 16.0 153 4-178 37-223 (546)
65 PRK08084 DNA replication initi 98.2 2.1E-05 4.5E-10 71.4 13.0 136 5-171 45-204 (235)
66 KOG2028 ATPase related to the 98.2 1.8E-05 3.9E-10 73.1 12.3 116 5-142 162-293 (554)
67 PRK12402 replication factor C 98.2 4.4E-05 9.6E-10 73.6 15.8 162 6-173 37-223 (337)
68 PRK05642 DNA replication initi 98.2 2E-05 4.4E-10 71.4 12.6 135 6-171 46-203 (234)
69 KOG3207 Beta-tubulin folding c 98.2 1.6E-07 3.4E-12 88.4 -1.4 100 337-448 219-318 (505)
70 cd00116 LRR_RI Leucine-rich re 98.2 2.5E-07 5.3E-12 88.5 -0.3 113 276-402 137-260 (319)
71 smart00382 AAA ATPases associa 98.2 1.7E-05 3.7E-10 65.5 10.4 88 5-96 2-90 (148)
72 PRK07940 DNA polymerase III su 98.2 6.1E-05 1.3E-09 73.2 15.6 82 83-173 116-210 (394)
73 PLN03025 replication factor C 98.2 4.1E-05 8.9E-10 73.0 14.0 150 7-176 36-201 (319)
74 PRK08903 DnaA regulatory inact 98.2 2.7E-05 5.9E-10 70.4 12.3 25 4-28 41-65 (227)
75 PF00004 AAA: ATPase family as 98.2 9.9E-06 2.1E-10 66.3 8.5 96 8-123 1-111 (132)
76 PRK08116 hypothetical protein; 98.2 1.2E-05 2.5E-10 74.3 9.8 103 6-123 115-220 (268)
77 PRK08691 DNA polymerase III su 98.2 6E-05 1.3E-09 77.1 15.6 90 83-176 118-221 (709)
78 PRK14964 DNA polymerase III su 98.1 8.5E-05 1.8E-09 73.8 15.9 151 5-176 35-218 (491)
79 KOG3207 Beta-tubulin folding c 98.1 3.4E-07 7.4E-12 86.1 -1.1 153 271-458 141-308 (505)
80 PRK14962 DNA polymerase III su 98.1 8.1E-05 1.8E-09 74.1 15.5 94 83-180 116-223 (472)
81 PF13855 LRR_8: Leucine rich r 98.1 5.9E-06 1.3E-10 57.6 5.3 60 364-441 1-60 (61)
82 PRK14958 DNA polymerase III su 98.1 0.0001 2.3E-09 74.2 16.2 151 5-176 38-221 (509)
83 TIGR02903 spore_lon_C ATP-depe 98.1 5.3E-05 1.1E-09 78.3 14.1 171 5-179 175-398 (615)
84 PRK09087 hypothetical protein; 98.1 6.2E-05 1.3E-09 67.7 12.9 129 5-174 44-193 (226)
85 PF00308 Bac_DnaA: Bacterial d 98.1 6E-05 1.3E-09 67.5 12.6 123 6-146 35-182 (219)
86 PRK14969 DNA polymerase III su 98.1 0.00011 2.3E-09 74.6 15.7 153 4-177 37-222 (527)
87 PRK00440 rfc replication facto 98.1 0.00013 2.8E-09 69.7 15.4 146 6-172 39-199 (319)
88 PRK07994 DNA polymerase III su 98.1 7.8E-05 1.7E-09 76.4 14.3 91 82-176 117-221 (647)
89 PRK14956 DNA polymerase III su 98.1 4.9E-05 1.1E-09 74.7 12.2 164 5-176 40-223 (484)
90 PRK04195 replication factor C 98.1 9E-05 2E-09 74.8 14.6 143 5-173 39-199 (482)
91 PF05673 DUF815: Protein of un 98.0 0.00015 3.3E-09 64.4 13.8 99 5-128 52-155 (249)
92 PRK14087 dnaA chromosomal repl 98.0 0.00013 2.8E-09 72.6 14.9 154 6-177 142-320 (450)
93 cd00116 LRR_RI Leucine-rich re 98.0 7.1E-07 1.5E-11 85.2 -1.0 115 331-458 156-285 (319)
94 PRK14955 DNA polymerase III su 98.0 0.00013 2.7E-09 71.7 14.7 90 83-176 126-229 (397)
95 PRK14951 DNA polymerase III su 98.0 0.00015 3.3E-09 74.1 15.5 86 83-172 123-221 (618)
96 PRK13341 recombination factor 98.0 3.7E-05 8.1E-10 80.3 11.2 137 7-170 54-211 (725)
97 PF12799 LRR_4: Leucine Rich r 98.0 4.6E-06 9.9E-11 53.5 2.8 40 276-316 1-40 (44)
98 COG1474 CDC6 Cdc6-related prot 98.0 0.00028 6E-09 68.0 16.2 136 7-144 44-204 (366)
99 PF04665 Pox_A32: Poxvirus A32 98.0 3.6E-05 7.8E-10 68.8 9.3 41 1-43 9-49 (241)
100 KOG1259 Nischarin, modulator o 98.0 8.1E-07 1.8E-11 79.7 -1.2 120 265-409 296-415 (490)
101 TIGR01242 26Sp45 26S proteasom 98.0 2.2E-05 4.9E-10 76.3 8.5 142 4-170 155-328 (364)
102 TIGR02397 dnaX_nterm DNA polym 98.0 0.00031 6.7E-09 68.2 16.4 148 5-174 36-216 (355)
103 PRK05707 DNA polymerase III su 98.0 0.00028 6E-09 67.1 15.5 84 84-176 107-203 (328)
104 PF05621 TniB: Bacterial TniB 98.0 0.00028 6.1E-09 64.8 14.7 166 5-170 61-255 (302)
105 PRK05896 DNA polymerase III su 98.0 0.00026 5.7E-09 71.6 15.7 91 84-178 119-223 (605)
106 PRK07471 DNA polymerase III su 98.0 0.00031 6.7E-09 67.8 15.6 86 83-176 140-238 (365)
107 PRK14959 DNA polymerase III su 98.0 0.00029 6.4E-09 71.7 16.0 94 83-180 118-225 (624)
108 PF13191 AAA_16: AAA ATPase do 97.9 1.9E-05 4.2E-10 68.8 6.4 25 4-28 23-47 (185)
109 PLN03150 hypothetical protein; 97.9 1.9E-05 4.2E-10 82.0 6.9 99 333-448 435-533 (623)
110 KOG2120 SCF ubiquitin ligase, 97.9 4.6E-07 1E-11 81.2 -4.5 62 274-350 208-270 (419)
111 COG4886 Leucine-rich repeat (L 97.9 6.2E-06 1.3E-10 81.3 2.7 151 270-458 110-284 (394)
112 PRK09112 DNA polymerase III su 97.9 0.00024 5.1E-09 68.2 13.3 88 83-176 140-240 (351)
113 CHL00181 cbbX CbbX; Provisiona 97.9 0.00024 5.1E-09 66.3 12.9 21 7-27 61-81 (287)
114 PRK14952 DNA polymerase III su 97.9 0.00049 1.1E-08 70.2 15.9 94 83-180 117-224 (584)
115 KOG0989 Replication factor C, 97.9 0.00028 6.2E-09 64.1 12.3 160 5-180 57-235 (346)
116 PRK14950 DNA polymerase III su 97.9 0.0007 1.5E-08 69.9 17.0 87 83-173 119-218 (585)
117 PRK14953 DNA polymerase III su 97.8 0.001 2.2E-08 66.7 17.3 87 83-173 118-217 (486)
118 PRK08181 transposase; Validate 97.8 8.3E-05 1.8E-09 68.3 8.6 102 5-124 106-209 (269)
119 PRK12377 putative replication 97.8 4.6E-05 9.9E-10 69.1 6.8 100 6-122 102-204 (248)
120 KOG3665 ZYG-1-like serine/thre 97.8 5.3E-06 1.2E-10 86.1 0.8 135 276-440 122-260 (699)
121 PRK14970 DNA polymerase III su 97.8 0.00054 1.2E-08 66.8 14.7 147 4-171 38-204 (367)
122 PRK07764 DNA polymerase III su 97.8 0.00071 1.5E-08 71.8 16.3 85 83-171 119-216 (824)
123 PF01695 IstB_IS21: IstB-like 97.8 2.5E-05 5.4E-10 67.4 4.7 100 5-123 47-149 (178)
124 PRK15386 type III secretion pr 97.8 8.5E-05 1.8E-09 71.4 8.6 41 277-319 73-114 (426)
125 PRK03992 proteasome-activating 97.8 0.00014 3.1E-09 71.1 10.4 24 4-27 164-187 (389)
126 KOG4237 Extracellular matrix p 97.8 4.4E-06 9.5E-11 77.9 -0.4 152 270-441 158-357 (498)
127 PRK08451 DNA polymerase III su 97.8 0.0013 2.8E-08 66.1 16.9 87 83-173 116-215 (535)
128 TIGR02881 spore_V_K stage V sp 97.8 0.00037 8E-09 64.4 12.1 22 6-27 43-64 (261)
129 PRK09111 DNA polymerase III su 97.8 0.00096 2.1E-08 68.4 16.1 87 83-173 131-230 (598)
130 TIGR00362 DnaA chromosomal rep 97.7 0.00065 1.4E-08 67.1 14.3 144 6-171 137-305 (405)
131 COG1222 RPT1 ATP-dependent 26S 97.7 0.00038 8.2E-09 64.6 11.4 153 3-181 183-372 (406)
132 PRK07133 DNA polymerase III su 97.7 0.0012 2.6E-08 68.5 16.2 91 83-177 117-221 (725)
133 PHA02544 44 clamp loader, smal 97.7 0.00031 6.7E-09 67.0 11.5 98 5-124 43-141 (316)
134 PRK14088 dnaA chromosomal repl 97.7 0.00062 1.4E-08 67.6 13.8 142 7-169 132-298 (440)
135 KOG2543 Origin recognition com 97.7 0.00052 1.1E-08 64.3 11.9 89 2-95 27-126 (438)
136 PRK05541 adenylylsulfate kinas 97.7 0.00016 3.5E-09 62.5 8.3 38 3-42 5-42 (176)
137 PRK06305 DNA polymerase III su 97.7 0.00074 1.6E-08 67.2 13.9 91 83-177 120-224 (451)
138 PRK06921 hypothetical protein; 97.7 0.00026 5.6E-09 65.3 9.7 99 5-123 117-224 (266)
139 PRK14954 DNA polymerase III su 97.7 0.0012 2.6E-08 67.9 15.4 90 83-176 126-229 (620)
140 TIGR02880 cbbX_cfxQ probable R 97.7 0.00062 1.3E-08 63.6 12.3 21 7-27 60-80 (284)
141 PRK11331 5-methylcytosine-spec 97.7 9.4E-05 2E-09 71.9 6.9 91 5-99 194-287 (459)
142 PRK06620 hypothetical protein; 97.7 0.00065 1.4E-08 60.5 11.7 23 6-28 45-67 (214)
143 COG1373 Predicted ATPase (AAA+ 97.7 0.00079 1.7E-08 65.9 13.2 107 7-138 39-162 (398)
144 PRK09183 transposase/IS protei 97.7 0.0002 4.4E-09 65.8 8.6 101 5-123 102-205 (259)
145 PRK08118 topology modulation p 97.7 2.7E-05 5.8E-10 66.6 2.5 35 6-40 2-37 (167)
146 PTZ00361 26 proteosome regulat 97.6 0.00032 6.9E-09 69.0 10.2 30 4-35 216-245 (438)
147 KOG2120 SCF ubiquitin ligase, 97.6 3.5E-06 7.6E-11 75.7 -3.1 138 272-440 230-373 (419)
148 PRK14948 DNA polymerase III su 97.6 0.0022 4.7E-08 66.3 16.7 87 83-173 120-219 (620)
149 PRK12422 chromosomal replicati 97.6 0.00061 1.3E-08 67.6 12.2 122 6-145 142-286 (445)
150 TIGR02237 recomb_radB DNA repa 97.6 0.00018 3.9E-09 64.1 7.7 48 3-53 10-57 (209)
151 PRK06835 DNA replication prote 97.6 0.00014 3.1E-09 68.8 7.3 103 5-123 183-288 (329)
152 PRK06526 transposase; Provisio 97.6 0.00017 3.8E-09 65.8 7.5 101 5-124 98-201 (254)
153 PTZ00454 26S protease regulato 97.6 0.00032 7E-09 68.4 9.5 24 4-27 178-201 (398)
154 PRK00149 dnaA chromosomal repl 97.6 0.00064 1.4E-08 68.1 12.0 144 6-171 149-317 (450)
155 PRK14965 DNA polymerase III su 97.6 0.0026 5.6E-08 65.5 16.5 91 83-177 118-222 (576)
156 PRK14086 dnaA chromosomal repl 97.6 0.0015 3.3E-08 66.3 14.4 142 6-169 315-481 (617)
157 PRK14971 DNA polymerase III su 97.6 0.0017 3.7E-08 67.0 15.1 85 83-171 120-217 (614)
158 PRK08939 primosomal protein Dn 97.6 0.00037 7.9E-09 65.6 9.4 110 5-139 156-269 (306)
159 PRK07952 DNA replication prote 97.6 0.00029 6.2E-09 63.8 8.2 101 6-122 100-203 (244)
160 TIGR03689 pup_AAA proteasome A 97.6 0.0007 1.5E-08 67.7 11.5 25 4-28 215-239 (512)
161 PRK06647 DNA polymerase III su 97.6 0.0032 7E-08 64.3 16.5 85 83-171 118-215 (563)
162 COG3899 Predicted ATPase [Gene 97.6 0.0013 2.8E-08 70.6 14.1 142 83-231 153-319 (849)
163 PF12799 LRR_4: Leucine Rich r 97.5 9.9E-05 2.2E-09 47.2 3.5 42 392-449 1-42 (44)
164 PRK04296 thymidine kinase; Pro 97.5 0.00015 3.3E-09 63.4 5.8 114 6-127 3-119 (190)
165 cd01393 recA_like RecA is a b 97.5 0.00043 9.3E-09 62.5 9.0 88 3-93 17-123 (226)
166 COG3267 ExeA Type II secretory 97.5 0.0057 1.2E-07 54.5 15.2 169 5-179 51-248 (269)
167 PRK08769 DNA polymerase III su 97.5 0.0022 4.8E-08 60.5 13.6 84 83-176 112-208 (319)
168 COG1484 DnaC DNA replication p 97.5 0.00031 6.7E-09 64.3 7.6 80 5-101 105-184 (254)
169 PF14516 AAA_35: AAA-like doma 97.5 0.014 3E-07 55.8 19.1 169 5-183 31-246 (331)
170 KOG1969 DNA replication checkp 97.5 0.00044 9.6E-09 69.8 9.0 89 3-109 324-412 (877)
171 cd01120 RecA-like_NTPases RecA 97.5 0.00089 1.9E-08 56.7 9.9 39 7-47 1-39 (165)
172 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00039 8.5E-09 63.2 7.9 50 3-52 17-70 (235)
173 PRK07261 topology modulation p 97.5 0.00029 6.3E-09 60.5 6.5 22 7-28 2-23 (171)
174 PF00910 RNA_helicase: RNA hel 97.5 0.00031 6.7E-09 55.2 6.1 20 8-27 1-20 (107)
175 PRK09361 radB DNA repair and r 97.5 0.00039 8.4E-09 62.8 7.5 46 3-51 21-66 (225)
176 PF00448 SRP54: SRP54-type pro 97.5 0.00012 2.5E-09 64.2 3.9 88 5-94 1-93 (196)
177 PRK10536 hypothetical protein; 97.5 0.00072 1.6E-08 61.0 8.9 114 5-122 74-211 (262)
178 COG2607 Predicted ATPase (AAA+ 97.5 0.0028 6.1E-08 55.7 12.1 81 6-111 86-167 (287)
179 cd01394 radB RadB. The archaea 97.4 0.00046 1E-08 61.9 7.7 43 3-47 17-59 (218)
180 PTZ00202 tuzin; Provisional 97.4 0.0042 9.1E-08 60.0 14.1 126 5-141 286-432 (550)
181 PRK05563 DNA polymerase III su 97.4 0.0083 1.8E-07 61.5 17.1 85 83-171 118-215 (559)
182 KOG1859 Leucine-rich repeat pr 97.4 3.1E-06 6.7E-11 84.6 -7.3 150 269-445 102-268 (1096)
183 cd03247 ABCC_cytochrome_bd The 97.4 0.00099 2.1E-08 57.7 9.1 116 5-126 28-159 (178)
184 cd00983 recA RecA is a bacter 97.4 0.00028 6E-09 66.4 5.7 84 3-93 53-142 (325)
185 COG1618 Predicted nucleotide k 97.4 0.00018 3.9E-09 59.0 3.8 39 1-41 1-41 (179)
186 TIGR02012 tigrfam_recA protein 97.4 0.00046 1E-08 64.8 7.1 85 3-94 53-143 (321)
187 PRK06871 DNA polymerase III su 97.4 0.0091 2E-07 56.5 15.6 80 83-171 106-198 (325)
188 cd03214 ABC_Iron-Siderophores_ 97.4 0.0029 6.3E-08 54.8 11.5 119 5-126 25-160 (180)
189 PRK06067 flagellar accessory p 97.3 0.0014 3E-08 59.6 9.8 87 3-94 23-130 (234)
190 cd03228 ABCC_MRP_Like The MRP 97.3 0.0021 4.4E-08 55.3 10.1 116 4-126 27-157 (171)
191 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0032 6.9E-08 52.4 10.9 103 5-126 26-129 (144)
192 PRK09354 recA recombinase A; P 97.3 0.00068 1.5E-08 64.3 7.4 84 3-93 58-147 (349)
193 PHA00729 NTP-binding motif con 97.3 0.00083 1.8E-08 59.5 7.4 22 6-27 18-39 (226)
194 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0014 3E-08 55.0 8.2 113 6-124 3-138 (159)
195 PRK11889 flhF flagellar biosyn 97.3 0.0028 6.1E-08 60.7 11.2 113 5-119 241-357 (436)
196 CHL00176 ftsH cell division pr 97.3 0.004 8.6E-08 64.5 13.2 140 4-168 215-386 (638)
197 PF02562 PhoH: PhoH-like prote 97.3 0.0004 8.6E-09 60.8 5.1 116 5-124 19-156 (205)
198 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0042 9.1E-08 57.4 12.2 42 5-51 21-62 (262)
199 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.3E-09 57.6 3.0 21 7-27 1-21 (121)
200 PF13177 DNA_pol3_delta2: DNA 97.3 0.0031 6.7E-08 53.6 10.4 104 5-125 19-143 (162)
201 PRK07399 DNA polymerase III su 97.3 0.02 4.3E-07 54.2 16.9 162 5-175 26-220 (314)
202 PF08423 Rad51: Rad51; InterP 97.3 0.00084 1.8E-08 61.6 7.4 56 4-60 37-96 (256)
203 cd03216 ABC_Carb_Monos_I This 97.3 0.0018 4E-08 55.1 9.0 114 5-125 26-143 (163)
204 PRK07993 DNA polymerase III su 97.3 0.01 2.3E-07 56.6 15.0 82 83-173 107-201 (334)
205 PRK08058 DNA polymerase III su 97.3 0.0053 1.2E-07 58.7 12.9 59 83-141 109-180 (329)
206 COG2255 RuvB Holliday junction 97.2 0.0048 1E-07 55.7 11.6 143 6-180 53-227 (332)
207 KOG2227 Pre-initiation complex 97.2 0.0062 1.4E-07 58.8 12.7 177 4-180 174-376 (529)
208 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0053 1.1E-07 52.4 11.4 116 5-125 27-149 (166)
209 PLN00020 ribulose bisphosphate 97.2 0.00086 1.9E-08 63.3 6.9 31 3-35 146-176 (413)
210 COG0470 HolB ATPase involved i 97.2 0.0019 4.2E-08 61.7 9.6 102 5-124 24-149 (325)
211 KOG0744 AAA+-type ATPase [Post 97.2 0.0014 2.9E-08 60.1 7.7 39 5-43 177-217 (423)
212 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0047 1E-07 61.4 11.9 72 4-95 222-293 (802)
213 PF07728 AAA_5: AAA domain (dy 97.2 0.00017 3.8E-09 59.6 1.9 89 8-109 2-90 (139)
214 COG0593 DnaA ATPase involved i 97.2 0.0026 5.7E-08 61.4 10.0 125 5-148 113-262 (408)
215 cd01131 PilT Pilus retraction 97.2 0.00069 1.5E-08 59.7 5.7 108 6-124 2-109 (198)
216 PRK06964 DNA polymerase III su 97.2 0.02 4.2E-07 54.7 15.8 80 83-174 131-223 (342)
217 cd01133 F1-ATPase_beta F1 ATP 97.2 0.00087 1.9E-08 61.3 6.4 86 6-93 70-172 (274)
218 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.0082 1.8E-07 54.1 12.4 124 5-128 30-203 (254)
219 cd03246 ABCC_Protease_Secretio 97.2 0.0021 4.6E-08 55.3 8.5 115 5-126 28-158 (173)
220 PRK12724 flagellar biosynthesi 97.2 0.0026 5.5E-08 61.7 9.7 23 5-27 223-245 (432)
221 KOG0531 Protein phosphatase 1, 97.2 9.1E-05 2E-09 73.4 -0.2 108 270-402 89-196 (414)
222 PRK12608 transcription termina 97.2 0.0022 4.7E-08 61.2 9.0 86 6-93 134-229 (380)
223 KOG1859 Leucine-rich repeat pr 97.2 1.2E-05 2.6E-10 80.6 -6.3 105 268-374 179-289 (1096)
224 TIGR03499 FlhF flagellar biosy 97.1 0.0017 3.7E-08 60.5 8.2 88 4-93 193-281 (282)
225 KOG0531 Protein phosphatase 1, 97.1 0.00015 3.4E-09 71.8 1.3 81 272-374 114-196 (414)
226 COG0468 RecA RecA/RadA recombi 97.1 0.0022 4.7E-08 58.9 8.6 88 3-93 58-150 (279)
227 PRK08699 DNA polymerase III su 97.1 0.017 3.7E-07 54.9 14.8 57 85-141 114-183 (325)
228 TIGR02238 recomb_DMC1 meiotic 97.1 0.0014 3E-08 61.8 7.4 58 3-61 94-155 (313)
229 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0017 3.6E-08 56.0 7.2 108 4-126 24-134 (177)
230 PRK08233 hypothetical protein; 97.1 0.0017 3.7E-08 56.3 7.5 24 5-28 3-26 (182)
231 COG4608 AppF ABC-type oligopep 97.1 0.0023 5E-08 57.7 8.1 125 5-132 39-178 (268)
232 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0025 5.3E-08 68.9 9.9 109 6-123 596-717 (852)
233 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0036 7.8E-08 62.7 10.3 25 3-27 257-281 (489)
234 PRK05800 cobU adenosylcobinami 97.1 0.001 2.2E-08 56.9 5.6 155 6-173 2-169 (170)
235 PF07724 AAA_2: AAA domain (Cd 97.1 0.0011 2.3E-08 56.8 5.7 43 4-48 2-45 (171)
236 cd01122 GP4d_helicase GP4d_hel 97.1 0.0089 1.9E-07 55.6 12.4 53 4-59 29-81 (271)
237 PRK00771 signal recognition pa 97.1 0.0057 1.2E-07 60.3 11.4 89 4-95 94-186 (437)
238 PRK12723 flagellar biosynthesi 97.1 0.0057 1.2E-07 59.3 11.2 114 5-120 174-293 (388)
239 cd03238 ABC_UvrA The excision 97.1 0.0046 9.9E-08 53.2 9.4 113 4-126 20-151 (176)
240 PRK12726 flagellar biosynthesi 97.1 0.0068 1.5E-07 57.9 11.2 104 4-109 205-312 (407)
241 COG0572 Udk Uridine kinase [Nu 97.1 0.00095 2.1E-08 58.4 5.1 28 5-34 8-35 (218)
242 COG2884 FtsE Predicted ATPase 97.1 0.01 2.2E-07 50.4 11.0 121 5-128 28-201 (223)
243 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0029 6.2E-08 54.5 8.1 117 4-126 25-157 (173)
244 PRK05703 flhF flagellar biosyn 97.0 0.008 1.7E-07 59.4 12.1 103 5-109 221-326 (424)
245 KOG0733 Nuclear AAA ATPase (VC 97.0 0.01 2.2E-07 59.1 12.5 120 5-144 545-693 (802)
246 cd00544 CobU Adenosylcobinamid 97.0 0.0032 6.9E-08 53.7 8.1 151 7-171 1-167 (169)
247 TIGR01241 FtsH_fam ATP-depende 97.0 0.01 2.2E-07 60.3 13.1 25 4-28 87-111 (495)
248 PRK14722 flhF flagellar biosyn 97.0 0.0061 1.3E-07 58.6 10.8 88 4-95 136-226 (374)
249 KOG2739 Leucine-rich acidic nu 97.0 0.00019 4.2E-09 63.7 0.6 109 272-402 39-153 (260)
250 PRK10865 protein disaggregatio 97.0 0.0029 6.4E-08 68.1 9.6 96 6-110 599-696 (857)
251 PRK14974 cell division protein 97.0 0.0064 1.4E-07 57.8 10.7 115 5-121 140-261 (336)
252 PF00485 PRK: Phosphoribulokin 97.0 0.0024 5.2E-08 56.1 7.4 78 7-87 1-86 (194)
253 cd03115 SRP The signal recogni 97.0 0.007 1.5E-07 52.0 10.0 86 7-94 2-92 (173)
254 TIGR03345 VI_ClpV1 type VI sec 97.0 0.002 4.4E-08 69.1 7.9 109 6-123 597-718 (852)
255 PRK06090 DNA polymerase III su 97.0 0.033 7.2E-07 52.6 15.0 81 84-176 108-201 (319)
256 cd03229 ABC_Class3 This class 96.9 0.0037 8.1E-08 54.1 7.9 119 5-126 26-163 (178)
257 KOG1909 Ran GTPase-activating 96.9 0.00011 2.4E-09 67.7 -1.8 41 270-310 86-131 (382)
258 PLN03187 meiotic recombination 96.9 0.0027 5.8E-08 60.5 7.4 58 3-61 124-185 (344)
259 PRK08533 flagellar accessory p 96.9 0.0091 2E-07 53.9 10.5 50 3-56 22-71 (230)
260 PRK04132 replication factor C 96.9 0.041 8.8E-07 58.6 16.6 145 13-177 574-733 (846)
261 TIGR00235 udk uridine kinase. 96.9 0.00077 1.7E-08 59.9 3.4 26 2-27 3-28 (207)
262 COG1875 NYN ribonuclease and A 96.9 0.0024 5.2E-08 59.6 6.4 120 2-124 242-388 (436)
263 PRK13695 putative NTPase; Prov 96.9 0.0014 3E-08 56.5 4.7 22 7-28 2-23 (174)
264 TIGR02858 spore_III_AA stage I 96.9 0.0035 7.6E-08 57.7 7.6 130 6-144 112-249 (270)
265 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0034 7.3E-08 59.5 7.6 57 3-60 94-154 (316)
266 PRK05973 replicative DNA helic 96.9 0.012 2.6E-07 53.0 10.6 42 3-46 62-103 (237)
267 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0045 9.7E-08 52.3 7.6 116 5-126 25-142 (157)
268 TIGR02639 ClpA ATP-dependent C 96.9 0.0052 1.1E-07 65.4 9.7 92 7-110 486-579 (731)
269 cd01124 KaiC KaiC is a circadi 96.8 0.0055 1.2E-07 53.4 8.3 38 7-46 1-38 (187)
270 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3.1E-07 62.3 12.9 24 4-27 486-509 (733)
271 PF00154 RecA: recA bacterial 96.8 0.0021 4.6E-08 60.2 5.9 84 3-93 51-140 (322)
272 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.015 3.3E-07 51.8 11.1 23 5-27 29-51 (213)
273 PRK00889 adenylylsulfate kinas 96.8 0.0052 1.1E-07 53.0 7.9 25 3-27 2-26 (175)
274 CHL00095 clpC Clp protease ATP 96.8 0.0045 9.7E-08 66.7 8.9 108 7-123 541-661 (821)
275 PF13604 AAA_30: AAA domain; P 96.8 0.0019 4.2E-08 56.7 5.1 106 4-121 17-128 (196)
276 cd02025 PanK Pantothenate kina 96.8 0.0047 1E-07 55.3 7.6 21 7-27 1-21 (220)
277 TIGR01243 CDC48 AAA family ATP 96.8 0.0078 1.7E-07 64.2 10.5 24 4-27 211-234 (733)
278 cd03244 ABCC_MRP_domain2 Domai 96.8 0.019 4.2E-07 51.5 11.7 25 4-28 29-53 (221)
279 KOG0727 26S proteasome regulat 96.8 0.026 5.5E-07 50.1 11.7 26 3-28 187-212 (408)
280 PRK05480 uridine/cytidine kina 96.8 0.0012 2.6E-08 58.8 3.7 27 1-27 2-28 (209)
281 PRK15453 phosphoribulokinase; 96.8 0.0069 1.5E-07 55.5 8.4 27 1-27 1-27 (290)
282 PRK04328 hypothetical protein; 96.8 0.0093 2E-07 54.6 9.4 42 3-46 21-62 (249)
283 KOG0730 AAA+-type ATPase [Post 96.8 0.011 2.4E-07 59.5 10.4 30 4-35 467-496 (693)
284 COG1136 SalX ABC-type antimicr 96.8 0.02 4.4E-07 50.8 11.1 58 71-128 147-207 (226)
285 PTZ00035 Rad51 protein; Provis 96.8 0.0066 1.4E-07 58.0 8.7 58 3-61 116-177 (337)
286 TIGR00064 ftsY signal recognit 96.7 0.007 1.5E-07 56.0 8.5 89 5-95 72-165 (272)
287 KOG3665 ZYG-1-like serine/thre 96.7 0.00043 9.4E-09 72.1 0.6 36 275-310 147-184 (699)
288 COG1120 FepC ABC-type cobalami 96.7 0.021 4.5E-07 51.8 11.2 25 3-27 26-50 (258)
289 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.015 3.3E-07 52.5 10.6 42 3-46 18-59 (229)
290 COG1126 GlnQ ABC-type polar am 96.7 0.021 4.5E-07 49.7 10.5 121 5-128 28-200 (240)
291 PTZ00301 uridine kinase; Provi 96.7 0.0014 3E-08 58.1 3.3 24 4-27 2-25 (210)
292 COG1428 Deoxynucleoside kinase 96.7 0.0029 6.2E-08 54.8 5.1 51 3-58 2-52 (216)
293 KOG0741 AAA+-type ATPase [Post 96.7 0.0086 1.9E-07 58.6 8.8 32 6-41 539-570 (744)
294 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0059 1.3E-07 56.2 7.5 41 3-45 34-74 (259)
295 PLN03186 DNA repair protein RA 96.7 0.0068 1.5E-07 57.8 7.9 58 3-61 121-182 (342)
296 cd01125 repA Hexameric Replica 96.7 0.015 3.2E-07 53.0 9.9 22 7-28 3-24 (239)
297 cd03369 ABCC_NFT1 Domain 2 of 96.7 0.027 5.8E-07 50.0 11.4 23 5-27 34-56 (207)
298 PRK07667 uridine kinase; Provi 96.7 0.0023 5E-08 56.1 4.5 25 3-27 15-39 (193)
299 PRK06762 hypothetical protein; 96.6 0.0014 3.1E-08 55.9 3.0 23 5-27 2-24 (166)
300 PRK00300 gmk guanylate kinase; 96.6 0.0016 3.6E-08 57.7 3.4 28 1-28 1-28 (205)
301 PF13238 AAA_18: AAA domain; P 96.6 0.0014 3.1E-08 53.1 2.8 21 8-28 1-21 (129)
302 cd03215 ABC_Carb_Monos_II This 96.6 0.025 5.3E-07 49.1 10.6 115 5-125 26-165 (182)
303 PRK10867 signal recognition pa 96.6 0.02 4.3E-07 56.4 11.0 89 4-94 99-193 (433)
304 KOG0991 Replication factor C, 96.6 0.034 7.4E-07 48.8 11.0 22 6-27 49-70 (333)
305 KOG2035 Replication factor C, 96.6 0.018 3.8E-07 51.9 9.4 128 87-218 130-282 (351)
306 cd03232 ABC_PDR_domain2 The pl 96.6 0.017 3.7E-07 50.6 9.6 23 5-27 33-55 (192)
307 cd02019 NK Nucleoside/nucleoti 96.6 0.0015 3.3E-08 46.5 2.4 21 7-27 1-21 (69)
308 TIGR00602 rad24 checkpoint pro 96.6 0.0042 9.1E-08 64.0 6.4 25 4-28 109-133 (637)
309 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.0095 2E-07 54.2 8.1 49 3-55 19-67 (237)
310 TIGR03345 VI_ClpV1 type VI sec 96.6 0.018 3.9E-07 62.0 11.4 22 6-27 209-230 (852)
311 KOG1644 U2-associated snRNP A' 96.6 0.0028 6E-08 54.3 4.1 36 278-315 44-79 (233)
312 PF07693 KAP_NTPase: KAP famil 96.6 0.034 7.4E-07 53.2 12.2 26 3-28 18-43 (325)
313 KOG0735 AAA+-type ATPase [Post 96.5 0.0067 1.5E-07 61.4 7.3 75 4-94 430-504 (952)
314 KOG2982 Uncharacterized conser 96.5 0.0013 2.8E-08 59.6 1.9 45 390-447 222-266 (418)
315 COG0542 clpA ATP-binding subun 96.5 0.0064 1.4E-07 63.2 7.1 98 6-111 522-620 (786)
316 PRK06547 hypothetical protein; 96.5 0.0021 4.6E-08 55.1 3.1 26 3-28 13-38 (172)
317 PF13671 AAA_33: AAA domain; P 96.5 0.0021 4.4E-08 53.3 3.0 21 7-27 1-21 (143)
318 PRK06002 fliI flagellum-specif 96.5 0.016 3.5E-07 56.8 9.4 86 5-93 165-263 (450)
319 PRK06217 hypothetical protein; 96.5 0.0085 1.8E-07 52.1 6.8 23 6-28 2-24 (183)
320 PRK04040 adenylate kinase; Pro 96.5 0.0021 4.5E-08 56.0 2.9 23 5-27 2-24 (188)
321 cd03245 ABCC_bacteriocin_expor 96.5 0.045 9.8E-07 49.1 11.7 25 4-28 29-53 (220)
322 TIGR00959 ffh signal recogniti 96.5 0.021 4.5E-07 56.3 10.1 88 5-94 99-192 (428)
323 TIGR02639 ClpA ATP-dependent C 96.5 0.027 5.8E-07 60.0 11.8 23 6-28 204-226 (731)
324 PF00560 LRR_1: Leucine Rich R 96.5 0.0012 2.7E-08 35.1 0.9 21 277-297 1-21 (22)
325 COG2842 Uncharacterized ATPase 96.5 0.081 1.8E-06 48.4 13.0 133 5-148 94-228 (297)
326 PRK14721 flhF flagellar biosyn 96.4 0.014 3.1E-07 57.0 8.8 25 3-27 189-213 (420)
327 cd02027 APSK Adenosine 5'-phos 96.4 0.0088 1.9E-07 50.0 6.4 21 7-27 1-21 (149)
328 PHA02244 ATPase-like protein 96.4 0.011 2.3E-07 56.3 7.6 100 6-123 120-230 (383)
329 cd03213 ABCG_EPDR ABCG transpo 96.4 0.03 6.6E-07 49.1 10.2 118 4-124 34-171 (194)
330 PRK12727 flagellar biosynthesi 96.4 0.009 2E-07 59.6 7.4 88 4-95 349-439 (559)
331 cd03217 ABC_FeS_Assembly ABC-t 96.4 0.023 5E-07 50.1 9.3 118 4-125 25-165 (200)
332 PRK09519 recA DNA recombinatio 96.4 0.0083 1.8E-07 62.9 7.3 85 3-94 58-148 (790)
333 TIGR02868 CydC thiol reductant 96.4 0.026 5.7E-07 58.0 11.0 24 4-27 360-383 (529)
334 COG0464 SpoVK ATPases of the A 96.4 0.042 9.2E-07 55.9 12.4 31 3-35 274-304 (494)
335 KOG2982 Uncharacterized conser 96.4 0.0042 9E-08 56.4 4.3 38 272-309 93-131 (418)
336 TIGR00763 lon ATP-dependent pr 96.4 0.027 5.9E-07 60.4 11.3 29 5-35 347-375 (775)
337 PRK06696 uridine kinase; Valid 96.4 0.0025 5.4E-08 57.4 3.0 24 4-27 21-44 (223)
338 cd03237 ABC_RNaseL_inhibitor_d 96.4 0.039 8.4E-07 50.4 10.9 122 5-126 25-178 (246)
339 cd03283 ABC_MutS-like MutS-lik 96.4 0.024 5.3E-07 49.9 9.2 23 5-27 25-47 (199)
340 PF01583 APS_kinase: Adenylyls 96.4 0.0034 7.3E-08 52.4 3.5 36 5-42 2-37 (156)
341 COG0563 Adk Adenylate kinase a 96.4 0.0049 1.1E-07 53.0 4.6 22 7-28 2-23 (178)
342 PF14532 Sigma54_activ_2: Sigm 96.4 0.0053 1.2E-07 50.6 4.6 89 4-124 20-110 (138)
343 TIGR03574 selen_PSTK L-seryl-t 96.4 0.021 4.6E-07 52.3 9.1 21 7-27 1-21 (249)
344 COG0467 RAD55 RecA-superfamily 96.4 0.007 1.5E-07 55.9 5.9 42 3-46 21-62 (260)
345 PRK13948 shikimate kinase; Pro 96.4 0.0028 6.1E-08 54.7 3.0 27 1-27 6-32 (182)
346 PRK09544 znuC high-affinity zi 96.3 0.04 8.6E-07 50.6 10.8 25 4-28 29-53 (251)
347 KOG0728 26S proteasome regulat 96.3 0.1 2.2E-06 46.4 12.5 36 4-46 180-215 (404)
348 cd03254 ABCC_Glucan_exporter_l 96.3 0.057 1.2E-06 48.8 11.7 25 4-28 28-52 (229)
349 cd03253 ABCC_ATM1_transporter 96.3 0.051 1.1E-06 49.3 11.4 50 77-126 148-198 (236)
350 cd03252 ABCC_Hemolysin The ABC 96.3 0.06 1.3E-06 48.9 11.8 50 77-126 149-199 (237)
351 TIGR00554 panK_bact pantothena 96.3 0.0094 2E-07 55.4 6.5 24 4-27 61-84 (290)
352 COG4618 ArpD ABC-type protease 96.3 0.049 1.1E-06 53.4 11.4 22 6-27 363-384 (580)
353 PRK00131 aroK shikimate kinase 96.3 0.0027 5.9E-08 54.6 2.8 24 4-27 3-26 (175)
354 cd03264 ABC_drug_resistance_li 96.3 0.037 8E-07 49.3 10.1 21 7-27 27-47 (211)
355 PRK14723 flhF flagellar biosyn 96.3 0.018 4E-07 60.2 9.1 24 5-28 185-208 (767)
356 PRK13543 cytochrome c biogenes 96.3 0.081 1.8E-06 47.2 12.3 24 5-28 37-60 (214)
357 PF00158 Sigma54_activat: Sigm 96.3 0.017 3.7E-07 49.3 7.5 112 5-124 22-144 (168)
358 PRK03839 putative kinase; Prov 96.3 0.0026 5.6E-08 55.1 2.5 21 7-27 2-22 (180)
359 cd01121 Sms Sms (bacterial rad 96.3 0.0072 1.6E-07 58.5 5.7 82 4-93 81-167 (372)
360 KOG1644 U2-associated snRNP A' 96.3 0.0088 1.9E-07 51.3 5.4 55 341-401 43-97 (233)
361 COG1117 PstB ABC-type phosphat 96.3 0.071 1.5E-06 46.4 10.8 25 3-27 31-55 (253)
362 PRK06731 flhF flagellar biosyn 96.3 0.06 1.3E-06 49.6 11.3 112 5-119 75-191 (270)
363 PRK10733 hflB ATP-dependent me 96.2 0.037 7.9E-07 58.0 11.1 23 5-27 185-207 (644)
364 TIGR01420 pilT_fam pilus retra 96.2 0.01 2.2E-07 57.1 6.5 107 5-122 122-228 (343)
365 PF13481 AAA_25: AAA domain; P 96.2 0.0036 7.9E-08 54.9 3.2 44 4-47 31-82 (193)
366 COG0396 sufC Cysteine desulfur 96.2 0.072 1.6E-06 46.9 10.9 54 75-128 153-208 (251)
367 PF03969 AFG1_ATPase: AFG1-lik 96.2 0.01 2.2E-07 57.2 6.4 106 4-124 61-167 (362)
368 COG1419 FlhF Flagellar GTP-bin 96.2 0.019 4.1E-07 55.0 8.0 104 4-111 202-310 (407)
369 TIGR03522 GldA_ABC_ATP gliding 96.2 0.056 1.2E-06 51.0 11.3 24 5-28 28-51 (301)
370 PF07726 AAA_3: ATPase family 96.2 0.0018 4E-08 51.6 1.0 28 8-37 2-29 (131)
371 TIGR01313 therm_gnt_kin carboh 96.2 0.022 4.8E-07 48.3 7.8 20 8-27 1-20 (163)
372 cd02028 UMPK_like Uridine mono 96.2 0.0037 8.1E-08 54.0 2.9 21 7-27 1-21 (179)
373 TIGR03771 anch_rpt_ABC anchore 96.2 0.07 1.5E-06 48.0 11.3 25 4-28 5-29 (223)
374 cd03236 ABC_RNaseL_inhibitor_d 96.2 0.05 1.1E-06 49.9 10.5 25 4-28 25-49 (255)
375 COG1223 Predicted ATPase (AAA+ 96.2 0.12 2.6E-06 46.4 12.0 25 4-28 150-174 (368)
376 TIGR03498 FliI_clade3 flagella 96.2 0.027 5.9E-07 55.1 9.0 86 5-93 140-239 (418)
377 PRK04301 radA DNA repair and r 96.2 0.0093 2E-07 56.8 5.8 57 3-60 100-160 (317)
378 TIGR02322 phosphon_PhnN phosph 96.2 0.0038 8.2E-08 54.1 2.8 23 6-28 2-24 (179)
379 cd02023 UMPK Uridine monophosp 96.1 0.0032 6.9E-08 55.5 2.4 21 7-27 1-21 (198)
380 PRK03846 adenylylsulfate kinas 96.1 0.0059 1.3E-07 53.8 4.1 25 3-27 22-46 (198)
381 PRK09270 nucleoside triphospha 96.1 0.015 3.3E-07 52.5 6.8 24 4-27 32-55 (229)
382 cd01135 V_A-ATPase_B V/A-type 96.1 0.033 7.3E-07 51.0 8.8 88 6-93 70-175 (276)
383 CHL00095 clpC Clp protease ATP 96.1 0.042 9.1E-07 59.4 11.1 24 5-28 200-223 (821)
384 KOG1514 Origin recognition com 96.1 0.11 2.4E-06 52.9 13.1 114 5-121 422-546 (767)
385 COG2274 SunT ABC-type bacterio 96.1 0.057 1.2E-06 56.7 11.6 24 4-27 498-521 (709)
386 PF00625 Guanylate_kin: Guanyl 96.1 0.0054 1.2E-07 53.3 3.6 36 5-42 2-37 (183)
387 TIGR03411 urea_trans_UrtD urea 96.1 0.086 1.9E-06 48.0 11.7 24 5-28 28-51 (242)
388 PRK11034 clpA ATP-dependent Cl 96.1 0.015 3.4E-07 61.4 7.5 92 6-109 489-582 (758)
389 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0046 1E-07 53.9 3.1 23 5-27 3-25 (188)
390 KOG0738 AAA+-type ATPase [Post 96.1 0.14 3E-06 48.7 12.7 33 6-45 246-278 (491)
391 cd00227 CPT Chloramphenicol (C 96.1 0.0046 1E-07 53.3 3.0 23 5-27 2-24 (175)
392 PRK12597 F0F1 ATP synthase sub 96.1 0.014 3.1E-07 57.6 6.7 88 5-93 143-246 (461)
393 PRK14269 phosphate ABC transpo 96.1 0.091 2E-06 48.0 11.7 23 5-27 28-50 (246)
394 cd00071 GMPK Guanosine monopho 96.1 0.0049 1.1E-07 50.7 3.0 21 7-27 1-21 (137)
395 PRK00279 adk adenylate kinase; 96.1 0.045 9.8E-07 48.9 9.5 21 7-27 2-22 (215)
396 cd02024 NRK1 Nicotinamide ribo 96.1 0.0042 9.1E-08 53.8 2.7 22 7-28 1-22 (187)
397 COG4136 ABC-type uncharacteriz 96.1 0.0072 1.6E-07 49.2 3.8 39 5-45 28-68 (213)
398 cd02029 PRK_like Phosphoribulo 96.1 0.011 2.4E-07 53.7 5.3 76 7-84 1-84 (277)
399 PRK00625 shikimate kinase; Pro 96.1 0.004 8.6E-08 53.4 2.4 21 7-27 2-22 (173)
400 KOG2739 Leucine-rich acidic nu 96.1 0.0043 9.3E-08 55.3 2.6 89 339-444 42-130 (260)
401 PRK10416 signal recognition pa 96.0 0.033 7.2E-07 52.7 8.8 24 4-27 113-136 (318)
402 COG1066 Sms Predicted ATP-depe 96.0 0.019 4.1E-07 54.8 6.9 82 4-94 92-178 (456)
403 COG1124 DppF ABC-type dipeptid 96.0 0.0085 1.8E-07 53.1 4.3 24 4-27 32-55 (252)
404 TIGR03263 guanyl_kin guanylate 96.0 0.0053 1.1E-07 53.2 3.1 22 6-27 2-23 (180)
405 PRK14249 phosphate ABC transpo 96.0 0.099 2.1E-06 47.9 11.7 24 5-28 30-53 (251)
406 TIGR00708 cobA cob(I)alamin ad 96.0 0.038 8.3E-07 46.9 8.1 116 5-124 5-140 (173)
407 TIGR02236 recomb_radA DNA repa 96.0 0.014 3E-07 55.5 6.2 57 3-60 93-153 (310)
408 PRK11823 DNA repair protein Ra 96.0 0.026 5.6E-07 56.2 8.3 84 3-94 78-166 (446)
409 PRK06995 flhF flagellar biosyn 96.0 0.027 5.8E-07 56.1 8.2 88 5-94 256-344 (484)
410 PTZ00088 adenylate kinase 1; P 96.0 0.0078 1.7E-07 54.1 4.1 20 8-27 9-28 (229)
411 TIGR00150 HI0065_YjeE ATPase, 96.0 0.006 1.3E-07 49.5 3.0 26 3-28 20-45 (133)
412 KOG0739 AAA+-type ATPase [Post 96.0 0.074 1.6E-06 48.5 10.1 24 5-28 166-189 (439)
413 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.097 2.1E-06 46.2 10.9 23 5-27 29-51 (204)
414 cd03250 ABCC_MRP_domain1 Domai 96.0 0.12 2.7E-06 45.6 11.8 25 4-28 30-54 (204)
415 PF08433 KTI12: Chromatin asso 96.0 0.013 2.9E-07 54.0 5.6 22 6-27 2-23 (270)
416 TIGR01425 SRP54_euk signal rec 96.0 0.064 1.4E-06 52.6 10.5 37 5-43 100-136 (429)
417 PF13504 LRR_7: Leucine rich r 96.0 0.0042 9.1E-08 30.6 1.3 17 430-447 1-17 (17)
418 COG1102 Cmk Cytidylate kinase 96.0 0.0042 9E-08 51.2 1.9 22 7-28 2-23 (179)
419 PRK14527 adenylate kinase; Pro 95.9 0.0068 1.5E-07 53.1 3.5 26 2-27 3-28 (191)
420 PRK13947 shikimate kinase; Pro 95.9 0.0046 1E-07 53.0 2.4 21 7-27 3-23 (171)
421 PRK08927 fliI flagellum-specif 95.9 0.034 7.4E-07 54.6 8.5 86 4-93 157-257 (442)
422 PF03796 DnaB_C: DnaB-like hel 95.9 0.039 8.5E-07 50.9 8.7 115 5-124 19-140 (259)
423 TIGR00416 sms DNA repair prote 95.9 0.038 8.2E-07 55.1 9.1 84 3-94 92-180 (454)
424 COG3640 CooC CO dehydrogenase 95.9 0.0096 2.1E-07 52.4 4.2 44 7-51 2-45 (255)
425 TIGR03346 chaperone_ClpB ATP-d 95.9 0.078 1.7E-06 57.5 12.2 24 5-28 194-217 (852)
426 PRK09580 sufC cysteine desulfu 95.9 0.093 2E-06 48.0 11.2 24 5-28 27-50 (248)
427 PRK08972 fliI flagellum-specif 95.9 0.029 6.3E-07 54.9 8.0 85 5-93 162-261 (444)
428 KOG2170 ATPase of the AAA+ sup 95.9 0.054 1.2E-06 49.6 9.0 88 5-109 110-203 (344)
429 cd02021 GntK Gluconate kinase 95.9 0.0054 1.2E-07 51.3 2.6 22 7-28 1-22 (150)
430 PF00006 ATP-synt_ab: ATP synt 95.9 0.042 9E-07 48.8 8.3 49 6-58 16-65 (215)
431 COG0003 ArsA Predicted ATPase 95.9 0.01 2.2E-07 55.9 4.7 46 5-52 2-47 (322)
432 PF12775 AAA_7: P-loop contain 95.9 0.0078 1.7E-07 55.7 3.8 80 5-97 33-113 (272)
433 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.11 2.4E-06 46.5 10.9 23 5-27 31-53 (222)
434 TIGR03575 selen_PSTK_euk L-ser 95.9 0.13 2.9E-06 48.9 12.0 21 7-27 1-21 (340)
435 COG4088 Predicted nucleotide k 95.9 0.1 2.3E-06 45.0 10.0 22 6-27 2-23 (261)
436 PLN02165 adenylate isopentenyl 95.9 0.0072 1.6E-07 56.9 3.4 28 1-28 39-66 (334)
437 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.0058 1.3E-07 53.1 2.7 21 7-27 1-21 (183)
438 PLN02348 phosphoribulokinase 95.8 0.026 5.5E-07 54.3 7.1 24 4-27 48-71 (395)
439 PRK05439 pantothenate kinase; 95.8 0.027 5.8E-07 52.9 7.0 24 4-27 85-108 (311)
440 PRK10078 ribose 1,5-bisphospho 95.8 0.0072 1.6E-07 52.7 3.1 23 6-28 3-25 (186)
441 PRK13545 tagH teichoic acids e 95.8 0.097 2.1E-06 52.6 11.2 24 5-28 50-73 (549)
442 KOG0729 26S proteasome regulat 95.8 0.021 4.6E-07 51.0 5.9 31 3-35 209-239 (435)
443 TIGR03496 FliI_clade1 flagella 95.8 0.036 7.8E-07 54.3 8.1 85 5-93 137-236 (411)
444 PF13479 AAA_24: AAA domain 95.8 0.04 8.7E-07 49.1 7.8 20 6-25 4-23 (213)
445 cd00984 DnaB_C DnaB helicase C 95.8 0.047 1E-06 49.7 8.5 52 4-58 12-63 (242)
446 PRK09280 F0F1 ATP synthase sub 95.8 0.05 1.1E-06 53.7 8.9 87 6-93 145-247 (463)
447 PF03205 MobB: Molybdopterin g 95.8 0.01 2.2E-07 49.0 3.6 38 6-45 1-39 (140)
448 PRK13949 shikimate kinase; Pro 95.8 0.007 1.5E-07 51.8 2.7 22 6-27 2-23 (169)
449 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0099 2.2E-07 46.1 3.3 22 5-26 15-36 (107)
450 PRK10751 molybdopterin-guanine 95.8 0.0089 1.9E-07 50.9 3.3 24 4-27 5-28 (173)
451 cd02020 CMPK Cytidine monophos 95.8 0.0072 1.6E-07 50.2 2.7 21 7-27 1-21 (147)
452 smart00534 MUTSac ATPase domai 95.7 0.0056 1.2E-07 53.3 2.0 21 7-27 1-21 (185)
453 PRK09099 type III secretion sy 95.7 0.04 8.8E-07 54.2 8.1 87 4-93 162-262 (441)
454 PRK11650 ugpC glycerol-3-phosp 95.7 0.06 1.3E-06 52.0 9.3 24 5-28 30-53 (356)
455 TIGR01287 nifH nitrogenase iro 95.7 0.01 2.2E-07 55.3 3.9 22 6-27 1-22 (275)
456 TIGR01041 ATP_syn_B_arch ATP s 95.7 0.03 6.4E-07 55.5 7.1 88 6-93 142-247 (458)
457 COG1936 Predicted nucleotide k 95.7 0.008 1.7E-07 50.3 2.7 20 7-26 2-21 (180)
458 PRK13946 shikimate kinase; Pro 95.7 0.0077 1.7E-07 52.4 2.8 23 5-27 10-32 (184)
459 TIGR00455 apsK adenylylsulfate 95.7 0.028 6E-07 48.9 6.3 25 3-27 16-40 (184)
460 PF10443 RNA12: RNA12 protein; 95.7 0.57 1.2E-05 45.6 15.4 102 85-186 149-288 (431)
461 PRK14737 gmk guanylate kinase; 95.7 0.011 2.3E-07 51.5 3.5 25 4-28 3-27 (186)
462 PRK12339 2-phosphoglycerate ki 95.7 0.0092 2E-07 52.3 3.1 24 5-28 3-26 (197)
463 PRK14264 phosphate ABC transpo 95.7 0.13 2.9E-06 48.6 11.2 24 5-28 71-94 (305)
464 PRK11160 cysteine/glutathione 95.7 0.13 2.9E-06 53.3 12.2 25 4-28 365-389 (574)
465 TIGR01069 mutS2 MutS2 family p 95.7 0.061 1.3E-06 57.3 9.7 23 5-27 322-344 (771)
466 smart00763 AAA_PrkA PrkA AAA d 95.7 0.0087 1.9E-07 56.9 3.1 26 3-28 76-101 (361)
467 TIGR02902 spore_lonB ATP-depen 95.7 0.07 1.5E-06 54.5 9.8 23 5-27 86-108 (531)
468 cd03243 ABC_MutS_homologs The 95.6 0.1 2.2E-06 46.1 9.7 22 6-27 30-51 (202)
469 TIGR01193 bacteriocin_ABC ABC- 95.6 0.085 1.8E-06 56.3 10.9 24 4-27 499-522 (708)
470 PRK08356 hypothetical protein; 95.6 0.011 2.4E-07 51.9 3.6 26 1-26 1-26 (195)
471 cd01136 ATPase_flagellum-secre 95.6 0.069 1.5E-06 50.5 9.0 85 5-93 69-168 (326)
472 PRK15064 ABC transporter ATP-b 95.6 0.15 3.3E-06 52.4 12.3 24 5-28 27-50 (530)
473 PRK05922 type III secretion sy 95.6 0.062 1.3E-06 52.8 8.8 85 5-93 157-256 (434)
474 TIGR03375 type_I_sec_LssB type 95.6 0.13 2.9E-06 54.7 12.3 24 4-27 490-513 (694)
475 cd01134 V_A-ATPase_A V/A-type 95.6 0.06 1.3E-06 50.9 8.3 48 5-56 157-205 (369)
476 PRK06793 fliI flagellum-specif 95.6 0.049 1.1E-06 53.5 8.1 87 5-94 156-256 (432)
477 PF02374 ArsA_ATPase: Anion-tr 95.6 0.014 3E-07 55.0 4.3 41 6-48 2-42 (305)
478 PRK14738 gmk guanylate kinase; 95.6 0.011 2.4E-07 52.4 3.4 24 4-27 12-35 (206)
479 PRK03731 aroL shikimate kinase 95.6 0.0085 1.8E-07 51.4 2.6 22 6-27 3-24 (171)
480 PRK08149 ATP synthase SpaL; Va 95.6 0.078 1.7E-06 52.0 9.5 85 5-93 151-250 (428)
481 PHA02774 E1; Provisional 95.6 0.039 8.4E-07 55.6 7.4 37 3-43 432-468 (613)
482 cd01132 F1_ATPase_alpha F1 ATP 95.6 0.047 1E-06 50.0 7.4 49 6-58 70-121 (274)
483 cd04106 Rab23_lke Rab23-like s 95.6 0.3 6.5E-06 41.0 12.2 21 8-28 3-23 (162)
484 PRK07721 fliI flagellum-specif 95.6 0.034 7.4E-07 54.9 7.0 47 4-53 157-203 (438)
485 cd04159 Arl10_like Arl10-like 95.6 0.064 1.4E-06 44.7 7.9 21 8-28 2-22 (159)
486 PF06414 Zeta_toxin: Zeta toxi 95.6 0.029 6.3E-07 49.5 5.9 103 4-112 14-119 (199)
487 cd02117 NifH_like This family 95.6 0.0099 2.1E-07 53.0 3.0 22 6-27 1-22 (212)
488 PRK05986 cob(I)alamin adenolsy 95.5 0.062 1.3E-06 46.4 7.6 117 5-124 22-158 (191)
489 PRK10875 recD exonuclease V su 95.5 0.065 1.4E-06 55.4 9.2 113 4-121 166-299 (615)
490 PRK13657 cyclic beta-1,2-gluca 95.5 0.16 3.4E-06 53.0 12.2 24 4-27 360-383 (588)
491 KOG0736 Peroxisome assembly fa 95.5 0.035 7.7E-07 57.0 6.9 71 5-95 705-775 (953)
492 TIGR02655 circ_KaiC circadian 95.5 0.038 8.3E-07 55.8 7.3 42 3-46 261-302 (484)
493 PRK14530 adenylate kinase; Pro 95.5 0.011 2.4E-07 52.8 3.1 22 6-27 4-25 (215)
494 COG2401 ABC-type ATPase fused 95.5 0.02 4.4E-07 54.6 4.8 25 4-28 408-432 (593)
495 PRK13409 putative ATPase RIL; 95.5 0.12 2.6E-06 53.6 11.0 124 5-128 365-518 (590)
496 COG2019 AdkA Archaeal adenylat 95.5 0.014 3E-07 48.5 3.3 23 5-27 4-26 (189)
497 KOG0734 AAA+-type ATPase conta 95.5 0.098 2.1E-06 51.6 9.5 24 5-28 337-360 (752)
498 cd01672 TMPK Thymidine monopho 95.5 0.025 5.4E-07 49.7 5.3 22 6-27 1-22 (200)
499 KOG2123 Uncharacterized conser 95.5 0.00058 1.3E-08 61.2 -5.1 97 339-457 18-123 (388)
500 PRK15429 formate hydrogenlyase 95.5 0.067 1.4E-06 56.8 9.3 111 5-123 399-520 (686)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-55 Score=455.21 Aligned_cols=441 Identities=27% Similarity=0.425 Sum_probs=325.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcc-cccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCC--ccCHHHHHHHHHhh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDET-VKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFS--KHDLNKLQEVHHQK 80 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 80 (459)
...+|+|+||||+||||||++++|+.. ++++|+.++||.||+.++...++++|++.++..+.. ....++.+..+.+.
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 347999999999999999999999977 999999999999999999999999999999864332 22346888999999
Q ss_pred cCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc------------cCChhhhHHHHHHHHccCCC
Q 040680 81 IDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR------------GLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 81 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~------------~l~~~ea~~Lf~~~~~~~~~ 148 (459)
|+++|++||+||||+. .+|+.+..++|....||+|++|||++.++. .|+.+|||+||.+.+|....
T Consensus 258 L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred hccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 9999999999999997 779999999999999999999999999987 79999999999999987754
Q ss_pred CCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhhc----CCchhhHHHHhhccCchhHHH
Q 040680 149 EPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQE----GNHILPILELSYNHIPSHLHQ 224 (459)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~----~~~i~~~l~~s~~~L~~~~k~ 224 (459)
..++.++++|++++++|+|+|||+.++|+.++.+.+..+|+.+.+...+.+..+ .+.++.++.+||+.||.++|.
T Consensus 336 -~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~ 414 (889)
T KOG4658|consen 336 -GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKS 414 (889)
T ss_pred -cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHH
Confidence 334559999999999999999999999999999999999999988765553322 358999999999999999999
Q ss_pred HHhhhhccccccc---------------------------------------------CCCCCEEEEEechhHHHHhhhh
Q 040680 225 CFSYCVLFQDVIY---------------------------------------------DGDGNIVKCKIHDLVHDLAGSV 259 (459)
Q Consensus 225 ~f~~l~~~~~~~~---------------------------------------------~~~~~~~~~~~hdLv~~~~~~~ 259 (459)
||+|||.|+.-.. ...++...|.|||++|++|.++
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWI 494 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHH
Confidence 9999999553110 0003557899999999999999
Q ss_pred hc-----ccc------------------------------------------------------cccCcc-ccCCCccce
Q 040680 260 SR-----TEW------------------------------------------------------IEIVPS-SISKLKHLW 279 (459)
Q Consensus 260 ~~-----~~~------------------------------------------------------~~~lp~-~~~~l~~L~ 279 (459)
+. .+. +..++. .|..++.|+
T Consensus 495 as~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 495 ASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR 574 (889)
T ss_pred hccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceE
Confidence 98 332 001111 166799999
Q ss_pred EeecCCCC-ccccCcccccccCCCeeccCCCccccccccccccCC------CCCcch-HHHhhccCCCCCcceEeeeeec
Q 040680 280 YLNLPGNG-ITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG------HTDVDV-EALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 280 ~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~------~~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+||+++|. +.++|.+|++|-+||+|+++++. +.++|.++.++. +..... ..++.....|++||+|.+....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999774 78999999999999999999965 889999886553 222222 2334445558889988887652
Q ss_pred --ccccCCCCCCCCCCCcEEecCCCcC--cc-------------eec------cccCcCCCCCCCcCEEeecCCCCCCcc
Q 040680 352 --VRCQYIPQLEQLPSLKSLTLSWLDA--LV-------------YIC------FSSIASRTRFSSLEYISILGCPELKGW 408 (459)
Q Consensus 352 --~~~~~l~~l~~l~~L~~L~l~~~~~--l~-------------~~~------~~~~~~~~~l~~L~~L~L~~~~~l~~~ 408 (459)
.....+..+.+|.+|+.|....... +. .+. .........+.+|+.|.+.+|......
T Consensus 654 ~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 654 LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence 1111222345555555555543221 00 000 001122236778888888887553211
Q ss_pred ccc---------ccc-----CCC-CCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 409 LRR---------IDN-----DAD-GSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 409 ~~~---------~~~-----~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
... +.+ ... ...-+..+....|+|+.|.+.+|+.++.+.+
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 100 000 000 0111111223567888888888887776555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.1e-48 Score=422.43 Aligned_cols=384 Identities=17% Similarity=0.254 Sum_probs=256.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe---CCcc-----------c-HHHHHHHHHHHhcccc-CC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI---SDIF-----------Y-HKAMLEKIIAFVAYRE-FS 66 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~-~~ 66 (459)
+..++|+|+||||+||||||+++|+ ++..+|++.+|+.. +... . ...++.+++..+.... ..
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~ 282 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK 282 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc
Confidence 3468999999999999999999999 78889998888752 1110 0 1233445555543221 11
Q ss_pred ccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-----------cCChhhh
Q 040680 67 KHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-----------GLSKGQS 135 (459)
Q Consensus 67 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-----------~l~~~ea 135 (459)
... ...+++.++++|+||||||||+. ..|+.+.....++++|++||||||++.++. .++.+||
T Consensus 283 ~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea 356 (1153)
T PLN03210 283 IYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELA 356 (1153)
T ss_pred cCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHH
Confidence 111 14567778999999999999875 678888777777789999999999998764 7899999
Q ss_pred HHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhhcCCchhhHHHHhh
Q 040680 136 WSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQEGNHILPILELSY 215 (459)
Q Consensus 136 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~s~ 215 (459)
++||+++||+...+ ...+.+++++|+++|+|+|||++++|++|+.+. ..+|+.++++..... ...+..+|++||
T Consensus 357 ~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~-~~~W~~~l~~L~~~~---~~~I~~~L~~SY 430 (1153)
T PLN03210 357 LEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGRD-KEDWMDMLPRLRNGL---DGKIEKTLRVSY 430 (1153)
T ss_pred HHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC-HHHHHHHHHHHHhCc---cHHHHHHHHHhh
Confidence 99999999987543 356889999999999999999999999999764 789998887754322 236999999999
Q ss_pred ccCch-hHHHHHhhhhccccccc----------CCC----------------CCEEEEEechhHHHHhhhhhcccc----
Q 040680 216 NHIPS-HLHQCFSYCVLFQDVIY----------DGD----------------GNIVKCKIHDLVHDLAGSVSRTEW---- 264 (459)
Q Consensus 216 ~~L~~-~~k~~f~~l~~~~~~~~----------~~~----------------~~~~~~~~hdLv~~~~~~~~~~~~---- 264 (459)
+.|++ ..|.+|.++|.|..... ... .....+.|||++|+++++++.++.
T Consensus 431 d~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~ 510 (1153)
T PLN03210 431 DGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPG 510 (1153)
T ss_pred hccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCC
Confidence 99987 58999999987432100 000 001358999999999999875431
Q ss_pred ------------------------------------c------------------------------ccCccccCCC-cc
Q 040680 265 ------------------------------------I------------------------------EIVPSSISKL-KH 277 (459)
Q Consensus 265 ------------------------------------~------------------------------~~lp~~~~~l-~~ 277 (459)
. ..+|..+..+ .+
T Consensus 511 ~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~ 590 (1153)
T PLN03210 511 EREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPK 590 (1153)
T ss_pred cceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcc
Confidence 0 0112222222 12
Q ss_pred ceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---CCCcc----hHHHhhccCCCCCcceEeeeee
Q 040680 278 LWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---HTDVD----VEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 278 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---~~~~~----~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
|++|++.++.+..+|..+ .+.+|+.|++++|. +..+|.++..+. +.... ...+| .++.+++|++|++++|
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCC
Confidence 444444444444555444 34566666666643 555555442221 11111 01222 3556677777777776
Q ss_pred cccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc
Q 040680 351 GVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL 409 (459)
Q Consensus 351 ~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 409 (459)
. ....+|. ++.+++|+.|++++|..++.+|... .+++|+.|+|++|..++.+|
T Consensus 668 ~-~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-----~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 668 S-SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred C-CccccchhhhccCCCCEEeCCCCCCcCccCCcC-----CCCCCCEEeCCCCCCccccc
Confidence 2 2333443 6777777777777777776666533 46667777777766555544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-37 Score=291.66 Aligned_cols=231 Identities=31% Similarity=0.507 Sum_probs=187.2
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccC---CccCHHHHHHHHHh
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF---SKHDLNKLQEVHHQ 79 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 79 (459)
+..++|+|+||||+||||||++++++..++.+|++++|++++...+...++.+|++++..... ...+.+.....+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 568999999999999999999999966699999999999999998889999999999987642 45678889999999
Q ss_pred hcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc------------cCChhhhHHHHHHHHccCC
Q 040680 80 KIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR------------GLSKGQSWSLFILMAFEQG 147 (459)
Q Consensus 80 ~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~------------~l~~~ea~~Lf~~~~~~~~ 147 (459)
.++++++||||||||+. ..|+.+...++....|++||||||+..++. +|+.+||++||.+.++...
T Consensus 97 ~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp HHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred hhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999876 678888888887788999999999987764 8999999999999998665
Q ss_pred CCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhh---cCCchhhHHHHhhccCchhHHH
Q 040680 148 VEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQ---EGNHILPILELSYNHIPSHLHQ 224 (459)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~~~i~~~l~~s~~~L~~~~k~ 224 (459)
....+..++.+++|++.|+|+|||++++|++++.+.+..+|+.+.++....... ....+..++.+||+.|++..|+
T Consensus 175 -~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 253 (287)
T PF00931_consen 175 -SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRR 253 (287)
T ss_dssp -----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHH
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHH
Confidence 223455677899999999999999999999997777788999988775555432 2357999999999999999999
Q ss_pred HHhhhhcccccc
Q 040680 225 CFSYCVLFQDVI 236 (459)
Q Consensus 225 ~f~~l~~~~~~~ 236 (459)
||.+|++|+...
T Consensus 254 ~f~~L~~f~~~~ 265 (287)
T PF00931_consen 254 CFLYLSIFPEGV 265 (287)
T ss_dssp HHHHGGGSGTTS
T ss_pred HHhhCcCCCCCc
Confidence 999999988653
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.9e-15 Score=123.28 Aligned_cols=145 Identities=28% Similarity=0.416 Sum_probs=124.0
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+...|+++..+.+|+.|++++|.|+++|.+|+.+++|+.|++.-|. +..+|. +|+.++-|+.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lpr-----------------gfgs~p~lev 106 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPR-----------------GFGSFPALEV 106 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCcc-----------------ccCCCchhhh
Confidence 5567889999999999999999999999999999999999988644 666765 5677799999
Q ss_pred EeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCC
Q 040680 345 LSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDM 423 (459)
Q Consensus 345 L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 423 (459)
|++.+|..+...+|. |-.+..|+.|.++.+ ..+.+|.+. + .+++|+.|.+.. +.+-++|.+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dv-g---~lt~lqil~lrd-ndll~lpkeig---------- 170 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDV-G---KLTNLQILSLRD-NDLLSLPKEIG---------- 170 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhh-h---hhcceeEEeecc-CchhhCcHHHH----------
Confidence 999999777788886 778889999999984 577787765 3 899999999999 57889999988
Q ss_pred CCCCCCCccceeeecCCCCCCCCCC
Q 040680 424 IEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 424 ~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.++.|++|.|.++ +++-+|.
T Consensus 171 ----~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 171 ----DLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred ----HHHHHHHHhcccc-eeeecCh
Confidence 8999999999999 7888887
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=1.7e-11 Score=133.91 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=150.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccccCC-------------ccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYREFS-------------KHD 69 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-------------~~~ 69 (459)
..+++.|+|++|.||||++.++..+ ++.++|+++... .+...+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 4689999999999999999998862 226899998644 45566667777776421111 122
Q ss_pred HHHHHHHHHhhcC--CceEEEEEeCCCCCChhhH-HHHHHhhccCCCCcEEEEeecchhhh---c---------------
Q 040680 70 LNKLQEVHHQKID--RKKYLLVLDDVWIENCDEW-LKLETLLRNSAGGSNIIVATRSERVA---R--------------- 128 (459)
Q Consensus 70 ~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~-~~l~~~l~~~~~gs~iiiTtr~~~~~---~--------------- 128 (459)
.......+...+. +.+++||+||+...+.... +.+...+.....+.++|||||...-. .
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2333333333333 5789999999976543333 34555555566778999999984211 0
Q ss_pred cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhh-cCCch
Q 040680 129 GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQ-EGNHI 207 (459)
Q Consensus 129 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-~~~~i 207 (459)
+|+.+|+.++|....+..- -.+.+..+++.++|.|+++..++..++...... ......+.. ....+
T Consensus 185 ~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 251 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQNNSSL------HDSARRLAGINASHL 251 (903)
T ss_pred CCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch------hhhhHhhcCCCchhH
Confidence 7999999999976653221 234578899999999999999887775443110 000111111 11234
Q ss_pred hhHHHH-hhccCchhHHHHHhhhhcccccc---------------------------cCCCCCEEEEEechhHHHHhhhh
Q 040680 208 LPILEL-SYNHIPSHLHQCFSYCVLFQDVI---------------------------YDGDGNIVKCKIHDLVHDLAGSV 259 (459)
Q Consensus 208 ~~~l~~-s~~~L~~~~k~~f~~l~~~~~~~---------------------------~~~~~~~~~~~~hdLv~~~~~~~ 259 (459)
...+.- -+..||+..++++...+++.... ....+...+|.+|++++++.+..
T Consensus 252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~ 331 (903)
T PRK04841 252 SDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHR 331 (903)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHH
Confidence 444333 36789999999888888733210 00111223688999999999876
Q ss_pred h
Q 040680 260 S 260 (459)
Q Consensus 260 ~ 260 (459)
.
T Consensus 332 l 332 (903)
T PRK04841 332 C 332 (903)
T ss_pred H
Confidence 4
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=8.1e-13 Score=146.02 Aligned_cols=112 Identities=23% Similarity=0.313 Sum_probs=80.5
Q ss_pred CCcceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc----
Q 040680 340 KNLRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN---- 414 (459)
Q Consensus 340 ~~L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~---- 414 (459)
++|+.|++++|. ....+|. ++++++|+.|++++|..++.+|... .+++|+.|+|++|.++..+|....+
T Consensus 778 ~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 778 PSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred ccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCccccccccccccCEe
Confidence 356666666662 2333554 8889999999999999898887644 6889999999999888877654322
Q ss_pred CCCCCCcCCCCC--CCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 415 DADGSKIDMIEP--PSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 415 ~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
...++.++.+|. ..+++|+.|++++|++++.+|. +++|+ .|.+
T Consensus 852 ~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~-~L~l 900 (1153)
T PLN03210 852 NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE-TVDF 900 (1153)
T ss_pred ECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC-eeec
Confidence 123445555554 3689999999999999999987 55565 5543
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.41 E-value=1.4e-13 Score=151.18 Aligned_cols=187 Identities=19% Similarity=0.139 Sum_probs=103.2
Q ss_pred cCccccCCCccceEeecCCCCcc-ccCcccccccCCCeeccCCCccccccccccccCCCC---Ccc----hHHHhhccCC
Q 040680 267 IVPSSISKLKHLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHT---DVD----VEALLDDLKP 338 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~---~~~----~~~~~~~l~~ 338 (459)
.+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|..+..+.-. ... ...+|..++.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 46666777777777777777764 567777777777777777766555666655443211 111 1245556667
Q ss_pred CCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccC---
Q 040680 339 HKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDND--- 415 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--- 415 (459)
+++|++|++++|.........++++++|++|++++|.-...+|... . .+++|+.|+|++|.-...+|..+...
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~---~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-F---SLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-h---hccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 7777777777663222222236677777777776654333333322 1 45566666666553223333322200
Q ss_pred ----CCCCCcC-CCCC--CCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 416 ----ADGSKID-MIEP--PSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 416 ----~~~~~~~-~~~~--~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
..+..+. .++. ..+++|+.|++++|...+.+|. +++|+ .|.+
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~-~L~L 363 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT-VLDL 363 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc-EEEC
Confidence 0000010 0110 1577788888888765556675 56666 6654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=3.2e-14 Score=130.80 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=117.9
Q ss_pred cCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC-----------------------
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG----------------------- 323 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~----------------------- 323 (459)
++|+.++.+.+|+.|+.++|.+.++|++|+.+..|+.|+..+|+ +..+|.++..|.
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~ 183 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMK 183 (565)
T ss_pred hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHH
Confidence 44555555555555555555555555555555555555544432 444444432221
Q ss_pred ---CCC---cchHHHhhccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEE
Q 040680 324 ---HTD---VDVEALLDDLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYI 397 (459)
Q Consensus 324 ---~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 397 (459)
..+ ...+.+|+.++.+.+|..|++..| ....+|+|+++..|++|+++. +.++.+|.+... .+++|..|
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N--ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~---~L~~l~vL 257 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRN--KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLK---HLNSLLVL 257 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhhhc--ccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhc---ccccceee
Confidence 111 112778999999999999999998 778899999999999999987 467778776654 88999999
Q ss_pred eecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-CC--CCccceee
Q 040680 398 SILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-YP--YLETDWRI 458 (459)
Q Consensus 398 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-l~--~L~~~L~i 458 (459)
+|+. +++++.|+++. .+.+|.+||+|++ .+..+|. +. +|+ .|.+
T Consensus 258 DLRd-Nklke~Pde~c--------------lLrsL~rLDlSNN-~is~Lp~sLgnlhL~-~L~l 304 (565)
T KOG0472|consen 258 DLRD-NKLKEVPDEIC--------------LLRSLERLDLSNN-DISSLPYSLGNLHLK-FLAL 304 (565)
T ss_pred eccc-cccccCchHHH--------------HhhhhhhhcccCC-ccccCCcccccceee-ehhh
Confidence 9999 68999999987 7889999999999 7888997 44 455 5544
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.33 E-value=2.5e-12 Score=141.38 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=106.5
Q ss_pred ccCccccCCCccceEeecCCCCcc-ccCcccccccCCCeeccCCCccccccccccccCCCCC---cc---h-HHHhhccC
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTD---VD---V-EALLDDLK 337 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~~---~-~~~~~~l~ 337 (459)
..+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+..+.-.. .. . ..+|..+.
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 345666667777777777776665 5666677777777777776654455665554432111 00 0 23455566
Q ss_pred CCCCcceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCC
Q 040680 338 PHKNLRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDA 416 (459)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 416 (459)
.+++|++|++++|.... .+|. ++++++|+.|+++++.....++... . .+++|+.|+|++|.-...+|....
T Consensus 282 ~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~---~l~~L~~L~L~~n~l~~~~p~~l~--- 353 (968)
T PLN00113 282 SLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVAL-T---SLPRLQVLQLWSNKFSGEIPKNLG--- 353 (968)
T ss_pred hccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhH-h---cCCCCCEEECcCCCCcCcCChHHh---
Confidence 66677777776662222 2333 6667777777776654333333222 2 677788888887654445665555
Q ss_pred CCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 417 DGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.+++|+.|++++|.....+|. +++|+ .|.+
T Consensus 354 -----------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~-~L~l 387 (968)
T PLN00113 354 -----------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLF-KLIL 387 (968)
T ss_pred -----------CCCCCcEEECCCCeeEeeCChhHhCcCCCC-EEEC
Confidence 789999999999976667786 56677 7654
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=5e-14 Score=115.03 Aligned_cols=147 Identities=19% Similarity=0.297 Sum_probs=122.8
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+..+.++..|-+|+|.++.+|+.|..|.+|+.|++.+|+ +.++|.+ ++.++.|+.|++..|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~-----------------issl~klr~lnvgmn- 89 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTS-----------------ISSLPKLRILNVGMN- 89 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChh-----------------hhhchhhhheecchh-
Confidence 456777788899999999999999999999999999865 8888865 456689999999988
Q ss_pred ccccCCCC-CCCCCCCcEEecCCCcC-cceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCC
Q 040680 352 VRCQYIPQ-LEQLPSLKSLTLSWLDA-LVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSF 429 (459)
Q Consensus 352 ~~~~~l~~-l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 429 (459)
+...+|. ||.+|.|+.|++..++- -.++|..+| .+..|+.|.|++ +.++-+|...+ .+
T Consensus 90 -rl~~lprgfgs~p~levldltynnl~e~~lpgnff----~m~tlralyl~d-ndfe~lp~dvg--------------~l 149 (264)
T KOG0617|consen 90 -RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF----YMTTLRALYLGD-NDFEILPPDVG--------------KL 149 (264)
T ss_pred -hhhcCccccCCCchhhhhhccccccccccCCcchh----HHHHHHHHHhcC-CCcccCChhhh--------------hh
Confidence 6777886 99999999999997542 235666655 677899999998 57888998888 89
Q ss_pred CccceeeecCCCCCCCCCC----CCCCccceeeC
Q 040680 430 PCLSELDISGCPKLILIPL----YPYLETDWRIP 459 (459)
Q Consensus 430 ~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i~ 459 (459)
++|+.|.+..+ .+-++|. +..|+ .|+|+
T Consensus 150 t~lqil~lrdn-dll~lpkeig~lt~lr-elhiq 181 (264)
T KOG0617|consen 150 TNLQILSLRDN-DLLSLPKEIGDLTRLR-ELHIQ 181 (264)
T ss_pred cceeEEeeccC-chhhCcHHHHHHHHHH-HHhcc
Confidence 99999999999 7888997 77777 77764
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=5.4e-10 Score=104.11 Aligned_cols=172 Identities=16% Similarity=0.067 Sum_probs=108.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHH----h-
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHH----Q- 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~- 79 (459)
..++.|+|++|+||||+++.+++.... ..+ .++|+. ....+..+++..++..++..... .+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 458999999999999999999984221 111 223432 23346678888888888654322 22222222222 2
Q ss_pred hcCCceEEEEEeCCCCCChhhHHHHHHhhccC---CCCcEEEEeecchhh--------------------hccCChhhhH
Q 040680 80 KIDRKKYLLVLDDVWIENCDEWLKLETLLRNS---AGGSNIIVATRSERV--------------------ARGLSKGQSW 136 (459)
Q Consensus 80 ~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~---~~gs~iiiTtr~~~~--------------------~~~l~~~ea~ 136 (459)
...+++.++|+|+++..+...++.+....... .....|++|...... ..+++.+|..
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 23577899999999887666666665433221 122344555542210 1189999999
Q ss_pred HHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 040680 137 SLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL 180 (459)
Q Consensus 137 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 180 (459)
+++...+...+......-.++..+.|++.++|.|..+..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987765333211112234678899999999999998888766
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.20 E-value=1.2e-12 Score=126.81 Aligned_cols=160 Identities=23% Similarity=0.261 Sum_probs=87.2
Q ss_pred cCccccCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCccccccccccccCCCCC------cch-HHHhhccCC
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCRSLAELPRILEGCGHTD------VDV-EALLDDLKP 338 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~------~~~-~~~~~~l~~ 338 (459)
+.|.++..-+++-.|+||+|+|+.+|.+ +-+|+-|-+|||++|. +..+|..+..+.... .+. ---+..+..
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 3556666666667777777777777664 4566667777777643 666666553332111 000 001222333
Q ss_pred CCCcceEeeeeecccccCC-CCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCC
Q 040680 339 HKNLRELSIFYFGVRCQYI-PQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDAD 417 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 417 (459)
+++|+.|.+++.......+ +++..|.||..++++. +++..+|.-.+ .+++|+.|+|++ ++++++....+
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly----~l~~LrrLNLS~-N~iteL~~~~~---- 265 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLY----KLRNLRRLNLSG-NKITELNMTEG---- 265 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHh----hhhhhheeccCc-CceeeeeccHH----
Confidence 4444444444441122222 3466666777777764 45666665443 566777777777 45666554444
Q ss_pred CCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 418 GSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
...+|+.|++|.| .|+.+|.
T Consensus 266 ----------~W~~lEtLNlSrN-QLt~LP~ 285 (1255)
T KOG0444|consen 266 ----------EWENLETLNLSRN-QLTVLPD 285 (1255)
T ss_pred ----------HHhhhhhhccccc-hhccchH
Confidence 4556666666666 4666665
No 13
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=2.6e-09 Score=108.08 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=157.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccC-------------CccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREF-------------SKHD 69 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------------~~~~ 69 (459)
-.|++.|..++|.|||||+.+.+. ... .-..+.|.+..... +...+...++..++.-.+ ...+
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~ 112 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVS 112 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccccc
Confidence 468999999999999999999975 222 22468999977654 677888888888763221 1233
Q ss_pred HHHHHHHHHhhcC--CceEEEEEeCCCCCChhh-HHHHHHhhccCCCCcEEEEeecchhhhc------------------
Q 040680 70 LNKLQEVHHQKID--RKKYLLVLDDVWIENCDE-WLKLETLLRNSAGGSNIIVATRSERVAR------------------ 128 (459)
Q Consensus 70 ~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~-~~~l~~~l~~~~~gs~iiiTtr~~~~~~------------------ 128 (459)
...+...+...+. .+++.+|+||........ -..+...+.....+-..|+|||.+--..
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~L 192 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEEL 192 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhh
Confidence 3444444444443 368999999986543233 3445666666778999999999864332
Q ss_pred cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhhcCCchh
Q 040680 129 GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQEGNHIL 208 (459)
Q Consensus 129 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~ 208 (459)
.|+.+|+.++|.......- .+.-++.+.+..+|.+-|+..++-.++.+.+.+.-...+......+.+.
T Consensus 193 rf~~eE~~~fl~~~~~l~L-------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dY----- 260 (894)
T COG2909 193 RFDTEEAAAFLNDRGSLPL-------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDY----- 260 (894)
T ss_pred cCChHHHHHHHHHcCCCCC-------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHH-----
Confidence 7999999999987642211 2234789999999999999999999884444333222222111111111
Q ss_pred hHHHHhhccCchhHHHHHhhhhcccc-----------------------------cccCCCCCEEEEEechhHHHHhhhh
Q 040680 209 PILELSYNHIPSHLHQCFSYCVLFQD-----------------------------VIYDGDGNIVKCKIHDLVHDLAGSV 259 (459)
Q Consensus 209 ~~l~~s~~~L~~~~k~~f~~l~~~~~-----------------------------~~~~~~~~~~~~~~hdLv~~~~~~~ 259 (459)
..+--++.+|++++.....++++.. ...+ +...+|+.|.++.+|.+.-
T Consensus 261 -L~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ld--d~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 261 -LVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLD--DEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred -HHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeec--CCCceeehhHHHHHHHHhh
Confidence 1122356788888888777777221 1111 2235799999999998866
Q ss_pred hcc
Q 040680 260 SRT 262 (459)
Q Consensus 260 ~~~ 262 (459)
...
T Consensus 338 ~~~ 340 (894)
T COG2909 338 LQR 340 (894)
T ss_pred hcc
Confidence 544
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.16 E-value=6.4e-12 Score=121.03 Aligned_cols=213 Identities=23% Similarity=0.234 Sum_probs=114.3
Q ss_pred hhHHHHhhccCchhHHHHHhhhhcccccccCCC--------CC-EEEEEechhHHHHhhhhhcccc--------------
Q 040680 208 LPILELSYNHIPSHLHQCFSYCVLFQDVIYDGD--------GN-IVKCKIHDLVHDLAGSVSRTEW-------------- 264 (459)
Q Consensus 208 ~~~l~~s~~~L~~~~k~~f~~l~~~~~~~~~~~--------~~-~~~~~~hdLv~~~~~~~~~~~~-------------- 264 (459)
-.++++|++.|..-.-..|..+--++.+....+ +. .....-.+|.|..+..+..++-
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 345778888887766666666655554433222 11 1223445566666655555443
Q ss_pred -cccCc-cccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCC
Q 040680 265 -IEIVP-SSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKN 341 (459)
Q Consensus 265 -~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~ 341 (459)
+.++| .+|..-.++++|+|++|.|+.+-. .|.++.+|.+|.|+.|. +..+|.- .|++|++
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r----------------~Fk~L~~ 222 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQR----------------SFKRLPK 222 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHH----------------Hhhhcch
Confidence 22232 234445667888888888776643 57777788888888754 6777643 3344444
Q ss_pred cceEeeeeecccccCCCCCCCCC------------------------CCcEEecCCCcCcceeccccCcCCCCCCCcCEE
Q 040680 342 LRELSIFYFGVRCQYIPQLEQLP------------------------SLKSLTLSWLDALVYICFSSIASRTRFSSLEYI 397 (459)
Q Consensus 342 L~~L~l~~~~~~~~~l~~l~~l~------------------------~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 397 (459)
|+.|++..|..+....-.|.+|+ ++++|+|+. +++..+-....- .+++|+.|
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lf---gLt~L~~L 298 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLF---GLTSLEQL 298 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccccc---ccchhhhh
Confidence 44444444422222222233444 444444443 223222221111 55666666
Q ss_pred eecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCcccee
Q 040680 398 SILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWR 457 (459)
Q Consensus 398 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~ 457 (459)
+|++ +.+..+...... ..++|++|+|++| .++++|+ |..|+ .|.
T Consensus 299 ~lS~-NaI~rih~d~Ws-------------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le-~Ln 347 (873)
T KOG4194|consen 299 DLSY-NAIQRIHIDSWS-------------FTQKLKELDLSSN-RITRLDEGSFRVLSQLE-ELN 347 (873)
T ss_pred ccch-hhhheeecchhh-------------hcccceeEecccc-ccccCChhHHHHHHHhh-hhc
Confidence 6665 344444433331 5567888888777 6777776 55555 554
No 15
>PF05729 NACHT: NACHT domain
Probab=99.15 E-value=2.8e-10 Score=97.63 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=81.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccC----CCeEEEEEeCCcccHH---HHHHHHHHHhccccCCccCHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNH----FDLRIWMCISDIFYHK---AMLEKIIAFVAYREFSKHDLNKLQEVHH 78 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 78 (459)
|++.|+|.+|+||||+++.++.+-..... +..++|++........ .+...+..+.... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---IAPIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc---hhhhHHHHHHH-
Confidence 68999999999999999999974222222 4567777766554332 3333444433211 11111111111
Q ss_pred hhcCCceEEEEEeCCCCCChhh-------HH-HHHHhhcc-CCCCcEEEEeecchhhhc--------------cCChhhh
Q 040680 79 QKIDRKKYLLVLDDVWIENCDE-------WL-KLETLLRN-SAGGSNIIVATRSERVAR--------------GLSKGQS 135 (459)
Q Consensus 79 ~~l~~~~~LlvlDdv~~~~~~~-------~~-~l~~~l~~-~~~gs~iiiTtr~~~~~~--------------~l~~~ea 135 (459)
.-+.++++||+|++++..... +. .+...+.. ..++++++||+|...... +|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 124689999999997643211 11 23334443 357899999999876622 7888888
Q ss_pred HHHHHHHH
Q 040680 136 WSLFILMA 143 (459)
Q Consensus 136 ~~Lf~~~~ 143 (459)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 88886653
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.13 E-value=4.9e-12 Score=122.73 Aligned_cols=145 Identities=28% Similarity=0.335 Sum_probs=108.5
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+..+|+.+.++.+|+.|+||+|.|+++...++...+|++|+++.|+ +..+| ..+.+|+.|+.
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP-----------------~avcKL~kL~k 295 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLP-----------------DAVCKLTKLTK 295 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccch-----------------HHHhhhHHHHH
Confidence 5556666666666666666666666666666666666666666643 55555 55677899999
Q ss_pred EeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCC
Q 040680 345 LSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDM 423 (459)
Q Consensus 345 L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 423 (459)
|.+.+|.....-+|+ +|+|.+|+.++.++ +.++-+|...+ .+++|+.|.|+. +.|-.+|..+-
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglc----RC~kL~kL~L~~-NrLiTLPeaIH---------- 359 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLC----RCVKLQKLKLDH-NRLITLPEAIH---------- 359 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhh----hhHHHHHhcccc-cceeechhhhh----------
Confidence 999888666677777 99999999999886 46777776554 788999999985 78888998877
Q ss_pred CCCCCCCccceeeecCCCCCCCCC
Q 040680 424 IEPPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 424 ~~~~~l~~L~~L~l~~c~~l~~lP 447 (459)
.+|.|+.|++.+||+|.--|
T Consensus 360 ----lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 360 ----LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ----hcCCcceeeccCCcCccCCC
Confidence 78999999999999887433
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=2.2e-11 Score=112.44 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=71.4
Q ss_pred HhhccCCCCCcceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccC--------------------cCCCC
Q 040680 332 LLDDLKPHKNLRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSI--------------------ASRTR 390 (459)
Q Consensus 332 ~~~~l~~l~~L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~--------------------~~~~~ 390 (459)
++..++.+++|..|++++| -...+|. ++.+..|+.|+++.+ +...+|.-.+ ....+
T Consensus 427 v~~~l~~l~kLt~L~L~NN--~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNN--LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred chHHHHhhhcceeeecccc--hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 3455677888999999988 4555664 888888999999864 4444432110 01237
Q ss_pred CCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 391 FSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 391 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
+.+|.+|+|.+ +.+..+|...+ ++++|++|+++++|.- .|.
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~Lg--------------nmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILG--------------NMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred hhhcceeccCC-CchhhCChhhc--------------cccceeEEEecCCccC--CCH
Confidence 88899999987 67999999888 8999999999999754 564
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.01 E-value=4.1e-11 Score=115.58 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=56.8
Q ss_pred ccCCCCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccc
Q 040680 335 DLKPHKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRI 412 (459)
Q Consensus 335 ~l~~l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 412 (459)
.|.-|+.|+.|+++.| +...+.. |..+.+|+.|+|+.+ .+...-++.-.....+++|++|.|.| ++++.++...
T Consensus 336 sf~~L~~Le~LnLs~N--si~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA 411 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHN--SIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA 411 (873)
T ss_pred HHHHHHHhhhhccccc--chHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhh
Confidence 4445567777777766 4445543 666777777777763 33333222212222577788888887 5777777654
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCCCCCCCC
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGCPKLILI 446 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 446 (459)
.. .|++|++|+|.+|. +.++
T Consensus 412 fs-------------gl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 412 FS-------------GLEALEHLDLGDNA-IASI 431 (873)
T ss_pred hc-------------cCcccceecCCCCc-ceee
Confidence 32 67788888887774 4443
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.95 E-value=9.1e-08 Score=94.32 Aligned_cols=217 Identities=14% Similarity=0.025 Sum_probs=121.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc--CCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE--FSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~ 82 (459)
.+.+.|+|++|+|||++++.++++.......-.+++++.....+...++..+++++.... ....+.++....+.+.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 355789999999999999999984222221235677777766677888899999986522 122345666666666654
Q ss_pred --CceEEEEEeCCCCCC-hhhHHHHHHhhcc--CCCCc--EEEEeecchhhhc------------------cCChhhhHH
Q 040680 83 --RKKYLLVLDDVWIEN-CDEWLKLETLLRN--SAGGS--NIIVATRSERVAR------------------GLSKGQSWS 137 (459)
Q Consensus 83 --~~~~LlvlDdv~~~~-~~~~~~l~~~l~~--~~~gs--~iiiTtr~~~~~~------------------~l~~~ea~~ 137 (459)
+++.+||+|+++... ....+.+...+.. ...++ .+|.++.+..+.. +++.++..+
T Consensus 135 ~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~ 214 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFD 214 (394)
T ss_pred hcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHH
Confidence 456899999996531 1112223332221 12233 3566655432211 788999999
Q ss_pred HHHHHHccCC--CCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhh----ccc---chhhhHhHhhhhhhhhhhcCCchh
Q 040680 138 LFILMAFEQG--VEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLY----CNK---IEAYWLPFRQEELSKIKQEGNHIL 208 (459)
Q Consensus 138 Lf~~~~~~~~--~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~----~~~---~~~~w~~~~~~~~~~~~~~~~~i~ 208 (459)
++...+.... ...+...++.+++......|..+.|+.++-.... .+. +.+.+..+.+.. -.
T Consensus 215 il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~ 284 (394)
T PRK00411 215 ILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS----------EI 284 (394)
T ss_pred HHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HH
Confidence 9887763221 1122222333333333334667777776643321 111 233333333221 11
Q ss_pred hHHHHhhccCchhHHHHHhhhhc
Q 040680 209 PILELSYNHIPSHLHQCFSYCVL 231 (459)
Q Consensus 209 ~~l~~s~~~L~~~~k~~f~~l~~ 231 (459)
....-.+..||.+.+..+..++.
T Consensus 285 ~~~~~~~~~L~~~~k~~L~ai~~ 307 (394)
T PRK00411 285 VHLSEVLRTLPLHEKLLLRAIVR 307 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 22344577888887776665543
No 20
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.95 E-value=2.1e-09 Score=88.37 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=80.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC-----CCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH-----FDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHH 78 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 78 (459)
..+++.|+|.+|+|||+++.+++++ .... -..++|++.....+...+.+.++..++.......+.++..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4678999999999999999999984 3221 34677999888778999999999999877655556677777777
Q ss_pred hhcCCc-eEEEEEeCCCCC-ChhhHHHHHHhhccCCCCcEEEEeecc
Q 040680 79 QKIDRK-KYLLVLDDVWIE-NCDEWLKLETLLRNSAGGSNIIVATRS 123 (459)
Q Consensus 79 ~~l~~~-~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~ 123 (459)
+.++.. ..+||+|++... +...++.+..... ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777654 459999999554 4334444444333 667788877665
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-10 Score=117.56 Aligned_cols=175 Identities=25% Similarity=0.320 Sum_probs=99.9
Q ss_pred ccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC------CCCcchHHHhhccCCCCCcceEeeee
Q 040680 276 KHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG------HTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~------~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
.+|+|++++++.++.+|++++.+.+|+.++..+|+ +..+|..+.... ......+-+|+.++++++|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 35788888888888888888888888888888754 677776542221 00011144566667777777777766
Q ss_pred ec-------------------------------------------------ccccCCCCCCCCCCCcEEecCCCcCccee
Q 040680 350 FG-------------------------------------------------VRCQYIPQLEQLPSLKSLTLSWLDALVYI 380 (459)
Q Consensus 350 ~~-------------------------------------------------~~~~~l~~l~~l~~L~~L~l~~~~~l~~~ 380 (459)
|. .....+|.+..+.+|+.|+|++ +.+..+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f 398 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF 398 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccC
Confidence 62 2222344455566666666665 345555
Q ss_pred ccccCcCCCCCCCcCEEeecCCCCCCccccccccCCC-------CCCcCCCCC-CCCCccceeeecCCCCCCC--CCC-C
Q 040680 381 CFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDAD-------GSKIDMIEP-PSFPCLSELDISGCPKLIL--IPL-Y 449 (459)
Q Consensus 381 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~-------~~~~~~~~~-~~l~~L~~L~l~~c~~l~~--lP~-l 449 (459)
|...+. .|+.|+.|+|+| ++|+.+|........ ++-+..+|- ..++.|+.+|++.| .|.. +|. +
T Consensus 399 pas~~~---kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 399 PASKLR---KLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEAL 473 (1081)
T ss_pred CHHHHh---chHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhC
Confidence 554443 566666666666 456666654442100 111111111 15667777777655 4543 333 3
Q ss_pred --CCCccceee
Q 040680 450 --PYLETDWRI 458 (459)
Q Consensus 450 --~~L~~~L~i 458 (459)
|.|+ +|.+
T Consensus 474 p~p~Lk-yLdl 483 (1081)
T KOG0618|consen 474 PSPNLK-YLDL 483 (1081)
T ss_pred CCcccc-eeec
Confidence 3566 6554
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=2.5e-10 Score=110.04 Aligned_cols=141 Identities=23% Similarity=0.310 Sum_probs=111.8
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+..+|..++++..|.||||+.|.+..+|..++.|+ |+.|.+++|+ ++.+|..+ +-+..|..
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~i-----------------g~~~tl~~ 170 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEI-----------------GLLPTLAH 170 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCccc-----------------ccchhHHH
Confidence 55678889999999999999999999999988887 8888888854 88888654 44478888
Q ss_pred EeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCC
Q 040680 345 LSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDM 423 (459)
Q Consensus 345 L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 423 (459)
|+.+.| ....+|+ ++.+.+|+.|.+.. +.+.++|.+.. --.|.+|+++ |+++..+|..+.
T Consensus 171 ld~s~n--ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~-----~LpLi~lDfS-cNkis~iPv~fr---------- 231 (722)
T KOG0532|consen 171 LDVSKN--EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELC-----SLPLIRLDFS-CNKISYLPVDFR---------- 231 (722)
T ss_pred hhhhhh--hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHh-----CCceeeeecc-cCceeecchhhh----------
Confidence 888888 5566665 88888999998887 45777777653 2357788888 578888998887
Q ss_pred CCCCCCCccceeeecCCCCCCCCCC
Q 040680 424 IEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 424 ~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.+..|++|.|.+|| |++=|.
T Consensus 232 ----~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 232 ----KMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred ----hhhhheeeeeccCC-CCCChH
Confidence 78899999998885 776665
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=8.9e-09 Score=106.97 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCcCEEeecCCCCCCccccccccC----CCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-CCCCccceee
Q 040680 392 SSLEYISILGCPELKGWLRRIDND----ADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-YPYLETDWRI 458 (459)
Q Consensus 392 ~~L~~L~L~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-l~~L~~~L~i 458 (459)
.+|+.|+|++ +++..+|...... .....+..+| ...++|+.|++++| .+..+|. .++|+ .|.+
T Consensus 342 ~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP-~l~~~L~~LdLs~N-~Lt~LP~l~s~L~-~LdL 409 (788)
T PRK15387 342 SGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGN-RLTSLPVLPSELK-ELMV 409 (788)
T ss_pred cccceEecCC-CccCCCCCCCcccceehhhccccccCc-ccccccceEEecCC-cccCCCCcccCCC-EEEc
Confidence 4788888887 4677666432211 1122222221 24457778888777 8887777 55677 7765
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.78 E-value=2.3e-08 Score=104.40 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=84.4
Q ss_pred cceEeecCCCCccccCcccccccCCCeeccCCCccccccccccc----cCCCCCcchHHHhhccCCCCCcceEeeeeecc
Q 040680 277 HLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILE----GCGHTDVDVEALLDDLKPHKNLRELSIFYFGV 352 (459)
Q Consensus 277 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~----~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 352 (459)
+|+.|++++|.++.+|..+. .+|++|++++|+ +..+|..+. .+.........+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-- 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHN-- 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCC--
Confidence 45666666666666665543 366666666543 555554321 00000001112222222 47888888877
Q ss_pred cccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc-----CCCCCCcCCCCC
Q 040680 353 RCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN-----DADGSKIDMIEP 426 (459)
Q Consensus 353 ~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-----~~~~~~~~~~~~ 426 (459)
....+|. +. ++|+.|++++| .++.+|... .++|+.|++++| ++..+|..... ......+..+|.
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l------p~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAHL------PSGITHLNVQSN-SLTALPETLPPGLKTLEAGENALTSLPA 342 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCcccc------hhhHHHHHhcCC-ccccCCccccccceeccccCCccccCCh
Confidence 3444554 32 47888888875 566555321 134555555552 34433322110 011112222332
Q ss_pred CCCCccceeeecCCCCCCCCCC--CCCCccceee
Q 040680 427 PSFPCLSELDISGCPKLILIPL--YPYLETDWRI 458 (459)
Q Consensus 427 ~~l~~L~~L~l~~c~~l~~lP~--l~~L~~~L~i 458 (459)
...++|+.|++++| .+..+|. .++|+ .|.+
T Consensus 343 ~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~-~LdL 374 (754)
T PRK15370 343 SLPPELQVLDVSKN-QITVLPETLPPTIT-TLDV 374 (754)
T ss_pred hhcCcccEEECCCC-CCCcCChhhcCCcC-EEEC
Confidence 23468889999888 5777887 45677 7765
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=3.9e-10 Score=114.47 Aligned_cols=162 Identities=23% Similarity=0.308 Sum_probs=110.5
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccC--------C-----------CC
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGC--------G-----------HT 325 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~--------~-----------~~ 325 (459)
+..+|..+....+|++|+...|.++.+|+..++++.|++|++..|+ +..+|..+-.. . ..
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 3345555666667777777777777777777777778888877744 67777643000 0 00
Q ss_pred C-----------cc---hHHHhhccCCCCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceecccc-----
Q 040680 326 D-----------VD---VEALLDDLKPHKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSS----- 384 (459)
Q Consensus 326 ~-----------~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~----- 384 (459)
+ .+ ...+..-|..+.+||.|++++| +...+|+ +.+|..|+.|+++|+ +++.+|...
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN--rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN--RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGR 431 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc--ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhh
Confidence 0 00 1345567778899999999999 7777886 899999999999994 677776432
Q ss_pred -------------CcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCC
Q 040680 385 -------------IASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLI 444 (459)
Q Consensus 385 -------------~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 444 (459)
++....++.|+.++++ |++|.+....... ..|+|++|++++|..+.
T Consensus 432 L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~-------------p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEAL-------------PSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhC-------------CCcccceeeccCCcccc
Confidence 2333477888888888 4677765433321 23799999999998644
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.76 E-value=9.9e-08 Score=86.68 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=83.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHH---------HHHHHhccc--cC--------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLE---------KIIAFVAYR--EF-------- 65 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~--~~-------- 65 (459)
.+.+.|+|+.|+|||+|++++.+ ..+..-..++|+............. .+...+... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKD 97 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhc
Confidence 57899999999999999999998 4433222455554444332221111 111222110 00
Q ss_pred CccCHHHHHHHHHhhcC--CceEEEEEeCCCCCC------hhhHHHHHHhhcc--CCCCcEEEEeecchhhhc-------
Q 040680 66 SKHDLNKLQEVHHQKID--RKKYLLVLDDVWIEN------CDEWLKLETLLRN--SAGGSNIIVATRSERVAR------- 128 (459)
Q Consensus 66 ~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~~--~~~gs~iiiTtr~~~~~~------- 128 (459)
...........+.+.+. +++++||+|++.... ......+...+.. ......+|++.....+..
T Consensus 98 ~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~ 177 (234)
T PF01637_consen 98 LSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKS 177 (234)
T ss_dssp S-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTS
T ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccC
Confidence 01111222222222222 345999999996543 1223344444444 123333444443332221
Q ss_pred ------------cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHH
Q 040680 129 ------------GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRT 175 (459)
Q Consensus 129 ------------~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 175 (459)
+|+.+++++++...+... ... +.-++..++|+..+||+|..|..
T Consensus 178 ~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 178 PLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 899999999999876433 111 12345578999999999988764
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.75 E-value=1.3e-08 Score=106.31 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=41.0
Q ss_pred CCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCC
Q 040680 364 PSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKL 443 (459)
Q Consensus 364 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 443 (459)
++|+.|++++| .++.+|.. .+++|+.|+|++| ++..+|.. ..++|+.|+|++| .+
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP~~------l~~sL~~L~Ls~N-~L~~LP~~----------------lp~~L~~LdLs~N-~L 379 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLPAS------LPPELQVLDVSKN-QITVLPET----------------LPPTITTLDVSRN-AL 379 (754)
T ss_pred ccceeccccCC-ccccCChh------hcCcccEEECCCC-CCCcCChh----------------hcCCcCEEECCCC-cC
Confidence 35555555554 34434322 1246777777764 45555532 3468999999999 68
Q ss_pred CCCCC-CC-CCcccee
Q 040680 444 ILIPL-YP-YLETDWR 457 (459)
Q Consensus 444 ~~lP~-l~-~L~~~L~ 457 (459)
..+|. ++ +|+ .|.
T Consensus 380 t~LP~~l~~sL~-~Ld 394 (754)
T PRK15370 380 TNLPENLPAALQ-IMQ 394 (754)
T ss_pred CCCCHhHHHHHH-HHh
Confidence 88997 33 455 544
No 28
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=1.3e-07 Score=85.53 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=80.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|++|+|||+||+++++ ....+...+.|++..... ..... +.+.++ +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---YFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---hhhHH---------------------HHhhcc-c
Confidence 35678999999999999999999 444344456777653210 00001 111122 2
Q ss_pred eEEEEEeCCCCCC-hhhHH-HHHHhhccC-CCCcEEEEeecch----------hhhc-----------cCChhhhHHHHH
Q 040680 85 KYLLVLDDVWIEN-CDEWL-KLETLLRNS-AGGSNIIVATRSE----------RVAR-----------GLSKGQSWSLFI 140 (459)
Q Consensus 85 ~~LlvlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iiiTtr~~----------~~~~-----------~l~~~ea~~Lf~ 140 (459)
.-+|++||+|... ...|+ .+...+... ..|..++|+|.+. .+.. +++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 2489999998642 23343 344434332 2455665544432 1111 788899999998
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
+.+...... --++...-|++++.|..-++.
T Consensus 172 ~~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 172 RNAYQRGIE----LSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHcCCC----CCHHHHHHHHHhccCCHHHHH
Confidence 888654321 123456677777776554443
No 29
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.73 E-value=2.5e-08 Score=93.58 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=145.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCC-eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFD-LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
..|.+.++|.|||||||++-++.. ++..|. ++.++......+...+.-.+...++..... -+.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 358899999999999999999988 666775 666666666667777766666666655432 1223344555666
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc--------cCC-hhhhHHHHHHHHccCCCC-CCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR--------GLS-KGQSWSLFILMAFEQGVE-PRG 152 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~--------~l~-~~ea~~Lf~~~~~~~~~~-~~~ 152 (459)
++|.++|+||..+.- +....+...+-...+.-.|+.|+|...... .|+ .+++.++|...+...... .-.
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 789999999984321 122222333333455567899999866544 333 448999987776543322 112
Q ss_pred chHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhhc-------CCchhhHHHHhhccCchhHHHH
Q 040680 153 SRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQE-------GNHILPILELSYNHIPSHLHQC 225 (459)
Q Consensus 153 ~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~-------~~~i~~~l~~s~~~L~~~~k~~ 225 (459)
......+.+|++...|.|++|..+++..+.-... +--..++.....+... .......++.||.-|....+-.
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~~-~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSPD-EIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 3345678899999999999999999998766522 2222222212211111 1367889999999999988887
Q ss_pred Hhhhhccc
Q 040680 226 FSYCVLFQ 233 (459)
Q Consensus 226 f~~l~~~~ 233 (459)
|..++.+.
T Consensus 245 ~~rLa~~~ 252 (414)
T COG3903 245 FGRLAVFV 252 (414)
T ss_pred hcchhhhh
Confidence 77777643
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.70 E-value=1.2e-06 Score=85.51 Aligned_cols=170 Identities=12% Similarity=0.049 Sum_probs=97.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC------CeEEEEEeCCcccHHHHHHHHHHHhc---ccc-CCccCHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF------DLRIWMCISDIFYHKAMLEKIIAFVA---YRE-FSKHDLNKL 73 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~-~~~~~~~~~ 73 (459)
....+.|+|++|+|||++++.++++ ..... -.++|++.....+...++..|+.++. ... ....+..+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 116 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEV 116 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHH
Confidence 3467899999999999999999984 22111 14577887776677788888999884 211 112234444
Q ss_pred HHHHHhhc--CCceEEEEEeCCCCCChhhHHHHHHhhcc----CC--CCcEEEEeecchhhhc-----------------
Q 040680 74 QEVHHQKI--DRKKYLLVLDDVWIENCDEWLKLETLLRN----SA--GGSNIIVATRSERVAR----------------- 128 (459)
Q Consensus 74 ~~~l~~~l--~~~~~LlvlDdv~~~~~~~~~~l~~~l~~----~~--~gs~iiiTtr~~~~~~----------------- 128 (459)
...+.+.+ .++++++|+|+++......-+.+...+.. .. ....+|.++.......
T Consensus 117 ~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f 196 (365)
T TIGR02928 117 FRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIF 196 (365)
T ss_pred HHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeee
Confidence 45555544 35688999999965411111112222221 11 2334455554332110
Q ss_pred -cCChhhhHHHHHHHHccC-CCCCCCchHHHHHHHHHhhcCCCh-HHHHH
Q 040680 129 -GLSKGQSWSLFILMAFEQ-GVEPRGSRLVEIGKDIVEKCVGVP-LAIRT 175 (459)
Q Consensus 129 -~l~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~glP-Lai~~ 175 (459)
+++.+|..+++..++... ....-.++..+.+..++....|.+ .|+.+
T Consensus 197 ~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 197 PPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 788999999998876421 111112233334455666666777 34443
No 31
>PF13173 AAA_14: AAA domain
Probab=98.69 E-value=1e-07 Score=77.76 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=67.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+++.|.|+.|+||||++++++.+.. ....++|++..+.........+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccC
Confidence 47899999999999999999997422 3346778877665332111000 223333333346
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhh
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVA 127 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~ 127 (459)
+.++++|++... .+|......+....+..+|++|+......
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 788999999665 56766666666666678999999877553
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=8.7e-09 Score=87.78 Aligned_cols=107 Identities=26% Similarity=0.339 Sum_probs=32.3
Q ss_pred cCCCccceEeecCCCCccccCcccc-cccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVS-KLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
+.+..+++.|+|+++.|..+. .++ .+.+|+.|++++|. +..++ ++..+++|++|++++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~------------------~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE------------------GLPGLPRLKTLDLSNN 74 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--T------------------T----TT--EEE--SS
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc------------------CccChhhhhhcccCCC
Confidence 345556788888888887664 455 57788888888865 66554 4556688888888888
Q ss_pred cccccCCCC-C-CCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCC
Q 040680 351 GVRCQYIPQ-L-EQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCP 403 (459)
Q Consensus 351 ~~~~~~l~~-l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 403 (459)
....++. + ..+|+|++|+++++ .+..+.. ......+++|+.|+|.++|
T Consensus 75 --~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~--l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 75 --RISSISEGLDKNLPNLQELYLSNN-KISDLNE--LEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -----S-CHHHHHH-TT--EEE-TTS----SCCC--CGGGGG-TT--EEE-TT-G
T ss_pred --CCCccccchHHhCCcCCEEECcCC-cCCChHH--hHHHHcCCCcceeeccCCc
Confidence 4444432 3 35778888888763 4443322 1222367778888887754
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.62 E-value=8.5e-07 Score=83.02 Aligned_cols=137 Identities=19% Similarity=0.191 Sum_probs=84.3
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHH-HhhcCCceE
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVH-HQKIDRKKY 86 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~ 86 (459)
+.+||++|+||||||+.++. .....|. .++-..+-.+-++++ .+.- .....+++.
T Consensus 51 mIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i-----------------~e~a~~~~~~gr~t 106 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREI-----------------IEEARKNRLLGRRT 106 (436)
T ss_pred eEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHH-----------------HHHHHHHHhcCCce
Confidence 45899999999999999999 5665552 222221111112222 2222 233447899
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccCCCCcEEEE--eecchhhhc--------------cCChhhhHHHHHHHHccCCCCC
Q 040680 87 LLVLDDVWIENCDEWLKLETLLRNSAGGSNIIV--ATRSERVAR--------------GLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 87 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~~~~--------------~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
+|++|.|.. .+-.+-..++|....|.-|+| ||.+....- +|+.++-.+++.+.+.......
T Consensus 107 iLflDEIHR---fnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl 183 (436)
T COG2256 107 ILFLDEIHR---FNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGL 183 (436)
T ss_pred EEEEehhhh---cChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCC
Confidence 999999955 344555667787888988887 555543321 8999999999988443222111
Q ss_pred C--CchH-HHHHHHHHhhcCCChH
Q 040680 151 R--GSRL-VEIGKDIVEKCVGVPL 171 (459)
Q Consensus 151 ~--~~~~-~~~~~~i~~~~~glPL 171 (459)
. ...+ ++....++..++|---
T Consensus 184 ~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 184 GGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CcccccCCHHHHHHHHHhcCchHH
Confidence 1 1112 3355667888887653
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.61 E-value=1.2e-07 Score=98.67 Aligned_cols=152 Identities=23% Similarity=0.238 Sum_probs=105.9
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+..+|+.+. .+|+.|++++|.++.+|.. +++|++|++++|+ +..+|.. ..+|+.
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--------------------p~sL~~ 266 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--------------------PPGLLE 266 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--------------------ccccce
Confidence 556787765 3799999999999999863 5899999999964 7788732 268899
Q ss_pred EeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc----CCCCCC
Q 040680 345 LSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN----DADGSK 420 (459)
Q Consensus 345 L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~----~~~~~~ 420 (459)
|++++| ....+|. .+.+|+.|+++++ .++.+|. .+++|+.|+|++| ++..+|..... ...+..
T Consensus 267 L~Ls~N--~L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~-------~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 267 LSIFSN--PLTHLPA--LPSGLCKLWIFGN-QLTSLPV-------LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ 333 (788)
T ss_pred eeccCC--chhhhhh--chhhcCEEECcCC-ccccccc-------cccccceeECCCC-ccccCCCCcccccccccccCc
Confidence 999888 4455553 2357889999885 5666653 3568999999985 67766542211 111222
Q ss_pred cCCCCCCCCCccceeeecCCCCCCCCCC-CCCCccceee
Q 040680 421 IDMIEPPSFPCLSELDISGCPKLILIPL-YPYLETDWRI 458 (459)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~c~~l~~lP~-l~~L~~~L~i 458 (459)
+..+| ...++|+.|++++| ++..+|. .++|+ .|.+
T Consensus 334 L~~LP-~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~-~L~L 369 (788)
T PRK15387 334 LTSLP-TLPSGLQELSVSDN-QLASLPTLPSELY-KLWA 369 (788)
T ss_pred ccccc-ccccccceEecCCC-ccCCCCCCCcccc-eehh
Confidence 33322 13347899999888 9999998 44677 7654
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.60 E-value=6.9e-09 Score=96.04 Aligned_cols=55 Identities=25% Similarity=0.416 Sum_probs=46.9
Q ss_pred cccCc-cccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCcccccccccc
Q 040680 265 IEIVP-SSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRIL 319 (459)
Q Consensus 265 ~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~ 319 (459)
+..+| ..|+.+++|+.||||+|.|+.| |..|..+.+|-.|-+.+++.++++|...
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 44455 4689999999999999999988 7789999999998888877799999863
No 36
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=9.5e-08 Score=86.61 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=59.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc--ccHHHHHHHHHHHhccccCCccCHH------HHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI--FYHKAMLEKIIAFVAYREFSKHDLN------KLQEV 76 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 76 (459)
-..++|+|++|+|||||+++++++.... +|+.++|+.+... .+..++++++...+-.......... ...+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999964333 8999999987666 6888888888333322211111111 11111
Q ss_pred HHh-hcCCceEEEEEeCC
Q 040680 77 HHQ-KIDRKKYLLVLDDV 93 (459)
Q Consensus 77 l~~-~l~~~~~LlvlDdv 93 (459)
... .-.++++++++|++
T Consensus 95 a~~~~~~G~~vll~iDei 112 (249)
T cd01128 95 AKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHCCCCEEEEEECH
Confidence 221 12478999999999
No 37
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.58 E-value=4.8e-07 Score=75.54 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=61.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.+.|+|.+|+|||++|+++++. ....-..+++++.............+... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccC
Confidence 3578999999999999999999984 33223456677655443222211111100 011111222345
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccC------CCCcEEEEeecch
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNS------AGGSNIIVATRSE 124 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~------~~gs~iiiTtr~~ 124 (459)
++.++|+|+++.........+...+... ..+..+|+||...
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 6789999999754223333444444433 3677888888765
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.57 E-value=7.2e-07 Score=85.39 Aligned_cols=46 Identities=20% Similarity=0.037 Sum_probs=33.5
Q ss_pred cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhh
Q 040680 129 GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGR 178 (459)
Q Consensus 129 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 178 (459)
+++.++..+++.+.+...... --++.+..|++.|+|.|-.+..+..
T Consensus 179 ~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 179 FYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHH
Confidence 889999999999887654432 2235688999999999964444333
No 39
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.53 E-value=8e-07 Score=84.35 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=33.2
Q ss_pred cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhh
Q 040680 129 GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGR 178 (459)
Q Consensus 129 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 178 (459)
+++.+|..+++.+.+..... .-.++.+..|++.|+|.|-.+..+..
T Consensus 158 ~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 158 FYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 89999999999988764332 12235678899999999965544443
No 40
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=9.8e-07 Score=79.85 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=54.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.|.|+|.+|+|||+||+.+++ .........+|+++....... ..++ ..+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~~~---------------------~~~~~ 90 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLAELAQAD---PEVL---------------------EGLEQ 90 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHHHhH---HHHH---------------------hhccc
Confidence 467899999999999999999998 333333455666554321100 0111 11222
Q ss_pred ceEEEEEeCCCCCChh-h-HHHHHHhhccC-CCCcEEEEeecc
Q 040680 84 KKYLLVLDDVWIENCD-E-WLKLETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~iiiTtr~ 123 (459)
.-+||+||++..... . ...+...+... ..+..+|+||+.
T Consensus 91 -~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 91 -ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 238999999754322 2 33444444321 234578888874
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=2.6e-08 Score=84.89 Aligned_cols=113 Identities=25% Similarity=0.231 Sum_probs=45.0
Q ss_pred ccC-CCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 271 SIS-KLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 271 ~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|. +..++..+ ...+++|++|++++
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l----------------~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGL----------------DKNLPNLQELYLSN 97 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHH----------------HHH-TT--EEE-TT
T ss_pred chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccch----------------HHhCCcCCEEECcC
Confidence 454 4678888899998888776 57788889999988855 66664321 01347888898888
Q ss_pred ec-ccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 350 FG-VRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 350 ~~-~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
|. .....+..++.+++|+.|++.+++ +...+.--..-...+|+|+.|+-...
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 81 222334446778888888888754 22111100000016777777765543
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=4.5e-09 Score=101.52 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=124.3
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
...+|..++.+..|..+.+..|.+..+|..++++..|.+||++.|+ +..+|..+-.| -|+.
T Consensus 87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l------------------pLkv 147 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL------------------PLKV 147 (722)
T ss_pred cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC------------------ccee
Confidence 4457888889999999999999999999999999999999999965 88888765444 5889
Q ss_pred EeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCC
Q 040680 345 LSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDM 423 (459)
Q Consensus 345 L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 423 (459)
|-+++| +...+|. ++.++.|..|+.+.| .+..++.... .+.+|+.|++.. +++..+|.+..
T Consensus 148 li~sNN--kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~----~l~slr~l~vrR-n~l~~lp~El~---------- 209 (722)
T KOG0532|consen 148 LIVSNN--KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLG----YLTSLRDLNVRR-NHLEDLPEELC---------- 209 (722)
T ss_pred EEEecC--ccccCCcccccchhHHHhhhhhh-hhhhchHHhh----hHHHHHHHHHhh-hhhhhCCHHHh----------
Confidence 999998 6666765 998899999999975 5777776553 788999999998 57888888765
Q ss_pred CCCCCCCccceeeecCCCCCCCCCC----CCCCccceeeC
Q 040680 424 IEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRIP 459 (459)
Q Consensus 424 ~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i~ 459 (459)
.|| |..||+++| ++..||- +..|+ .|.+|
T Consensus 210 ----~Lp-Li~lDfScN-kis~iPv~fr~m~~Lq-~l~Le 242 (722)
T KOG0532|consen 210 ----SLP-LIRLDFSCN-KISYLPVDFRKMRHLQ-VLQLE 242 (722)
T ss_pred ----CCc-eeeeecccC-ceeecchhhhhhhhhe-eeeec
Confidence 454 999999887 8999998 66677 66654
No 43
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.46 E-value=3.7e-07 Score=86.45 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=58.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhccccCCccCHH------HHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF--YHKAMLEKIIAFVAYREFSKHDLN------KLQEVH 77 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 77 (459)
+..+|+|++|+||||||+++|++.... +|+.++|+.+.+.. .+.++++++...+-.......... ...+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999964333 89999999988876 666777777643322221111111 111111
Q ss_pred Hhh-cCCceEEEEEeCCC
Q 040680 78 HQK-IDRKKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~-l~~~~~LlvlDdv~ 94 (459)
... -.+++++|++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 111 35799999999993
No 44
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.40 E-value=1e-05 Score=70.91 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+.+-++|+|++........+.+...+......+.+|++|++.. +.. +++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 4566899999977665667778888776666677777776532 211 67888877777665 1
Q ss_pred CCCchHHHHHHHHHhhcCCChH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL 171 (459)
. .++.+..+++.++|.|.
T Consensus 169 i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred C----CHHHHHHHHHHcCCCcc
Confidence 1 12457788888888774
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.6e-05 Score=77.04 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++.......+..+...+......+++|++|.+.. +.. +++.++..+.+...+...+..
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3456899999977665566677777766666777777765532 221 788999888887766443321
Q ss_pred CCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
. .++.+..|++.++|.|- |+..+
T Consensus 198 i----~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 198 T----DEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 23456778889999775 44443
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.37 E-value=8.5e-06 Score=80.48 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=80.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHh-hcCCc
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQ-KIDRK 84 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~ 84 (459)
..+.|+|++|+||||+|+.+++ .....| +.++.........+.++.. ... ...++
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~~ir~ii~~-----------------~~~~~~~g~ 92 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVKDLREVIEE-----------------ARQRRSAGR 92 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHHHHHHHHHH-----------------HHHhhhcCC
Confidence 3577899999999999999998 333333 2222111111111222211 111 11357
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEE--eecchhhh--------------ccCChhhhHHHHHHHHccCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIV--ATRSERVA--------------RGLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~~~--------------~~l~~~ea~~Lf~~~~~~~~~ 148 (459)
+.+|++|+++.......+.+...+. .|..++| ||.+.... .+++.++..+++.+.+.....
T Consensus 93 ~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~ 169 (413)
T PRK13342 93 RTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER 169 (413)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc
Confidence 7899999997755444455544443 3555555 33432211 188999999999886533211
Q ss_pred CCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 149 EPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
.. ..-.++....+++.++|.+..+.
T Consensus 170 ~~-i~i~~~al~~l~~~s~Gd~R~al 194 (413)
T PRK13342 170 GL-VELDDEALDALARLANGDARRAL 194 (413)
T ss_pred CC-CCCCHHHHHHHHHhCCCCHHHHH
Confidence 00 01224556788999999887553
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=3.8e-08 Score=88.03 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=98.7
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+.-...|..+|||+|.|+.+-+++.-++.++.|++++|. +..+. .++.|++|+.|++++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~------------------nLa~L~~L~~LDLS~N- 339 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ------------------NLAELPQLQLLDLSGN- 339 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh------------------hhhhcccceEeecccc-
Confidence 345677899999999999999999999999999999965 55543 4567799999999998
Q ss_pred ccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccc--ccccCCCCCCcCCCCCCC
Q 040680 352 VRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLR--RIDNDADGSKIDMIEPPS 428 (459)
Q Consensus 352 ~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~ 428 (459)
....... -.+|-|.+.|.++++ .++.+.. ...+-+|..|++++ ++++++.. .++ +
T Consensus 340 -~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSG-----L~KLYSLvnLDl~~-N~Ie~ldeV~~IG--------------~ 397 (490)
T KOG1259|consen 340 -LLAECVGWHLKLGNIKTLKLAQN-KIETLSG-----LRKLYSLVNLDLSS-NQIEELDEVNHIG--------------N 397 (490)
T ss_pred -hhHhhhhhHhhhcCEeeeehhhh-hHhhhhh-----hHhhhhheeccccc-cchhhHHHhcccc--------------c
Confidence 3333332 356778999999873 4544432 23778899999998 45655532 333 7
Q ss_pred CCccceeeecCCCCCCCCCC
Q 040680 429 FPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 429 l~~L~~L~l~~c~~l~~lP~ 448 (459)
+|.|+.|.+.+|| +..+|+
T Consensus 398 LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 398 LPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred ccHHHHHhhcCCC-ccccch
Confidence 9999999999996 554554
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=1.5e-06 Score=83.24 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=32.8
Q ss_pred CCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccc
Q 040680 273 SKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRI 318 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 318 (459)
..+.++.+|++++|.++.+|. -..+|+.|.+++|+.+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~ 91 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS 91 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch
Confidence 345678899999998888882 2346899999998888877743
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.9e-05 Score=79.87 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=87.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccc-------------------cCCCeEEEEEeCCcccHHHHHHHHHHHhcccc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVK-------------------NHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE 64 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 64 (459)
.++.+.++|+.|+||||+|+.+++..... +.|..++.++.+....+.. .++++....
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~Vdd-IReli~~~~--- 111 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVED-TRELLDNVP--- 111 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHh---
Confidence 35678899999999999999998731111 1122223333221111111 111111110
Q ss_pred CCccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCC
Q 040680 65 FSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLS 131 (459)
Q Consensus 65 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~ 131 (459)
..-..+++-++|+|++...+......+...+.....+.++|++|.+..-.. +++
T Consensus 112 -------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 112 -------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred -------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 011234566899999987766677777777776666777888776632211 789
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
.++..+.+.+.+...+... -.+....|++.++|.+-
T Consensus 179 ~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLR 214 (702)
T ss_pred HHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 9999888887765433222 23456788999998774
No 50
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.7e-06 Score=86.69 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=91.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-CCccCHHHHHHHHHh-hcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-FSKHDLNKLQEVHHQ-KID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~-~l~ 82 (459)
+..+.++|++|+||||+|+.+++.....+.+...+|.|.+... +.......+..++..+ ....+..++.+.+.. -..
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~ 114 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLR 114 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecccccCCHHHHHHHHHHHhhcccc
Confidence 4567899999999999999998842212222222332211100 0000000000000000 001111111111111 123
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|+++......+..+...+......+.+|+++.. ..+.. +++.++..+.+.+.+...+..
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999876666677777777765556565555543 33221 799999999998877544432
Q ss_pred CCCchHHHHHHHHHhhcCCChH-HHHHHhhhh
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL-AIRTVGRLL 180 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL-ai~~~~~~l 180 (459)
. .++.+..|++.++|.+- |+..+-..+
T Consensus 195 i----~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 195 A----EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 23557889999999885 444444433
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.7e-05 Score=82.76 Aligned_cols=149 Identities=12% Similarity=0.120 Sum_probs=90.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC---------------------CCeEEEEEeCCcccHHHHHHHHHHHhcc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH---------------------FDLRIWMCISDIFYHKAMLEKIIAFVAY 62 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 62 (459)
.++.+.++|+.|+||||+|+.+++. +... |..+++++......+.. .+++..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDd-IReLie---- 109 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDD-TRELLD---- 109 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHH-HHHHHH----
Confidence 3566789999999999999999984 3211 11223332221111111 112221
Q ss_pred ccCCccCHHHHHHHHH-hhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------
Q 040680 63 REFSKHDLNKLQEVHH-QKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------ 128 (459)
Q Consensus 63 ~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------ 128 (459)
.+. .-..+++-++|+|++..........+...+.......++|++|.+. .+..
T Consensus 110 -------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fk 176 (944)
T PRK14949 110 -------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLK 176 (944)
T ss_pred -------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCC
Confidence 111 1123566799999998777677777777777666666666665553 3322
Q ss_pred cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 129 GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 129 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
+++.++..+.+.+.+..... .-..+.+..|++.++|.|- |+.++
T Consensus 177 pLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 177 SLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999888876643221 1123457789999999885 44443
No 52
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=1.2e-05 Score=72.91 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=73.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
..+.|+|..|+|||+||+.+++ ....+...++|++..+. ...+.. ..+ .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~------~~~~~~--------------~~~----~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQAA------AGRLRD--------------ALE----AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHh------hhhHHH--------------HHH----HH-hcC
Confidence 4689999999999999999998 44444446667764321 111110 111 11 122
Q ss_pred EEEEEeCCCCCCh-hhH-HHHHHhhcc-CCCCcEEEEeecchh--hhc------------------cCChhhhHHHHHHH
Q 040680 86 YLLVLDDVWIENC-DEW-LKLETLLRN-SAGGSNIIVATRSER--VAR------------------GLSKGQSWSLFILM 142 (459)
Q Consensus 86 ~LlvlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iiiTtr~~~--~~~------------------~l~~~ea~~Lf~~~ 142 (459)
-+||+||+..... ..+ ..+...+.. ...|..+|+|++..- +.. +++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 4899999964321 122 223333322 234667999998521 100 56777777777765
Q ss_pred HccCCCCCCCchHHHHHHHHHhhcCCCh
Q 040680 143 AFEQGVEPRGSRLVEIGKDIVEKCVGVP 170 (459)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~glP 170 (459)
+...+. .--++...-|++++.|-.
T Consensus 175 a~~~~l----~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 175 AQRRGL----ALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHcCC----CCCHHHHHHHHHhCCCCH
Confidence 543222 112234556666665543
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=2.5e-05 Score=74.28 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=90.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCc----ccccCCCeEEEEEe-CCcccHHHHHHHHHHHhccccCCccCHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDE----TVKNHFDLRIWMCI-SDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHH 78 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 78 (459)
.++...++|+.|+|||++|+.+++.- ....|.|...|... +....... .+++...+...
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~--------------- 88 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKK--------------- 88 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcC---------------
Confidence 35678899999999999999998721 12334454445431 22222222 22222222110
Q ss_pred hhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHHHcc
Q 040680 79 QKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILMAFE 145 (459)
Q Consensus 79 ~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~~~~ 145 (459)
-..+++-++|+|+++..+...+..+...+.....++.+|++|.+..... +++.++....+.+...+
T Consensus 89 -p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~ 167 (313)
T PRK05564 89 -PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND 167 (313)
T ss_pred -cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC
Confidence 1124455777888876666788889999988888898888887653321 67888887777554311
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 146 QGVEPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
. .++.+..++..++|.|.-+.
T Consensus 168 ----~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 ----I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ----C----CHHHHHHHHHHcCCCHHHHH
Confidence 0 12336678899999886543
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=5.6e-07 Score=62.80 Aligned_cols=58 Identities=34% Similarity=0.394 Sum_probs=49.2
Q ss_pred ccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 276 KHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
++|++|++++|.+..+|+ .|.++++|++|++++|. +..+|.. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~----------------~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPD----------------AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETT----------------TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHH----------------HHcCCCCCCEEeCcCC
Confidence 468999999999999986 78899999999999865 7888754 6777899999999887
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.29 E-value=4.4e-06 Score=73.04 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=77.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
.-+.+||++|+||||||.-+++ +....|. +++....... .++...+.. ++ ++
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~---------------------~dl~~il~~-l~-~~ 102 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKA---------------------GDLAAILTN-LK-EG 102 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SC---------------------HHHHHHHHT----TT
T ss_pred ceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhH---------------------HHHHHHHHh-cC-CC
Confidence 3577999999999999999999 5665552 2332111011 111121211 22 34
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccC--------CCC-----------cEEEEeecchhhhc-------------cCChh
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRNS--------AGG-----------SNIIVATRSERVAR-------------GLSKG 133 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~iiiTtr~~~~~~-------------~l~~~ 133 (459)
-+|.+|.+..-+...-+.+...+.++ +++ +-|=-|||...+.. ..+.+
T Consensus 103 ~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 103 DILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEE 182 (233)
T ss_dssp -EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THH
T ss_pred cEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHH
Confidence 57888999776544445555544332 111 12233666544433 57888
Q ss_pred hhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHh
Q 040680 134 QSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVG 177 (459)
Q Consensus 134 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 177 (459)
|-.++..+.+..-.. +-.++.+.+|++++.|-|--..-+-
T Consensus 183 el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 183 ELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp HHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 888888877654333 3345678999999999996544333
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.28 E-value=2.6e-07 Score=98.21 Aligned_cols=98 Identities=29% Similarity=0.308 Sum_probs=62.0
Q ss_pred CccceEeecCCCC--ccccCcc-cccccCCCeeccCCCccccccccccccCC------CCCcchHHHhhccCCCCCcceE
Q 040680 275 LKHLWYLNLPGNG--ITKLPNS-VSKLLNLETPDCNGCRSLAELPRILEGCG------HTDVDVEALLDDLKPHKNLREL 345 (459)
Q Consensus 275 l~~L~~L~l~~~~--i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~------~~~~~~~~~~~~l~~l~~L~~L 345 (459)
.+.|++|-+..|. +..++.. |..++.|++||+++|..+.++|..++.+- ........+|.++++|..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 3467777777775 6666664 67799999999999999999998875441 1112224556666666666666
Q ss_pred eeeeecccccCCCC-CCCCCCCcEEecCC
Q 040680 346 SIFYFGVRCQYIPQ-LEQLPSLKSLTLSW 373 (459)
Q Consensus 346 ~l~~~~~~~~~l~~-l~~l~~L~~L~l~~ 373 (459)
++..++ ....+|. ...|++|++|.+..
T Consensus 624 nl~~~~-~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTG-RLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccc-ccccccchhhhcccccEEEeec
Confidence 665552 1122233 33366666666553
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2.1e-05 Score=80.59 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=91.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc-------------------cCCCeEEEEEeCCcccHHHHHHHHHHHhccccC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK-------------------NHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF 65 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 65 (459)
++.+.++|..|+||||+|+.+++..... +.|..+++++......+.. .+++++
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDd-IReLIe------- 109 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDE-MAALLE------- 109 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHH-HHHHHH-------
Confidence 5677799999999999999888732111 1122233333322111111 111111
Q ss_pred CccCHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCC
Q 040680 66 SKHDLNKLQEVHHQ-KIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLS 131 (459)
Q Consensus 66 ~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~ 131 (459)
.... -..++.-++|||++.......+..+...+.......++|++|++..-.. .++
T Consensus 110 ----------~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 110 ----------RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred ----------HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 1111 1123445888999988776677778777776667788888887754322 789
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCCh-HHHHHHh
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVP-LAIRTVG 177 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 177 (459)
.++..+.+.+.+...+... ..+..+.|++.++|.. -|+.++-
T Consensus 180 ~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 180 AGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred HHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999988888765433211 2345678899998855 4665543
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.4e-06 Score=90.43 Aligned_cols=111 Identities=23% Similarity=0.216 Sum_probs=76.0
Q ss_pred cceEeecCCCCcc-ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeeccccc
Q 040680 277 HLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQ 355 (459)
Q Consensus 277 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 355 (459)
.+..|+|++|.+. .+|..++++++|+.|++++|.....+|.. ++.+++|+.|++++|.....
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-----------------~~~l~~L~~LdLs~N~lsg~ 481 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-----------------LGSITSLEVLDLSYNSFNGS 481 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-----------------HhCCCCCCEEECCCCCCCCC
Confidence 3677888888876 67888888888888888887654566643 45568888888888844333
Q ss_pred CCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCc
Q 040680 356 YIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKG 407 (459)
Q Consensus 356 ~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 407 (459)
....++++++|+.|+++++.....+|..... .+.++..+++.+++.+..
T Consensus 482 iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~---~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGG---RLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CchHHhcCCCCCEEECcCCcccccCChHHhh---ccccCceEEecCCccccC
Confidence 3334888888888888886544455544321 234566777777654443
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=5.6e-07 Score=88.77 Aligned_cols=161 Identities=29% Similarity=0.357 Sum_probs=94.5
Q ss_pred cccCccccCCCc-cceEeecCCCCccccCcccccccCCCeeccCCCcccccccccc---ccCCCCCcch---HHHhhccC
Q 040680 265 IEIVPSSISKLK-HLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRIL---EGCGHTDVDV---EALLDDLK 337 (459)
Q Consensus 265 ~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~---~~~~~~~~~~---~~~~~~l~ 337 (459)
+..+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|+ +.++|... ..+.+..... ..++...+
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~ 206 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIE 206 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCccccCchhhh
Confidence 455666666674 8888888888888888778888888888888865 77777643 1122222111 33333334
Q ss_pred CCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCC
Q 040680 338 PHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDAD 417 (459)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 417 (459)
.+.+|++|.+++|. ....+..+.++.++..|.+.++ .+..++. .. +.+++|++|++++ +.+..++. ..
T Consensus 207 ~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~-~~---~~l~~l~~L~~s~-n~i~~i~~-~~---- 274 (394)
T COG4886 207 LLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPE-SI---GNLSNLETLDLSN-NQISSISS-LG---- 274 (394)
T ss_pred hhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccc-hh---ccccccceecccc-cccccccc-cc----
Confidence 44556666666651 1122223555666666654442 2222111 11 2566777888776 35666654 33
Q ss_pred CCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 418 GSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.+.+|+.|+++++.....+|.
T Consensus 275 ----------~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 275 ----------SLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ----------ccCccCEEeccCccccccchh
Confidence 677888888888755544443
No 60
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.26 E-value=3.7e-06 Score=80.22 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=60.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc--ccHHHHHHHHHHHhccccCCccCHH------HHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI--FYHKAMLEKIIAFVAYREFSKHDLN------KLQEV 76 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 76 (459)
-+.++|+|++|+|||||++.+++... +++|+..+|+.+.+. .++.++++.+...+-.......... ...+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 45689999999999999999999522 336998899998865 6888888888654433322221111 11111
Q ss_pred HH-hhcCCceEEEEEeCCC
Q 040680 77 HH-QKIDRKKYLLVLDDVW 94 (459)
Q Consensus 77 l~-~~l~~~~~LlvlDdv~ 94 (459)
.. ..-.+++++|++|.+.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 11 1135789999999993
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.5e-05 Score=77.88 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=59.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCC
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~ 148 (459)
.++.-++|+|++..........+...+..-...+++|++|.+ ..+.. .++.++..+.+.+.+...+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 345668999999887766777777777665566666665554 33332 77888888888776643322
Q ss_pred CCCCchHHHHHHHHHhhcCCChH-HHHHHh
Q 040680 149 EPRGSRLVEIGKDIVEKCVGVPL-AIRTVG 177 (459)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 177 (459)
.. ..+..+.|++.++|.|. |+.++-
T Consensus 202 ~~----d~eAL~~IA~~A~Gs~RdALsLLd 227 (700)
T PRK12323 202 AH----EVNALRLLAQAAQGSMRDALSLTD 227 (700)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 22445788999999886 444433
No 62
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.24 E-value=2.9e-05 Score=80.25 Aligned_cols=175 Identities=9% Similarity=0.012 Sum_probs=95.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCccc---ccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccC-CccCHHHHHHHHHh
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETV---KNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREF-SKHDLNKLQEVHHQ 79 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~ 79 (459)
.++-|+|++|.|||+.++.|.+...- +...+ .+++|+.....+...++..|.+++..... ......+....+..
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 56779999999999999999873211 11222 45677776667788888888888853322 12222333444443
Q ss_pred hcC---CceEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEE--eecchhhh------------------ccCChhhh
Q 040680 80 KID---RKKYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIV--ATRSERVA------------------RGLSKGQS 135 (459)
Q Consensus 80 ~l~---~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iii--Ttr~~~~~------------------~~l~~~ea 135 (459)
.+. +...+||||+++......-+.+...+.+. ..+++|+| +|.+..+. .+++.++-
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEI 941 (1164)
T ss_pred hhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHH
Confidence 331 22458999999543211222344333322 24555544 33321111 17788888
Q ss_pred HHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 040680 136 WSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL 180 (459)
Q Consensus 136 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 180 (459)
.+++..++.......+..-++-+|..++..-|-.=.||.++-...
T Consensus 942 ~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 942 EKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 888888775322112222233333434433344455655554444
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.4e-05 Score=77.19 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=61.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEee-cchhhhc------------cCChhhhHHHHHHHHccCCC
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVAT-RSERVAR------------GLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~~~~------------~l~~~ea~~Lf~~~~~~~~~ 148 (459)
.+++-++|+|+++......+..+...+......+.+|++| +...+.. +++.++..+.+.+.+...+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566789999998876677888888777666666665544 4433332 78999999999888754432
Q ss_pred CCCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 149 EPRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
.. ..+....|++.++|.+- |+..+
T Consensus 206 ~i----e~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 206 KT----DIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 23456778999998764 43433
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.9e-05 Score=77.30 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=88.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCccc-------------------ccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETV-------------------KNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE 64 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 64 (459)
.++.+.++|+.|+||||+|+.+++.... ...|..+++++......+.. .+++
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~-ir~i-------- 107 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEE-TKEI-------- 107 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHH-HHHH--------
Confidence 3556789999999999999999872110 01233334443322211111 1111
Q ss_pred CCccCHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------cC
Q 040680 65 FSKHDLNKLQEVHHQ-KIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------GL 130 (459)
Q Consensus 65 ~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------~l 130 (459)
.+.+.. -..+++-++|+|++..........+...+......+.+|++|.+. .+.. ++
T Consensus 108 ---------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~L 178 (546)
T PRK14957 108 ---------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHI 178 (546)
T ss_pred ---------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCC
Confidence 111111 123456699999997766667777887777666666666555443 2221 78
Q ss_pred ChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCCh-HHHHHHhh
Q 040680 131 SKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVP-LAIRTVGR 178 (459)
Q Consensus 131 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~ 178 (459)
+.++..+.+.+.+...+. .-.++....|++.++|.+ -|+..+-.
T Consensus 179 s~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 179 SQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888777765543222 112344678889999865 45555543
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.24 E-value=2.1e-05 Score=71.36 Aligned_cols=136 Identities=11% Similarity=0.137 Sum_probs=72.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|+.|+|||+||+.+++ .....-..+.|+++..... . ..+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~---~-----------------~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW---F-----------------VPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh---h-----------------hHHHHHHhhh-----
Confidence 35789999999999999999998 4433334566766532100 0 0111111111
Q ss_pred eEEEEEeCCCCCCh-hhHHH-HHHhhccC-CCC-cEEEEeecchhhhc--------------------cCChhhhHHHHH
Q 040680 85 KYLLVLDDVWIENC-DEWLK-LETLLRNS-AGG-SNIIVATRSERVAR--------------------GLSKGQSWSLFI 140 (459)
Q Consensus 85 ~~LlvlDdv~~~~~-~~~~~-l~~~l~~~-~~g-s~iiiTtr~~~~~~--------------------~l~~~ea~~Lf~ 140 (459)
--++++||+..... ..|+. +...+... ..| .++|+||+.....- +++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 13789999954321 23322 33333322 233 47899988542210 556666666666
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
+.+...+. .--++...-|++++.|..-
T Consensus 178 ~~a~~~~~----~l~~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 178 LRARLRGF----ELPEDVGRFLLKRLDREMR 204 (235)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhhcCCHH
Confidence 64433221 1123445556666655443
No 66
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.23 E-value=1.8e-05 Score=73.11 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=75.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-+.+||++|+||||||+.++...+... ..||..+....--.-.++|+++- ++ ...+.++
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a-------------q~--~~~l~kr 222 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA-------------QN--EKSLTKR 222 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH-------------HH--HHhhhcc
Confidence 34567999999999999999998433332 45666554433223333343321 11 1224567
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEE--eecchhhhc--------------cCChhhhHHHHHHH
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIV--ATRSERVAR--------------GLSKGQSWSLFILM 142 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~~~~--------------~l~~~ea~~Lf~~~ 142 (459)
|.+|.+|.|.. .+-.+-..++|.-..|.-++| ||.+...-- .|+.++-..++.+.
T Consensus 223 kTilFiDEiHR---FNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 223 KTILFIDEIHR---FNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred eeEEEeHHhhh---hhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 89999999943 444555677888888987777 565543321 78899888888773
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.23 E-value=4.4e-05 Score=73.56 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=84.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccC-CC-eEEEEEeCCcccHH-HHHH---HHHHHhccc-cCCccCHHHHHH---
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNH-FD-LRIWMCISDIFYHK-AMLE---KIIAFVAYR-EFSKHDLNKLQE--- 75 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~-~~~~---~i~~~l~~~-~~~~~~~~~~~~--- 75 (459)
+.+.++|+.|+|||++|+.+++ ....+ +. ..+.+++++..+.. .... ...+.++.. .......+....
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLK 114 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHH
Confidence 3578999999999999999987 33222 22 23455543321000 0000 000000000 000001111111
Q ss_pred HHHhh--cCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHH
Q 040680 76 VHHQK--IDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFI 140 (459)
Q Consensus 76 ~l~~~--l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~ 140 (459)
..... ..+.+-++|+||+..........+...+......+++|+|+.+.. +.. +++.++..+.+.
T Consensus 115 ~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 115 EYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLE 194 (337)
T ss_pred HHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHH
Confidence 11111 123345899999976544445556666655555677888775432 111 788888888888
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChHHH
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 173 (459)
..+...+... -.+.+..+++.++|.+-.+
T Consensus 195 ~~~~~~~~~~----~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 195 SIAEAEGVDY----DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred HHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 7664433221 2345678888888765443
No 68
>PRK05642 DNA replication initiation factor; Validated
Probab=98.23 E-value=2e-05 Score=71.37 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=73.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
+.+.|+|..|+|||.||+.+++ .....-..++|++..+ +... .. .+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 5688999999999999999988 4433334567776532 1110 01 1222222222
Q ss_pred EEEEEeCCCCCC-hhhHH-HHHHhhccC-CCCcEEEEeecchhhh-c-------------------cCChhhhHHHHHHH
Q 040680 86 YLLVLDDVWIEN-CDEWL-KLETLLRNS-AGGSNIIVATRSERVA-R-------------------GLSKGQSWSLFILM 142 (459)
Q Consensus 86 ~LlvlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iiiTtr~~~~~-~-------------------~l~~~ea~~Lf~~~ 142 (459)
++|+||+.... ...|. .+...+... ..|..+|+|++...-. . +++.++-.+.++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 68899995321 12333 344444332 3567889988753211 1 56666666666644
Q ss_pred HccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 143 AFEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
+...... --++...-|++++.+..-
T Consensus 179 a~~~~~~----l~~ev~~~L~~~~~~d~r 203 (234)
T PRK05642 179 ASRRGLH----LTDEVGHFILTRGTRSMS 203 (234)
T ss_pred HHHcCCC----CCHHHHHHHHHhcCCCHH
Confidence 4332211 112445556666655443
No 69
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.6e-07 Score=88.37 Aligned_cols=100 Identities=14% Similarity=0.022 Sum_probs=46.9
Q ss_pred CCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCC
Q 040680 337 KPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDA 416 (459)
Q Consensus 337 ~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 416 (459)
..+++|+.|++.+|..-...--+..-+..|+.|+|++++.+. .+. +.-.+.||.|..|+++.| .+.++..-....
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~--~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s- 293 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQ--GYKVGTLPGLNQLNLSST-GIASIAEPDVES- 293 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccc--ccccccccchhhhhcccc-CcchhcCCCccc-
Confidence 334556666665551001111113334566666666643322 221 111126677777777664 233321110000
Q ss_pred CCCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 417 DGSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
+. -...||+|+.|+++.| ++...|+
T Consensus 294 -~~-----kt~~f~kL~~L~i~~N-~I~~w~s 318 (505)
T KOG3207|consen 294 -LD-----KTHTFPKLEYLNISEN-NIRDWRS 318 (505)
T ss_pred -hh-----hhcccccceeeecccC-ccccccc
Confidence 00 0016899999999888 4555555
No 70
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.21 E-value=2.5e-07 Score=88.45 Aligned_cols=113 Identities=21% Similarity=0.166 Sum_probs=51.0
Q ss_pred ccceEeecCCCCcc-----ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 276 KHLWYLNLPGNGIT-----KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 276 ~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
.+|+.|++++|.++ .++..+..+++|++|++++|+ +.. .....++..+..+++|++|++++|
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~------------~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGD------------AGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-Cch------------HHHHHHHHHHHhCCCCCEEeccCC
Confidence 45555555555544 233344444555555555543 110 000123344445567777777766
Q ss_pred cccc---cCCC-CCCCCCCCcEEecCCCcCcceecc-ccCcC-CCCCCCcCEEeecCC
Q 040680 351 GVRC---QYIP-QLEQLPSLKSLTLSWLDALVYICF-SSIAS-RTRFSSLEYISILGC 402 (459)
Q Consensus 351 ~~~~---~~l~-~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~-~~~l~~L~~L~L~~~ 402 (459)
.... ..++ .+..+++|++|++++|. +..... ..... ....++|+.|++++|
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 2111 1111 24556677777777653 221100 00000 002356777777765
No 71
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.18 E-value=1.7e-05 Score=65.50 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=47.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|++|+||||+|+.+++ ........+++++.+........... ........................+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999998 44443344666654443222111111 111111111122222222333333333
Q ss_pred -eEEEEEeCCCCC
Q 040680 85 -KYLLVLDDVWIE 96 (459)
Q Consensus 85 -~~LlvlDdv~~~ 96 (459)
..++++|++...
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 489999999765
No 72
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=6.1e-05 Score=73.21 Aligned_cols=82 Identities=10% Similarity=-0.066 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|+++.........+...+.....++.+|++|.+.. +.. +++.++..+.+.+...
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 4455788899987765666667777766666777777766632 222 7788888887764321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. .++.+..++..++|.|...
T Consensus 191 ~----~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 191 V----DPETARRAARASQGHIGRA 210 (394)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 1244678899999998644
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.17 E-value=4.1e-05 Score=72.98 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=84.5
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccc-cCCC-eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVK-NHFD-LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
-+.++|++|+||||+|..+++ ... ..|. .++-++.++..... ..++++........ ..-.++
T Consensus 36 ~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~-------------~~~~~~ 99 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKV-------------TLPPGR 99 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHHHHHHHHhccc-------------cCCCCC
Confidence 367999999999999999988 332 2232 22222222222211 12222221110000 000134
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVEPR 151 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~~~ 151 (459)
.-++|+|+++.........+...+......+++|+++.... +.. +++.++..+.+...+...+...
T Consensus 100 ~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i- 178 (319)
T PLN03025 100 HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY- 178 (319)
T ss_pred eEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 56899999987665556666666655566677777665421 111 7888888888877765433322
Q ss_pred CchHHHHHHHHHhhcCCCh-HHHHHH
Q 040680 152 GSRLVEIGKDIVEKCVGVP-LAIRTV 176 (459)
Q Consensus 152 ~~~~~~~~~~i~~~~~glP-Lai~~~ 176 (459)
.++....|++.++|-. -|+..+
T Consensus 179 ---~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 179 ---VPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1345678888888765 344444
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=2.7e-05 Score=70.40 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+.+.|+|..|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999983
No 75
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.16 E-value=9.9e-06 Score=66.31 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=51.8
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC-ceE
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR-KKY 86 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 86 (459)
|.|+|++|+|||++|+.+++ .... ..+.++.....+. ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~--~l~~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ--YLGF---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HTTS---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHh--hccc---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 57999999999999999999 4332 2344443322100 0111111122222221112 479
Q ss_pred EEEEeCCCCCChhh-----------HHHHHHhhccCC---CCcEEEEeecc
Q 040680 87 LLVLDDVWIENCDE-----------WLKLETLLRNSA---GGSNIIVATRS 123 (459)
Q Consensus 87 LlvlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iiiTtr~ 123 (459)
+|++||++...... ...+...+.... .+..+|.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543332 344444454433 34566777765
No 76
>PRK08116 hypothetical protein; Validated
Probab=98.16 E-value=1.2e-05 Score=74.32 Aligned_cols=103 Identities=23% Similarity=0.261 Sum_probs=60.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
+-+.++|..|+|||.||.++++ ....+...++|+++ ..++..+....... ...+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~~------~~ll~~i~~~~~~~--~~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVNF------PQLLNRIKSTYKSS--GKEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEH------HHHHHHHHHHHhcc--ccccHHH----HHHHhcCCC
Confidence 4588999999999999999999 44444445666653 33444554443221 1112222 233344334
Q ss_pred EEEEEeCCCCCChhhHHH--HHHhhccC-CCCcEEEEeecc
Q 040680 86 YLLVLDDVWIENCDEWLK--LETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 123 (459)
||||||+......+|.. +...+... ..|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995433344433 44444332 456679999964
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=6e-05 Score=77.08 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+++|++|.+.. +.. .++.++..+.+.+.+...+..
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556899999977655556667777765556667777765532 111 788888888888776543321
Q ss_pred CCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
. ..+....|++.++|.+. |+..+
T Consensus 198 i----d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 198 Y----EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred c----CHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 23457789999998874 44444
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=8.5e-05 Score=73.81 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=90.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCc------c------------c-ccCCCeEEEEEeCCcccHHHHHHHHHHHhccccC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDE------T------------V-KNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF 65 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~------~------------~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 65 (459)
++.+.++|+.|+||||+|+.++..- . + ...+..++.++.+....+.. .+++......
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vdd-IR~Iie~~~~--- 110 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDD-IKVILENSCY--- 110 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHH-HHHHHHHHHh---
Confidence 5678899999999999999997610 0 0 11223445555443322222 1122221110
Q ss_pred CccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCCh
Q 040680 66 SKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSK 132 (459)
Q Consensus 66 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~ 132 (459)
.-..+++-++|+|++..........+...+......+++|++|.+ ..+.. +++.
T Consensus 111 -------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~ 177 (491)
T PRK14964 111 -------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPT 177 (491)
T ss_pred -------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccH
Confidence 001245558999999776666677788888776677777766644 33322 6788
Q ss_pred hhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 133 GQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 133 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
++..+.+...+...+... .++....|++.++|.+- |+..+
T Consensus 178 ~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 178 DKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 888888887765443322 23456788999988774 33443
No 79
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.4e-07 Score=86.12 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=99.4
Q ss_pred ccCCCccceEeecCCCCcccc---CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEee
Q 040680 271 SISKLKHLWYLNLPGNGITKL---PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSI 347 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 347 (459)
....+++++.||||+|-+... -.-...|++|+.|+++.|.. . .|.+ .. .-.-+++|+.|.|
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl-~-~~~~-------s~-------~~~~l~~lK~L~l 204 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL-S-NFIS-------SN-------TTLLLSHLKQLVL 204 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-c-CCcc-------cc-------chhhhhhhheEEe
Confidence 456688899999998865532 23456788999999988652 2 1211 00 0114578999999
Q ss_pred eeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCC
Q 040680 348 FYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEP 426 (459)
Q Consensus 348 ~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (459)
++||.+...... +..+|+|+.|.+..++.+..-.. ....+..|+.|+|+++ ++..++.....
T Consensus 205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N-~li~~~~~~~~------------ 267 (505)
T KOG3207|consen 205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNN-NLIDFDQGYKV------------ 267 (505)
T ss_pred ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCC-ccccccccccc------------
Confidence 999766555444 56678999999988642211111 1126778999999984 56666633221
Q ss_pred CCCCccceeeecCCCCCCCC--CC---------CCCCccceee
Q 040680 427 PSFPCLSELDISGCPKLILI--PL---------YPYLETDWRI 458 (459)
Q Consensus 427 ~~l~~L~~L~l~~c~~l~~l--P~---------l~~L~~~L~i 458 (459)
..||.|..|+++.| .+.++ |+ +|+|+ +|.+
T Consensus 268 ~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~-~L~i 308 (505)
T KOG3207|consen 268 GTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLE-YLNI 308 (505)
T ss_pred ccccchhhhhcccc-CcchhcCCCccchhhhcccccce-eeec
Confidence 17999999999998 45543 32 77888 8765
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=8.1e-05 Score=74.15 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..-.....+.+...+......+.+|++|.+ ..+.. +++.++....+.+.+...+..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45679999999654334445565555544444444444443 22222 788999888888776543321
Q ss_pred CCCchHHHHHHHHHhhcC-CChHHHHHHhhhh
Q 040680 150 PRGSRLVEIGKDIVEKCV-GVPLAIRTVGRLL 180 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~-glPLai~~~~~~l 180 (459)
. .++....|++.++ +++.|+..+....
T Consensus 196 i----~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 I----DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred C----CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 2345677888776 4567777776544
No 81
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=5.9e-06 Score=57.57 Aligned_cols=60 Identities=28% Similarity=0.290 Sum_probs=39.4
Q ss_pred CCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCC
Q 040680 364 PSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 364 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 441 (459)
|+|++|++++| .+..++...+. .+++|++|++++ +++..++..... .+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~---~l~~L~~L~l~~-N~l~~i~~~~f~-------------~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS---NLPNLETLDLSN-NNLTSIPPDAFS-------------NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT---TGTTESEEEETS-SSESEEETTTTT-------------TSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc---CCCCCCEeEccC-CccCccCHHHHc-------------CCCCCCEEeCcCCc
Confidence 46777777765 56677665554 667777777775 456666654322 67777777777774
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.0001 Score=74.19 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=87.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc-------------------cCCCeEEEEEeCCcccHHHHHHHHHHHhccccC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK-------------------NHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF 65 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 65 (459)
+..+.++|+.|+||||+|+.+++.--.. +.|..++.++......+..+ ++++..+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~--- 113 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPY--- 113 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhh---
Confidence 5667899999999999999998731111 12223344433222222211 122221110
Q ss_pred CccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------cCCh
Q 040680 66 SKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------GLSK 132 (459)
Q Consensus 66 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------~l~~ 132 (459)
.-..++.-++|+|++..........+...+......+++|++|.+. .+.. +++.
T Consensus 114 -------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~ 180 (509)
T PRK14958 114 -------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 (509)
T ss_pred -------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCH
Confidence 1122455688999998776667777777777666677777766553 2221 6778
Q ss_pred hhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 133 GQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 133 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
++..+.+...+...+... ..+....|++.++|.+- |+..+
T Consensus 181 ~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHH
Confidence 877776665554333211 12346678888888775 44444
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.10 E-value=5.3e-05 Score=78.27 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=89.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCC---CeEEEEEeCCc---ccHHHHHHHH---------------HHHhccc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHF---DLRIWMCISDI---FYHKAMLEKI---------------IAFVAYR 63 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~i---------------~~~l~~~ 63 (459)
...+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...+ +...+..
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC
Confidence 4568999999999999999998753322222 12234433221 1222221111 1111100
Q ss_pred c-----------------CCccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEE--eecch
Q 040680 64 E-----------------FSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIV--ATRSE 124 (459)
Q Consensus 64 ~-----------------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~ 124 (459)
. ....=....+..+.+.+.++++.++-|+.|..+...|+.+...+....+...++| ||++.
T Consensus 255 ~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 255 EPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred chhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc
Confidence 0 0000012245556666667777777666665544556666555554444444555 56643
Q ss_pred hhhc-------------cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhh
Q 040680 125 RVAR-------------GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRL 179 (459)
Q Consensus 125 ~~~~-------------~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 179 (459)
.... +++.+|.++++.+.+...... --++....|.++...-+-|+..++..
T Consensus 335 ~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~----ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 335 EEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH----LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3211 788899999988876532211 11334455555555445666655443
No 84
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=6.2e-05 Score=67.67 Aligned_cols=129 Identities=9% Similarity=0.019 Sum_probs=74.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|++|+|||+|++.++.. . ...|++.. .+...++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 456899999999999999998873 2 12244321 1111111111 01
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEEeecchhh---------hc-----------cCChhhhHHHHHHHH
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIVATRSERV---------AR-----------GLSKGQSWSLFILMA 143 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~~---------~~-----------~l~~~ea~~Lf~~~~ 143 (459)
-++++||+.... ..-+.+...+... ..|..+|+|++...- .. +++.++-.+++++.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995432 1223344444322 347789998874211 10 788888888888887
Q ss_pred ccCCCCCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 144 FEQGVEPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
...... --+++..-|++++.|..-++.
T Consensus 167 ~~~~~~----l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 167 ADRQLY----VDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHcCCC----CCHHHHHHHHHHhhhhHHHHH
Confidence 543221 123456667777776665554
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=6e-05 Score=67.46 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=68.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+-|+|..|+|||.|.+++++ ++.... ..++|++ ..++...+...+.. ... ..+...+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~~----~~~~~~~~~ 97 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADALRD-----GEI----EEFKDRLRS 97 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TSH----HHHHHHHCT
T ss_pred CceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHHHc-----ccc----hhhhhhhhc
Confidence 3578999999999999999999 554432 2466664 34455555555432 122 223333443
Q ss_pred ceEEEEEeCCCCCChhh-H-HHHHHhhccC-CCCcEEEEeecchhh-hc-------------------cCChhhhHHHHH
Q 040680 84 KKYLLVLDDVWIENCDE-W-LKLETLLRNS-AGGSNIIVATRSERV-AR-------------------GLSKGQSWSLFI 140 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~iiiTtr~~~~-~~-------------------~l~~~ea~~Lf~ 140 (459)
- =+|++||++...... | +.+...+... ..|.+||+|++..-. .. +.+.++..+++.
T Consensus 98 ~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 A-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp S-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred C-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 3 378999996543222 2 2333333322 356789999965321 11 566666666666
Q ss_pred HHHccC
Q 040680 141 LMAFEQ 146 (459)
Q Consensus 141 ~~~~~~ 146 (459)
+.+...
T Consensus 177 ~~a~~~ 182 (219)
T PF00308_consen 177 KKAKER 182 (219)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 665433
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00011 Score=74.55 Aligned_cols=153 Identities=11% Similarity=0.124 Sum_probs=86.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccc-------------------cCCCeEEEEEeCCcccHHHHHHHHHHHhcccc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVK-------------------NHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE 64 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 64 (459)
.++.+.++|+.|+||||+|+.++...... +.|..+++++......+. ..++++.....
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd-~ir~l~~~~~~-- 113 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVD-AMRELLDNAQY-- 113 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHH-HHHHHHHHHhh--
Confidence 35667899999999999999997631111 112223333322111111 11122221110
Q ss_pred CCccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------cCC
Q 040680 65 FSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------GLS 131 (459)
Q Consensus 65 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------~l~ 131 (459)
.-..+++-++|+|++..........+...+......+.+|++|.+. .+.. .++
T Consensus 114 --------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~ 179 (527)
T PRK14969 114 --------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (527)
T ss_pred --------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCC
Confidence 0123556689999997766556667777777665666666666443 2221 778
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChH-HHHHHh
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL-AIRTVG 177 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 177 (459)
.++..+.+.+.+...+.. -.++....|++.++|.+- |+..+.
T Consensus 180 ~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 180 PPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred HHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888887777665433221 122445778889999764 444443
No 87
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.07 E-value=0.00013 Score=69.74 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=82.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe--CCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI--SDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
+.+.|+|..|+||||+|+.+++.. ....+. ..++.+ +....... ..+.+..+.... .....
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~~-~~~~i~~~~~~~--------------~~~~~ 101 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGIDV-IRNKIKEFARTA--------------PVGGA 101 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchHH-HHHHHHHHHhcC--------------CCCCC
Confidence 347999999999999999998831 111221 112222 22211111 111111110000 00112
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCCC
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
.+-++++|++..........+...+......+++|+++.... +.. +++.++....+...+...+...
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 356899999866544555667776666566677777764321 111 7888888888887765443211
Q ss_pred CCchHHHHHHHHHhhcCCChHH
Q 040680 151 RGSRLVEIGKDIVEKCVGVPLA 172 (459)
Q Consensus 151 ~~~~~~~~~~~i~~~~~glPLa 172 (459)
.++.+..+++.++|.+--
T Consensus 182 ----~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 182 ----TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred ----CHHHHHHHHHHcCCCHHH
Confidence 234577888888887654
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=7.8e-05 Score=76.42 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=60.2
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCC
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~ 148 (459)
.+++-++|+|++..........+...+......+++|++|.+ ..+.. +++.++..+.+.+.+...+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 356668999999877766777777777766666666665554 33322 89999999888876533222
Q ss_pred CCCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 149 EPRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
.. .+.....|++.++|.+- |+..+
T Consensus 197 ~~----e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 197 PF----EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 23445788999999775 44444
No 89
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4.9e-05 Score=74.74 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=86.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCC-CeEEEEEeCCcccHHHHHHHHHHH---hcc-ccCCccCHHHHHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHF-DLRIWMCISDIFYHKAMLEKIIAF---VAY-REFSKHDLNKLQEVHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~---l~~-~~~~~~~~~~~~~~l~~ 79 (459)
++.+.++|+.|+||||+|+.+++. +...- .... .......-..+....... +.. ...+..+..++.+.+..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~~~--pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~ 115 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKR--LNCENPIGNE--PCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF 115 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh--cCcccccCcc--ccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh
Confidence 456789999999999999999883 32211 0000 000000001111000000 000 00011112222222221
Q ss_pred -hcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHcc
Q 040680 80 -KIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFE 145 (459)
Q Consensus 80 -~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~ 145 (459)
...++.-++|+|++.......+..+...+........+|.+|.+ ..+.. +++.++..+.+.+.+..
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 12345668999999887767777777777654455555545544 33322 78888888888777643
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 146 QGVEPRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
.+.. -.++....|++.++|.+- |+..+
T Consensus 196 Egi~----~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 196 ENVQ----YDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred cCCC----CCHHHHHHHHHHcCChHHHHHHHH
Confidence 3321 123457889999999884 44443
No 90
>PRK04195 replication factor C large subunit; Provisional
Probab=98.06 E-value=9e-05 Score=74.78 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=80.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|++|+||||+|+.++++ .. |+ ++-++.++..... ....++....... .....+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i~~~~~~~--------------sl~~~~ 98 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVAGEAATSG--------------SLFGAR 98 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHHHHhhccC--------------cccCCC
Confidence 678999999999999999999994 32 22 3334444432222 2222222211100 001135
Q ss_pred eEEEEEeCCCCCCh----hhHHHHHHhhccCCCCcEEEEeecchh------hhc--------cCChhhhHHHHHHHHccC
Q 040680 85 KYLLVLDDVWIENC----DEWLKLETLLRNSAGGSNIIVATRSER------VAR--------GLSKGQSWSLFILMAFEQ 146 (459)
Q Consensus 85 ~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~iiiTtr~~~------~~~--------~l~~~ea~~Lf~~~~~~~ 146 (459)
+-+||+|+++.... .....+...+.. .+..||+|+.+.. +.. +++.++....+...+...
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 67999999965422 234455555542 3345666664321 111 678888888887766544
Q ss_pred CCCCCCchHHHHHHHHHhhcCCChHHH
Q 040680 147 GVEPRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~glPLai 173 (459)
+... ..+....|++.++|-.-.+
T Consensus 177 gi~i----~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 177 GIEC----DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred CCCC----CHHHHHHHHHHcCCCHHHH
Confidence 3322 2355778888888765433
No 91
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.04 E-value=0.00015 Score=64.41 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=59.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-|.++|..|.|||++++++.+ +....= .--|.+.. ....+...+.+.++. +..
T Consensus 52 annvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k-------------------~~L~~l~~l~~~l~~--~~~ 106 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSK-------------------EDLGDLPELLDLLRD--RPY 106 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECH-------------------HHhccHHHHHHHHhc--CCC
Confidence 34567899999999999999988 333221 11122221 112333444444442 357
Q ss_pred eEEEEEeCCC-CCChhhHHHHHHhhccC----CCCcEEEEeecchhhhc
Q 040680 85 KYLLVLDDVW-IENCDEWLKLETLLRNS----AGGSNIIVATRSERVAR 128 (459)
Q Consensus 85 ~~LlvlDdv~-~~~~~~~~~l~~~l~~~----~~gs~iiiTtr~~~~~~ 128 (459)
|++|.+||+. +.+...+..+.+.+... ..+..|..||..+++.+
T Consensus 107 kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 107 KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 9999999983 33345677777776543 34455566776666654
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00013 Score=72.57 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=91.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.|+|..|+|||+|++++++ .+.... ..+++++ ...+...+...+.... .....+.+.++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc
Confidence 4578999999999999999998 443222 2444543 3455566665553211 122333343333
Q ss_pred ceEEEEEeCCCCCC--hhhHHHHHHhhccC-CCCcEEEEeecchh-hhc-------------------cCChhhhHHHHH
Q 040680 84 KKYLLVLDDVWIEN--CDEWLKLETLLRNS-AGGSNIIVATRSER-VAR-------------------GLSKGQSWSLFI 140 (459)
Q Consensus 84 ~~~LlvlDdv~~~~--~~~~~~l~~~l~~~-~~gs~iiiTtr~~~-~~~-------------------~l~~~ea~~Lf~ 140 (459)
.-+||+||+.... ....+.+...+... ..|..||+|+.... ... +++.++-.+++.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 3478899995432 12234444444432 34557888866421 111 788999999998
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHh
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVG 177 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 177 (459)
+.+...+.. ..--++...-|++.+.|.|-.+.-+.
T Consensus 286 ~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 286 KEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 887543210 01234667889999999887665443
No 93
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.03 E-value=7.1e-07 Score=85.24 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=66.5
Q ss_pred HHhhccCCCCCcceEeeeeecccccC---CC-CCCCCCCCcEEecCCCcCcceeccc-cCcCCCCCCCcCEEeecCCCCC
Q 040680 331 ALLDDLKPHKNLRELSIFYFGVRCQY---IP-QLEQLPSLKSLTLSWLDALVYICFS-SIASRTRFSSLEYISILGCPEL 405 (459)
Q Consensus 331 ~~~~~l~~l~~L~~L~l~~~~~~~~~---l~-~l~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~L~~~~~l 405 (459)
.+...+..+.+|++|++++|...... ++ .+..+++|++|++++|. +...... .......+++|+.|++++|+ +
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l 233 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-L 233 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-C
Confidence 45556677788999999888333221 11 24556799999999874 3221111 11112267899999999964 4
Q ss_pred Cccc-cccccCCCCCCcCCCCCCCCCccceeeecCCCCCC---------CCCCCCCCccceee
Q 040680 406 KGWL-RRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLI---------LIPLYPYLETDWRI 458 (459)
Q Consensus 406 ~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~---------~lP~l~~L~~~L~i 458 (459)
.... ..+.. .+.. ..++|++|++++|. ++ .+|.+++|+ .+.+
T Consensus 234 ~~~~~~~l~~--------~~~~-~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~-~l~l 285 (319)
T cd00116 234 TDAGAAALAS--------ALLS-PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLL-ELDL 285 (319)
T ss_pred chHHHHHHHH--------HHhc-cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCcc-EEEC
Confidence 4321 11110 0000 24799999999994 43 344466777 7665
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00013 Score=71.74 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=57.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeec-chhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATR-SERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr-~~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++.......+..+...+......+.+|++|. ...+.. +++.++..+.+...+...+.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~- 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI- 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 4566889999977665677778888776666666666553 333322 67888888777766533222
Q ss_pred CCCchHHHHHHHHHhhcCCChH-HHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL-AIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL-ai~~~ 176 (459)
.-.++.+..+++.++|.+- |+..+
T Consensus 205 ---~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 205 ---SVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1123557788999999664 44433
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00015 Score=74.08 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=57.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
++.-++|+|+++.........+...+......+++|++|.+ ..+.. .++.++..+.+.+.+...+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34458899999887767777777777665566666666544 22221 789998888888776543332
Q ss_pred CCCchHHHHHHHHHhhcCCChHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLA 172 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLa 172 (459)
. ..+....|++.++|.+--
T Consensus 203 i----e~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 203 A----EPQALRLLARAARGSMRD 221 (618)
T ss_pred C----CHHHHHHHHHHcCCCHHH
Confidence 1 234567888899887643
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.02 E-value=3.7e-05 Score=80.25 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=73.5
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhh--cCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK--IDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l~~~ 84 (459)
-+.++|++|+||||+|+.+++ ....+|. .++.... ... +.........+. ..++
T Consensus 54 slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~~-~i~------------------dir~~i~~a~~~l~~~~~ 109 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVLA-GVK------------------DLRAEVDRAKERLERHGK 109 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhhh-hhH------------------HHHHHHHHHHHHhhhcCC
Confidence 467999999999999999998 4444441 1111100 000 011111111111 1245
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEe--ecchhh--h------------ccCChhhhHHHHHHHHccCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVA--TRSERV--A------------RGLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiT--tr~~~~--~------------~~l~~~ea~~Lf~~~~~~~~~ 148 (459)
+.++|+|+++.-.....+.+...+ ..|..++|+ |.+... . .+++.++...++.+.+.....
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 679999999765444444444333 345555553 333211 0 188999999998876541100
Q ss_pred ---CCCCchHHHHHHHHHhhcCCCh
Q 040680 149 ---EPRGSRLVEIGKDIVEKCVGVP 170 (459)
Q Consensus 149 ---~~~~~~~~~~~~~i~~~~~glP 170 (459)
.....-.++....|++.+.|..
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCCCH
Confidence 0001112345677888887754
No 97
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=4.6e-06 Score=53.47 Aligned_cols=40 Identities=38% Similarity=0.503 Sum_probs=34.3
Q ss_pred ccceEeecCCCCccccCcccccccCCCeeccCCCccccccc
Q 040680 276 KHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELP 316 (459)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp 316 (459)
++|++|++++|.|+.+|+.+++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47999999999999999999999999999999976 66665
No 98
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00028 Score=67.99 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC--
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID-- 82 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-- 82 (459)
-+.|+|..|.|||+.++.++. ++..... .+++|++-...+.-.++..|+++++..........+..+.+.+.+.
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 388999999999999999999 5544432 2789999999999999999999996433333444555555555554
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCC-CcEE--EEeecchhhhc------------------cCChhhhHHHHHH
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAG-GSNI--IVATRSERVAR------------------GLSKGQSWSLFIL 141 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--iiTtr~~~~~~------------------~l~~~ea~~Lf~~ 141 (459)
++.+++|||+++......-+.+...+..... .++| |..+-+..... +.+.+|-.+.+..
T Consensus 122 ~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 122 GKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred CCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHH
Confidence 4788999999954321211344454444332 3433 33444433222 5666777777766
Q ss_pred HHc
Q 040680 142 MAF 144 (459)
Q Consensus 142 ~~~ 144 (459)
++-
T Consensus 202 R~~ 204 (366)
T COG1474 202 RVE 204 (366)
T ss_pred HHH
Confidence 653
No 99
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.00 E-value=3.6e-05 Score=68.84 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI 43 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~ 43 (459)
||+.+=.++|+|..|.|||+++..+.. .....|+.+++++-
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 466666778999999999999999998 68888988887754
No 100
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=8.1e-07 Score=79.69 Aligned_cols=120 Identities=25% Similarity=0.244 Sum_probs=91.1
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+..+.++..-++.++.|++|+|+|..+-. +..|++|+.||+++|. +.++-. +=.+|.|.+.
T Consensus 296 I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~G-----------------wh~KLGNIKt 356 (490)
T KOG1259|consen 296 ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVG-----------------WHLKLGNIKT 356 (490)
T ss_pred hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhh-----------------hHhhhcCEee
Confidence 45566677778899999999999987765 7889999999999965 444421 1245689999
Q ss_pred EeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc
Q 040680 345 LSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL 409 (459)
Q Consensus 345 L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 409 (459)
|.+.+| ....++.+++|-+|.+|++.++ +++.+.. +-+.+.+|+|+.|.|.+++ +..++
T Consensus 357 L~La~N--~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde--V~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 357 LKLAQN--KIETLSGLRKLYSLVNLDLSSN-QIEELDE--VNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred eehhhh--hHhhhhhhHhhhhheecccccc-chhhHHH--hcccccccHHHHHhhcCCC-ccccc
Confidence 999998 6677888899999999999984 5555543 2334589999999999864 44443
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.99 E-value=2.2e-05 Score=76.26 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=74.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
+++-|.++|++|+|||++|+++++ .....| +.+... .+...... .........+...-..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~~----~l~~~~~g---------~~~~~i~~~f~~a~~~ 214 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVGS----ELVRKYIG---------EGARLVREIFELAKEK 214 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----EecchH----HHHHHhhh---------HHHHHHHHHHHHHHhc
Confidence 356688999999999999999998 444443 222111 11111000 0001111112222234
Q ss_pred ceEEEEEeCCCCC-----------ChhhHHHHHHhh---ccC--CCCcEEEEeecchhhhc----------------cCC
Q 040680 84 KKYLLVLDDVWIE-----------NCDEWLKLETLL---RNS--AGGSNIIVATRSERVAR----------------GLS 131 (459)
Q Consensus 84 ~~~LlvlDdv~~~-----------~~~~~~~l~~~l---~~~--~~gs~iiiTtr~~~~~~----------------~l~ 131 (459)
.+.+|++|+++.. +......+...+ ... ..+..||.||....... ..+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 5789999998542 111112232332 211 34667888887532211 567
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCCh
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVP 170 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 170 (459)
.++..++|..++....... ... ...+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 8899999988775443211 112 346666676653
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.98 E-value=0.00031 Score=68.25 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=84.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc--------------------cCCCeEEEEEeCCcccHHHHHHHHHHHhcccc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK--------------------NHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE 64 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 64 (459)
++.+.++|+.|+|||++|+.++....-. .+++ +++++........ ..+++...+..
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~-- 111 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDAASNNGVD-DIREILDNVKY-- 111 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeeccccCCHH-HHHHHHHHHhc--
Confidence 4577899999999999999887631100 0122 2333322111111 11122222110
Q ss_pred CCccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCC
Q 040680 65 FSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLS 131 (459)
Q Consensus 65 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~ 131 (459)
.-..+++-++|+|++..........+...+......+.+|++|.+.. +.. +++
T Consensus 112 --------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~ 177 (355)
T TIGR02397 112 --------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIP 177 (355)
T ss_pred --------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCC
Confidence 01224455888999866544556667777765556667667765543 221 677
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
.++..+.+...+...+... -++.+..+++.++|.|..+.
T Consensus 178 ~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~ 216 (355)
T TIGR02397 178 LEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDAL 216 (355)
T ss_pred HHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHH
Confidence 8888888877664433211 13557788889999886443
No 103
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00028 Score=67.06 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=57.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhh-hc------------cCChhhhHHHHHHHHccCCCCC
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERV-AR------------GLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~-~~------------~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
.| ++|+|+++..+......+...+..-..++.+|++|.+... .. +++.+++.+.+...... .
T Consensus 107 ~k-v~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~--- 181 (328)
T PRK05707 107 RK-VVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S--- 181 (328)
T ss_pred Ce-EEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C---
Confidence 44 4567999887777788888888776677778888777533 22 77888888888654311 1
Q ss_pred CCchHHHHHHHHHhhcCCChHHHHHH
Q 040680 151 RGSRLVEIGKDIVEKCVGVPLAIRTV 176 (459)
Q Consensus 151 ~~~~~~~~~~~i~~~~~glPLai~~~ 176 (459)
..+.+..++..++|.|.....+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567788999999754433
No 104
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=0.00028 Score=64.84 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=98.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccc--cc--CCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETV--KN--HFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK 80 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 80 (459)
.+-+.|+|.+|+|||+++++++..--. .. .--.|+.|..-..++...++..|+.+++.+.................
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 356889999999999999999863111 11 11156777788888999999999999998766666666555555555
Q ss_pred cCCc-eEEEEEeCCCCC---ChhhHHHHHHh---hccCCCCcEEEEeecchhhh--------c-----cC----ChhhhH
Q 040680 81 IDRK-KYLLVLDDVWIE---NCDEWLKLETL---LRNSAGGSNIIVATRSERVA--------R-----GL----SKGQSW 136 (459)
Q Consensus 81 l~~~-~~LlvlDdv~~~---~~~~~~~l~~~---l~~~~~gs~iiiTtr~~~~~--------~-----~l----~~~ea~ 136 (459)
++.- -=+||+|.+.+. ....-..+... +.+.-.=+-|.+-|++...+ . .| ..+|..
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~ 220 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFR 220 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHH
Confidence 5432 338899998541 11122222222 33223334556666654322 1 11 234455
Q ss_pred HHHHHHHcc-CCCCCCCchHHHHHHHHHhhcCCCh
Q 040680 137 SLFILMAFE-QGVEPRGSRLVEIGKDIVEKCVGVP 170 (459)
Q Consensus 137 ~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~glP 170 (459)
.|+...... .-..+..-..++++..|...++|+.
T Consensus 221 ~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 221 RLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 555332211 1111223344678889999998875
No 105
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00026 Score=71.63 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=56.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCCC
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
++-++|+|++.......+..+...+......+.+|++|.. ..+.. +++.++....+...+...+...
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3346999999776556667777777655555556555533 22321 7888888888877664332211
Q ss_pred CCchHHHHHHHHHhhcCCCh-HHHHHHhh
Q 040680 151 RGSRLVEIGKDIVEKCVGVP-LAIRTVGR 178 (459)
Q Consensus 151 ~~~~~~~~~~~i~~~~~glP-Lai~~~~~ 178 (459)
-.+.+..+++.++|.+ .|+..+-.
T Consensus 199 ----s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 ----EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ----CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1345678888998855 45555544
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00031 Score=67.76 Aligned_cols=86 Identities=8% Similarity=-0.012 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhh-c------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVA-R------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~-~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+.+-++|+|++...+......+...+.....++.+|++|.+.... . +++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 456689999998877777777888777666677777777664322 1 899999999997753110
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~~~ 176 (459)
. ......++..++|.|.....+
T Consensus 217 ---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 ---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 1 112267899999999855443
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00029 Score=71.66 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+........+|++|.+ ..+.. .++.++..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999776656667777777654455566665554 33221 788888888887766543321
Q ss_pred CCCchHHHHHHHHHhhcCCCh-HHHHHHhhhh
Q 040680 150 PRGSRLVEIGKDIVEKCVGVP-LAIRTVGRLL 180 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l 180 (459)
. ..+.+..|++.++|.+ .|+..+...+
T Consensus 198 i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 Y----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 2345778888898854 6777766544
No 108
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.94 E-value=1.9e-05 Score=68.82 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=17.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+.+.|+|.+|+|||+|.++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999999999983
No 109
>PLN03150 hypothetical protein; Provisional
Probab=97.91 E-value=1.9e-05 Score=82.04 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=69.4
Q ss_pred hhccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccc
Q 040680 333 LDDLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRI 412 (459)
Q Consensus 333 ~~~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 412 (459)
|..++++++|+.|++++|.......+.++.+++|+.|+|+++.-...+|... + .+++|+.|+|++|..-..+|..+
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~---~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-G---QLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-h---cCCCCCEEECcCCcccccCChHH
Confidence 3456777899999999884433333358899999999999865444555433 3 78899999999876555677665
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.. .+.++..+++.+|+.+-..|.
T Consensus 511 ~~-------------~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 511 GG-------------RLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred hh-------------ccccCceEEecCCccccCCCC
Confidence 42 245677888888877766665
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.6e-07 Score=81.17 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCccceEeecCCCCcc-ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 274 KLKHLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 274 ~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
.+.+|+.|++.++.+. .+-..|.+-.+|+.|+++.|+.+.+.. .---+.+++.|..|+|+.|
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~---------------~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA---------------LQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH---------------HHHHHHhhhhHhhcCchHh
Confidence 3444444444444433 222234444555555555554333221 1112344567777777776
No 111
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.89 E-value=6.2e-06 Score=81.34 Aligned_cols=151 Identities=24% Similarity=0.319 Sum_probs=90.8
Q ss_pred cccCCCccceEeecCCCCccccCccccccc-CCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPNSVSKLL-NLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
..+..+..+..|++.++.+..+|.....+. +|+.|+++++. +..+|..+ +.+++|+.|+++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~-----------------~~l~~L~~L~l~ 171 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL-----------------RNLPNLKNLDLS 171 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhh-----------------hccccccccccC
Confidence 344556789999999999999999988885 99999999955 77776443 334555555555
Q ss_pred eecccccCCCCCC-CCCCCcEEecCCCcCcceeccccC-------------------cCCCCCCCcCEEeecCCCCCCcc
Q 040680 349 YFGVRCQYIPQLE-QLPSLKSLTLSWLDALVYICFSSI-------------------ASRTRFSSLEYISILGCPELKGW 408 (459)
Q Consensus 349 ~~~~~~~~l~~l~-~l~~L~~L~l~~~~~l~~~~~~~~-------------------~~~~~l~~L~~L~L~~~~~l~~~ 408 (459)
.| ....+|... .+++|+.|+++++ .+..++...- .....+.++..|.+.+ ..+..+
T Consensus 172 ~N--~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~ 247 (394)
T COG4886 172 FN--DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDL 247 (394)
T ss_pred Cc--hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeec
Confidence 55 344444322 5555555555552 3444443210 0001333344444332 223332
Q ss_pred ccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 409 LRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
+.... .+++|+.|++++| .+..++. +.+++ .|.+
T Consensus 248 ~~~~~--------------~l~~l~~L~~s~n-~i~~i~~~~~~~~l~-~L~~ 284 (394)
T COG4886 248 PESIG--------------NLSNLETLDLSNN-QISSISSLGSLTNLR-ELDL 284 (394)
T ss_pred cchhc--------------cccccceeccccc-cccccccccccCccC-EEec
Confidence 22222 6788999999998 6777775 55566 5543
No 112
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00024 Score=68.15 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=58.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++...+......+...+.....++.+|++|... .+.. +++.++..+.+...... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-
Confidence 456689999998877667777777776655555555555433 2222 89999999999874311 1
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~~~ 176 (459)
. -.++.+..+++.++|.|.....+
T Consensus 217 --~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 217 --G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred --C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 11344678999999999755433
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=97.88 E-value=0.00024 Score=66.33 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.++|++|+|||++|+.+++
T Consensus 61 ~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00049 Score=70.18 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=60.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+.+|++|.+ ..+.. .++.++..+.+.+.+...+..
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 44558899999877777777888888776666666655543 33322 788888888887766443321
Q ss_pred CCCchHHHHHHHHHhhcCCCh-HHHHHHhhhh
Q 040680 150 PRGSRLVEIGKDIVEKCVGVP-LAIRTVGRLL 180 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l 180 (459)
. ..+....|++..+|.+ -|+..+-..+
T Consensus 197 i----~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 197 V----DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 1244577888888876 3555554433
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.86 E-value=0.00028 Score=64.06 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=94.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEE-EEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIW-MCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
......||++|.|||+-|..++..---.+.|++.+- .++++...+.- .+ ....+...+..... ...+
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv-----vr------~Kik~fakl~~~~~-~~~~ 124 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV-----VR------EKIKNFAKLTVLLK-RSDG 124 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc-----hh------hhhcCHHHHhhccc-cccC
Confidence 456789999999999999998874222345654432 33443321110 00 00011111111110 0011
Q ss_pred ---ce-EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhh-hc------------cCChhhhHHHHHHHHccC
Q 040680 84 ---KK-YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERV-AR------------GLSKGQSWSLFILMAFEQ 146 (459)
Q Consensus 84 ---~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~-~~------------~l~~~ea~~Lf~~~~~~~ 146 (459)
++ -.+|||+++....+.|..+...+......++.|..+.+-.. .. +|..++..+-++..+-..
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 22 37889999888889999999999887766666555444322 21 788888888888887655
Q ss_pred CCCCCCchHHHHHHHHHhhcCCC-hHHHHHHhhhh
Q 040680 147 GVEPRGSRLVEIGKDIVEKCVGV-PLAIRTVGRLL 180 (459)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~~~l 180 (459)
+...+ .+..+.|++.++|- --|+.++-+.-
T Consensus 205 ~v~~d----~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 205 GVDID----DDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred CCCCC----HHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 54332 34567888888874 44555554443
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0007 Score=69.88 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=56.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++........+.+...+......+.+|+++.+ ..+.. .++.++....+.+.+...+..
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999766555666777777665566666666644 22222 567888887777766543321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. -.+.+..+++.++|.+..+
T Consensus 199 i----~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 199 L----EPGALEAIARAATGSMRDA 218 (585)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 2345778899999988543
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.001 Score=66.73 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=53.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+........+|++|.+ ..+.. +++.++....+...+-..+..
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999999766555666677777665555555555533 22221 678888877777765433321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. ..+.+..+++.++|.+-.+
T Consensus 198 i----d~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 198 Y----EEKALDLLAQASEGGMRDA 217 (486)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 2244667888888866533
No 118
>PRK08181 transposase; Validated
Probab=97.82 E-value=8.3e-05 Score=68.34 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=57.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+-+.++|++|+|||.||..+++ ....+...++|+++ .++...+..... ....+.....+ . +
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l----~-~ 167 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL----D-K 167 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH----h-c
Confidence 45689999999999999999998 44333345566643 344444432211 12222222222 2 2
Q ss_pred eEEEEEeCCCCCChhhH--HHHHHhhccCCCCcEEEEeecch
Q 040680 85 KYLLVLDDVWIENCDEW--LKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~--~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
--|||+||+.......+ ..+...+...-.+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34999999954332222 23444444332234688888643
No 119
>PRK12377 putative replication protein; Provisional
Probab=97.82 E-value=4.6e-05 Score=69.14 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=56.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
..+.|+|..|+|||+||.++++ ........++++++. +++..+-..... ...... +.+.+. +-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l~-~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQELC-KV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHhc-CC
Confidence 5688999999999999999999 454444456666543 344444333211 111112 222232 34
Q ss_pred EEEEEeCCCCCChhhHH--HHHHhhccC-CCCcEEEEeec
Q 040680 86 YLLVLDDVWIENCDEWL--KLETLLRNS-AGGSNIIVATR 122 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iiiTtr 122 (459)
-|||+||+.......|. .+...+... ...-.+||||.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 58999999543323343 344444332 33445788885
No 120
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=5.3e-06 Score=86.10 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=79.8
Q ss_pred ccceEeecCCCCc--cccCccccc-ccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecc
Q 040680 276 KHLWYLNLPGNGI--TKLPNSVSK-LLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGV 352 (459)
Q Consensus 276 ~~L~~L~l~~~~i--~~lp~~i~~-l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 352 (459)
.+|++|++++... ..-|..++. ||.|+.|.+.+-... ..++.+-..+++||..|+|++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~----------------~~dF~~lc~sFpNL~sLDIS~T-- 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD----------------NDDFSQLCASFPNLRSLDISGT-- 183 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec----------------chhHHHHhhccCccceeecCCC--
Confidence 4688888887542 233444444 688888888873311 1122333456688888888887
Q ss_pred cccCCCCCCCCCCCcEEecCCCcCcceec-cccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCc
Q 040680 353 RCQYIPQLEQLPSLKSLTLSWLDALVYIC-FSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPC 431 (459)
Q Consensus 353 ~~~~l~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (459)
....+..++.|+||+.|.+.+.+-..+-. .+.| .+++|+.|++|.=. ...-+..+....+.++ .+|+
T Consensus 184 nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF----~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~-------~Lpe 251 (699)
T KOG3665|consen 184 NISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF----NLKKLRVLDISRDK-NNDDTKIIEQYLECGM-------VLPE 251 (699)
T ss_pred CccCcHHHhccccHHHHhccCCCCCchhhHHHHh----cccCCCeeeccccc-cccchHHHHHHHHhcc-------cCcc
Confidence 55566668888888888888654322111 1122 78888888888632 2222211111122222 5888
Q ss_pred cceeeecCC
Q 040680 432 LSELDISGC 440 (459)
Q Consensus 432 L~~L~l~~c 440 (459)
|+.||.|+.
T Consensus 252 LrfLDcSgT 260 (699)
T KOG3665|consen 252 LRFLDCSGT 260 (699)
T ss_pred ccEEecCCc
Confidence 888888864
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00054 Score=66.77 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=78.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccc------cCCCe-EEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVK------NHFDL-RIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEV 76 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 76 (459)
.++.+.++|+.|+|||++|+.+++..... ..|.. ++-++....... ....+++..+..
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~l~~~~~~-------------- 102 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRNLIDQVRI-------------- 102 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHHHHHHHhh--------------
Confidence 35688899999999999999998732110 11221 111111111111 111122221110
Q ss_pred HHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHH
Q 040680 77 HHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMA 143 (459)
Q Consensus 77 l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~ 143 (459)
.-..+++-++|+|++.......+..+...+......+.+|+++.. ..+.. +++.++....+...+
T Consensus 103 --~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 103 --PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred --ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHH
Confidence 011234557999999655444556666666544445555655533 22211 677788777777766
Q ss_pred ccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 144 FEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
...+... -++.+..++..++|.+-
T Consensus 181 ~~~g~~i----~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 181 VKEGIKF----EDDALHIIAQKADGALR 204 (367)
T ss_pred HHcCCCC----CHHHHHHHHHhCCCCHH
Confidence 5433211 23456778888887554
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00071 Score=71.81 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=56.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|||++..........|...+......+.+|++|.+ ..+.. .++.++..+.+.+.....+..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999887777778888888877667666665543 33332 678888887777655332221
Q ss_pred CCCchHHHHHHHHHhhcCCChH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL 171 (459)
. ..+....|++.++|.+.
T Consensus 199 i----d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 199 V----EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred C----CHHHHHHHHHHcCCCHH
Confidence 1 22345678889999774
No 123
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.80 E-value=2.5e-05 Score=67.39 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=51.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+-+.++|..|+|||.||..+++. ...+=..+.|++. .+++..+- ... .....+...+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l~----~~~-~~~~~~~~~~~l~----~- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDELK----QSR-SDGSYEELLKRLK----R- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHHH----CCH-CCTTHCHHHHHHH----T-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceecccc----ccc-cccchhhhcCccc----c-
Confidence 456889999999999999999983 3333234566643 33433332 211 1122223333332 2
Q ss_pred eEEEEEeCCCCCChhhHHH--HHHhhccC-CCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLK--LETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 123 (459)
-=|||+||+-.....+|.. +...+... ..+ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 2388899996554334322 22222221 233 68888863
No 124
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=8.5e-05 Score=71.45 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=31.5
Q ss_pred cceEeecCCC-CccccCcccccccCCCeeccCCCcccccccccc
Q 040680 277 HLWYLNLPGN-GITKLPNSVSKLLNLETPDCNGCRSLAELPRIL 319 (459)
Q Consensus 277 ~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~ 319 (459)
+|+.|.++++ .++.+|..+ ..+|++|++++|..+..+|..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccccc
Confidence 5888899875 477778655 3689999999987788888543
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.80 E-value=0.00014 Score=71.06 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++-|.++|++|+|||++|+++++
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHH
Confidence 456788999999999999999998
No 126
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.78 E-value=4.4e-06 Score=77.85 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred cccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCcc------------ccccccccccC--------------
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRS------------LAELPRILEGC-------------- 322 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~------------l~~lp~~~~~~-------------- 322 (459)
+.|..+.+|..|.+..|.+..++. .|..+..++++.+-.+.+ +...|..+++.
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~ 237 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN 237 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence 345666677777777777777776 677777777777655441 11111111111
Q ss_pred ---------CCCCcch----H-----HHh-hccCCCCCcceEeeeeecccccCCC--CCCCCCCCcEEecCCCcCcceec
Q 040680 323 ---------GHTDVDV----E-----ALL-DDLKPHKNLRELSIFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYIC 381 (459)
Q Consensus 323 ---------~~~~~~~----~-----~~~-~~l~~l~~L~~L~l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~ 381 (459)
.|..... + ..| .-|++|++|+.|++++| ....+. .|.++.++++|.|.. +++..+.
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~ 314 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAFEGAAELQELYLTR-NKLEFVS 314 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhhcchhhhhhhhcCc-chHHHHH
Confidence 0111100 0 011 23678899999999998 333333 388888888888887 3566665
Q ss_pred cccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCC
Q 040680 382 FSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 382 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 441 (459)
...|- .+..|+.|+|++ +++..+...... .+.+|.+|.+-.||
T Consensus 315 ~~~f~---~ls~L~tL~L~~-N~it~~~~~aF~-------------~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 315 SGMFQ---GLSGLKTLSLYD-NQITTVAPGAFQ-------------TLFSLSTLNLLSNP 357 (498)
T ss_pred HHhhh---ccccceeeeecC-CeeEEEeccccc-------------ccceeeeeehccCc
Confidence 54444 677888888888 456555433221 45677777765543
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0013 Score=66.14 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhh-hc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERV-AR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~-~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++.....+....+...+......+++|++|.+..- .. +++.++..+.+...+...+..
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999887767777788888776667777777766321 11 788888888887666443321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. .++.+..|++.++|.+--+
T Consensus 196 i----~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 196 Y----EPEALEILARSGNGSLRDT 215 (535)
T ss_pred C----CHHHHHHHHHHcCCcHHHH
Confidence 1 2355778899999988433
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00037 Score=64.42 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-+.++|++|+||||+|+.+++
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 129
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00096 Score=68.44 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeec-chhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATR-SERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr-~~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+.+|++|. ...+.. .++.++....+.+.+...+..
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3455789999977665667777777776666777766553 333322 678888888887776443321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. -.+....|++.++|.+.-+
T Consensus 211 i----~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 211 V----EDEALALIARAAEGSVRDG 230 (598)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 2245678899999987544
No 130
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.75 E-value=0.00065 Score=67.12 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=77.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.|+|..|+|||+||+++++ .+.... ..++|++. ..+...+...+... ..+... +.+++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~----~~~~~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFK----EKYRS 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHH----HHHHh
Confidence 4678999999999999999999 444433 24566643 23334444444211 222222 22222
Q ss_pred ceEEEEEeCCCCCChhh--HHHHHHhhccC-CCCcEEEEeecch-h-hhc------------------cCChhhhHHHHH
Q 040680 84 KKYLLVLDDVWIENCDE--WLKLETLLRNS-AGGSNIIVATRSE-R-VAR------------------GLSKGQSWSLFI 140 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~gs~iiiTtr~~-~-~~~------------------~l~~~ea~~Lf~ 140 (459)
.-+|++||+....... .+.+...+... ..|..+|+|+... . +.. +.+.++-.+++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 2388999996432111 12233333221 2455688877642 1 110 456666777777
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
+.+....... -++....|++.+.+..-
T Consensus 279 ~~~~~~~~~l----~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 279 KKAEEEGLEL----PDEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhcCCCHH
Confidence 6664432211 23455666666666544
No 131
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00038 Score=64.64 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=83.2
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
++++=|.+||++|.|||-||++|++ +....| +.+..+ ++.+..-+ +-..+...+-+.-+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS--------ElVqKYiG------EGaRlVRelF~lAr 241 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS--------ELVQKYIG------EGARLVRELFELAR 241 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH--------HHHHHHhc------cchHHHHHHHHHHh
Confidence 3566788999999999999999999 555444 444333 22222211 11223333333333
Q ss_pred -CceEEEEEeCCCCC-----------Chh---hHHHHHHhhccCC--CCcEEEEeecchhhhc---------------cC
Q 040680 83 -RKKYLLVLDDVWIE-----------NCD---EWLKLETLLRNSA--GGSNIIVATRSERVAR---------------GL 130 (459)
Q Consensus 83 -~~~~LlvlDdv~~~-----------~~~---~~~~l~~~l~~~~--~gs~iiiTtr~~~~~~---------------~l 130 (459)
..++.|.+|.++.. +.+ ..-++...+..+. ...|||..|...++.. ++
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 35889999988531 111 1222333344443 4568888887655543 77
Q ss_pred ChhhhHH-HHHHHHccCCCCCCCchHHHHHHHHHhhcCCCh----HHHHHHhhhhh
Q 040680 131 SKGQSWS-LFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVP----LAIRTVGRLLY 181 (459)
Q Consensus 131 ~~~ea~~-Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP----Lai~~~~~~l~ 181 (459)
...+++. +|+-++- .....+.-+++ .+++.+.|.- -|+.+=|+++.
T Consensus 322 Pd~~gR~~Il~IHtr-kM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 322 PDEEGRAEILKIHTR-KMNLADDVDLE----LLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred CCHHHHHHHHHHHhh-hccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhHHH
Confidence 7777765 4544442 22223334444 4555555543 35555565553
No 132
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0012 Score=68.45 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=56.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEee-cchhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVAT-RSERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++.......+..+...+......+.+|++| +...+.. +++.++..+.+...+...+..
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 456688999997766666777777776655555555444 4333332 788888888877655433221
Q ss_pred CCCchHHHHHHHHHhhcCCCh-HHHHHHh
Q 040680 150 PRGSRLVEIGKDIVEKCVGVP-LAIRTVG 177 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 177 (459)
. ..+.+..+++.++|.+ .|+..+.
T Consensus 197 i----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 197 Y----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1244678889998865 4544444
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.73 E-value=0.00031 Score=67.03 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=55.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
+.++.++|++|+|||++|+.+++ .... .++.++.+. ... ...++.+.... ... ...+.
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~--~~~~---~~~~i~~~~-~~~-~~i~~~l~~~~-------------~~~--~~~~~ 100 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCN--EVGA---EVLFVNGSD-CRI-DFVRNRLTRFA-------------STV--SLTGG 100 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH--HhCc---cceEeccCc-ccH-HHHHHHHHHHH-------------Hhh--cccCC
Confidence 56788899999999999999988 3322 233444443 111 11111111110 000 01134
Q ss_pred eEEEEEeCCCCC-ChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 85 KYLLVLDDVWIE-NCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 85 ~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
+-++|+|++... .......+...+.....++++|+||...
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 457899999654 2233345555566666778899888754
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00062 Score=67.63 Aligned_cols=142 Identities=18% Similarity=0.124 Sum_probs=76.7
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCC-C-eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHF-D-LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
-+.|+|.+|+|||+||+++++ .+...+ . .++|++. ..+..++...+... ..+. +.+..+.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~~ 194 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRKK 194 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHhc
Confidence 488999999999999999999 554433 2 5666654 34455555544311 1222 22223333
Q ss_pred eEEEEEeCCCCCC-hhh-HHHHHHhhccC-CCCcEEEEeec-chhhhc-------------------cCChhhhHHHHHH
Q 040680 85 KYLLVLDDVWIEN-CDE-WLKLETLLRNS-AGGSNIIVATR-SERVAR-------------------GLSKGQSWSLFIL 141 (459)
Q Consensus 85 ~~LlvlDdv~~~~-~~~-~~~l~~~l~~~-~~gs~iiiTtr-~~~~~~-------------------~l~~~ea~~Lf~~ 141 (459)
.-+|++||+.... ... -+.+...+... ..|..||+||. ...-.. +.+.+.-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 4589999996321 011 12333333221 23557888874 322111 4556666677766
Q ss_pred HHccCCCCCCCchHHHHHHHHHhhcCCC
Q 040680 142 MAFEQGVEPRGSRLVEIGKDIVEKCVGV 169 (459)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~gl 169 (459)
.+....... -+++..-|++.+.|.
T Consensus 275 ~~~~~~~~l----~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 275 MLEIEHGEL----PEEVLNFVAENVDDN 298 (440)
T ss_pred HHHhcCCCC----CHHHHHHHHhccccC
Confidence 654322211 234556666666654
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.71 E-value=0.00052 Score=64.26 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=63.0
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCcc-------CHHHHH
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKH-------DLNKLQ 74 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~ 74 (459)
|..+..|-|+|-+|.|||.+.+++.+.. .. ..+|+++.+.++.+.+++.|+.+.+..+.... ...+..
T Consensus 27 ~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i 101 (438)
T KOG2543|consen 27 CTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFI 101 (438)
T ss_pred cccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHH
Confidence 5567788999999999999999999943 22 35899999999999999999999852222111 111222
Q ss_pred HHHHh--hc--CCceEEEEEeCCCC
Q 040680 75 EVHHQ--KI--DRKKYLLVLDDVWI 95 (459)
Q Consensus 75 ~~l~~--~l--~~~~~LlvlDdv~~ 95 (459)
..+.+ .. +++.++||+||++.
T Consensus 102 ~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 102 YLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred HHHHhhHHhhccCceEEEEEcCHHh
Confidence 22332 11 24689999999954
No 136
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.71 E-value=0.00016 Score=62.51 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=31.5
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEE
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMC 42 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 42 (459)
....+|.+.|+.|+||||+|+.+++ ....++..+++++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 4567999999999999999999998 6666666666664
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00074 Score=67.21 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=56.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+.+|++|.+ ..+.. .++.++..+.+...+...+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999655444556667777665556666666643 22221 788888888877765433221
Q ss_pred CCCchHHHHHHHHHhhcCCCh-HHHHHHh
Q 040680 150 PRGSRLVEIGKDIVEKCVGVP-LAIRTVG 177 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 177 (459)
. .++.+..+++.++|.+ .|+..+-
T Consensus 200 i----~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 200 T----SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 2345778899998865 4444443
No 138
>PRK06921 hypothetical protein; Provisional
Probab=97.69 E-value=0.00026 Score=65.32 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=55.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccC-CCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNH-FDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..-+.++|..|+|||.||.++++ .+..+ -..++|++.. .++..+.... +.... ..+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~-~~~~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEA-KLNRMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHH-HHHHhc-
Confidence 46789999999999999999999 44443 3456677642 2222222211 11111 122222
Q ss_pred ceEEEEEeCCCC-----CChhhHH--HHHHhhccC-CCCcEEEEeecc
Q 040680 84 KKYLLVLDDVWI-----ENCDEWL--KLETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 84 ~~~LlvlDdv~~-----~~~~~~~--~l~~~l~~~-~~gs~iiiTtr~ 123 (459)
+--|||+||+.. ....+|. .+...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 234999999932 1122343 344444332 234568888863
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0012 Score=67.92 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=55.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeec-chhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATR-SERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr-~~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|+++.........+...+..-...+.+|++|. ...+.. .++.++....+.+.+...+..
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4455789999977665666777777776655666555553 333322 678888777777655432221
Q ss_pred CCCchHHHHHHHHHhhcCCCh-HHHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVP-LAIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glP-Lai~~~ 176 (459)
. ..+.+..+++.++|.. .|+..+
T Consensus 206 I----~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 206 I----DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred C----CHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 2345778899999854 344433
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.68 E-value=0.00062 Score=63.57 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=18.9
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-|.++|++|+|||++|+.+++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988776
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=9.4e-05 Score=71.93 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=55.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCcc-CHHHHHHHHHhhc--
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKH-DLNKLQEVHHQKI-- 81 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l-- 81 (459)
.+.|.++|++|+|||++|+++++.......|+.+.|+.+....+...++...- .....-. ......+.+.+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~~vgy~~~~G~f~~~~~~A~~~ 269 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----PNGVGFRRKDGIFYNFCQQAKEQ 269 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----CCCCCeEecCchHHHHHHHHHhc
Confidence 46788999999999999999998533345677888999988777666543221 0000000 0011112222221
Q ss_pred CCceEEEEEeCCCCCChh
Q 040680 82 DRKKYLLVLDDVWIENCD 99 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~ 99 (459)
.++++++|+|++...+.+
T Consensus 270 p~~~~vliIDEINRani~ 287 (459)
T PRK11331 270 PEKKYVFIIDEINRANLS 287 (459)
T ss_pred ccCCcEEEEehhhccCHH
Confidence 246799999999765433
No 142
>PRK06620 hypothetical protein; Validated
Probab=97.67 E-value=0.00065 Score=60.53 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=20.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+.+.|+|++|+|||+||+.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 66899999999999999998884
No 143
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00079 Score=65.92 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=71.4
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCceE
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKKY 86 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 86 (459)
++.|.|+-++||||+++.+... ..+. .++++..+......-+.+..+.+ .+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~-----------------~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAY-----------------IELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHH-----------------HHhhccCCc
Confidence 9999999999999999777662 3222 67776655432222222222221 111111788
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-----------------cCChhhhHHH
Q 040680 87 LLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-----------------GLSKGQSWSL 138 (459)
Q Consensus 87 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-----------------~l~~~ea~~L 138 (459)
.|+||.|... ..|......+...++. +|++|+-+..... +||-.|...+
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9999999776 7788888888777766 8888888766543 7887777654
No 144
>PRK09183 transposase/IS protein; Provisional
Probab=97.66 E-value=0.0002 Score=65.76 Aligned_cols=101 Identities=10% Similarity=0.086 Sum_probs=52.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
...+.|+|++|+|||+||..+++. ....-..+.+++ ...+...+...... .. ....+.+.+ .+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cC
Confidence 456889999999999999999873 222222334443 22333333222110 11 112222222 23
Q ss_pred eEEEEEeCCCCCChhhHH--HHHHhhccC-CCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWL--KLETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iiiTtr~ 123 (459)
.-++|+||+.......+. .+...+... ..+ .+||||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 459999999653222222 344444322 234 48888864
No 145
>PRK08118 topology modulation protein; Reviewed
Probab=97.65 E-value=2.7e-05 Score=66.55 Aligned_cols=35 Identities=20% Similarity=0.490 Sum_probs=27.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccc-cCCCeEEE
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVK-NHFDLRIW 40 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~w 40 (459)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 458899999999999999999853333 44677776
No 146
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.65 E-value=0.00032 Score=69.00 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=24.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
.++-|.++|++|+|||++|+.+++ .....|
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 456788999999999999999999 444444
No 147
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.5e-06 Score=75.69 Aligned_cols=138 Identities=24% Similarity=0.317 Sum_probs=86.7
Q ss_pred cCCCccceEeecCCCC-ccc--cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 272 ISKLKHLWYLNLPGNG-ITK--LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~-i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
+.+=.+|+.|+++.++ +++ +---+.+++.|+.|++++|....+.-. .+...++ .+|+.|+|+
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-------------v~V~his--e~l~~LNls 294 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-------------VAVAHIS--ETLTQLNLS 294 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-------------HHHhhhc--hhhhhhhhh
Confidence 4556789999999875 553 233467889999999999864332211 1111222 578888888
Q ss_pred ee--cccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 349 YF--GVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 349 ~~--~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
|+ .+....+.. -.+.|+|.+|++++|..++.-....+. .|+-|++|+++.|..+. |...-.
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---kf~~L~~lSlsRCY~i~--p~~~~~----------- 358 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---KFNYLQHLSLSRCYDII--PETLLE----------- 358 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---hcchheeeehhhhcCCC--hHHeee-----------
Confidence 88 222222222 356788999999988777643322222 78889999998886542 111110
Q ss_pred CCCCCccceeeecCC
Q 040680 426 PPSFPCLSELDISGC 440 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c 440 (459)
....|+|.+|++.+|
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 016788999999887
No 148
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0022 Score=66.29 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=55.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+.+|++|.+. .+.. .++.++....+.+.+...+..
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 445588999997766666777777777655555555555443 2221 678888887777766443221
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. -.+.+..|++.++|.+..+
T Consensus 200 i----s~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 200 I----EPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 1 1245778899999877533
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00061 Score=67.56 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=67.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
..+.|+|+.|+|||+||+++++ .+......+++++. ..+...+...+... . ...+++..+. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~~-~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYRN-V 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHccc-C
Confidence 4578999999999999999999 44433344566643 23334444443211 1 1223333333 3
Q ss_pred EEEEEeCCCCCChh--hHHHHHHhhccC-CCCcEEEEeecch-hhhc-------------------cCChhhhHHHHHHH
Q 040680 86 YLLVLDDVWIENCD--EWLKLETLLRNS-AGGSNIIVATRSE-RVAR-------------------GLSKGQSWSLFILM 142 (459)
Q Consensus 86 ~LlvlDdv~~~~~~--~~~~l~~~l~~~-~~gs~iiiTtr~~-~~~~-------------------~l~~~ea~~Lf~~~ 142 (459)
-++++||+...... ..+.+...+... ..|..||+||... .... +++.++-.+++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 47888998543211 122333333211 2456788888542 1111 56777777777776
Q ss_pred Hcc
Q 040680 143 AFE 145 (459)
Q Consensus 143 ~~~ 145 (459)
+..
T Consensus 284 ~~~ 286 (445)
T PRK12422 284 AEA 286 (445)
T ss_pred HHH
Confidence 644
No 150
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.63 E-value=0.00018 Score=64.14 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=37.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAML 53 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 53 (459)
|.-+++.|+|.+|+|||++|.+++. .....-..++|++... ++...+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHH
Confidence 5678999999999999999999987 3434456889998875 4444443
No 151
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.63 E-value=0.00014 Score=68.83 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=56.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-+.++|..|+|||.||.++++ .....-..|+|+++.+ +...+...-. . ...+.... .+.+.+-
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~~----~~~l~~~ 247 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTADE------LIEILREIRF-N--NDKELEEV----YDLLINC 247 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEHHH------HHHHHHHHHh-c--cchhHHHH----HHHhccC
Confidence 36688999999999999999999 4444434667775432 2222222100 0 01111111 1222221
Q ss_pred eEEEEEeCCCCCChhhH--HHHHHhhccC-CCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEW--LKLETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iiiTtr~ 123 (459)
=|||+||+.......| ..+...+... ..+..+||||..
T Consensus 248 -DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 -DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred -CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3899999955433333 3444444433 345578888863
No 152
>PRK06526 transposase; Provisional
Probab=97.62 E-value=0.00017 Score=65.84 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+-+.|+|++|+|||+||..+++.. .+..+ .+.|+ +...+...+..... ..... ..+.+ +. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l~~-l~-~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH-----AGRLQ---AELVK-LG-R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh-----cCcHH---HHHHH-hc-c
Confidence 4568999999999999999998732 22222 33343 22334444332211 11111 22222 22 3
Q ss_pred eEEEEEeCCCCCChhhH--HHHHHhhccC-CCCcEEEEeecch
Q 040680 85 KYLLVLDDVWIENCDEW--LKLETLLRNS-AGGSNIIVATRSE 124 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iiiTtr~~ 124 (459)
.-+||+||+.......+ ..+...+... ..+ .+|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 45899999964322222 2344444322 234 488888653
No 153
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.60 E-value=0.00032 Score=68.40 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++-|.++|++|+|||++|+.+++
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 467788999999999999999998
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.60 E-value=0.00064 Score=68.08 Aligned_cols=144 Identities=12% Similarity=0.123 Sum_probs=79.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.|+|..|+|||+||+++++ .+..+++ .++|++.. .+...+...+.. ...+.. .+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~-----~~~~~~----~~~~~- 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRN-----NTMEEF----KEKYR- 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHc-----CcHHHH----HHHHh-
Confidence 4588999999999999999999 5555442 45566443 233334444321 112222 22333
Q ss_pred ceEEEEEeCCCCCChh--hHHHHHHhhcc-CCCCcEEEEeecchh--hh---c---------------cCChhhhHHHHH
Q 040680 84 KKYLLVLDDVWIENCD--EWLKLETLLRN-SAGGSNIIVATRSER--VA---R---------------GLSKGQSWSLFI 140 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iiiTtr~~~--~~---~---------------~l~~~ea~~Lf~ 140 (459)
+.-+||+||+...... ..+.+...+.. ...|..||+||.... +. . +.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 2338999999643211 12233333322 123556888776421 11 0 567777778887
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
+.+..... .--+++..-|++.+.|..-
T Consensus 291 ~~~~~~~~----~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 291 KKAEEEGI----DLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHcCC----CCCHHHHHHHHcCcCCCHH
Confidence 77654222 1123456677777776654
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0026 Score=65.47 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=56.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+.+|++|.+ ..+.. .++.++....+...+...+..
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34557889999776666677777777766666666655543 33332 677888777776655433321
Q ss_pred CCCchHHHHHHHHHhhcCCCh-HHHHHHh
Q 040680 150 PRGSRLVEIGKDIVEKCVGVP-LAIRTVG 177 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 177 (459)
. -++.+..|++.++|.. .|+..+-
T Consensus 198 i----~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 198 I----SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 2345677888888855 4555543
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.0015 Score=66.31 Aligned_cols=142 Identities=10% Similarity=0.108 Sum_probs=77.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.|+|..|+|||.|+.++++ .....+ ..++|++. ..+..++...+.. ... ..+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~-----~~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRD-----GKG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----ccH----HHHHHHhhc
Confidence 3488999999999999999999 444332 24566643 3333344333321 111 122233332
Q ss_pred ceEEEEEeCCCCCChhh-H-HHHHHhhccC-CCCcEEEEeecch--hhhc------------------cCChhhhHHHHH
Q 040680 84 KKYLLVLDDVWIENCDE-W-LKLETLLRNS-AGGSNIIVATRSE--RVAR------------------GLSKGQSWSLFI 140 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~iiiTtr~~--~~~~------------------~l~~~ea~~Lf~ 140 (459)
-=+|||||+....... + +.+...+... ..|..|||||... .+.. ..+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2478899996532212 2 2333333322 3456788888752 1111 567777778887
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCC
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGV 169 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 169 (459)
+.+....... -++++.-|++++.+.
T Consensus 457 kka~~r~l~l----~~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAVQEQLNA----PPEVLEFIASRISRN 481 (617)
T ss_pred HHHHhcCCCC----CHHHHHHHHHhccCC
Confidence 7765443322 234455566665544
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0017 Score=67.03 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=56.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEee-cchhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVAT-RSERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++=++|+|++..........+...+......+.+|++| +...+.. +++.++....+.+.+...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 344578999998776667788888887766666666555 4333332 788888888887766443321
Q ss_pred CCCchHHHHHHHHHhhcCCChH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL 171 (459)
. -.+.+..|++.++|..-
T Consensus 200 i----~~~al~~La~~s~gdlr 217 (614)
T PRK14971 200 A----EPEALNVIAQKADGGMR 217 (614)
T ss_pred C----CHHHHHHHHHHcCCCHH
Confidence 1 22456788899988654
No 158
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.59 E-value=0.00037 Score=65.58 Aligned_cols=110 Identities=10% Similarity=0.151 Sum_probs=64.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+-+.|+|..|+|||.||.++++. ...+-..+.|+.+ ..++..+...... .+..+..+ .++ +
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~-----~~~~~~l~----~l~-~ 217 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISD-----GSVKEKID----AVK-E 217 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhc-----CcHHHHHH----Hhc-C
Confidence 456889999999999999999994 4333233455543 3455555444321 12222222 222 3
Q ss_pred eEEEEEeCCCCCChhhHHH--HHH-hhccC-CCCcEEEEeecchhhhccCChhhhHHHH
Q 040680 85 KYLLVLDDVWIENCDEWLK--LET-LLRNS-AGGSNIIVATRSERVARGLSKGQSWSLF 139 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iiiTtr~~~~~~~l~~~ea~~Lf 139 (459)
-=||||||+.......|.. +.. .+... ..+-.+|+||. ++.++-.+.|
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN-------l~~~el~~~~ 269 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN-------FDFDELEHHL 269 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC-------CCHHHHHHHH
Confidence 3489999997655556653 333 33332 35667899985 5555544444
No 159
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.00029 Score=63.82 Aligned_cols=101 Identities=12% Similarity=0.169 Sum_probs=57.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
..+.++|.+|+|||+||.++++ .....-..++++++ .++...+-..... .....+. +.+.+. +.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-NV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-cC
Confidence 4688999999999999999999 44433345666643 3344333332210 1112222 223333 23
Q ss_pred EEEEEeCCCCCChhhHHH--HHHhhccC-CCCcEEEEeec
Q 040680 86 YLLVLDDVWIENCDEWLK--LETLLRNS-AGGSNIIVATR 122 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr 122 (459)
=+||+||+......+|+. +...+... .....+||||.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 488899996654455543 33333322 23456788885
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.57 E-value=0.0007 Score=67.70 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+++-|.++|++|+|||++|+.+++.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHh
Confidence 4566889999999999999999994
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0032 Score=64.29 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=54.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++.......+..+...+......+.+|.+|.+ ..+.. +++.++..+.+...+...+..
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999776656667777777665566666665543 22322 678888888887766443321
Q ss_pred CCCchHHHHHHHHHhhcCCChH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL 171 (459)
. -++.+..|++.++|.+-
T Consensus 198 i----d~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 198 Y----EDEALKWIAYKSTGSVR 215 (563)
T ss_pred C----CHHHHHHHHHHcCCCHH
Confidence 1 23456778888888774
No 162
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.55 E-value=0.0013 Score=70.57 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=79.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCC------CCcEEEEeecchh--hh-----------ccCChhhhHHHHHHHH
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSA------GGSNIIVATRSER--VA-----------RGLSKGQSWSLFILMA 143 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~------~gs~iiiTtr~~~--~~-----------~~l~~~ea~~Lf~~~~ 143 (459)
.++.++|+||+.-.|....+-+........ +....+.|.+... +. .+|+..+...+.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 469999999995555455555444443322 1112222333221 00 0999999999998876
Q ss_pred ccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcc------cchhhhHhHhhhhhhhhhhcCCchhhHHHHhhcc
Q 040680 144 FEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCN------KIEAYWLPFRQEELSKIKQEGNHILPILELSYNH 217 (459)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~s~~~ 217 (459)
.... ....+..+.|.++..|.|+-+.-+-..+... .....|+.-.. ..... ...+.+.+.+..-.+.
T Consensus 233 ~~~~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i~~~-~~~~~vv~~l~~rl~k 305 (849)
T COG3899 233 GCTK-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SLGIL-ATTDAVVEFLAARLQK 305 (849)
T ss_pred CCcc-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hcCCc-hhhHHHHHHHHHHHhc
Confidence 4422 2234568899999999999888777776553 22334432110 01111 1111233446666677
Q ss_pred CchhHHHHHhhhhc
Q 040680 218 IPSHLHQCFSYCVL 231 (459)
Q Consensus 218 L~~~~k~~f~~l~~ 231 (459)
||...+......++
T Consensus 306 L~~~t~~Vl~~AA~ 319 (849)
T COG3899 306 LPGTTREVLKAAAC 319 (849)
T ss_pred CCHHHHHHHHHHHH
Confidence 77766665555444
No 163
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=9.9e-05 Score=47.25 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCCC
Q 040680 392 SSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPLY 449 (459)
Q Consensus 392 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~l 449 (459)
++|++|+++++ ++.+++..+. .+++|+.|++++| .+.++|.+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~--------------~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELS--------------NLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGT--------------TCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCC-CCcccCchHh--------------CCCCCCEEEecCC-CCCCCcCC
Confidence 46788888874 6777776555 7888888888888 56666654
No 164
>PRK04296 thymidine kinase; Provisional
Probab=97.54 E-value=0.00015 Score=63.39 Aligned_cols=114 Identities=8% Similarity=-0.039 Sum_probs=64.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCC--ccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFS--KHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 83 (459)
.++.|+|..|.||||+|..++. +...+...++.+. ..++.+.....++.+++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999999988 4433333444442 1112122233344444322111 1233444444444 233
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhcc-CCCCcEEEEeecchhhh
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRN-SAGGSNIIVATRSERVA 127 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~~~ 127 (459)
+.-++|+|.+.--+ -+++...+.. ...|..||+|.++....
T Consensus 78 ~~dvviIDEaq~l~---~~~v~~l~~~l~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 78 KIDCVLIDEAQFLD---KEQVVQLAEVLDDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCCEEEEEccccCC---HHHHHHHHHHHHHcCCeEEEEecCcccc
Confidence 44589999994322 2223333333 45688999999987543
No 165
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.54 E-value=0.00043 Score=62.53 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=52.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCC------CeEEEEEeCCcccHHHHHHHHHHHhccc---------cCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHF------DLRIWMCISDIFYHKAMLEKIIAFVAYR---------EFSK 67 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------~~~~ 67 (459)
+.-+++.|+|.+|+|||+||.+++.. ..... ..++|++....++...+. ++.+..... -...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45679999999999999999999863 22223 578899887766654443 333332211 0111
Q ss_pred cCHHHHHHHHHhhcC----CceEEEEEeCC
Q 040680 68 HDLNKLQEVHHQKID----RKKYLLVLDDV 93 (459)
Q Consensus 68 ~~~~~~~~~l~~~l~----~~~~LlvlDdv 93 (459)
.+.++....+.+... .+.-++|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 334444444443322 24457888887
No 166
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0057 Score=54.49 Aligned_cols=169 Identities=16% Similarity=0.136 Sum_probs=97.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhh----
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK---- 80 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---- 80 (459)
.+++.++|.-|.|||.+++++.. ...+.=.+++.+ -........+...++..+..+. ..........+.+.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~--s~~~d~~~~v~i-~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLA--SLNEDQVAVVVI-DKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHH--hcCCCceEEEEe-cCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHHHH
Confidence 56899999999999999995443 222211122222 2333456667777777776522 22233222222222
Q ss_pred -cCCce-EEEEEeCCCCCChhhHHHHHHhhccCCCCc---EEEEeecc---h-----hh------------hccCChhhh
Q 040680 81 -IDRKK-YLLVLDDVWIENCDEWLKLETLLRNSAGGS---NIIVATRS---E-----RV------------ARGLSKGQS 135 (459)
Q Consensus 81 -l~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs---~iiiTtr~---~-----~~------------~~~l~~~ea 135 (459)
-+++| ..+++|++.....+..+.++-+..-...++ +|+..-.- . .. ..+++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 24677 899999997655555655554433222121 23322111 0 00 018999999
Q ss_pred HHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhh
Q 040680 136 WSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRL 179 (459)
Q Consensus 136 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 179 (459)
..++.....+...+.+ ---.+....|.....|.|.++..++..
T Consensus 206 ~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHHH
Confidence 8888887765543322 222345678899999999999877643
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0022 Score=60.50 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=56.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++=++|+|+++.........+...+..-..++.+|++|.+.. +.. +++.+++.+.+... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~----~~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ----GV- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc----CC-
Confidence 4456889999977766667777777777777877777776533 322 56778887777542 11
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~~~ 176 (459)
. +..+..++..++|.|+....+
T Consensus 187 ---~--~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 ---S--ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---C--hHHHHHHHHHcCCCHHHHHHH
Confidence 1 122667899999999865433
No 168
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00031 Score=64.28 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=47.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
+.=+.++|.+|+|||.||.++++ ++...--.+.++. ..++..++...... ......+.+.++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~~- 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELKK- 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhhc-
Confidence 44578999999999999999999 4443323555554 34555555554432 1122223332222
Q ss_pred eEEEEEeCCCCCChhhH
Q 040680 85 KYLLVLDDVWIENCDEW 101 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~ 101 (459)
-=||||||+-......|
T Consensus 168 ~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 168 VDLLIIDDIGYEPFSQE 184 (254)
T ss_pred CCEEEEecccCccCCHH
Confidence 23899999965433444
No 169
>PF14516 AAA_35: AAA-like domain
Probab=97.50 E-value=0.014 Score=55.85 Aligned_cols=169 Identities=11% Similarity=0.047 Sum_probs=96.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-----ccHHHHHHHHHHHhc----cccC-------Ccc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-----FYHKAMLEKIIAFVA----YREF-------SKH 68 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~----~~~~-------~~~ 68 (459)
-+.+.|.|+-.+|||+|..++.+ ..+..=..++++++... .+....++.++..+. .... ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 46789999999999999999988 34332235567775542 245555555555443 2210 011
Q ss_pred CHHHHHHHHHhhc---CCceEEEEEeCCCCCCh------hhHHHHHHhhccCC----CCcEEEEeecch---hhhc----
Q 040680 69 DLNKLQEVHHQKI---DRKKYLLVLDDVWIENC------DEWLKLETLLRNSA----GGSNIIVATRSE---RVAR---- 128 (459)
Q Consensus 69 ~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~------~~~~~l~~~l~~~~----~gs~iiiTtr~~---~~~~---- 128 (459)
........+.+.+ -+++.+|++|+++..-. +-+..++....... -..-.+|...+. ....
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~S 188 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQS 188 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCC
Confidence 1122222333321 25899999999964311 12222333222111 011112222211 1111
Q ss_pred -----------cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcc
Q 040680 129 -----------GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCN 183 (459)
Q Consensus 129 -----------~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~ 183 (459)
+|+.+|...|..++-..- -....++|...++|+|.-+..++..+...
T Consensus 189 PFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 189 PFNIGQPIELPDFTPEEVQELAQRYGLEF--------SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CcccccceeCCCCCHHHHHHHHHhhhccC--------CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 899999999988764221 11228899999999999999999998664
No 170
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.50 E-value=0.00044 Score=69.79 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=61.2
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
|..+++.++|++|+||||||.-++++ ..| .++=|++++..+...+-..|...+........ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 66899999999999999999999983 222 35567788887777777767665543221111 2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhc
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~ 109 (459)
+++.-+|+|.++.......+.+...+.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHH
Confidence 567789999996654444555555544
No 171
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.49 E-value=0.00089 Score=56.74 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.1
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF 47 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~ 47 (459)
++.|+|.+|+|||++|..++. ....+-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 478999999999999999988 333344577888776554
No 172
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00039 Score=63.19 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=36.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC----CCeEEEEEeCCcccHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH----FDLRIWMCISDIFYHKAM 52 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 52 (459)
+.-+++.|+|.+|+|||++|.+++........ -..++|++....++..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 45689999999999999999999853222221 368999998776665444
No 173
>PRK07261 topology modulation protein; Provisional
Probab=97.47 E-value=0.00029 Score=60.47 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.|.|+|++|+||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999863
No 174
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.47 E-value=0.00031 Score=55.15 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=18.3
Q ss_pred EEeecCCCCcHHHHHHHHhC
Q 040680 8 FLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~ 27 (459)
|-|+|.+|+|||++|..++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999887
No 175
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.46 E-value=0.00039 Score=62.78 Aligned_cols=46 Identities=11% Similarity=-0.027 Sum_probs=35.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKA 51 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 51 (459)
+.-+++.|+|.+|+|||++|.+++.+ ....-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 45689999999999999999999973 33344678999877 444443
No 176
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.46 E-value=0.00012 Score=64.23 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=52.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccC---CccCHHHHHH-HHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREF---SKHDLNKLQE-VHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~ 79 (459)
++||.++|+.|+||||.+.+++. +.+.+-..+..++..... ...+.++..++.++.+-. ...+..+... .+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 58999999999999998888887 343334466777765433 555777788888875531 2223333332 3332
Q ss_pred hcCCceEEEEEeCCC
Q 040680 80 KIDRKKYLLVLDDVW 94 (459)
Q Consensus 80 ~l~~~~~LlvlDdv~ 94 (459)
.-.++.=++++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 211222377788664
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.46 E-value=0.00072 Score=60.95 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=59.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEE--e--CC-----cccHHHHH----HHHHHHhccccCCccCHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMC--I--SD-----IFYHKAML----EKIIAFVAYREFSKHDLN 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~--~--~~-----~~~~~~~~----~~i~~~l~~~~~~~~~~~ 71 (459)
..+|.+.|.+|.|||+||.+++.+.-....|+.++... + ++ .-+..+-. +-+...+..- ......+
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~-~~~~~~~ 152 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRR-LGASFMQ 152 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHH-hChHHHH
Confidence 35899999999999999999887422234455444332 1 11 00222211 1121111100 0011111
Q ss_pred HHHH--------HHHhhcCCce---EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeec
Q 040680 72 KLQE--------VHHQKIDRKK---YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATR 122 (459)
Q Consensus 72 ~~~~--------~l~~~l~~~~---~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr 122 (459)
.... .-..++++.. -++|+|.+...+. .++...+-..+.+|++|+|=-
T Consensus 153 ~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 153 YCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCCCCEEEEeCC
Confidence 1110 0013445543 4899999977544 455555556678999998754
No 178
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0028 Score=55.74 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=51.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
--|.+||--|.|||.|++++.+ ++.+..-. -|.+.+. ...+...+.+.++. ..+|
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-------------------dl~~Lp~l~~~Lr~--~~~k 140 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-------------------DLATLPDLVELLRA--RPEK 140 (287)
T ss_pred cceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-------------------HHhhHHHHHHHHhc--CCce
Confidence 3467999999999999999998 55555433 2223221 11122223333332 3679
Q ss_pred EEEEEeCCC-CCChhhHHHHHHhhccC
Q 040680 86 YLLVLDDVW-IENCDEWLKLETLLRNS 111 (459)
Q Consensus 86 ~LlvlDdv~-~~~~~~~~~l~~~l~~~ 111 (459)
+.+..||.. +.+...+..+...+...
T Consensus 141 FIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 141 FILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred EEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 999999983 34446788888877644
No 179
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.44 E-value=0.00046 Score=61.94 Aligned_cols=43 Identities=9% Similarity=-0.041 Sum_probs=33.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF 47 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~ 47 (459)
+.-+++.|+|.+|+||||+|.+++. ....+-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence 4578999999999999999999987 333333467888765544
No 180
>PTZ00202 tuzin; Provisional
Probab=97.43 E-value=0.0042 Score=60.05 Aligned_cols=126 Identities=11% Similarity=0.121 Sum_probs=71.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc---
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI--- 81 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 81 (459)
++++.|.|++|+|||||++.+... .. + ..++++.. ...+++..++.+++.+... ...++...+.+.+
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vNpr---g~eElLr~LL~ALGV~p~~--~k~dLLrqIqeaLl~~ 355 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVDVR---GTEDTLRSVVKALGVPNVE--ACGDLLDFISEACRRA 355 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEECCC---CHHHHHHHHHHHcCCCCcc--cHHHHHHHHHHHHHHH
Confidence 569999999999999999999973 22 2 23333333 5789999999999963221 1123333332222
Q ss_pred --C-CceEEEEEeCCCCCCh-hhHHHHHHhhccCCCCcEEEEeecchhhhc--------------cCChhhhHHHHHH
Q 040680 82 --D-RKKYLLVLDDVWIENC-DEWLKLETLLRNSAGGSNIIVATRSERVAR--------------GLSKGQSWSLFIL 141 (459)
Q Consensus 82 --~-~~~~LlvlDdv~~~~~-~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~--------------~l~~~ea~~Lf~~ 141 (459)
. +++.+||+-=-...+. .-+.+... +.-...-|+|++----+.+.. .|+.++|.+.-..
T Consensus 356 ~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 356 KKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 2 5666766653321110 11122111 222334567776544333322 7888888776543
No 181
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0083 Score=61.51 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEee-cchhhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVAT-RSERVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++..........+...+......+.+|++| ....+.. +++.++..+.+...+...+..
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 456688999997766566667777666544455555444 3332222 678888888777766433321
Q ss_pred CCCchHHHHHHHHHhhcCCChH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL 171 (459)
. -.+.+..|++.++|.+.
T Consensus 198 i----~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 198 Y----EDEALRLIARAAEGGMR 215 (559)
T ss_pred C----CHHHHHHHHHHcCCCHH
Confidence 1 12456778888888764
No 182
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=3.1e-06 Score=84.63 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=99.2
Q ss_pred ccccCCCccceEeecCCCCccccCccccccc-CCCeeccCCCccccccccccccC--------CCCCcch--------HH
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPNSVSKLL-NLETPDCNGCRSLAELPRILEGC--------GHTDVDV--------EA 331 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~~~~--------~~~~~~~--------~~ 331 (459)
|-+|..++.|+.|.++++.+.. -.++..+. .|++|...+ ++..+-..|..| .|+..-. ..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 5567788899999999998775 22333333 577776553 355555444322 2655211 34
Q ss_pred HhhccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc
Q 040680 332 LLDDLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR 411 (459)
Q Consensus 332 ~~~~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 411 (459)
+-+.++-++.|+.|+++.| .......+..+++|++|+|+. +.+..+|.-.-. .+ .|+.|+|+| +.++++...
T Consensus 179 mD~SLqll~ale~LnLshN--k~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~---gc-~L~~L~lrn-N~l~tL~gi 250 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHN--KFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMV---GC-KLQLLNLRN-NALTTLRGI 250 (1096)
T ss_pred HHHHHHHHHHhhhhccchh--hhhhhHHHHhccccccccccc-chhccccccchh---hh-hheeeeecc-cHHHhhhhH
Confidence 4556677789999999999 455555678899999999997 467766642211 22 389999998 467666533
Q ss_pred cccCCCCCCcCCCCCCCCCccceeeecCCCCCCC
Q 040680 412 IDNDADGSKIDMIEPPSFPCLSELDISGCPKLIL 445 (459)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 445 (459)
. +|.+|+.||+++| .+..
T Consensus 251 -e--------------~LksL~~LDlsyN-ll~~ 268 (1096)
T KOG1859|consen 251 -E--------------NLKSLYGLDLSYN-LLSE 268 (1096)
T ss_pred -H--------------hhhhhhccchhHh-hhhc
Confidence 2 6888888888887 3443
No 183
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.40 E-value=0.00099 Score=57.67 Aligned_cols=116 Identities=11% Similarity=0.016 Sum_probs=62.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcc--cc------------CC-ccC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAY--RE------------FS-KHD 69 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~------------~~-~~~ 69 (459)
-.+++|.|..|+|||||++.++... ....+.++++... ........-+.+.. ++ .. -..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~---~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGVP---VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCEE---HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4689999999999999999999832 2223445543221 11111111111110 00 00 011
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 70 LNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 70 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
-+...-.+.+.+..++-++++|.... .|....+.+...+.....+..||++|.+...
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 12222334455566777899998754 2334444555555443346788888887643
No 184
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.39 E-value=0.00028 Score=66.36 Aligned_cols=84 Identities=11% Similarity=0.002 Sum_probs=54.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-----cCCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-----EFSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 77 (459)
|.-+++-|+|++|+||||||.+++. ..+..-..++|++....++.. .+++++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 5678999999999999999999887 344444578899877766653 23333211 11223445555555
Q ss_pred HhhcCC-ceEEEEEeCC
Q 040680 78 HQKIDR-KKYLLVLDDV 93 (459)
Q Consensus 78 ~~~l~~-~~~LlvlDdv 93 (459)
....+. .--++|+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 444433 4558999987
No 185
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00018 Score=59.03 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhCCcccccC-CC-eEEEE
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYNDETVKNH-FD-LRIWM 41 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~-~~~wv 41 (459)
|++..--|.|.||+|+||||++..+++ +.++. |. +.+|.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 678888999999999999999999998 45443 54 44443
No 186
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.38 E-value=0.00046 Score=64.83 Aligned_cols=85 Identities=9% Similarity=-0.010 Sum_probs=54.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-----cCCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-----EFSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 77 (459)
|.-+++-|+|++|+||||||.+++. ..+..-..++|++.-..++.. .+++++.. .......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 5578999999999999999999887 344444567899877665543 23333321 12223445555555
Q ss_pred HhhcC-CceEEEEEeCCC
Q 040680 78 HQKID-RKKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l~-~~~~LlvlDdv~ 94 (459)
....+ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 345689999973
No 187
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0091 Score=56.47 Aligned_cols=80 Identities=8% Similarity=-0.025 Sum_probs=56.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++=++|+|+++.........+...+..-..++.+|++|.+.. +.. +++.+++.+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 4555788999988777777888888887777777777776643 322 7888888888876531
Q ss_pred CCCchHHHHHHHHHhhcCCChH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPL 171 (459)
. + ...+...+..++|.|.
T Consensus 181 ~--~--~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 181 A--E--ISEILTALRINYGRPL 198 (325)
T ss_pred c--C--hHHHHHHHHHcCCCHH
Confidence 1 1 1125566788999996
No 188
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.36 E-value=0.0029 Score=54.85 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=66.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC--cccHHHH------HHHHHHHhcccc-----CCc-cCH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD--IFYHKAM------LEKIIAFVAYRE-----FSK-HDL 70 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~~-----~~~-~~~ 70 (459)
-.+++|.|..|.|||||++.++.. . ....+.++++..+ ..+.... .-++++.++... ... ..-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 468999999999999999999983 2 2344555553211 1111111 112344443221 111 112
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCC-C-CcEEEEeecchhh
Q 040680 71 NKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSA-G-GSNIIVATRSERV 126 (459)
Q Consensus 71 ~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~iiiTtr~~~~ 126 (459)
+...-.+.+.+...+-++++|.-.. .|....+.+...+.... . +..||++|.+...
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2223334555666777899998743 23344555555554432 2 6788888887643
No 189
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.35 E-value=0.0014 Score=59.58 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=52.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc------------------
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE------------------ 64 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 64 (459)
|..+++.|.|.+|+|||++|.+++.. ...+=..++|++.... ...+.+++ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 56789999999999999999999763 2223357888888654 33343332 2222100
Q ss_pred --CCccCHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 040680 65 --FSKHDLNKLQEVHHQKIDR-KKYLLVLDDVW 94 (459)
Q Consensus 65 --~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 94 (459)
....+.+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555555555543 45588999874
No 190
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.0021 Score=55.28 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=62.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhc--cccCC----------ccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF--YHKAMLEKIIAFVA--YREFS----------KHD 69 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~--~~~~~----------~~~ 69 (459)
.-.+++|.|..|.|||||.+.++.- . ....+.+++...... .... ..+.+. .++.. -+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence 3568999999999999999999983 2 223455554321110 1111 111111 00000 001
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 70 LNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 70 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
-+...-.+.+.+..++-++++|+-.. .|......+...+.....+..||++|.+...
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 11122234455666777999998653 2334455555555544445778888887643
No 191
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.32 E-value=0.0032 Score=52.35 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=59.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
-.+++|.|..|.|||||++.++... ....+.+|++... .+..- .+-+.-+...-.+.+.+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999998832 2234555553210 00000 00111122223344555566
Q ss_pred eEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 85 KYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 85 ~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
+-++++|+-.. .|......+...+... +..||++|.+...
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~ 129 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYF 129 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence 67899998743 3445555666666544 3468888876543
No 192
>PRK09354 recA recombinase A; Provisional
Probab=97.31 E-value=0.00068 Score=64.26 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=55.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-----cCCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-----EFSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 77 (459)
|.-+++-|+|++|+||||||.+++. ..+..-..++||+.-..++.. .+++++.. ..+....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 5678999999999999999999987 344444678899887776653 23333321 12223445555555
Q ss_pred HhhcCC-ceEEEEEeCC
Q 040680 78 HQKIDR-KKYLLVLDDV 93 (459)
Q Consensus 78 ~~~l~~-~~~LlvlDdv 93 (459)
...++. ..-++|+|.+
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 444433 4558999997
No 193
>PHA00729 NTP-binding motif containing protein
Probab=97.30 E-value=0.00083 Score=59.50 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=20.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..|.|+|.+|+||||||..+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999988
No 194
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.29 E-value=0.0014 Score=54.96 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=62.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc---ccHHHHHHHHHHHhcc-------cc--CCccCH---
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI---FYHKAMLEKIIAFVAY-------RE--FSKHDL--- 70 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~-------~~--~~~~~~--- 70 (459)
..|-|++..|.||||+|...+- +...+=..+.++-+-.. ..-.. +++.+.. .. ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~----~l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELK----ALERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHH----HHHhCCCcEEEECCCCCccCCCChHHH
Confidence 4678888899999999998887 33333223444332222 12222 2333210 00 000111
Q ss_pred ----HHHHHHHHhhcCC-ceEEEEEeCCCCC---ChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 71 ----NKLQEVHHQKIDR-KKYLLVLDDVWIE---NCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 71 ----~~~~~~l~~~l~~-~~~LlvlDdv~~~---~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
....+..++.+.. +-=|+|||.+-.. .....+.+...+.....+..+|+|.|+.
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122223344433 3449999998321 2235567788888888888999999975
No 195
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0028 Score=60.68 Aligned_cols=113 Identities=6% Similarity=0.008 Sum_probs=60.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
+++|+++|++|+||||++..++. ....+-..+..++..... .....+......++.+-....+.+.+.+.+...-..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 57999999999999999999987 333332244455543321 222333344444443332234555555544433211
Q ss_pred -ceEEEEEeCCCCCC--hhhHHHHHHhhccCCCCcEEEE
Q 040680 84 -KKYLLVLDDVWIEN--CDEWLKLETLLRNSAGGSNIIV 119 (459)
Q Consensus 84 -~~~LlvlDdv~~~~--~~~~~~l~~~l~~~~~gs~iii 119 (459)
+.=++++|-.-... ......+...+....+...+++
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 23477888774432 2334555555543333333444
No 196
>CHL00176 ftsH cell division protein; Validated
Probab=97.28 E-value=0.004 Score=64.51 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=72.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.++-|.++|++|+|||++|+.+++. .... |+.++.. .+.. ... ..........+.+....
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~f~~----~~~-----g~~~~~vr~lF~~A~~~ 274 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----EFVE----MFV-----GVGAARVRDLFKKAKEN 274 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----HHHH----Hhh-----hhhHHHHHHHHHHHhcC
Confidence 3566899999999999999999983 3222 2322211 1100 000 00112233334444556
Q ss_pred ceEEEEEeCCCCCC----------hhhHHH-HHHhh---cc--CCCCcEEEEeecchhhhc----------------cCC
Q 040680 84 KKYLLVLDDVWIEN----------CDEWLK-LETLL---RN--SAGGSNIIVATRSERVAR----------------GLS 131 (459)
Q Consensus 84 ~~~LlvlDdv~~~~----------~~~~~~-l~~~l---~~--~~~gs~iiiTtr~~~~~~----------------~l~ 131 (459)
.+++|++|+++... .....+ +...+ .. ...+..||.||....... ..+
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd 354 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD 354 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence 78999999995320 111212 22222 11 124555666665533221 456
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCC
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVG 168 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 168 (459)
.++-.++++.++..... ........+++.+.|
T Consensus 355 ~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 355 REGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 67777777776643211 112234567777776
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.28 E-value=0.0004 Score=60.80 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=56.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC----Ccc-----cHHHH----HHHHHHHhccccCCccCHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS----DIF-----YHKAM----LEKIIAFVAYREFSKHDLN 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~----~~~-----~~~~~----~~~i~~~l~~~~~~~~~~~ 71 (459)
.++|.+.|++|.|||.||.+.+-+.-....|+.++++.-. +.. +..+- ...+...+..- ......+
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~-~~~~~~~ 97 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEEL-FGKEKLE 97 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTT-S-TTCHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHH-hChHhHH
Confidence 4689999999999999999998764445788888877421 110 11111 11111111110 1122222
Q ss_pred HHHHHH------HhhcCCc---eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 72 KLQEVH------HQKIDRK---KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 72 ~~~~~l------~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
.....- ...++|. ..++|+|.+.+... .++...+-..+.|||+|++=-..
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEEEE---
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEEecCce
Confidence 222110 1334453 57899999966433 45555566678899999986443
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.28 E-value=0.0042 Score=57.37 Aligned_cols=42 Identities=12% Similarity=-0.035 Sum_probs=27.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKA 51 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 51 (459)
.+-|.|.|.+|+|||++|+.+++ ..... .++++.....+...
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~d 62 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSD 62 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHH
Confidence 34577999999999999999987 33322 34455444433333
No 199
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.27 E-value=0.0002 Score=57.65 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=20.0
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
||.|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.27 E-value=0.0031 Score=53.57 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=63.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc------------------cCCCeEEEEEeCCc---ccHHHHHHHHHHHhccc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK------------------NHFDLRIWMCISDI---FYHKAMLEKIIAFVAYR 63 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 63 (459)
+..+.++|+.|+||+++|..+++..--. ...+.+.|+.-... ..+..+ +++...+...
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~i-r~i~~~~~~~ 97 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQI-REIIEFLSLS 97 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHH-HHHHHHCTSS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHH-HHHHHHHHHH
Confidence 5567899999999999999988731111 12334444433222 112111 1222222111
Q ss_pred cCCccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh
Q 040680 64 EFSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER 125 (459)
Q Consensus 64 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 125 (459)
-..+++=++|+|+++....+....+...+.....++.+|++|++..
T Consensus 98 ----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 98 ----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp -----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 0123455899999988877888889999988888999999998754
No 201
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.02 Score=54.19 Aligned_cols=162 Identities=13% Similarity=0.078 Sum_probs=87.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccc-------------ccCCCeEEEEEeCCcccHHHHHHHHHHHhc--cccCCccC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETV-------------KNHFDLRIWMCISDIFYHKAMLEKIIAFVA--YREFSKHD 69 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~ 69 (459)
++...++|+.|+||+++|..+++..-- ...++...|+.-....+-...-.+-+...+ ........
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 567889999999999999888763111 122345566542110000000001111111 00011111
Q ss_pred HHHHHHHHHhh-----cCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-hhhhc------------cCC
Q 040680 70 LNKLQEVHHQK-----IDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-ERVAR------------GLS 131 (459)
Q Consensus 70 ~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~~~~------------~l~ 131 (459)
.++. +.+.+. ..+++-++|+|++..........+...+..-. .+.+|++|.+ ..+.. +++
T Consensus 106 id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~ 183 (314)
T PRK07399 106 LEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLS 183 (314)
T ss_pred HHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCC
Confidence 2222 222222 23456689999997776667777877776555 4455555544 33332 789
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHH
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRT 175 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 175 (459)
.++..+.+.+...... .. .....++..++|.|..+..
T Consensus 184 ~~~~~~~L~~~~~~~~-----~~--~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 184 DEQLEQVLKRLGDEEI-----LN--INFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHHHhhcccc-----ch--hHHHHHHHHcCCCHHHHHH
Confidence 9999998887642111 11 1135788899999965443
No 202
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.27 E-value=0.00084 Score=61.59 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC----CCeEEEEEeCCcccHHHHHHHHHHHh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH----FDLRIWMCISDIFYHKAMLEKIIAFV 60 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 60 (459)
...+.=|+|.+|+|||+||.+++-...+... =..++|++-...+...++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4567889999999999999988753233221 2369999988888777765 466554
No 203
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.27 E-value=0.0018 Score=55.08 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=64.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF--YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
-.+++|.|..|.|||||.+.++.. .....+.+++...+.. +.... ..+.+..- .+-..-+...-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDA---RRAGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHH---HhcCeEEE-EecCHHHHHHHHHHHHHh
Confidence 468999999999999999999873 2234566665422111 11111 11111110 111222233334455566
Q ss_pred CceEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchh
Q 040680 83 RKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSER 125 (459)
Q Consensus 83 ~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~ 125 (459)
.++-++++|+-.. .|......+...+... ..|..||++|.+..
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 6777889998753 2334555555555433 34678888888764
No 204
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.01 Score=56.57 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=56.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++=++|+|+++.........+...+..-..++.+|++|.+.. +.. +++.+++.+.+....+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-----
Confidence 4556889999987776777788888877777777777776533 332 6778888777754321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai 173 (459)
. + .+.+..++..++|.|...
T Consensus 182 ~--~--~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 M--S--QDALLAALRLSAGAPGAA 201 (334)
T ss_pred C--C--HHHHHHHHHHcCCCHHHH
Confidence 1 1 123667889999999633
No 205
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0053 Score=58.67 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHH
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFIL 141 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~ 141 (459)
+.+=++|+|++..........+...+..-..++.+|++|.+.. +.. +++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 4455789999977666677778888887777787777776643 221 7788888777754
No 206
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0048 Score=55.71 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=77.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
--|.++|++|.||||||.-+++ +....+.. ..+.... ...++...+-. +...
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~----tsGp~le--------------------K~gDlaaiLt~-Le~~- 104 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI----TSGPALE--------------------KPGDLAAILTN-LEEG- 104 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe----ccccccc--------------------ChhhHHHHHhc-CCcC-
Confidence 4578999999999999999999 44433311 1111111 11112222211 2222
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccC--------CCCcE-----------EEEeecchhhhc-------------cCChh
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRNS--------AGGSN-----------IIVATRSERVAR-------------GLSKG 133 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~~--------~~gs~-----------iiiTtr~~~~~~-------------~l~~~ 133 (459)
=.+.+|.+.......-+.+......+ ++++| |=-|||.-.+.. -.+.+
T Consensus 105 DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~ 184 (332)
T COG2255 105 DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVE 184 (332)
T ss_pred CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHH
Confidence 24556776544322222222222211 33333 234777655544 56888
Q ss_pred hhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 040680 134 QSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL 180 (459)
Q Consensus 134 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 180 (459)
|-.+...+.+..-.. +-.++.+.+|+++..|-|--..-+-..+
T Consensus 185 eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 185 ELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 888888888743332 2234568899999999996544444333
No 207
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0062 Score=58.76 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=98.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
+..-+-|.|-+|.|||.+...++.+......-..+++++...-.....+...|+..+...........+..+.+.+...+
T Consensus 174 t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q 253 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQ 253 (529)
T ss_pred cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Confidence 35567899999999999999999853222222356788777666777788888877732222222224455556555554
Q ss_pred c--eEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEEee-cch-hhh--------------------ccCChhhhHHH
Q 040680 84 K--KYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIVAT-RSE-RVA--------------------RGLSKGQSWSL 138 (459)
Q Consensus 84 ~--~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTt-r~~-~~~--------------------~~l~~~ea~~L 138 (459)
. -+++|+|..+.-....-..+...|.+. -+++++|+.- -+. +.. .+.+.++..++
T Consensus 254 ~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~I 333 (529)
T KOG2227|consen 254 SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEI 333 (529)
T ss_pred ccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHH
Confidence 3 588999988432111112222233222 2455544421 111 111 08899999999
Q ss_pred HHHHHccCCCCCC-CchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 040680 139 FILMAFEQGVEPR-GSRLVEIGKDIVEKCVGVPLAIRTVGRLL 180 (459)
Q Consensus 139 f~~~~~~~~~~~~-~~~~~~~~~~i~~~~~glPLai~~~~~~l 180 (459)
+....-....... ...++-.|++++...|.+--|+.+.-+.+
T Consensus 334 l~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 334 LQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 9888643322111 12333344445444455556666555444
No 208
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.22 E-value=0.0053 Score=52.42 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=60.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc-cC--CC---eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK-NH--FD---LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHH 78 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~--f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 78 (459)
-.+++|.|..|.|||||++.++...... +. ++ .+.++.-........+.+.+... ....-+.-+...-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 4689999999999999999998742211 10 11 12222211111111222222210 1111222233333445
Q ss_pred hhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecchh
Q 040680 79 QKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRSER 125 (459)
Q Consensus 79 ~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 125 (459)
+.+..++-++++|.-.. .|......+...+... +..||++|.+..
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 55666677889998643 2334445555555543 456888887754
No 209
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.22 E-value=0.00086 Score=63.29 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=26.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
.+++.++|||++|+|||.+|+++++ +....|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 4689999999999999999999999 554443
No 210
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0019 Score=61.73 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=65.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccccc---------------------CCCeEEEEEeCCccc---HHHHHHHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKN---------------------HFDLRIWMCISDIFY---HKAMLEKIIAFV 60 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~l 60 (459)
+..+.++|+.|+||||+|..+++. +.. .++.+..++.++... ..+..+++.+..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHh
Confidence 346889999999999999999883 221 123455555554433 233334443333
Q ss_pred ccccCCccCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 61 AYREFSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
..... .++.-++++|+++....+....+...+......+.+|++|.+.
T Consensus 102 ~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 102 SESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred ccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 21110 3456789999997766666666777777777788888888743
No 211
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0014 Score=60.12 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcc--cccCCCeEEEEEe
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDET--VKNHFDLRIWMCI 43 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~~~f~~~~wv~~ 43 (459)
.|+|.++|++|.|||+|++++++.-. ..+.|.....+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 58999999999999999999999743 3456655555544
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0047 Score=61.41 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=47.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
++|=|.+||++|+|||.||+++++ +..-.| +.++.. +|...+ .....+.+.+.+.+.-..
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp--------eivSGv-----SGESEkkiRelF~~A~~~ 281 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP--------EIVSGV-----SGESEKKIRELFDQAKSN 281 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch--------hhhccc-----CcccHHHHHHHHHHHhcc
Confidence 456677999999999999999999 444333 333322 222222 223334444555566667
Q ss_pred ceEEEEEeCCCC
Q 040680 84 KKYLLVLDDVWI 95 (459)
Q Consensus 84 ~~~LlvlDdv~~ 95 (459)
-++++++|+++-
T Consensus 282 aPcivFiDeIDA 293 (802)
T KOG0733|consen 282 APCIVFIDEIDA 293 (802)
T ss_pred CCeEEEeecccc
Confidence 899999999854
No 213
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.20 E-value=0.00017 Score=59.60 Aligned_cols=89 Identities=21% Similarity=0.147 Sum_probs=46.5
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCceEE
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKKYL 87 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 87 (459)
|.|+|.+|+|||+||+.+++ .... ...-+.++...+..++....--.-......... +...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~---l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP---LVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C---CCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeeccccccccccc---ccccc-----cceeE
Confidence 67999999999999999998 4422 233345665555555442211100000000000 00000 17889
Q ss_pred EEEeCCCCCChhhHHHHHHhhc
Q 040680 88 LVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 88 lvlDdv~~~~~~~~~~l~~~l~ 109 (459)
+|+|++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997655444455555443
No 214
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0026 Score=61.39 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=72.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
...+-|+|..|.|||.|++++++ ......+ .+++++ .+.....++..+.. .....+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-
Confidence 56788999999999999999999 6665555 344442 23344444443321 1223334433
Q ss_pred CceEEEEEeCCCCCCh-hh-HHHHHHhhccC-CCCcEEEEeecchhhhc--------------------cCChhhhHHHH
Q 040680 83 RKKYLLVLDDVWIENC-DE-WLKLETLLRNS-AGGSNIIVATRSERVAR--------------------GLSKGQSWSLF 139 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~-~~-~~~l~~~l~~~-~~gs~iiiTtr~~~~~~--------------------~l~~~ea~~Lf 139 (459)
.-=++++||++--.. +. -+.+...+... ..|-.||+|++...-.- +.+.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 223888999964211 11 22333333322 34448888886521110 67778888888
Q ss_pred HHHHccCCC
Q 040680 140 ILMAFEQGV 148 (459)
Q Consensus 140 ~~~~~~~~~ 148 (459)
.+.+.....
T Consensus 254 ~kka~~~~~ 262 (408)
T COG0593 254 RKKAEDRGI 262 (408)
T ss_pred HHHHHhcCC
Confidence 776654443
No 215
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.00069 Score=59.72 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=55.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
.+|.|+|+.|+||||++..+.. ....+....++..-........-...+..+ ... ..+.....+.+...++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q---~~v-g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHESKRSLINQ---REV-GLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccCccceeee---ccc-CCCccCHHHHHHHHhcCCc
Confidence 4789999999999999998877 344343444443222110000000011111 011 1112234455666666667
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
=.+++|.+.+. +... ..+.....|-.++.|+...
T Consensus 76 d~ii~gEird~--e~~~---~~l~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 76 DVILVGEMRDL--ETIR---LALTAAETGHLVMSTLHTN 109 (198)
T ss_pred CEEEEcCCCCH--HHHH---HHHHHHHcCCEEEEEecCC
Confidence 79999999532 2222 2222233565677776544
No 216
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.02 Score=54.67 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=54.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch-hhhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE-RVAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++=++|+|+++.........+...+..-.+++.+|++|.+. .+.. +++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 344578899998887788888888888777787776666653 3332 778888888886531 1
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
.. ...++..++|.|....
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAAL 223 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHH
Confidence 11 2235777899997443
No 217
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.18 E-value=0.00087 Score=61.31 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=51.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCC-eEEEEEeCCcc-cHHHHHHHHHHHhccc------cCCcc-CHH-----
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFD-LRIWMCISDIF-YHKAMLEKIIAFVAYR------EFSKH-DLN----- 71 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~-~~~----- 71 (459)
+-++|.|.+|+|||+||.++++ .+..+|+ .++++-+++.. ...++.+++...=... ..... ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999999 5655664 45555555443 4555555554321000 01111 111
Q ss_pred HHHHHHHhhc---CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI---DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l---~~~~~LlvlDdv 93 (459)
...-.+.+++ .++++|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112233444 378999999999
No 218
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0082 Score=54.13 Aligned_cols=124 Identities=13% Similarity=0.153 Sum_probs=69.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcc-----cc------cCC---CeEEEEEeCC----cc--cH---------------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDET-----VK------NHF---DLRIWMCISD----IF--YH--------------- 49 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~-----~~------~~f---~~~~wv~~~~----~~--~~--------------- 49 (459)
-.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.-.. .+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999987211 10 001 2355553111 00 01
Q ss_pred -------HHHHHHHHHHhccccCC------ccCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC-CCC
Q 040680 50 -------KAMLEKIIAFVAYREFS------KHDLNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGG 114 (459)
Q Consensus 50 -------~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~g 114 (459)
.+...+.+++++..+.. -+.-+...-.+.+.|..++=+++||.-.. .|...-..+...+... ..|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 23444555555432211 12223334456688888899999997432 1223333344444322 238
Q ss_pred cEEEEeecchhhhc
Q 040680 115 SNIIVATRSERVAR 128 (459)
Q Consensus 115 s~iiiTtr~~~~~~ 128 (459)
+.|+++|.|-....
T Consensus 190 ~tIl~vtHDL~~v~ 203 (254)
T COG1121 190 KTVLMVTHDLGLVM 203 (254)
T ss_pred CEEEEEeCCcHHhH
Confidence 99999999865543
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.17 E-value=0.0021 Score=55.28 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=61.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhcc--ccCC----------ccCH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF--YHKAMLEKIIAFVAY--REFS----------KHDL 70 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~--~~~~----------~~~~ 70 (459)
-.+++|.|..|.|||||++.++.. . ....+.++++..+.. .... ..+.+.. ++.. -+.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL--L-RPTSGRVRLDGADISQWDPNE----LGDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--c-CCCCCeEEECCEEcccCCHHH----HHhheEEECCCCccccCcHHHHCcCHH
Confidence 468999999999999999999973 2 223444444321111 1111 1111110 1100 0111
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchhh
Q 040680 71 NKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSERV 126 (459)
Q Consensus 71 ~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~~ 126 (459)
+...-.+.+.+..++-++++|+-.. .|......+...+... ..|..||++|.+...
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 2222334455556667899998753 2334444455555432 246778888887643
No 220
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0026 Score=61.69 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++.++|++|+||||+|..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 221
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.16 E-value=9.1e-05 Score=73.43 Aligned_cols=108 Identities=34% Similarity=0.338 Sum_probs=84.3
Q ss_pred cccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
..++.+++|.+|++..|.|..+...+..+++|++|++++|. +..+. .+..++.|+.|++++
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~------------------~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE------------------GLSTLTLLKELNLSG 149 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc------------------chhhccchhhheecc
Confidence 44788899999999999999888768889999999999955 66664 556677899999999
Q ss_pred ecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 350 FGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 350 ~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
| ....++.+..+++|+.++++++ .+..+... + ...+.+|+.+.+.++
T Consensus 150 N--~i~~~~~~~~l~~L~~l~l~~n-~i~~ie~~--~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 150 N--LISDISGLESLKSLKLLDLSYN-RIVDIEND--E-LSELISLEELDLGGN 196 (414)
T ss_pred C--cchhccCCccchhhhcccCCcc-hhhhhhhh--h-hhhccchHHHhccCC
Confidence 9 6777888888999999999985 34444431 0 126778888888874
No 222
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0022 Score=61.16 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=54.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC-Ce-EEEEEeCCc-ccHHHHHHHHHHHhccccCCccCHH-----HHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF-DL-RIWMCISDI-FYHKAMLEKIIAFVAYREFSKHDLN-----KLQEVH 77 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~l 77 (459)
+-+.|+|.+|+|||||++.+++ .+..+. +. ++|+-+.+. ..+.++.+.+...+........... ......
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999988 444333 33 356555543 4677888888776654322111111 111122
Q ss_pred Hhhc--CCceEEEEEeCC
Q 040680 78 HQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 78 ~~~l--~~~~~LlvlDdv 93 (459)
.+++ .+++++||+|++
T Consensus 212 Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 2222 478999999999
No 223
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=1.2e-05 Score=80.60 Aligned_cols=105 Identities=26% Similarity=0.260 Sum_probs=57.3
Q ss_pred CccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccc-cccCC--CCC--cchHHHhhccCCCCCc
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRI-LEGCG--HTD--VDVEALLDDLKPHKNL 342 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~--~~~--~~~~~~~~~l~~l~~L 342 (459)
+..++.-+..|++|||++|.+...- .+..+++|++|||++|. +..+|.. ...|. ... .+.-.-+.++.+|.+|
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL 256 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSL 256 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHhhhhHHhhhhh
Confidence 3445666777888888888776555 56677788888888744 7777643 11111 000 0111223355556666
Q ss_pred ceEeeeee-cccccCCCCCCCCCCCcEEecCCC
Q 040680 343 RELSIFYF-GVRCQYIPQLEQLPSLKSLTLSWL 374 (459)
Q Consensus 343 ~~L~l~~~-~~~~~~l~~l~~l~~L~~L~l~~~ 374 (459)
+.|++++| -.....+..+..|..|+.|.|.|+
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 66666655 112222333455555666666553
No 224
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.15 E-value=0.0017 Score=60.54 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=47.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
..++|+|+|++|+||||++..++.....+..-..+..++..... .....+....+.++.+.....+..++...+.+ +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 46799999999999999999998732222111345566554322 12223333333333332223344444444443 33
Q ss_pred CceEEEEEeCC
Q 040680 83 RKKYLLVLDDV 93 (459)
Q Consensus 83 ~~~~LlvlDdv 93 (459)
+ .=++++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 225
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.14 E-value=0.00015 Score=71.78 Aligned_cols=81 Identities=33% Similarity=0.379 Sum_probs=66.0
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+..+.+|++|++++|.|+.+.. +..++.|+.|++++|. +..++ .+..+.+|+.+++++|
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~------------------~~~~l~~L~~l~l~~n- 172 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDIS------------------GLESLKSLKLLDLSYN- 172 (414)
T ss_pred hhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhcc------------------CCccchhhhcccCCcc-
Confidence 7789999999999999988764 6788889999999965 66664 4556799999999999
Q ss_pred ccccCCCC--CCCCCCCcEEecCCC
Q 040680 352 VRCQYIPQ--LEQLPSLKSLTLSWL 374 (459)
Q Consensus 352 ~~~~~l~~--l~~l~~L~~L~l~~~ 374 (459)
....+.. ...+.+|+.+.+.++
T Consensus 173 -~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 173 -RIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred -hhhhhhhhhhhhccchHHHhccCC
Confidence 5555555 588899999999874
No 226
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0022 Score=58.94 Aligned_cols=88 Identities=13% Similarity=-0.029 Sum_probs=57.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHH-hccc-cCCccCHHHHHH---HH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAF-VAYR-EFSKHDLNKLQE---VH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~---~l 77 (459)
|+.+++=|+|+.|.||||+|.+++- ..+..-..++|++.-..++...+.+ +... +..- ..+..+.+.... .+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 5678999999999999999999988 4555555899999888887776543 3333 2211 122333333333 33
Q ss_pred HhhcCCceEEEEEeCC
Q 040680 78 HQKIDRKKYLLVLDDV 93 (459)
Q Consensus 78 ~~~l~~~~~LlvlDdv 93 (459)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333333458999998
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.017 Score=54.93 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=38.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHH
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFIL 141 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~ 141 (459)
+=++|+|++...+......+...+.....++.+|++|.+.. +.. +++.+++.+.+..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 33456688877766667777777766556677777877754 222 6778887777754
No 228
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.12 E-value=0.0014 Score=61.82 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=41.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccc----cCCCeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVK----NHFDLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
|+-+++-|+|.+|+|||+||.+++-..... ..=..++|++....++.+++. +++++++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 456889999999999999999887432221 112478999988887777765 4555554
No 229
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.12 E-value=0.0017 Score=55.95 Aligned_cols=108 Identities=10% Similarity=-0.012 Sum_probs=57.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.-.+++|.|..|+|||||++.++.-. ....+.+++......-. .+...-+.-+...-.+.+.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~------------~q~~~LSgGq~qrv~laral~~ 88 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYK------------PQYIDLSGGELQRVAIAAALLR 88 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEE------------cccCCCCHHHHHHHHHHHHHhc
Confidence 35689999999999999999998732 12234443321000000 0000011112223334455556
Q ss_pred ceEEEEEeCCCC-CChhhHHHHHHhhccC-CC-CcEEEEeecchhh
Q 040680 84 KKYLLVLDDVWI-ENCDEWLKLETLLRNS-AG-GSNIIVATRSERV 126 (459)
Q Consensus 84 ~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iiiTtr~~~~ 126 (459)
++-++++|.-.. .|......+...+... .. +..||++|.+...
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 677899998643 2334444444444432 22 3578888877643
No 230
>PRK08233 hypothetical protein; Provisional
Probab=97.11 E-value=0.0017 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+|+|.|.+|+||||+|..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 231
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0023 Score=57.73 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=74.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC-----cccHHHHHHHHHHHhcccc------C-CccCHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD-----IFYHKAMLEKIIAFVAYRE------F-SKHDLNK 72 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~-~~~~~~~ 72 (459)
-.+++|+|-+|+||||+|+.+.. ....-.+.+++...+ .....+...+++..++... + .-..-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45899999999999999999998 333344566665333 1223344566666665332 1 1112222
Q ss_pred HHHHHHhhcCCceEEEEEeCCCCC-ChhhHHHHHHhhccC--CCCcEEEEeecchhhhccCCh
Q 040680 73 LQEVHHQKIDRKKYLLVLDDVWIE-NCDEWLKLETLLRNS--AGGSNIIVATRSERVARGLSK 132 (459)
Q Consensus 73 ~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~~~~l~~ 132 (459)
..-.+.+.+.-++-++|.|..-+. |...-.++...+... ..|...+..|.|-.+.+.+++
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 233456777888899999986432 112223444444332 356677888888777664444
No 232
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.10 E-value=0.0025 Score=68.93 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=59.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc--CCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE--FSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 83 (459)
.++.++|+.|+|||++|+.++. .....-...+.++.+........ .+.++.+. .+-.....+...+++ .
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~~----~~l~g~~~g~~g~~~~g~l~~~v~~---~ 666 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHSV----ARLIGAPPGYVGYEEGGQLTEAVRR---K 666 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccchH----HHhcCCCCCccCcccccHHHHHHHc---C
Confidence 4678999999999999999998 33222233444554433221111 11122111 011111222223322 3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccC-----------CCCcEEEEeecc
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNS-----------AGGSNIIVATRS 123 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 123 (459)
...+++||++...+...+..+...+... ...+-||+||..
T Consensus 667 p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 3458999999888777777777776433 123446777764
No 233
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.09 E-value=0.0036 Score=62.67 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.++-|.++|++|+|||.+|+.+++
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Confidence 4567789999999999999999998
No 234
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.09 E-value=0.001 Score=56.86 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=76.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc--CCcc-CHHHHHHHHHhhcC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE--FSKH-DLNKLQEVHHQKID 82 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~-~~~~~~~~l~~~l~ 82 (459)
.++.|.|.+|.|||++|..++.. ... .++++.-... .-.+..+.|........ .... ...++...+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 36899999999999999999873 211 2344443333 23345555544443221 1111 11123333333233
Q ss_pred CceEEEEEeCCCC-------CCh-hhHHH-HHHhhcc-CCCCcEEEEeecchhhhccCChhhhHHHHHHHHccCCCCCCC
Q 040680 83 RKKYLLVLDDVWI-------ENC-DEWLK-LETLLRN-SAGGSNIIVATRSERVARGLSKGQSWSLFILMAFEQGVEPRG 152 (459)
Q Consensus 83 ~~~~LlvlDdv~~-------~~~-~~~~~-l~~~l~~-~~~gs~iiiTtr~~~~~~~l~~~ea~~Lf~~~~~~~~~~~~~ 152 (459)
+ .-++++|.+-. .+. ..+.. +...+.. ...+..+|+|+..-.. ...+.++..+.|...++.- +
T Consensus 76 ~-~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~-g~vp~~~~~r~~~d~lG~l-----n 148 (170)
T PRK05800 76 P-GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGM-GIVPEYRLGRHFRDIAGRL-----N 148 (170)
T ss_pred C-CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCcc-cccCCCHHHHHHHHHHHHH-----H
Confidence 2 23688888611 010 11111 1112221 2356667777744322 2445566666776665421 2
Q ss_pred chHHHHHHHHHhhcCCChHHH
Q 040680 153 SRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 153 ~~~~~~~~~i~~~~~glPLai 173 (459)
+.+...+..+.....|+|+-+
T Consensus 149 q~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 149 QQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHHHCCEEEEEeCCCcEec
Confidence 444455555555566777543
No 235
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.08 E-value=0.0011 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=31.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccc-cCCCeEEEEEeCCccc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVK-NHFDLRIWMCISDIFY 48 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~wv~~~~~~~ 48 (459)
+..++.+.|+.|+|||.+|+.++. .+. ......+-++.+....
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 346788999999999999999998 555 4555666666655443
No 236
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.08 E-value=0.0089 Score=55.59 Aligned_cols=53 Identities=11% Similarity=0.012 Sum_probs=36.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAF 59 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 59 (459)
.-.++.|.|.+|+|||++|.+++.+.. ..+-..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 356889999999999999999987422 221346888887653 34445444444
No 237
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.07 E-value=0.0057 Score=60.27 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=51.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccccCC---ccCHHHHHHHHHh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYREFS---KHDLNKLQEVHHQ 79 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 79 (459)
.+.+|.++|..|+||||.|..++. .....-..+..++.... ....+.+..++.+++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 367999999999999999999987 44433224444544322 22344556666666543221 2233333333333
Q ss_pred hcCCceEEEEEeCCCC
Q 040680 80 KIDRKKYLLVLDDVWI 95 (459)
Q Consensus 80 ~l~~~~~LlvlDdv~~ 95 (459)
...+. -++|+|-.-.
T Consensus 172 ~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 172 KFKKA-DVIIVDTAGR 186 (437)
T ss_pred HhhcC-CEEEEECCCc
Confidence 33443 5788998843
No 238
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0057 Score=59.30 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc--cCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK--NHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI 81 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 81 (459)
+++|.++|+.|+||||.+..++...... .+-..+..++..... .....++..++.++.+-....+.++....+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 5799999999999999999888732211 122345555554322 223335555555554433334445555555443
Q ss_pred CCceEEEEEeCCCCCCh--hhHHHHHHhhccCCCC-cEEEEe
Q 040680 82 DRKKYLLVLDDVWIENC--DEWLKLETLLRNSAGG-SNIIVA 120 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~--~~~~~l~~~l~~~~~g-s~iiiT 120 (459)
...-++++|-+-.... .....+...+....+. -.++|-
T Consensus 253 -~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVl 293 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAV 293 (388)
T ss_pred -CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3455888998855332 2334555555544333 244443
No 239
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.06 E-value=0.0046 Score=53.17 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=61.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC---cccccC---C--CeEEEEEeCCcccHHHHHHHHHHHhccccC----C--ccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND---ETVKNH---F--DLRIWMCISDIFYHKAMLEKIIAFVAYREF----S--KHD 69 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~--~~~ 69 (459)
.-.+++|+|+.|+|||||.+.+..+ ..+... | ..+.|+. + .+.+..++.... . .-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 3568999999999999999988632 111111 1 0133321 1 344555543211 1 111
Q ss_pred -HHHHHHHHHhhcCCc--eEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchhh
Q 040680 70 -LNKLQEVHHQKIDRK--KYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSERV 126 (459)
Q Consensus 70 -~~~~~~~l~~~l~~~--~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~~ 126 (459)
-+...-.+.+.+..+ +-++++|.-.. .+......+...+... ..|..||++|.+...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 122223344555555 66888898643 2334445555555432 246778888887643
No 240
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0068 Score=57.91 Aligned_cols=104 Identities=9% Similarity=-0.024 Sum_probs=60.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc-
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI- 81 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 81 (459)
..++++++|+.|+||||++..++.. ...+-..+.+++..... .....++...+.++.+.....+.+++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4789999999999999999999873 33222356667654432 2344555555555543333345555555444322
Q ss_pred CCceEEEEEeCCCCC--ChhhHHHHHHhhc
Q 040680 82 DRKKYLLVLDDVWIE--NCDEWLKLETLLR 109 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~--~~~~~~~l~~~l~ 109 (459)
.+..=++++|-.-.. +......+.....
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 133457888987542 2233444444443
No 241
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00095 Score=58.43 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=24.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
+.+|||.|.+|+||||+|+.++. .+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 57999999999999999999998 55544
No 242
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.05 E-value=0.01 Score=50.44 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=67.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC----------------------------------------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS---------------------------------------- 44 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~---------------------------------------- 44 (459)
-..+-++|++|.||||+.+.+|..++.. .+.+|+...
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4567899999999999999999853321 233343210
Q ss_pred -----CcccHHHHHHHHHHHhcccc------CCccCHHHHHHHHHhhcCCceEEEEEeCCC-CCChhhHHHHHHhhc-cC
Q 040680 45 -----DIFYHKAMLEKIIAFVAYRE------FSKHDLNKLQEVHHQKIDRKKYLLVLDDVW-IENCDEWLKLETLLR-NS 111 (459)
Q Consensus 45 -----~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~-~~~~~~~~~l~~~l~-~~ 111 (459)
....+.+-....+..++..+ ..-+.-++..-.+.+.+-+++-+|+-|.=- +.|++....+...|. -.
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 01122233333444443221 111223334445666677788888888421 112233333444444 34
Q ss_pred CCCcEEEEeecchhhhc
Q 040680 112 AGGSNIIVATRSERVAR 128 (459)
Q Consensus 112 ~~gs~iiiTtr~~~~~~ 128 (459)
..|+.|+++|.+..+..
T Consensus 185 r~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 185 RLGTTVLMATHDLELVN 201 (223)
T ss_pred hcCcEEEEEeccHHHHH
Confidence 68999999999987654
No 243
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.0029 Score=54.49 Aligned_cols=117 Identities=17% Similarity=0.093 Sum_probs=62.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhc--cccC---C---------ccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVA--YREF---S---------KHD 69 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~---~---------~~~ 69 (459)
.-.+++|+|..|.|||||++.++... ....+.++++........ ....+.+. .++. . -..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34689999999999999999998832 223455554321111100 01111111 0000 0 011
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchhh
Q 040680 70 LNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSERV 126 (459)
Q Consensus 70 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~~ 126 (459)
-+...-.+.+.+..++-++++|+-.. .|......+...+... ..|..||++|.+...
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 11222345566667778999998743 2334444555555433 236778888887643
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.04 E-value=0.008 Score=59.35 Aligned_cols=103 Identities=11% Similarity=0.028 Sum_probs=55.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCccc-HHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFY-HKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.+++.++|++|+||||++..++........-..+..++...... ....+....+.++.+.....+.++....+.+ +.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hCC
Confidence 46999999999999999988877311113334566676544221 1222333334344333223344445444443 333
Q ss_pred ceEEEEEeCCCC--CChhhHHHHHHhhc
Q 040680 84 KKYLLVLDDVWI--ENCDEWLKLETLLR 109 (459)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~~~l~~~l~ 109 (459)
.=++++|..-. .+....+.+...+.
T Consensus 300 -~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 300 -CDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred -CCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 45788896633 22233344555554
No 245
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.01 Score=59.11 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=67.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
+.=|.++|++|+|||-||++|+| +..-.| +++... + ++...-+ .........+++.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----E----LlNkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----E----LLNKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----H----HHHHHhh-----hHHHHHHHHHHHhhcCC
Confidence 44578999999999999999999 555554 555443 2 2222111 11112223333444467
Q ss_pred eEEEEEeCCCCC-----Chhh------HHHHHHhhccC--CCCcEEEEeecchhhhc----------------cCChhhh
Q 040680 85 KYLLVLDDVWIE-----NCDE------WLKLETLLRNS--AGGSNIIVATRSERVAR----------------GLSKGQS 135 (459)
Q Consensus 85 ~~LlvlDdv~~~-----~~~~------~~~l~~~l~~~--~~gs~iiiTtr~~~~~~----------------~l~~~ea 135 (459)
++.|.||.++.. +... ..++..-+... ..|.-||-.|...++.. .-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998531 1111 22233333322 34556666665544432 3456677
Q ss_pred HHHHHHHHc
Q 040680 136 WSLFILMAF 144 (459)
Q Consensus 136 ~~Lf~~~~~ 144 (459)
.++++...-
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 777877765
No 246
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.03 E-value=0.0032 Score=53.74 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=77.8
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhc--cccCCccC-HHHHHHHHHhhcCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVA--YREFSKHD-LNKLQEVHHQKIDR 83 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~-~~~~~~~l~~~l~~ 83 (459)
++.|.|.+|.|||++|.+++.. ....++|+.-....+.+ +.+.|.+... ........ ..++.+.+.+ ..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~-~~- 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKE-LD- 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHh-cC-
Confidence 3679999999999999999863 22356777655555442 3334333222 22222221 1233333322 12
Q ss_pred ceEEEEEeCCC--------CCCh---hh-HHHHHHhhcc-CCCCcEEEEeecchhhhccCChhhhHHHHHHHHccCCCCC
Q 040680 84 KKYLLVLDDVW--------IENC---DE-WLKLETLLRN-SAGGSNIIVATRSERVARGLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 84 ~~~LlvlDdv~--------~~~~---~~-~~~l~~~l~~-~~~gs~iiiTtr~~~~~~~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
+.-.+++|.+- ..+. .. -..+...+.. ...+..+|++|.. --......++..+.|...++.-
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnE-vG~g~vp~~~~~r~f~d~lG~l---- 147 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNE-VGLGVVPENALGRRFRDELGRL---- 147 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECC-cCCCCCCCCHHHHHHHHHHHHH----
Confidence 23378899861 1100 11 1112222222 2355667777742 2222556777777777766422
Q ss_pred CCchHHHHHHHHHhhcCCChH
Q 040680 151 RGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 151 ~~~~~~~~~~~i~~~~~glPL 171 (459)
++.+...+.+++....|+|+
T Consensus 148 -nq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 148 -NQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred -HHHHHHHCCEEEEEECCcce
Confidence 24455555566666667775
No 247
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.03 E-value=0.01 Score=60.34 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.++=+.++|++|+|||++|+.+++.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999983
No 248
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0061 Score=58.62 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=51.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCc-ccHHHHHHHHHHHhccccCCccCHHHHHHHHHhh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDI-FYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK 80 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 80 (459)
..++++++|+.|+||||++.+++. .....+ ..+.+++.... ....+.++...+.++.+.....+..+....+. .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-E 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-H
Confidence 367999999999999999999988 332222 34556653332 23444555555555544322223333333333 3
Q ss_pred cCCceEEEEEeCCCC
Q 040680 81 IDRKKYLLVLDDVWI 95 (459)
Q Consensus 81 l~~~~~LlvlDdv~~ 95 (459)
+.++. ++++|..-.
T Consensus 213 l~~~D-lVLIDTaG~ 226 (374)
T PRK14722 213 LRNKH-MVLIDTIGM 226 (374)
T ss_pred hcCCC-EEEEcCCCC
Confidence 44444 566898844
No 249
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00019 Score=63.71 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=69.0
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCc--cccccccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCR--SLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~--~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
...+..|.+|++.+..++.+- .+..|++|++|.++.|+ ....++-. ...+++|++|++++
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-----------------~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-----------------AEKAPNLKVLNLSG 100 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-----------------hhhCCceeEEeecC
Confidence 344556667776666554332 23468899999999873 23333321 23348999999999
Q ss_pred eccc-ccCCCCCCCCCCCcEEecCCCcCcceecc---ccCcCCCCCCCcCEEeecCC
Q 040680 350 FGVR-CQYIPQLEQLPSLKSLTLSWLDALVYICF---SSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 350 ~~~~-~~~l~~l~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~l~~L~~L~L~~~ 402 (459)
|..+ ...++.+.++.+|..|++..|.... +.. ..|. .+++|++|+=..+
T Consensus 101 Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~---ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 101 NKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFL---LLPSLKYLDGCDV 153 (260)
T ss_pred CccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHH---Hhhhhcccccccc
Confidence 9433 4556667888899999999886443 211 1122 6778888766554
No 250
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.0029 Score=68.15 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=51.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-CCccC-HHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-FSKHD-LNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~-~~~~~~~l~~~l~~ 83 (459)
.++.++|+.|+|||++|+.+++ ..-..-...+.++.+..... . .+.+-++.+. ....+ ...+...++ ..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~~-~---~~~~LiG~~pgy~g~~~~g~l~~~v~---~~ 669 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFMEK-H---SVSRLVGAPPGYVGYEEGGYLTEAVR---RR 669 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhhh-h---hHHHHhCCCCcccccchhHHHHHHHH---hC
Confidence 3688999999999999999997 33222223344444332111 1 1111122111 11111 111222222 12
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhcc
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRN 110 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~ 110 (459)
..-+|+||++...+...+..+...+..
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 336999999987777777777766643
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=97.01 E-value=0.0064 Score=57.78 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=59.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccccC---CccCHHHH-HHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYREF---SKHDLNKL-QEVHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l~~ 79 (459)
+++|.++|++|+||||++..++. ....+=..++.+..... ......++.....++.+.. ...+.... ...+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 57999999999999998888886 33332123444443211 1233344555666553321 12232222 222222
Q ss_pred hcCCceEEEEEeCCCCC--ChhhHHHHHHhhccCCCCcEEEEee
Q 040680 80 KIDRKKYLLVLDDVWIE--NCDEWLKLETLLRNSAGGSNIIVAT 121 (459)
Q Consensus 80 ~l~~~~~LlvlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiiTt 121 (459)
.-....=++++|-+-.. +...+..+........+...++|.+
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeec
Confidence 11222238999988554 2334455554444344555555554
No 252
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.01 E-value=0.0024 Score=56.12 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=43.3
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccC-CC---eEEEEEeCCcccHHHHHHHHHHHh----ccccCCccCHHHHHHHHH
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNH-FD---LRIWMCISDIFYHKAMLEKIIAFV----AYREFSKHDLNKLQEVHH 78 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 78 (459)
||+|.|.+|+||||+|+++.. ..... .. ....++............. -... ........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999988 44322 22 2344443333222222111 1111 112234566777777776
Q ss_pred hhcCCceEE
Q 040680 79 QKIDRKKYL 87 (459)
Q Consensus 79 ~~l~~~~~L 87 (459)
...+++.+-
T Consensus 78 ~L~~g~~i~ 86 (194)
T PF00485_consen 78 ALKNGGSIE 86 (194)
T ss_dssp HHHTTSCEE
T ss_pred HHhCCCccc
Confidence 655555543
No 253
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.99 E-value=0.007 Score=52.05 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=44.0
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccc---cCCccCHHHHH-HHHHhhc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYR---EFSKHDLNKLQ-EVHHQKI 81 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 81 (459)
++.+.|++|+||||+++.++. .....-..++.++..... ...+.+...+...+.+ .....+..+.. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987 443332234445433221 2223333333333311 11223333333 3333333
Q ss_pred CCceEEEEEeCCC
Q 040680 82 DRKKYLLVLDDVW 94 (459)
Q Consensus 82 ~~~~~LlvlDdv~ 94 (459)
.+..-++|+|-.-
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 3344356678763
No 254
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.98 E-value=0.002 Score=69.14 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=58.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-cC-CccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-EF-SKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~~~~~~l~~~l~~ 83 (459)
.++.++|+.|+|||.+|+.++. ..-......+-++.+...+.. .+.+-++.+ .. +-.....+.+.+++ .
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~~~----~~~~l~g~~~gyvg~~~~g~L~~~v~~---~ 667 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQEAH----TVSRLKGSPPGYVGYGEGGVLTEAVRR---K 667 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhhhh----hhccccCCCCCcccccccchHHHHHHh---C
Confidence 3688999999999999999887 332222222223322221111 111112211 01 11111123333332 4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCC-----------CCcEEEEeecc
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSA-----------GGSNIIVATRS 123 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~ 123 (459)
...+++||++...+...+..+...+.... ..+-||+||..
T Consensus 668 p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 668 PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 56799999998777666766766665431 44566667654
No 255
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.033 Score=52.59 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=55.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCCC
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
++=++|+|+++.........+...+..-..++.+|++|.+.. +.. +++.+++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-- 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-- 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C--
Confidence 445788999987776777788888887777777777766643 332 678888887775421 1
Q ss_pred CCchHHHHHHHHHhhcCCChHHHHHH
Q 040680 151 RGSRLVEIGKDIVEKCVGVPLAIRTV 176 (459)
Q Consensus 151 ~~~~~~~~~~~i~~~~~glPLai~~~ 176 (459)
. .+..++..++|.|+....+
T Consensus 182 --~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 --T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999866543
No 256
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0037 Score=54.07 Aligned_cols=119 Identities=12% Similarity=0.108 Sum_probs=61.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhc--cccC---Cc----------cC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVA--YREF---SK----------HD 69 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~---~~----------~~ 69 (459)
-.+++|.|..|.|||||++.++.. .....+.+.+...+......-.....+.+. .+.. .. -+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 468999999999999999999873 122345555432111000000001111111 0000 00 11
Q ss_pred -HHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCC-C-CcEEEEeecchhh
Q 040680 70 -LNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSA-G-GSNIIVATRSERV 126 (459)
Q Consensus 70 -~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~iiiTtr~~~~ 126 (459)
-+...-.+.+.+..++=++++|.-.. .|......+...+.... . |..||++|.+...
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 12222334455566677899998643 23444555555554432 2 5678888887643
No 257
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.93 E-value=0.00011 Score=67.73 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=26.1
Q ss_pred cccCCCccceEeecCCCCcc-ccC----cccccccCCCeeccCCCc
Q 040680 270 SSISKLKHLWYLNLPGNGIT-KLP----NSVSKLLNLETPDCNGCR 310 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~-~lp----~~i~~l~~L~~L~l~~~~ 310 (459)
+.+-...+|++||||.|.+. .-+ .-+...+.|+.|.+.+|-
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 44555567888888888654 222 234556778888887764
No 258
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.0027 Score=60.48 Aligned_cols=58 Identities=9% Similarity=-0.002 Sum_probs=41.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccc----cCCCeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVK----NHFDLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
++-++.-|+|.+|+|||+|+.+++-..... ..-..++|++....+..+++.+ ++++++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 456788899999999999999987432221 1124789999988888777654 555554
No 259
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.92 E-value=0.0091 Score=53.91 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=32.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKI 56 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 56 (459)
|...++.|.|.+|+||||+|.+++.. ..+.. ..++|++... +...+.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 45679999999999999999877663 11222 4567777443 334444444
No 260
>PRK04132 replication factor C small subunit; Provisional
Probab=96.91 E-value=0.041 Score=58.55 Aligned_cols=145 Identities=13% Similarity=0.009 Sum_probs=89.8
Q ss_pred CCCCcHHHHHHHHhCCcccccCC-CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCceEEEEEe
Q 040680 13 IGGLGKTAVTQLVYNDETVKNHF-DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKKYLLVLD 91 (459)
Q Consensus 13 ~gGiGKTtLA~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlD 91 (459)
|.++||||+|..++++ ...+.+ ..++-+++++...... .++++......... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~-l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARE-LFGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHh-hhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 7889999999999994 122333 2466677776544432 23333322111000 01244699999
Q ss_pred CCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCCCCCchHHHH
Q 040680 92 DVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVEPRGSRLVEI 158 (459)
Q Consensus 92 dv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 158 (459)
+++.........+...+......+++|+++.+.. +.. +++.++-.+.+.+.+...+... .++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----CHHH
Confidence 9988777777788888776666777777666543 221 7888888887777654322211 2346
Q ss_pred HHHHHhhcCCChH-HHHHHh
Q 040680 159 GKDIVEKCVGVPL-AIRTVG 177 (459)
Q Consensus 159 ~~~i~~~~~glPL-ai~~~~ 177 (459)
...|++.++|.+- |+..+-
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 7889999999874 444443
No 261
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.91 E-value=0.00077 Score=59.94 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=23.9
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|+..+|+|+|++|+||||||+.++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 46689999999999999999999986
No 262
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.88 E-value=0.0024 Score=59.60 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=65.2
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhCC-cccccCCCeEEEE----EeCCc---------ccHHHHHHHHHHHhccc-cCC
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYND-ETVKNHFDLRIWM----CISDI---------FYHKAMLEKIIAFVAYR-EFS 66 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~f~~~~wv----~~~~~---------~~~~~~~~~i~~~l~~~-~~~ 66 (459)
.|--..|.+.|.+|.|||.||.+..-. ...+..|..++-. .+++. ..+.--++.|..-+..- ...
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 455678999999999999998776532 2334555543321 12221 11111122333222210 111
Q ss_pred ccCHHHHHHHHH---------hhcCCc---eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 67 KHDLNKLQEVHH---------QKIDRK---KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 67 ~~~~~~~~~~l~---------~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
......+...+. .+++++ +.++|+|.+.+- .-.++...+-..+.||||+.|---.
T Consensus 322 ~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---TpheikTiltR~G~GsKIVl~gd~a 388 (436)
T COG1875 322 EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---TPHELKTILTRAGEGSKIVLTGDPA 388 (436)
T ss_pred ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---CHHHHHHHHHhccCCCEEEEcCCHH
Confidence 111122222211 223443 568999999653 4456777777889999999987544
No 263
>PRK13695 putative NTPase; Provisional
Probab=96.88 E-value=0.0014 Score=56.49 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=19.6
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 264
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.88 E-value=0.0035 Score=57.74 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=65.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc---ccHHHHHHHHHHHhccccCC-c----cCHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI---FYHKAMLEKIIAFVAYREFS-K----HDLNKLQEVH 77 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~-~----~~~~~~~~~l 77 (459)
+-++|.|+.|+|||||.+.++. .+. ...+.+++...+. ....++... ...+...... . ..........
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRGKKVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECCEEeecchhHHHHHHH-hcccccccccccccccccchHHHHHH
Confidence 4689999999999999999998 333 2244555532111 112222211 1111111100 0 0111111111
Q ss_pred HhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhccCChhhhHHHHHHHHc
Q 040680 78 HQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVARGLSKGQSWSLFILMAF 144 (459)
Q Consensus 78 ~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~~l~~~ea~~Lf~~~~~ 144 (459)
.-.....+-++++|.+-.. +....+...+ ..|..+|+||.+..+........-..|+...+|
T Consensus 188 ~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVEDLYKRPVFKELIENEAF 249 (270)
T ss_pred HHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHHHHhChHHHHHHhcCce
Confidence 1111246779999998432 3344444433 357889999987665444444444455544433
No 265
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.88 E-value=0.0034 Score=59.45 Aligned_cols=57 Identities=9% Similarity=-0.049 Sum_probs=39.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccc---c-CCCeEEEEEeCCcccHHHHHHHHHHHh
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVK---N-HFDLRIWMCISDIFYHKAMLEKIIAFV 60 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 60 (459)
++-+++.|+|.+|+|||+||.+++...... . .-..++|++....+...++ .++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 456899999999999999999987532221 1 1136799998877666653 3445544
No 266
>PRK05973 replicative DNA helicase; Provisional
Probab=96.86 E-value=0.012 Score=52.97 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=31.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
+.-.++.|.|.+|+|||++|.+++.. ...+-..++|++....
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC
Confidence 34568899999999999999999874 2223346777776554
No 267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0045 Score=52.33 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=63.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
-.+++|.|..|.|||||++.++.. . ....+.+++......... .....+.+..-. +-..-+...-.+.+.+..+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999983 2 234566665432211100 001111111100 0111222333355556666
Q ss_pred eEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchhh
Q 040680 85 KYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSERV 126 (459)
Q Consensus 85 ~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~~ 126 (459)
+-++++|.... .|......+...+... ..+..++++|.+...
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 77899998753 2334444455544432 225678888877643
No 268
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.85 E-value=0.0052 Score=65.40 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=52.1
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-cC-CccCHHHHHHHHHhhcCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-EF-SKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~~~~~~l~~~l~~~ 84 (459)
++.++|+.|+|||.||+.++. ... ...+.++.+...+.. .+.+.++.. .. +......+.+.++ +..
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~~~~~l~~~~~---~~p 553 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKH----TVSRLIGAPPGYVGFEQGGLLTEAVR---KHP 553 (731)
T ss_pred eEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhcc----cHHHHhcCCCCCcccchhhHHHHHHH---hCC
Confidence 578999999999999999998 332 234555544422211 111122211 11 1111122222222 234
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhcc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRN 110 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~ 110 (459)
..+++||+++..+.+.+..+...+..
T Consensus 554 ~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 554 HCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred CeEEEEechhhcCHHHHHHHHHhhcc
Confidence 56999999988777777777766653
No 269
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.85 E-value=0.0055 Score=53.37 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=28.2
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
++.|.|.+|+|||++|.+++.. ....=..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCC
Confidence 4679999999999999998873 2222246788876543
No 270
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.84 E-value=0.014 Score=62.27 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++-|.++|++|+|||++|+++++
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999999
No 271
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.84 E-value=0.0021 Score=60.24 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=50.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
|.-+++-|+|+.|+||||||.++.. ..+..-..++|++....++.... ..++.+- .+....++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 4578999999999999999999998 55555568899998777665433 2332111 1223344444444
Q ss_pred HhhcCC-ceEEEEEeCC
Q 040680 78 HQKIDR-KKYLLVLDDV 93 (459)
Q Consensus 78 ~~~l~~-~~~LlvlDdv 93 (459)
...++. .--++|+|.|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 444433 3448888988
No 272
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.84 E-value=0.015 Score=51.81 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999874
No 273
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.82 E-value=0.0052 Score=52.96 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....+|+|+|++|+||||+|+.++.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999998
No 274
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81 E-value=0.0045 Score=66.73 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=57.6
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-cC-CccCHHHHHHHHHhhcCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-EF-SKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.++|+.|+|||+||+.+++ ..-..-...+-++.+...+... +.+.++.+ .. +-.....+.+.+++ ..
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~----~~~l~g~~~gyvg~~~~~~l~~~~~~---~p 611 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT----VSKLIGSPPGYVGYNEGGQLTEAVRK---KP 611 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc----HHHhcCCCCcccCcCccchHHHHHHh---CC
Confidence 567999999999999999987 3322112334444443222111 11112211 01 11111222222222 23
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccC-----------CCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNS-----------AGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 123 (459)
..++++|++...+.+.+..+...+... ...+-+|+||..
T Consensus 612 ~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 612 YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 468999999887777777777766542 234556666654
No 275
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.81 E-value=0.0019 Score=56.72 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=52.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc--
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI-- 81 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-- 81 (459)
..+++.|.|.+|.|||++++.+.. .....=..++++..+ ...... +.+..+.. ..............-
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~apT-~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLAPT-NKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEESS-HHHHHH----HHHHHTS----EEEHHHHTTEECCEECC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEECCc-HHHHHH----HHHhhCcc---hhhHHHHHhcCCccccc
Confidence 457899999999999999999877 443332234444322 222222 22222111 111111000000000
Q ss_pred ----CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEee
Q 040680 82 ----DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVAT 121 (459)
Q Consensus 82 ----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt 121 (459)
..++-++|+|++...+...+..+...... .|+++|+.=
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 12334999999977665566666655543 466766653
No 276
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.80 E-value=0.0047 Score=55.30 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 277
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.0078 Score=64.22 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+-|.++|++|+|||+||+.+++
T Consensus 211 ~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHH
Confidence 456788999999999999999998
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.79 E-value=0.019 Score=51.48 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|.|..|.|||||++.++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999863
No 279
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.026 Score=50.10 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=23.2
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+++|=|.++|++|+|||-||++|+++
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45677889999999999999999994
No 280
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.78 E-value=0.0012 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=24.0
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|-..+.+|+|.|.+|+||||||+.++.
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 335678999999999999999999988
No 281
>PRK15453 phosphoribulokinase; Provisional
Probab=96.77 E-value=0.0069 Score=55.46 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|-..+.+|+|.|.+|+||||+|+.+++
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 667789999999999999999999886
No 282
>PRK04328 hypothetical protein; Provisional
Probab=96.76 E-value=0.0093 Score=54.60 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=32.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
|.-.++.|.|.+|+|||+||.++... ....-..++|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 56789999999999999999998773 2233456888887664
No 283
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.011 Score=59.52 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=25.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
++|=|..+|++|+|||++|+++++ +.+..|
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 466788999999999999999999 555555
No 284
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.76 E-value=0.02 Score=50.76 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCceEEEEEeCC-CCCChhhHHHHHHhhccC--CCCcEEEEeecchhhhc
Q 040680 71 NKLQEVHHQKIDRKKYLLVLDDV-WIENCDEWLKLETLLRNS--AGGSNIIVATRSERVAR 128 (459)
Q Consensus 71 ~~~~~~l~~~l~~~~~LlvlDdv-~~~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~~~ 128 (459)
+...-.+.+.+...+-+|+.|.= -.-|...-+.+...+... ..|..||+.|.+..++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 33344566777778888888863 112334555666666544 45788999999987764
No 285
>PTZ00035 Rad51 protein; Provisional
Probab=96.76 E-value=0.0066 Score=58.00 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccc----cCCCeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVK----NHFDLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
++-+++.|+|.+|+|||+|+.+++-..... ..-..++|++....+..+++ .++++..+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456889999999999999999987532211 11235679988776666653 34455543
No 286
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.74 E-value=0.007 Score=56.02 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=48.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhcccc---CCccCHHH-HHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYRE---FSKHDLNK-LQEVHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l~~ 79 (459)
.++|.++|++|+||||.+..++. .....-..+.+++..... ...+.+....+..+.+. ....+... ....+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987 444333356666544321 12233333444443221 11122222 2233333
Q ss_pred hcCCceEEEEEeCCCC
Q 040680 80 KIDRKKYLLVLDDVWI 95 (459)
Q Consensus 80 ~l~~~~~LlvlDdv~~ 95 (459)
...+..=++++|-.-.
T Consensus 150 ~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 150 AKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHCCCCEEEEeCCCC
Confidence 3334445788897743
No 287
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.00043 Score=72.15 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=16.3
Q ss_pred CccceEeecCCCCcc--ccCcccccccCCCeeccCCCc
Q 040680 275 LKHLWYLNLPGNGIT--KLPNSVSKLLNLETPDCNGCR 310 (459)
Q Consensus 275 l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~ 310 (459)
|++|+.|.+++-.+. ++..-..+++||..||+++++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN 184 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC
Confidence 445555555543321 222233344555555555543
No 288
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.74 E-value=0.021 Score=51.80 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=22.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.-.+++|.|+.|+|||||.+.++.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999987
No 289
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.73 E-value=0.015 Score=52.53 Aligned_cols=42 Identities=17% Similarity=0.011 Sum_probs=31.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
+.-.++.|.|.+|+|||++|.+++.+ ....-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 45678999999999999999988763 2223457888887544
No 290
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.021 Score=49.74 Aligned_cols=121 Identities=11% Similarity=0.088 Sum_probs=67.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC---------------------------------------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD--------------------------------------- 45 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~--------------------------------------- 45 (459)
-.||+|+|++|.|||||.+-+..=+... .+.+|++...
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4689999999999999999887632222 3445553211
Q ss_pred -----cccHHHHHHHHHHHhcccc------CCccCHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHHHHHHhhcc-CC
Q 040680 46 -----IFYHKAMLEKIIAFVAYRE------FSKHDLNKLQEVHHQKIDRKKYLLVLDDVWIE-NCDEWLKLETLLRN-SA 112 (459)
Q Consensus 46 -----~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~-~~ 112 (459)
...+++...+++..++..+ .+-+.-+...-.+.+.|.-++-++.+|..-+. |++....+...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 0122233334444444222 11122233334556777777888999987442 33333333333332 24
Q ss_pred CCcEEEEeecchhhhc
Q 040680 113 GGSNIIVATRSERVAR 128 (459)
Q Consensus 113 ~gs~iiiTtr~~~~~~ 128 (459)
.|-..|+.|.+...++
T Consensus 185 eGmTMivVTHEM~FAr 200 (240)
T COG1126 185 EGMTMIIVTHEMGFAR 200 (240)
T ss_pred cCCeEEEEechhHHHH
Confidence 5677888888776554
No 291
>PTZ00301 uridine kinase; Provisional
Probab=96.70 E-value=0.0014 Score=58.11 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++.+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 368999999999999999998876
No 292
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0029 Score=54.79 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=34.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIA 58 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 58 (459)
++..+|+|-||=|+||||||+.++++ .+ | .+++-.+.+.+-....++++-+
T Consensus 2 ~~~~~IvI~G~IG~GKSTLa~~La~~--l~--~-~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 2 NVAMVIVIEGMIGAGKSTLAQALAEH--LG--F-KVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred CcccEEEEecccccCHHHHHHHHHHH--hC--C-ceeeecccCChHHHHHHHhHHH
Confidence 45789999999999999999999983 33 1 2334445555545555544433
No 293
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0086 Score=58.63 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=25.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEE
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWM 41 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv 41 (459)
.-|.+.|++|+|||+||..++. ...|+.+=-+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKii 570 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIAL----SSDFPFVKII 570 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHh----hcCCCeEEEe
Confidence 4577999999999999999987 4556654433
No 294
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.68 E-value=0.0059 Score=56.25 Aligned_cols=41 Identities=5% Similarity=0.025 Sum_probs=31.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
|..+++.|.|.+|+|||++|.+++.+ ...+=..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 56789999999999999999998763 222234678888764
No 295
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.66 E-value=0.0068 Score=57.83 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=41.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccc---c-CCCeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVK---N-HFDLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
++-+++-|+|.+|+|||+||..++-..... . .-..++|++....+..+++. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 456788999999999999999887532221 1 11368999998888777654 5566554
No 296
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.66 E-value=0.015 Score=53.02 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.5
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+-.|+|++|+|||+||.+++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999863
No 297
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.65 E-value=0.027 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|..|+|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 298
>PRK07667 uridine kinase; Provisional
Probab=96.65 E-value=0.0023 Score=56.11 Aligned_cols=25 Identities=12% Similarity=-0.051 Sum_probs=22.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+.+|+|.|.+|+||||+|..+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999988
No 299
>PRK06762 hypothetical protein; Provisional
Probab=96.64 E-value=0.0014 Score=55.93 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++|.|.|++|+||||+|+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 300
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.63 E-value=0.0016 Score=57.72 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
|....++|+|+|++|+||||||+.++..
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6778899999999999999999999883
No 301
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.62 E-value=0.0014 Score=53.06 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEeecCCCCcHHHHHHHHhCC
Q 040680 8 FLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~ 28 (459)
|+|.|+.|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999883
No 302
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.61 E-value=0.025 Score=49.11 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=59.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhc--ccc------CC--------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF--YHKAMLEKIIAFVA--YRE------FS-------- 66 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~--~~~------~~-------- 66 (459)
-.+++|.|..|.|||||++.++... ....+.++++..+.. +...... +.+. .++ ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~---~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR---PPASGEITLDGKPVTRRSPRDAIR---AGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCccCHHHHHh---CCeEEecCCcccCcccCCCcHHHHH
Confidence 4689999999999999999999732 122344444321110 0000000 0000 000 00
Q ss_pred -----ccCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchh
Q 040680 67 -----KHDLNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSER 125 (459)
Q Consensus 67 -----~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~ 125 (459)
-..-+...-.+.+.+..++-++++|+-.. .|......+...+... ..|..||++|.+..
T Consensus 100 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 00111122234455666777899998643 2334445555555432 24678899988754
No 303
>PRK10867 signal recognition particle protein; Provisional
Probab=96.61 E-value=0.02 Score=56.38 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=47.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC-CCeEEEEEeCCcc-cHHHHHHHHHHHhccccC---CccCHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH-FDLRIWMCISDIF-YHKAMLEKIIAFVAYREF---SKHDLNKLQEVHH 78 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 78 (459)
.+.+|.++|.+|+||||.|..++. ..... -..+..|+..... ...+.++......+.+-. ...+.........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 368999999999999998888887 34333 2234445443222 122334444555442211 1234444443333
Q ss_pred hhcCCceE-EEEEeCCC
Q 040680 79 QKIDRKKY-LLVLDDVW 94 (459)
Q Consensus 79 ~~l~~~~~-LlvlDdv~ 94 (459)
+..+.+.+ ++|+|-.-
T Consensus 177 ~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 177 EEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333333 67777664
No 304
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.60 E-value=0.034 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-+.|.||+|+||||-+..+++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHH
Confidence 3467999999999998777776
No 305
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.59 E-value=0.018 Score=51.92 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=78.5
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh--hhc-----------cCChhhhHHHHHHHHccCCCCCCCc
Q 040680 87 LLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER--VAR-----------GLSKGQSWSLFILMAFEQGVEPRGS 153 (459)
Q Consensus 87 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~--~~~-----------~l~~~ea~~Lf~~~~~~~~~~~~~~ 153 (459)
++|+-.+++-..++-..++.........+|+|+...+.. +.. ..+++|....+...+...+... +
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c
Confidence 456666665555666777777777778888887543311 111 7899999999988876555422 2
Q ss_pred hHHHHHHHHHhhcCCCh-HHHHHHhhhhhcc---------cchhhhHhHhhhhhhhhhhcCC--chhhHHHHhhccC
Q 040680 154 RLVEIGKDIVEKCVGVP-LAIRTVGRLLYCN---------KIEAYWLPFRQEELSKIKQEGN--HILPILELSYNHI 218 (459)
Q Consensus 154 ~~~~~~~~i~~~~~glP-Lai~~~~~~l~~~---------~~~~~w~~~~~~~~~~~~~~~~--~i~~~l~~s~~~L 218 (459)
.++++.|+++++|.- -|+-++-+.-..+ ..+-+|+.+..+....+....+ .+.++-..-|+.|
T Consensus 208 --~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 208 --KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 578899999998753 3443332221111 1245799888877766654442 4554444445433
No 306
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.017 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|..|+|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999996
No 307
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.59 E-value=0.0015 Score=46.53 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.6
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 308
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.59 E-value=0.0042 Score=63.96 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+++.|+|++|+||||+++.++..
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999973
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.58 E-value=0.0095 Score=54.16 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=35.5
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEK 55 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 55 (459)
|.-+++.|.|.+|+|||++|.++... ....-..++|++.... ...+.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeCC--HHHHHHH
Confidence 56789999999999999999998763 2233457888887653 3444443
No 310
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.018 Score=62.04 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=19.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-+.++|.+|+|||++|+.+++
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999998
No 311
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.57 E-value=0.0028 Score=54.31 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=17.9
Q ss_pred ceEeecCCCCccccCcccccccCCCeeccCCCcccccc
Q 040680 278 LWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAEL 315 (459)
Q Consensus 278 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~l 315 (459)
...+||++|.+..++. +..++.|.+|.+.+|. +..+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I 79 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRI 79 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCc-ceee
Confidence 3445555555544432 4455555666555533 4444
No 312
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.55 E-value=0.034 Score=53.17 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=23.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+.+|+|.|.=|+|||++.+.+.+.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999883
No 313
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0067 Score=61.41 Aligned_cols=75 Identities=24% Similarity=0.209 Sum_probs=47.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.+.-|.|.|+.|+|||+||+++++... .+..-.+.+++.+..... -++.|... +...+.+.+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~--~~e~iQk~-------------l~~vfse~~~~ 493 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGS--SLEKIQKF-------------LNNVFSEALWY 493 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccch--hHHHHHHH-------------HHHHHHHHHhh
Confidence 356788999999999999999998533 444445556655443211 12222211 22334455667
Q ss_pred ceEEEEEeCCC
Q 040680 84 KKYLLVLDDVW 94 (459)
Q Consensus 84 ~~~LlvlDdv~ 94 (459)
.+-++||||++
T Consensus 494 ~PSiIvLDdld 504 (952)
T KOG0735|consen 494 APSIIVLDDLD 504 (952)
T ss_pred CCcEEEEcchh
Confidence 88999999985
No 314
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0013 Score=59.60 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=29.7
Q ss_pred CCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCC
Q 040680 390 RFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 390 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP 447 (459)
.+|.+-.|+|+. .++.+|...... ..||+|..|.++++|-...+-
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~L------------n~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDAL------------NGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHH------------cCCchhheeeccCCccccccc
Confidence 666666666665 456666432110 179999999999998777544
No 315
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0064 Score=63.24 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=53.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
.+....|+.|||||-||++++. ..-+.=+..+-++.|..-.. ..+.+-++.+ ++-...++ .-.+-+..++++
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~Ek----HsVSrLIGaP-PGYVGyee-GG~LTEaVRr~P 593 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYMEK----HSVSRLIGAP-PGYVGYEE-GGQLTEAVRRKP 593 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHHHH----HHHHHHhCCC-CCCceecc-ccchhHhhhcCC
Confidence 4667899999999999999987 22111123333333322111 1233333322 21111111 222333444565
Q ss_pred E-EEEEeCCCCCChhhHHHHHHhhccC
Q 040680 86 Y-LLVLDDVWIENCDEWLKLETLLRNS 111 (459)
Q Consensus 86 ~-LlvlDdv~~~~~~~~~~l~~~l~~~ 111 (459)
| ++.||.+...+++-...+...+...
T Consensus 594 ySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 594 YSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred CeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 5 8889999887777777777766543
No 316
>PRK06547 hypothetical protein; Provisional
Probab=96.50 E-value=0.0021 Score=55.05 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=23.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+.+|+|.|++|+||||+|+.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 317
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.50 E-value=0.0021 Score=53.34 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=19.6
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 318
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.48 E-value=0.016 Score=56.85 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=48.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-----cCCccC-H-----HHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-----EFSKHD-L-----NKL 73 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~-~-----~~~ 73 (459)
-..++|+|.+|+|||||++.++... ....+++++..-+..++..+....+...... ...... . ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4678999999999999999888732 2233566665434444554444333332111 011111 1 111
Q ss_pred HHHHHhhc--CCceEEEEEeCC
Q 040680 74 QEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 74 ~~~l~~~l--~~~~~LlvlDdv 93 (459)
.-.+.+++ +++++|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12223333 478999999998
No 319
>PRK06217 hypothetical protein; Validated
Probab=96.48 E-value=0.0085 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..|.|.|.+|+||||+|+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999983
No 320
>PRK04040 adenylate kinase; Provisional
Probab=96.47 E-value=0.0021 Score=56.04 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999988
No 321
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.47 E-value=0.045 Score=49.06 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|.|+.|.|||||++.++.-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999873
No 322
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.47 E-value=0.021 Score=56.26 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=47.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccccc-CCCeEEEEEeCCcc-cHHHHHHHHHHHhccccC---CccCHHHHHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKN-HFDLRIWMCISDIF-YHKAMLEKIIAFVAYREF---SKHDLNKLQEVHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 79 (459)
+.++.++|.+|+||||.|..++. .... .-..+..++..... ...+.+......++.+.. ...+.........+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 67999999999999999998887 3321 11234444443221 223334444555443321 12233333333333
Q ss_pred hcCCceE-EEEEeCCC
Q 040680 80 KIDRKKY-LLVLDDVW 94 (459)
Q Consensus 80 ~l~~~~~-LlvlDdv~ 94 (459)
....+.+ ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3333333 77888764
No 323
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.46 E-value=0.027 Score=60.04 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-+.++|++|+|||++|+.+++.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999983
No 324
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.0012 Score=35.11 Aligned_cols=21 Identities=48% Similarity=0.827 Sum_probs=15.3
Q ss_pred cceEeecCCCCccccCccccc
Q 040680 277 HLWYLNLPGNGITKLPNSVSK 297 (459)
Q Consensus 277 ~L~~L~l~~~~i~~lp~~i~~ 297 (459)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888877777776654
No 325
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.46 E-value=0.081 Score=48.43 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=84.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
-+.+.++|+.|+|||+-++++++. . +..+.+..+..+....+...++....... .....+....+...+++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s--~----p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS--N----PNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc--C----ccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 348899999999999999999982 1 22333446666666666666555543322 223344555555566778
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc--cCChhhhHHHHHHHHccCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR--GLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~--~l~~~ea~~Lf~~~~~~~~~ 148 (459)
.-+++.|+........++.++......+-+-..+=+-| ... .=...+..++|.+..++...
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~pr---L~~~l~~~~~~~~rl~srv~v~~~~ 228 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPR---LFKVLRRPEDELSRLYSRVRVGKLL 228 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhCceEEEecChH---HHhccccchHHHHHHHHHhhhHhhh
Confidence 88999999988777788888776655554432222223 222 34556677777777665443
No 326
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.014 Score=57.01 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+..++|+++|+.|+||||++..++.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999988876
No 327
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.44 E-value=0.0088 Score=50.02 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.7
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 328
>PHA02244 ATPase-like protein
Probab=96.44 E-value=0.011 Score=56.35 Aligned_cols=100 Identities=12% Similarity=0.199 Sum_probs=52.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
.-|.|+|++|+|||++|+++++ .....| +.++...+ .. .+...... ...+. ...+.+..+ +.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~--~lg~pf-----v~In~l~d--~~--~L~G~i~~----~g~~~--dgpLl~A~~-~G 181 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAE--ALDLDF-----YFMNAIMD--EF--ELKGFIDA----NGKFH--ETPFYEAFK-KG 181 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecChH--HH--hhcccccc----ccccc--chHHHHHhh-cC
Confidence 4578999999999999999998 433332 22221111 00 11110000 00111 001112222 34
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcc-----------CCCCcEEEEeecc
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRN-----------SAGGSNIIVATRS 123 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iiiTtr~ 123 (459)
-+++||++.....+....+...+.. ..++.++|+|+..
T Consensus 182 gvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 182 GLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred CEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 5899999976655555555555431 1356788888875
No 329
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.44 E-value=0.03 Score=49.09 Aligned_cols=118 Identities=15% Similarity=0.105 Sum_probs=60.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC---------------Cc--c-cHHHHHHHHHHHhccccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS---------------DI--F-YHKAMLEKIIAFVAYREF 65 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~---------------~~--~-~~~~~~~~i~~~l~~~~~ 65 (459)
.-.+++|.|..|.|||||.+.++.-.. .....+.++++.. +. . ....+.+.+.......
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-- 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--
Confidence 346899999999999999999987320 0222333333211 00 0 0011111111100000
Q ss_pred CccCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecch
Q 040680 66 SKHDLNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSE 124 (459)
Q Consensus 66 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~ 124 (459)
.-+.-+...-.+.+.+..++-++++|+... .|......+...+... ..|..||++|.+.
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 111122222334455556677899998743 2334455555555433 2477788888765
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.009 Score=59.58 Aligned_cols=88 Identities=9% Similarity=0.009 Sum_probs=46.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC--CCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH--FDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK 80 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 80 (459)
..++|+|+|++|+||||++..++. ....+ ...+..++..... .....+....+.++..-....+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~- 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER- 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-
Confidence 357999999999999999998887 33222 2345555443211 12222222223332222222333444444433
Q ss_pred cCCceEEEEEeCCCC
Q 040680 81 IDRKKYLLVLDDVWI 95 (459)
Q Consensus 81 l~~~~~LlvlDdv~~ 95 (459)
+.+ .=++++|..-.
T Consensus 426 l~~-~DLVLIDTaG~ 439 (559)
T PRK12727 426 LRD-YKLVLIDTAGM 439 (559)
T ss_pred hcc-CCEEEecCCCc
Confidence 333 44788888743
No 331
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.41 E-value=0.023 Score=50.13 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=59.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC-------------------Ccc--cHHHHHHHHHHHhcc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS-------------------DIF--YHKAMLEKIIAFVAY 62 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~-------------------~~~--~~~~~~~~i~~~l~~ 62 (459)
.-.+++|+|..|.|||||.+.++..... ..-.+.+.++.. +.. .......+++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~-- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKY-EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV-- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc--
Confidence 3468999999999999999999884100 011122222110 000 0000111111111
Q ss_pred ccCCccCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC-CCCcEEEEeecchh
Q 040680 63 REFSKHDLNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS-AGGSNIIVATRSER 125 (459)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~ 125 (459)
...-..-+...-.+.+.+...+-++++|+... .|......+...+... ..|..||++|.+..
T Consensus 102 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 102 -NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 00111222233344555666777899998743 2334455555555433 23667888887754
No 332
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.40 E-value=0.0083 Score=62.86 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=55.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
|..+++-|+|.+|+||||||.+++. ..+..=..++|++....++.. .+++++.+. ......+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 5678899999999999999988776 333333568999877766632 455554321 2233444555555
Q ss_pred HhhcCC-ceEEEEEeCCC
Q 040680 78 HQKIDR-KKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l~~-~~~LlvlDdv~ 94 (459)
...++. +--++|+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 554443 45689999974
No 333
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.40 E-value=0.026 Score=57.98 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-..++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 334
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.042 Score=55.89 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=25.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
..++.|.++|++|.|||.||+++++ ....+|
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f 304 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF 304 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE
Confidence 3466899999999999999999999 555555
No 335
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.0042 Score=56.41 Aligned_cols=38 Identities=32% Similarity=0.294 Sum_probs=25.5
Q ss_pred cCCCccceEeecCCCCccccCccc-ccccCCCeeccCCC
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSV-SKLLNLETPDCNGC 309 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~ 309 (459)
+.+|++|++|++++|.+..-.... -.+.+|++|.+.++
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 467888999999988754322222 25567888877764
No 336
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.39 E-value=0.027 Score=60.38 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
.+++.++|++|+|||++|+.+++ .....|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 35799999999999999999998 454444
No 337
>PRK06696 uridine kinase; Validated
Probab=96.39 E-value=0.0025 Score=57.38 Aligned_cols=24 Identities=17% Similarity=-0.018 Sum_probs=22.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.+|+|.|.+|+||||+|++++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999998
No 338
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.39 E-value=0.039 Score=50.42 Aligned_cols=122 Identities=9% Similarity=0.058 Sum_probs=62.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccc-ccC--CC--eEEEEEeCC----cccHHHHH--------------HHHHHHhc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETV-KNH--FD--LRIWMCISD----IFYHKAML--------------EKIIAFVA 61 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--f~--~~~wv~~~~----~~~~~~~~--------------~~i~~~l~ 61 (459)
-.+++|+|..|+|||||++.++....- .+. ++ .+.++.-.. ..++.+.+ .+++..++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 468999999999999999999874211 111 11 222322110 11122211 12233322
Q ss_pred ccc-----CCc-cCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC--CCCcEEEEeecchhh
Q 040680 62 YRE-----FSK-HDLNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS--AGGSNIIVATRSERV 126 (459)
Q Consensus 62 ~~~-----~~~-~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~ 126 (459)
... ... +.-+...-.+.+.+..+.-++++|.-.. .|......+...+... ..|..||++|.+...
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 211 001 1112222234455666777899998643 2334444455555443 236778999887644
No 339
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.38 E-value=0.024 Score=49.87 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|+|+.|.|||||.+.++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 37999999999999999998875
No 340
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.38 E-value=0.0034 Score=52.39 Aligned_cols=36 Identities=11% Similarity=-0.004 Sum_probs=29.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEE
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMC 42 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 42 (459)
..||-|.|.+|.||||||+++.. +....-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35889999999999999999999 6666666677775
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0049 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.|.|.|.+|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 342
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.36 E-value=0.0053 Score=50.60 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=53.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCccc-ccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETV-KNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
....|.|+|..|+||+++|+.++..... ...|..+ +.... . .+.+.+ .
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-------------------------~~~l~~-a- 68 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-------------------------AELLEQ-A- 68 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-------------------------HHHHHH-C-
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-------------------------HHHHHH-c-
Confidence 4566889999999999999999874221 1222111 00010 0 111111 1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEEeecch
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIVATRSE 124 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~ 124 (459)
+.--|+++|+..-+......+...+... ....|+|.||...
T Consensus 69 -~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 -KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 3346789999877766777777777643 5678999998754
No 343
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.36 E-value=0.021 Score=52.30 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.5
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|.++|++|+||||+|++++.
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 344
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.36 E-value=0.007 Score=55.92 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=36.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
|.-+++.|+|.+|+|||++|.++.. ........++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 5678999999999999999999998 56666888999988765
No 345
>PRK13948 shikimate kinase; Provisional
Probab=96.35 E-value=0.0028 Score=54.73 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=23.8
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|-+.++.|.++|+.|+||||+++.++.
T Consensus 6 ~~~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 6 IERPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999999998
No 346
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.35 E-value=0.04 Score=50.55 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=22.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|.|..|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999974
No 347
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.1 Score=46.38 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=28.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
.++=|.++|++|.|||-||++|+++ ..+.|+.++.+
T Consensus 180 QPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs 215 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS 215 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH
Confidence 3566889999999999999999984 33456667665
No 348
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.057 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|.|..|.|||||.+.++..
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 349
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.051 Score=49.29 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 77 HHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 77 l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
+.+.+..++-++++|.-.. .|......+...+.....|..||++|.+...
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 198 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLST 198 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 4455566778999998754 2334445555555443336778888877644
No 350
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.33 E-value=0.06 Score=48.91 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 77 HHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 77 l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
+.+.+..++-++++|+-.. .|......+...+.....|..||++|.+...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 199 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLST 199 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 3344455667899998754 2334455555555544447788898887643
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.32 E-value=0.0094 Score=55.41 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=21.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-+|+|.|..|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987755
No 352
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.32 E-value=0.049 Score=53.39 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++|+|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4789999999999999999865
No 353
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.32 E-value=0.0027 Score=54.58 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+.|.|+|++|+||||+|+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
No 354
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.037 Score=49.29 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=20.1
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++|+|..|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 355
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.018 Score=60.18 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.+||+++|+.|+||||.+..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 579999999999999999988873
No 356
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.081 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|.|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 357
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.29 E-value=0.017 Score=49.28 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=55.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-|.|+|..|+||+.+|+.+++. -...-..-+-|+.+.. +...+..+++............ ...-.+... .
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~~~~~~~--~~~G~l~~A---~ 93 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELLESELFGHEKGAFTGARS--DKKGLLEQA---N 93 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHHHHHHHEBCSSSSTTTSS--EBEHHHHHT---T
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchhhhhhhcccccccccccc--ccCCceeec---c
Confidence 455779999999999999999983 2111112223333322 2333333343321111000000 000122222 1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccC-----------CCCcEEEEeecch
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNS-----------AGGSNIIVATRSE 124 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~~ 124 (459)
.=-|+||++..........+...+... ....|||.||...
T Consensus 94 ~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp TSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 236889999877666666666666532 1256888888743
No 358
>PRK03839 putative kinase; Provisional
Probab=96.28 E-value=0.0026 Score=55.15 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.28 E-value=0.0072 Score=58.47 Aligned_cols=82 Identities=11% Similarity=0.127 Sum_probs=48.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVHH 78 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 78 (459)
.-.++.|.|.+|+|||||+.+++. .....-..++|++..... ..+ ..-+++++... ....+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 457899999999999999999987 333333467888765432 222 22233443221 11233444444443
Q ss_pred hhcCCceEEEEEeCC
Q 040680 79 QKIDRKKYLLVLDDV 93 (459)
Q Consensus 79 ~~l~~~~~LlvlDdv 93 (459)
+ .+.-++|+|.+
T Consensus 156 ~---~~~~lVVIDSI 167 (372)
T cd01121 156 E---LKPDLVIIDSI 167 (372)
T ss_pred h---cCCcEEEEcch
Confidence 2 34557888887
No 360
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.0088 Score=51.31 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=26.6
Q ss_pred CcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecC
Q 040680 341 NLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILG 401 (459)
Q Consensus 341 ~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~ 401 (459)
+...++++.| ....++.|..++.|..|.+.+ +.++.+.+..-. .+|+|+.|.|.+
T Consensus 43 ~~d~iDLtdN--dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~---~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 43 QFDAIDLTDN--DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDT---FLPNLKTLILTN 97 (233)
T ss_pred ccceeccccc--chhhcccCCCccccceEEecC-Ccceeeccchhh---hccccceEEecC
Confidence 3344455554 334444455555555555554 344444433211 455555555555
No 361
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.071 Score=46.40 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=22.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|..+|.++.|++|+||||+.+.+-+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 4678999999999999999998765
No 362
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.25 E-value=0.06 Score=49.60 Aligned_cols=112 Identities=6% Similarity=0.021 Sum_probs=59.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC-
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID- 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 82 (459)
..+++++|.+|+||||+++.++. ....+=..+.+++..... .....+......++.+.....+.+.+.+.+.. ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH-HHh
Confidence 37899999999999999998877 333222345556544322 12222233333333332222344444444332 22
Q ss_pred -CceEEEEEeCCCCC--ChhhHHHHHHhhccCCCCcEEEE
Q 040680 83 -RKKYLLVLDDVWIE--NCDEWLKLETLLRNSAGGSNIIV 119 (459)
Q Consensus 83 -~~~~LlvlDdv~~~--~~~~~~~l~~~l~~~~~gs~iii 119 (459)
.+.=++++|-.-.. +....+.+...+....+.-.++|
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LV 191 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 191 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEE
Confidence 23458889988543 23345555555543344334444
No 363
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.24 E-value=0.037 Score=57.97 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++-|.|+|++|+|||++|+.+++
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45589999999999999999988
No 364
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.24 E-value=0.01 Score=57.14 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=56.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..+|.|.|+.|.||||+...+.+ .+..+....++.. .+.. +.........+...+. ..+.....+.++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~--E~~~~~~~~~i~q~ev-g~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPI--EYVHRNKRSLINQREV-GLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCCh--hhhccCccceEEcccc-CCCCcCHHHHHHHhhccC
Confidence 57899999999999999999887 4444444455542 2211 1110000000000111 111223455566677778
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeec
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATR 122 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr 122 (459)
+=.|++|.+.+. +.+.. .+.....|-.++.|..
T Consensus 196 pd~i~vgEird~--~~~~~---~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVEL---ALTAAETGHLVFGTLH 228 (343)
T ss_pred CCEEEEeCCCCH--HHHHH---HHHHHHcCCcEEEEEc
Confidence 889999999532 33332 2222344555555544
No 365
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.23 E-value=0.0036 Score=54.87 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=29.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC--------CeEEEEEeCCcc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF--------DLRIWMCISDIF 47 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--------~~~~wv~~~~~~ 47 (459)
...++.|.|++|+|||+++.+++.+......| ..++|++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 34688999999999999999998743322222 378888876653
No 366
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.072 Score=46.91 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHhhcCCceEEEEEeCCCCC-ChhhHHHHHHhhccC-CCCcEEEEeecchhhhc
Q 040680 75 EVHHQKIDRKKYLLVLDDVWIE-NCDEWLKLETLLRNS-AGGSNIIVATRSERVAR 128 (459)
Q Consensus 75 ~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~~~~ 128 (459)
..+.+.+.-++-+.|||..++. |.+....+...+... ..|+-++|.|.++.++.
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~ 208 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD 208 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh
Confidence 3344444446778999988653 334555555544432 45777888888776654
No 367
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.23 E-value=0.01 Score=57.15 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=62.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.++=+-|||.-|.|||-|.-.+|+...+... ..........++.+.+........... .+.+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~----~va~~l~~ 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDPLP----QVADELAK 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCccHH----HHHHHHHh
Confidence 4566889999999999999999985333111 111223444455554432222222233 33344455
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEEeecch
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIVATRSE 124 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~ 124 (459)
+..+|.||.+.-.|..+..-+...+... ..|. ++|+|.|.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 6679999998776656655555555543 4565 55555554
No 368
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.23 E-value=0.019 Score=55.03 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=59.4
Q ss_pred cCeeEEeecCCCCcHHH-HHHHHhCCccc-ccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccccCCccCHHHHHHHHHhh
Q 040680 4 IERFFLSMEIGGLGKTA-VTQLVYNDETV-KNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK 80 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTt-LA~~v~~~~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 80 (459)
..++|+++|+.|||||| ||+..+. .. ...=..+..++..... .+.+.++.-++-++.+-....+..+....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar--~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~- 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR--YVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA- 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH--HHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-
Confidence 37999999999999998 5665555 22 2333456666654433 44555666666666554444444444444433
Q ss_pred cCCceEEEEEeCCCCC--ChhhHHHHHHhhccC
Q 040680 81 IDRKKYLLVLDDVWIE--NCDEWLKLETLLRNS 111 (459)
Q Consensus 81 l~~~~~LlvlDdv~~~--~~~~~~~l~~~l~~~ 111 (459)
+++.+ ++.+|=+-.. +....+++..++...
T Consensus 279 l~~~d-~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 279 LRDCD-VILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hhcCC-EEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 33333 5566766442 233455566665544
No 369
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.22 E-value=0.056 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|.|+.|.|||||.+.++..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.21 E-value=0.0018 Score=51.57 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccCCCe
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNHFDL 37 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~ 37 (459)
|.|.|.+|+|||++|+.++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 67777643
No 371
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.20 E-value=0.022 Score=48.35 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=18.5
Q ss_pred EEeecCCCCcHHHHHHHHhC
Q 040680 8 FLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~ 27 (459)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998
No 372
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.19 E-value=0.0037 Score=54.05 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|.+|+||||||..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 373
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.18 E-value=0.07 Score=47.95 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|+|..|.|||||++.++..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 374
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.17 E-value=0.05 Score=49.95 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=22.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|+|..|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 375
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.17 E-value=0.12 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.++-|..+|++|.|||-+|+++++.
T Consensus 150 APknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcc
Confidence 3678999999999999999999993
No 376
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.17 E-value=0.027 Score=55.15 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=48.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-------cCCccCHHH-----
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-------EFSKHDLNK----- 72 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 72 (459)
-..++|.|.+|+|||||++.++.... ...+++.....+.....++.+..+..-+.. .........
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999987422 223444443333444555555443331100 011111111
Q ss_pred HHHHHHhhc--CCceEEEEEeCC
Q 040680 73 LQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 73 ~~~~l~~~l--~~~~~LlvlDdv 93 (459)
....+.+++ +++++|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112233444 478999999998
No 377
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.16 E-value=0.0093 Score=56.78 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=40.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC----CCeEEEEEeCCcccHHHHHHHHHHHh
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH----FDLRIWMCISDIFYHKAMLEKIIAFV 60 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 60 (459)
|..+++-|+|.+|+|||++|.+++........ =..++|++....++..++.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 45688999999999999999999864222211 14799999888777766543 34443
No 378
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.16 E-value=0.0038 Score=54.07 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
++++|+|++|+||||+|+.++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 379
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.15 E-value=0.0032 Score=55.53 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|.+|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 380
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.0059 Score=53.81 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....+|+|+|++|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999988
No 381
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.14 E-value=0.015 Score=52.49 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.+|+|.|++|+|||||++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 382
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.13 E-value=0.033 Score=50.96 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=52.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCccc--ccCCCeEEEEEeCCcc-cHHHHHHHHHHHhccc-------cCCccCH-----
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETV--KNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYR-------EFSKHDL----- 70 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 70 (459)
+.++|.|-+|+|||+|+.+++++... +++-+.++++-+++.. ...++.+++...=... .......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999999885331 1224677787776553 5556666555431100 0001111
Q ss_pred HHHHHHHHhhc---CCceEEEEEeCC
Q 040680 71 NKLQEVHHQKI---DRKKYLLVLDDV 93 (459)
Q Consensus 71 ~~~~~~l~~~l---~~~~~LlvlDdv 93 (459)
......+.+++ +++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11112233444 368999999999
No 383
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.13 E-value=0.042 Score=59.39 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.+-+.++|++|+|||++|..++..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999883
No 384
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.12 E-value=0.11 Score=52.94 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=71.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcc---cccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDET---VKNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 79 (459)
-+.+-|.|-+|.|||..+..|.+.-. -+..-+ ..+.|+.-.-..+.+++..|...+.+.. .......+.+..
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~---~~~~~al~~L~~ 498 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGER---VTWDAALEALNF 498 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCc---ccHHHHHHHHHH
Confidence 34788999999999999999988411 112222 3345565556678899999999987653 233444444544
Q ss_pred hcC-----CceEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEEee
Q 040680 80 KID-----RKKYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIVAT 121 (459)
Q Consensus 80 ~l~-----~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTt 121 (459)
+.. .+.+++++|+++..-...-+.+...+.|- .+++|++|.+
T Consensus 499 ~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 499 RFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred hhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 443 45788889988332111233455555554 4677766654
No 385
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.11 E-value=0.057 Score=56.69 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-..|+|+|.+|+||||||+.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999976
No 386
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.11 E-value=0.0054 Score=53.29 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=29.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEE
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMC 42 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 42 (459)
.|+|.|+|+.|+|||||+.++.. ...++|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 58999999999999999999998 6667775555444
No 387
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.10 E-value=0.086 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|.|..|.|||||.+.++..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 388
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.10 E-value=0.015 Score=61.40 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=50.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-CCccC-HHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-FSKHD-LNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~-~~~~~~~l~~~l~~ 83 (459)
..+.++|++|+|||.+|+.++. .... ..+.++.+...... .+.+-++.+. ....+ ...+.+.+. +.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~--~l~~---~~i~id~se~~~~~----~~~~LiG~~~gyvg~~~~g~L~~~v~---~~ 556 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFDMSEYMERH----TVSRLIGAPPGYVGFDQGGLLTDAVI---KH 556 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhCC---CcEEeechhhcccc----cHHHHcCCCCCcccccccchHHHHHH---hC
Confidence 4678999999999999999988 3432 23344443322111 1111122111 11111 112222222 23
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhc
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~ 109 (459)
...+++||++...+.+.+..+...+.
T Consensus 557 p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred CCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 45699999998776666666666554
No 389
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.10 E-value=0.0046 Score=53.92 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|.|.|++|+||||+|+.++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 390
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.14 Score=48.66 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
+-|..+|++|.|||-||++||. +.. .-|++++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvAT--Ec~-----tTFFNVSs 278 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVAT--ECG-----TTFFNVSS 278 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHH--hhc-----CeEEEech
Confidence 5578999999999999999998 444 34555554
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.09 E-value=0.0046 Score=53.32 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-++|.+.|++|+||||+|+.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 392
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.09 E-value=0.014 Score=57.64 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=52.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccc------cCCccCH------H
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYR------EFSKHDL------N 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~~------~ 71 (459)
=+.++|.|.+|+|||+|+.+++++... .+-+.++++-++.. ....++..++...-... .....+. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 356899999999999999998874322 24467777666544 34555655554431100 0111111 1
Q ss_pred HHHHHHHhhc---CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI---DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l---~~~~~LlvlDdv 93 (459)
.....+.+++ .++++|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1122334444 378999999999
No 393
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.091 Score=48.04 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 394
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.08 E-value=0.0049 Score=50.69 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=19.6
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|+|+.|+|||||++.++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.08 E-value=0.045 Score=48.89 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 396
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.08 E-value=0.0042 Score=53.82 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=20.3
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 397
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.07 E-value=0.0072 Score=49.18 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=31.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISD 45 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~ 45 (459)
-.+|.|.|++|+||+||..-+.. .....|+ +.+|++-.+
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G--~La~~F~~~G~~~l~~~~ 68 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIG--ALAGQFSCTGELWLNEQR 68 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHh--hcccCcceeeEEEECCee
Confidence 35899999999999999888877 5666774 788886443
No 398
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.06 E-value=0.011 Score=53.70 Aligned_cols=76 Identities=11% Similarity=-0.014 Sum_probs=42.1
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc--cHHHHHHHHHHH----hcccc--CCccCHHHHHHHHH
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF--YHKAMLEKIIAF----VAYRE--FSKHDLNKLQEVHH 78 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~----l~~~~--~~~~~~~~~~~~l~ 78 (459)
+|+|.|.+|+||||+|+.+.. ..+..-..+..++..... +....-+.+... .+-.. ....+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 689999999999999998887 333221234455433322 222222222221 11222 44566677777666
Q ss_pred hhcCCc
Q 040680 79 QKIDRK 84 (459)
Q Consensus 79 ~~l~~~ 84 (459)
...+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 665554
No 399
>PRK00625 shikimate kinase; Provisional
Probab=96.06 E-value=0.004 Score=53.39 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=19.5
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|.++||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 400
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.0043 Score=55.34 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=49.6
Q ss_pred CCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCC
Q 040680 339 HKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADG 418 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 418 (459)
+.+|+.|.+.++ ....+..+-.||+|++|.++.+..-....... ....+|+|+.|+|+++ +++.+ ..+.
T Consensus 42 ~~~le~ls~~n~--gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v--l~e~~P~l~~l~ls~N-ki~~l-stl~----- 110 (260)
T KOG2739|consen 42 FVELELLSVINV--GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV--LAEKAPNLKVLNLSGN-KIKDL-STLR----- 110 (260)
T ss_pred ccchhhhhhhcc--ceeecccCCCcchhhhhcccCCccccccccee--hhhhCCceeEEeecCC-ccccc-cccc-----
Confidence 356666666666 33444555677888888888642111111111 0114588888888873 44432 1111
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCC
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLI 444 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~ 444 (459)
|.-.+.+|..|++.+|+...
T Consensus 111 ------pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 ------PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ------hhhhhcchhhhhcccCCccc
Confidence 01157788888888886544
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.04 E-value=0.033 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+++|++|+||||++..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999999988
No 402
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.019 Score=54.75 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=55.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVHH 78 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 78 (459)
+-.+|.|-|-+|||||||..+++. +...+- .+.||+.-++...-+ --+.+++.+. ....+.++..+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 356899999999999999999998 555444 788887766533222 2344454322 22345566655555
Q ss_pred hhcCCceEEEEEeCCC
Q 040680 79 QKIDRKKYLLVLDDVW 94 (459)
Q Consensus 79 ~~l~~~~~LlvlDdv~ 94 (459)
+ .++-++|+|.+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 5 577899999984
No 403
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.0085 Score=53.06 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|.+|+||||||+.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345799999999999999999986
No 404
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.02 E-value=0.0053 Score=53.18 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=20.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999998
No 405
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.099 Score=47.93 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|..|.|||||++.++..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999873
No 406
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.02 E-value=0.038 Score=46.93 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=62.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEE---EEEeCCcccHHHHHHHHHHHhcc----cc--CCccC------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRI---WMCISDIFYHKAMLEKIIAFVAY----RE--FSKHD------ 69 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~~----~~--~~~~~------ 69 (459)
...|-|++..|.||||.|..++. +...+=-.++ |+.......-...+..+ .+.. .. ....+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 35778888899999999998887 3333222222 33332112222222222 1110 00 00011
Q ss_pred -HHHHHHHHHhhcCCce-EEEEEeCCCC---CChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 70 -LNKLQEVHHQKIDRKK-YLLVLDDVWI---ENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 70 -~~~~~~~l~~~l~~~~-~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
.....+..++.+...+ =++|||.+-. ...-+.+.+...+.....+..+|+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1222233344444444 4999999732 11234566777787788888999999975
No 407
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.01 E-value=0.014 Score=55.48 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=40.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCccccc----CCCeEEEEEeCCcccHHHHHHHHHHHh
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKN----HFDLRIWMCISDIFYHKAMLEKIIAFV 60 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 60 (459)
|..+++-|+|.+|+|||++|.+++....... .-..++||+....++..++. ++++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 4568899999999999999999987432211 11379999988877776654 444444
No 408
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.01 E-value=0.026 Score=56.24 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=50.2
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
+.-.++.|.|.+|+|||||+.+++.+ ...+-..++|++..... ..+.. -++.++... ....+.+.+.+.+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 34678999999999999999999873 32223467888865543 22221 234443211 1123445454444
Q ss_pred HhhcCCceEEEEEeCCC
Q 040680 78 HQKIDRKKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l~~~~~LlvlDdv~ 94 (459)
.+ .+.-++|+|.+.
T Consensus 153 ~~---~~~~lVVIDSIq 166 (446)
T PRK11823 153 EE---EKPDLVVIDSIQ 166 (446)
T ss_pred Hh---hCCCEEEEechh
Confidence 32 245589999873
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.00 E-value=0.027 Score=56.11 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=44.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.+|++++|+.|+||||.+..++.....+.....+..++.... ....+.+....+.++.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 479999999999999999999873222221223455543321 1233334444444443222112222222222 23344
Q ss_pred ceEEEEEeCCC
Q 040680 84 KKYLLVLDDVW 94 (459)
Q Consensus 84 ~~~LlvlDdv~ 94 (459)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 366677764
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.00 E-value=0.0078 Score=54.12 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=19.0
Q ss_pred EEeecCCCCcHHHHHHHHhC
Q 040680 8 FLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~ 27 (459)
|.|.|++|+||||+|+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 411
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.99 E-value=0.006 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=23.5
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+...+|.+.|.-|+||||+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 55679999999999999999999984
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.074 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-|-|.++|++|.||+.||++|+..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh
Confidence 466889999999999999999983
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.98 E-value=0.097 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++.|.|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999988864
No 414
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.98 E-value=0.12 Score=45.62 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|.|..|.|||||++.++.-
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3568999999999999999999874
No 415
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.97 E-value=0.013 Score=54.02 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.|.|+|.+|+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4789999999999999999988
No 416
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.97 E-value=0.064 Score=52.63 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=27.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI 43 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~ 43 (459)
+.+|.++|..|+||||.|..++. ..+.+-..+..++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~--~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY--YYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEcC
Confidence 68999999999999999999987 33333224444543
No 417
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.96 E-value=0.0042 Score=30.65 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=10.2
Q ss_pred CccceeeecCCCCCCCCC
Q 040680 430 PCLSELDISGCPKLILIP 447 (459)
Q Consensus 430 ~~L~~L~l~~c~~l~~lP 447 (459)
++|+.|+|++|+ ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888884 77776
No 418
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0042 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+|.|.|++|+||||+|+.++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 7899999999999999999984
No 419
>PRK14527 adenylate kinase; Provisional
Probab=95.95 E-value=0.0068 Score=53.08 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.4
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+...+|.|+|++|+||||+|+.++.
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999986
No 420
>PRK13947 shikimate kinase; Provisional
Probab=95.94 E-value=0.0046 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.7
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 421
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.94 E-value=0.034 Score=54.58 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=48.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccc------cCCccC-HH----
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYR------EFSKHD-LN---- 71 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~-~~---- 71 (459)
.-..++|+|..|+|||||++++++... -+.++++-++.. ....++..+.+..-+.. ...... ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999998422 133444444433 34445554444331100 011111 11
Q ss_pred -HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 -KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 -~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1112233333 478999999999
No 422
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.94 E-value=0.039 Score=50.87 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=60.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHH--HHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNK--LQEVH 77 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~--~~~~l 77 (459)
-.++.|.|.+|+|||++|.+++.+..... -..++|++.... ..++...++.....-. ....+.++ .....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~--~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMS--EEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS---HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCC--HHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 45899999999999999999998533332 267888876543 4556555555553221 11111111 12222
Q ss_pred HhhcCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 78 HQKIDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 78 ~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
...+.+.+ +.| ++....+.++.......+.....+..+||.---.
T Consensus 96 ~~~l~~~~-l~i-~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ 140 (259)
T PF03796_consen 96 AEKLSDLP-LYI-EDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQ 140 (259)
T ss_dssp HHHHHTSE-EEE-EESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGG
T ss_pred HHHHhhCc-EEE-ECCCCCCHHHHHHHHHHHHhhccCCCEEEechHH
Confidence 34455555 344 4443333333333333333233666777766544
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.94 E-value=0.038 Score=55.13 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=48.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
+.-.++.|.|.+|+|||||+.+++.+ ....-..++|++..... ..+.. -+..++... ....+.+.+.+.+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs~--~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEESL--QQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCCH--HHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 45678999999999999999999773 22222357888765442 22211 122332111 1223444444444
Q ss_pred HhhcCCceEEEEEeCCC
Q 040680 78 HQKIDRKKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l~~~~~LlvlDdv~ 94 (459)
.+ .+.-++|+|.+.
T Consensus 167 ~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 167 EE---ENPQACVIDSIQ 180 (454)
T ss_pred Hh---cCCcEEEEecch
Confidence 32 244578999873
No 424
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.94 E-value=0.0096 Score=52.36 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=28.3
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHH
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKA 51 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 51 (459)
.|+|+|-||+||||+|..++.. ....+=..+.-|+....++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChHH
Confidence 6899999999999999985552 2222212345566555544443
No 425
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.94 E-value=0.078 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..-+.++|.+|+|||++|..+++.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 345679999999999999999883
No 426
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.94 E-value=0.093 Score=47.99 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|..|+|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999984
No 427
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.93 E-value=0.029 Score=54.89 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=48.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccc------cCCccC-H-----H
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYR------EFSKHD-L-----N 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~-~-----~ 71 (459)
-..++|.|..|+|||||++.+++. .. .+.+++.-++.. ....++.+.++..-... ...... . .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 467899999999999999999873 21 144555545443 34455555554431110 001111 1 1
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
...-.+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1111233433 578999999999
No 428
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.92 E-value=0.054 Score=49.55 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=48.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccc-ccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHH----HHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETV-KNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNK----LQEVHHQ 79 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~l~~ 79 (459)
+=|++.+|.+|.||.-+|+.++++-.- ..+-+.|- .......-+ .....+. +...++.
T Consensus 110 PLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~---------------~fvat~hFP--~~~~ie~Yk~eL~~~v~~ 172 (344)
T KOG2170|consen 110 PLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH---------------HFVATLHFP--HASKIEDYKEELKNRVRG 172 (344)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH---------------HhhhhccCC--ChHHHHHHHHHHHHHHHH
Confidence 568999999999999999999875211 11111111 111111111 1111111 2222222
Q ss_pred hc-CCceEEEEEeCCCCCChhhHHHHHHhhc
Q 040680 80 KI-DRKKYLLVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 80 ~l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~ 109 (459)
.. .-+|.++|+|+++.....-.+.+...+.
T Consensus 173 ~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 173 TVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 22 2378899999998776666777777665
No 429
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.91 E-value=0.0054 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+|.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 430
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.91 E-value=0.042 Score=48.80 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=34.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIA 58 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~ 58 (459)
.-++|.|.+|+|||+|+.+++++. .-+.++++-+++. ....++.+++..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKG 65 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhh
Confidence 457899999999999999998843 2234577776654 345555555533
No 431
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.90 E-value=0.01 Score=55.88 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=32.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAM 52 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 52 (459)
.|++-+.|.|||||||+|.+.+- ........+.-|+.....+...+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDV 47 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhh
Confidence 58999999999999999998776 44444344666665555444443
No 432
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.89 E-value=0.0078 Score=55.70 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=41.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCccccc-CCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKN-HFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.+-|.++|+.|+|||++++..... ... .| .+.-++.+...+...+ +.+++.-.....+. .-.--.+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~--l~~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~---------~~gP~~~ 99 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSS--LDSDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR---------VYGPPGG 99 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHC--STTCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE---------EEEEESS
T ss_pred CCcEEEECCCCCchhHHHHhhhcc--CCcccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC---------CCCCCCC
Confidence 567889999999999999998863 222 11 2334455544333333 22222110000000 0000136
Q ss_pred ceEEEEEeCCCCCC
Q 040680 84 KKYLLVLDDVWIEN 97 (459)
Q Consensus 84 ~~~LlvlDdv~~~~ 97 (459)
|+.++.+||+--..
T Consensus 100 k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQ 113 (272)
T ss_dssp SEEEEEEETTT-S-
T ss_pred cEEEEEecccCCCC
Confidence 89999999996543
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.88 E-value=0.11 Score=46.51 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=20.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++.|.|+.|.||||+.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999888876
No 434
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.88 E-value=0.13 Score=48.89 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=19.0
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++++.|++|+||||+|+.+.+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999987
No 435
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.1 Score=45.05 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 5688999999999999999998
No 436
>PLN02165 adenylate isopentenyltransferase
Probab=95.87 E-value=0.0072 Score=56.87 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
|.+..++|+|+|+.|+|||+||..++..
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3455679999999999999999999883
No 437
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.87 E-value=0.0058 Score=53.07 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=19.7
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 438
>PLN02348 phosphoribulokinase
Probab=95.84 E-value=0.026 Score=54.33 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-+|+|.|.+|+||||+|+.+.+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999998
No 439
>PRK05439 pantothenate kinase; Provisional
Probab=95.82 E-value=0.027 Score=52.85 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-+|+|.|.+|+||||+|+.+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999887
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.82 E-value=0.0072 Score=52.69 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=21.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.+|+|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999873
No 441
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.81 E-value=0.097 Score=52.63 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|..|+|||||++.++..
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 442
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.021 Score=51.01 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=25.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
++++=|.++|++|.|||-+|++|+| +....|
T Consensus 209 dppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 4567788999999999999999999 555444
No 443
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.80 E-value=0.036 Score=54.29 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=46.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC-cccHHHHHHHHHHHhccc------cCCcc-CH-----H
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD-IFYHKAMLEKIIAFVAYR------EFSKH-DL-----N 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~------~~~~~-~~-----~ 71 (459)
-..++|.|.+|+|||||+..+++... . +..+...+.. .....++.+.....=... ..... .. .
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~---~-~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE---A-DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC---C-CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987322 1 2333333433 334444544443321000 00111 11 1
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
...-.+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1112223333 478999999999
No 444
>PF13479 AAA_24: AAA domain
Probab=95.80 E-value=0.04 Score=49.13 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=18.0
Q ss_pred eeEEeecCCCCcHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLV 25 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v 25 (459)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 45789999999999999977
No 445
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.79 E-value=0.047 Score=49.71 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=35.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIA 58 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 58 (459)
.-.++.|.|.+|+|||++|.+++.+...+ +=..++|++.... ..++...++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~~--~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEMS--KEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCCC--HHHHHHHHHH
Confidence 45689999999999999999998742222 1246777776553 4455555443
No 446
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.78 E-value=0.05 Score=53.75 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=50.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhccc------cCCcc-CHH-----H
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKIIAFVAYR------EFSKH-DLN-----K 72 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~-~~~-----~ 72 (459)
+.++|.|.+|+|||||+.+++.+..... =+.++++-++.. ..+.++.+++...=... ..... ... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5689999999999999998876422221 135666656544 34556666665431110 01111 111 1
Q ss_pred HHHHHHhhc---CCceEEEEEeCC
Q 040680 73 LQEVHHQKI---DRKKYLLVLDDV 93 (459)
Q Consensus 73 ~~~~l~~~l---~~~~~LlvlDdv 93 (459)
..-.+.+++ +++++|+++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 122244554 678999999999
No 447
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.78 E-value=0.01 Score=48.99 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=26.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccc-cCCCeEEEEEeCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVK-NHFDLRIWMCISD 45 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~wv~~~~ 45 (459)
++|.|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 5899999999999999999999 444 4455555555443
No 448
>PRK13949 shikimate kinase; Provisional
Probab=95.77 E-value=0.007 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-|.|+|+.|+||||+|+.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999998
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.76 E-value=0.0099 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVY 26 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~ 26 (459)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 450
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.76 E-value=0.0089 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=22.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 356999999999999999999997
No 451
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.75 E-value=0.0072 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|.|.|..|+||||+|+.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 452
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.73 E-value=0.0056 Score=53.33 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=19.0
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999983
No 453
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.73 E-value=0.04 Score=54.24 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=50.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc------cCCcc-CHH-----
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR------EFSKH-DLN----- 71 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~-~~~----- 71 (459)
.-..++|.|..|+|||||++.++...... .++++....+...+.++.+.+...-... ..... ...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35688999999999999999998743221 2555555555555666655554431100 00111 111
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
...-.+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233333 478999999999
No 454
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.06 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|.|+.|+|||||.+.++.-
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 458999999999999999999873
No 455
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.72 E-value=0.01 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|.|+|+|-||+||||+|..++.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 5799999999999999998887
No 456
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.71 E-value=0.03 Score=55.46 Aligned_cols=88 Identities=9% Similarity=0.124 Sum_probs=51.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCCc-ccHHHHHHHHHHHhcccc------CCcc-CH-----
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISDI-FYHKAMLEKIIAFVAYRE------FSKH-DL----- 70 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~-~~----- 70 (459)
+-++|.|-.|+|||+|+.+++++....+.+. .++++-+++. ..+.++++.+...=.... .... ..
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5689999999999999999998644332221 4555555543 355566666553311000 0111 11
Q ss_pred HHHHHHHHhhcC---CceEEEEEeCC
Q 040680 71 NKLQEVHHQKID---RKKYLLVLDDV 93 (459)
Q Consensus 71 ~~~~~~l~~~l~---~~~~LlvlDdv 93 (459)
......+.++++ ++++|+++||+
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 111223445554 68999999999
No 457
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.008 Score=50.28 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.7
Q ss_pred eEEeecCCCCcHHHHHHHHh
Q 040680 7 FFLSMEIGGLGKTAVTQLVY 26 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~ 26 (459)
.|+|.|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 458
>PRK13946 shikimate kinase; Provisional
Probab=95.70 E-value=0.0077 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.|.++|+.|+||||+|+.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999998
No 459
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.69 E-value=0.028 Score=48.87 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....+|.|.|.+|+||||+|+.+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999997
No 460
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.68 E-value=0.57 Score=45.56 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCC---hhhHHHHHHhhcc--CCCCcEEEEeecchhhhc-----------------cCChhhhHHHHHHH
Q 040680 85 KYLLVLDDVWIEN---CDEWLKLETLLRN--SAGGSNIIVATRSERVAR-----------------GLSKGQSWSLFILM 142 (459)
Q Consensus 85 ~~LlvlDdv~~~~---~~~~~~l~~~l~~--~~~gs~iiiTtr~~~~~~-----------------~l~~~ea~~Lf~~~ 142 (459)
|-++|+||..... ..-|+.+...-.. ..+=.+||++|-+..... ..+.+.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 6689999985421 1223333332111 134458888888755443 56889999998887
Q ss_pred HccCCCC------------CC----CchHHHHHHHHHhhcCCChHHHHHHhhhhhcccch
Q 040680 143 AFEQGVE------------PR----GSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIE 186 (459)
Q Consensus 143 ~~~~~~~------------~~----~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~ 186 (459)
....... .. ...........++.+||=-.-+..+++.++.+.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 7543110 00 01233445677888999999999999999887754
No 461
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.67 E-value=0.011 Score=51.46 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=22.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999999873
No 462
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.66 E-value=0.0092 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=22.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.++|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 569999999999999999999983
No 463
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.13 Score=48.59 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|..|.|||||++.++..
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999863
No 464
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.65 E-value=0.13 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+-..++|+|..|.|||||++.++..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999873
No 465
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.65 E-value=0.061 Score=57.27 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|+|+.|.||||+.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47999999999999999998875
No 466
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.65 E-value=0.0087 Score=56.89 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+..++++++|++|+||||||..+++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999983
No 467
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.65 E-value=0.07 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..-|.|+|.+|+|||++|+.+++
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45578999999999999999976
No 468
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.65 E-value=0.1 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=20.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 469
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.64 E-value=0.085 Score=56.32 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-..|+|+|..|+|||||++.+..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999976
No 470
>PRK08356 hypothetical protein; Provisional
Probab=95.64 E-value=0.011 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=22.5
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHh
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVY 26 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~ 26 (459)
|-....+|+|.|++|+||||+|+.+.
T Consensus 1 ~~~~~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 1 MGVEKMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 44556789999999999999999994
No 471
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.63 E-value=0.069 Score=50.52 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=46.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC-CcccHHHHHHHHHHHhccc-------cCCccCH-----H
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS-DIFYHKAMLEKIIAFVAYR-------EFSKHDL-----N 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 71 (459)
-..++|.|..|+|||||.+.++.... . +..+..-+. +..+..++.......-... ....... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999998422 1 222333332 3334555554444432110 0111111 1
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1111222333 478999999998
No 472
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.15 Score=52.39 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|+.|+|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 473
>PRK05922 type III secretion system ATPase; Validated
Probab=95.61 E-value=0.062 Score=52.75 Aligned_cols=85 Identities=9% Similarity=0.088 Sum_probs=46.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC-cccHHHHHHHHHHHhcccc------CCcc-CH-----H
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD-IFYHKAMLEKIIAFVAYRE------FSKH-DL-----N 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~-~~-----~ 71 (459)
-..++|.|..|+|||||.+.+++... -+..+++-++. .......+.+......... .... .. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999997421 12233332222 2333444444443322111 0111 11 1
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233443 478999999999
No 474
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.61 E-value=0.13 Score=54.69 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-..|+|+|..|+|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 475
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.61 E-value=0.06 Score=50.94 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=34.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-ccHHHHHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-FYHKAMLEKI 56 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 56 (459)
-..++|.|..|+|||+|+.+++++. +-+.++++-++.. ..+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3568999999999999999999842 2246777766654 3455555554
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.60 E-value=0.049 Score=53.47 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=49.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc------CCccC------HHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE------FSKHD------LNK 72 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~------~~~ 72 (459)
-+.++|+|..|+|||||+..++.... ....++.+...+.....++..+.+..-+... ....+ ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 45789999999999999999988432 1224444433344556566555544421110 01111 111
Q ss_pred HHHHHHhhc--CCceEEEEEeCCC
Q 040680 73 LQEVHHQKI--DRKKYLLVLDDVW 94 (459)
Q Consensus 73 ~~~~l~~~l--~~~~~LlvlDdv~ 94 (459)
....+.+++ +++++|+++|++-
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchH
Confidence 122233333 4789999999983
No 477
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.60 E-value=0.014 Score=55.01 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=27.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCccc
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFY 48 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~ 48 (459)
|++-+.|-||+||||+|.+.+-. ...+=..+.-++.....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCcc
Confidence 78999999999999999888763 322223355555444433
No 478
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.011 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|.|+|++|+|||||+..+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 478899999999999999999976
No 479
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.60 E-value=0.0085 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.|.|+|+.|+||||+|+.++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4588899999999999999998
No 480
>PRK08149 ATP synthase SpaL; Validated
Probab=95.59 E-value=0.078 Score=52.00 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=47.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC-CcccHHHHHHHHHHHhccc-------cCCccCH-----H
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS-DIFYHKAMLEKIIAFVAYR-------EFSKHDL-----N 71 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 71 (459)
-..++|+|.+|+|||||+..+++.... +.+++..+. +..+..++..+........ ....... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 457899999999999999999874221 222333232 2334555555555432111 0111111 1
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 040680 72 KLQEVHHQKI--DRKKYLLVLDDV 93 (459)
Q Consensus 72 ~~~~~l~~~l--~~~~~LlvlDdv 93 (459)
.....+.+++ +++++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1122223333 478999999999
No 481
>PHA02774 E1; Provisional
Probab=95.59 E-value=0.039 Score=55.56 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=28.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI 43 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~ 43 (459)
|....+.|+|++|.|||.+|..+.+ ... -..+.|++.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~--~L~--G~vi~fvN~ 468 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIK--FLK--GKVISFVNS 468 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH--HhC--CCEEEEEEC
Confidence 3456899999999999999999998 332 234556664
No 482
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.59 E-value=0.047 Score=50.02 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=30.7
Q ss_pred eeEEeecCCCCcHHHHH-HHHhCCcccccCCCeE-EEEEeCCc-ccHHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVT-QLVYNDETVKNHFDLR-IWMCISDI-FYHKAMLEKIIA 58 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~ 58 (459)
+-++|.|.+|+|||+|| ..+.+. . .-+.+ +++-++.. ....++.+++..
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~ 121 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEE 121 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHh
Confidence 46789999999999996 556552 1 22333 55555544 345555555553
No 483
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.58 E-value=0.3 Score=41.02 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEeecCCCCcHHHHHHHHhCC
Q 040680 8 FLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~ 28 (459)
|+++|.+|+|||+|+..+.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 484
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.57 E-value=0.034 Score=54.92 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=31.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAML 53 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 53 (459)
.-..++|+|..|+|||||++.+..... .-.+++++..-+..+..++.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Gerg~ev~e~~ 203 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGERGREVREFI 203 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEecCCccHHHHH
Confidence 456899999999999999999887322 12355555443444444443
No 485
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.56 E-value=0.064 Score=44.73 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEeecCCCCcHHHHHHHHhCC
Q 040680 8 FLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~ 28 (459)
|+|+|.+|+|||||...+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999886
No 486
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.56 E-value=0.029 Score=49.47 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=49.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccC---CccCHHHHHHHHHhh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF---SKHDLNKLQEVHHQK 80 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 80 (459)
.+.++.+.|.+|+||||++..+.. ... ....+.++...-.........+... ..... .......+...+...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~--~~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~ 88 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLE--EFG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLIEY 88 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHH--HT---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhh--hcc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999998877 332 3456666644322222122222222 11110 111223344444444
Q ss_pred cCCceEEEEEeCCCCCChhhHHHHHHhhccCC
Q 040680 81 IDRKKYLLVLDDVWIENCDEWLKLETLLRNSA 112 (459)
Q Consensus 81 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~ 112 (459)
...+++=+|+|...... .....+...+...+
T Consensus 89 a~~~~~nii~E~tl~~~-~~~~~~~~~~k~~G 119 (199)
T PF06414_consen 89 AIENRYNIIFEGTLSNP-SKLRKLIREAKAAG 119 (199)
T ss_dssp HHHCT--EEEE--TTSS-HHHHHHHHHHHCTT
T ss_pred HHHcCCCEEEecCCCCh-hHHHHHHHHHHcCC
Confidence 44566778889886532 34444555555433
No 487
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.55 E-value=0.0099 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|+|+|.|-||+||||++..++.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 6799999999999999888877
No 488
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.54 E-value=0.062 Score=46.39 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=63.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC---cccHHHHHHHHHHHhc----ccc--CCccC------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD---IFYHKAMLEKIIAFVA----YRE--FSKHD------ 69 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~----~~~--~~~~~------ 69 (459)
...|-|+|..|-||||.|..++- +...+=-.+..+-+-. ...-...+..+ ..+. +.. ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 46889999999999999998887 3333222233222211 11222222221 0010 000 00011
Q ss_pred -HHHHHHHHHhhcCC-ceEEEEEeCCCC---CChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 70 -LNKLQEVHHQKIDR-KKYLLVLDDVWI---ENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 70 -~~~~~~~l~~~l~~-~~~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
.....+..++.+.. +-=++|||.+-. ...-..+.+...+.....+..||+|=|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122333444444 445999999832 12234567778888788888999999975
No 489
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.54 E-value=0.065 Score=55.39 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=59.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC---CeEEEEEeCCcccHHHHHHHHHHHhccccCC---ccCHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF---DLRIWMCISDIFYHKAMLEKIIAFVAYREFS---KHDLNKLQEVH 77 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 77 (459)
..++..|.|.+|.||||+++.+.. ...... ...+.+..........+.+.+-..+..-... ..........+
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~Ti 243 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTL 243 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHH
Confidence 367899999999999999988876 332211 2456665555544555554444332211000 00000012223
Q ss_pred HhhcCC------------ce---EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEee
Q 040680 78 HQKIDR------------KK---YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVAT 121 (459)
Q Consensus 78 ~~~l~~------------~~---~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt 121 (459)
++.+.. .+ =++|+|.+...+......+... ..+++|+|+.=
T Consensus 244 HrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 244 HRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred HHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHh---cccCCEEEEec
Confidence 332211 11 2899999866554444444444 34567776653
No 490
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.53 E-value=0.16 Score=53.05 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+-..++|+|.+|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999976
No 491
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.035 Score=56.96 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=44.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
+.=|.+||++|.|||-+|++|+. +..- -|++|... + ++...- ..+.+...+...+.-..+
T Consensus 705 RSGILLYGPPGTGKTLlAKAVAT--EcsL-----~FlSVKGP----E----LLNMYV-----GqSE~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVAT--ECSL-----NFLSVKGP----E----LLNMYV-----GQSEENVREVFERARSAA 764 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHh--hcee-----eEEeecCH----H----HHHHHh-----cchHHHHHHHHHHhhccC
Confidence 34477999999999999999998 3332 34555543 2 222221 222333444444444568
Q ss_pred eEEEEEeCCCC
Q 040680 85 KYLLVLDDVWI 95 (459)
Q Consensus 85 ~~LlvlDdv~~ 95 (459)
+|.|.||.++.
T Consensus 765 PCVIFFDELDS 775 (953)
T KOG0736|consen 765 PCVIFFDELDS 775 (953)
T ss_pred CeEEEeccccc
Confidence 99999999864
No 492
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.50 E-value=0.038 Score=55.85 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=32.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
|...++.|.|.+|+||||||.+++.. ...+-..++|++....
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES 302 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC
Confidence 45688999999999999999999983 3333356788876654
No 493
>PRK14530 adenylate kinase; Provisional
Probab=95.50 E-value=0.011 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=20.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.|.|+|++|+||||+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 494
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.48 E-value=0.02 Score=54.58 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+..++.|+|.+|+||||+.+++...
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHH
Confidence 4678999999999999999998763
No 495
>PRK13409 putative ATPase RIL; Provisional
Probab=95.48 E-value=0.12 Score=53.59 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=62.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc-cC--CC-eEEEEEeC----CcccHHHH-------------HHHHHHHhccc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK-NH--FD-LRIWMCIS----DIFYHKAM-------------LEKIIAFVAYR 63 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~--f~-~~~wv~~~----~~~~~~~~-------------~~~i~~~l~~~ 63 (459)
-.+++|+|..|+|||||++.++....-. +. ++ .+.++.-. ...++.+. ..++++.++..
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 4589999999999999999999742111 10 11 11122110 00112111 12233333221
Q ss_pred c-----CCc-cCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC--CCCcEEEEeecchhhhc
Q 040680 64 E-----FSK-HDLNKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS--AGGSNIIVATRSERVAR 128 (459)
Q Consensus 64 ~-----~~~-~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~~~ 128 (459)
+ ... +.-+...-.+.+.+..+.-++++|.--. .|......+...+... ..|..||++|.+...+.
T Consensus 445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1 011 1122222334555666777999997532 2334445555555543 23667888888865443
No 496
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.014 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999888776
No 497
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.098 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
++=|.++|++|.|||-||++++-.
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcc
Confidence 566889999999999999999984
No 498
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.48 E-value=0.025 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+|+|.|+.|+||||+|+.+++
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999988
No 499
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00058 Score=61.19 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCC
Q 040680 339 HKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADG 418 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 418 (459)
+.+.+.|+.+||+ ...+.-+.+++.|+.|.|+- ++++.+..-. .+++|+.|+|.. +.+.++....-
T Consensus 18 l~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSv-NkIssL~pl~-----rCtrLkElYLRk-N~I~sldEL~Y----- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDISICEKMPLLEVLSLSV-NKISSLAPLQ-----RCTRLKELYLRK-NCIESLDELEY----- 83 (388)
T ss_pred HHHhhhhcccCCC--ccHHHHHHhcccceeEEeec-cccccchhHH-----HHHHHHHHHHHh-cccccHHHHHH-----
Confidence 3566777777773 33344456777888888875 3455443322 667777777776 33444432110
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCCCCCC---------CCCCcccee
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLILIPL---------YPYLETDWR 457 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~---------l~~L~~~L~ 457 (459)
..++|+|+.|.|..||.-+.=+. ||+|+ +|+
T Consensus 84 -------LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk-KLD 123 (388)
T KOG2123|consen 84 -------LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK-KLD 123 (388)
T ss_pred -------HhcCchhhhHhhccCCcccccchhHHHHHHHHcccch-hcc
Confidence 01678888888888777765554 77777 664
No 500
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.48 E-value=0.067 Score=56.78 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=58.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-|.|+|..|+|||++|+.+++... +.. ...+.++..... ...+...++....+...+ .. ......+. .. .
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~-~~~v~i~c~~~~-~~~~~~~lfg~~~~~~~g-~~-~~~~g~le--~a-~ 470 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSG-RNN-RRMVKMNCAAMP-AGLLESDLFGHERGAFTG-AS-AQRIGRFE--LA-D 470 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcC-CCC-CCeEEEecccCC-hhHhhhhhcCcccccccc-cc-cchhhHHH--hc-C
Confidence 45688999999999999999988421 111 233444444322 122222232221111000 00 01111121 11 2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCC-----------CCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSA-----------GGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~ 123 (459)
.-.|+||++..........+...+.... .+.|||.||..
T Consensus 471 ~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 471 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 3469999998776666667777664321 34588888754
Done!