Query 040680
Match_columns 459
No_of_seqs 324 out of 2561
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-36 3.7E-41 310.4 20.5 246 4-264 151-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 5.3E-30 1.8E-34 286.6 20.0 246 3-264 145-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1E-29 3.5E-34 263.9 14.9 200 4-233 149-382 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.6E-28 2.9E-32 248.0 19.4 242 4-261 146-450 (591)
5 4fcg_A Uncharacterized protein 99.7 2E-18 6.9E-23 164.3 9.9 173 265-458 116-308 (328)
6 4fcg_A Uncharacterized protein 99.7 2E-17 7E-22 157.3 11.2 172 265-459 93-285 (328)
7 2o6q_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 130.4 15.5 150 270-458 55-212 (270)
8 2xwt_C Thyrotropin receptor; s 99.6 1.1E-14 3.8E-19 131.9 11.1 164 271-458 50-233 (239)
9 4ezg_A Putative uncharacterize 99.6 1.8E-14 6E-19 126.5 11.6 145 272-458 40-188 (197)
10 1p9a_G Platelet glycoprotein I 99.5 7.2E-14 2.5E-18 130.3 14.6 149 269-458 48-202 (290)
11 3rfs_A Internalin B, repeat mo 99.5 8.4E-14 2.9E-18 128.7 14.5 92 336-447 129-222 (272)
12 3m19_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 125.8 15.2 141 266-447 27-171 (251)
13 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 126.7 15.4 153 265-458 28-188 (270)
14 3zyj_A Leucine-rich repeat-con 99.5 1.3E-13 4.4E-18 136.6 14.6 166 270-458 106-286 (440)
15 1ozn_A Reticulon 4 receptor; N 99.5 1.8E-13 6.3E-18 127.3 14.7 149 270-458 74-232 (285)
16 3zyj_A Leucine-rich repeat-con 99.5 1.1E-13 3.7E-18 137.2 13.8 166 268-458 80-262 (440)
17 3zyi_A Leucine-rich repeat-con 99.5 9.9E-14 3.4E-18 138.0 13.5 166 268-458 91-273 (452)
18 3zyi_A Leucine-rich repeat-con 99.5 1.3E-13 4.5E-18 137.1 14.3 166 269-458 116-297 (452)
19 1ozn_A Reticulon 4 receptor; N 99.5 2E-13 6.8E-18 127.1 14.3 150 270-458 50-208 (285)
20 1ogq_A PGIP-2, polygalacturona 99.5 3.9E-14 1.3E-18 133.8 8.7 171 267-458 116-298 (313)
21 1h6u_A Internalin H; cell adhe 99.5 1.7E-13 5.9E-18 129.0 12.7 158 271-458 58-224 (308)
22 1ogq_A PGIP-2, polygalacturona 99.5 3.4E-14 1.1E-18 134.2 7.1 172 266-458 91-275 (313)
23 1p9a_G Platelet glycoprotein I 99.5 5.1E-13 1.8E-17 124.5 15.0 151 265-458 22-179 (290)
24 1h6t_A Internalin B; cell adhe 99.5 2.2E-13 7.4E-18 127.2 12.0 140 272-457 64-206 (291)
25 1h6u_A Internalin H; cell adhe 99.5 3.7E-13 1.3E-17 126.7 13.0 148 272-448 81-234 (308)
26 4eco_A Uncharacterized protein 99.5 3.9E-14 1.3E-18 146.9 6.8 128 268-402 198-363 (636)
27 2z80_A TOLL-like receptor 2, v 99.5 9.6E-14 3.3E-18 133.4 9.0 46 271-317 71-117 (353)
28 4ecn_A Leucine-rich repeat pro 99.5 9.3E-14 3.2E-18 147.4 9.4 137 268-413 440-615 (876)
29 3m19_A Variable lymphocyte rec 99.5 6.3E-13 2.1E-17 121.3 13.8 140 268-444 51-193 (251)
30 2v9t_B SLIT homolog 2 protein 99.4 8.4E-13 2.9E-17 117.8 13.1 138 265-441 23-163 (220)
31 2z66_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 126.4 11.3 165 273-458 75-255 (306)
32 1m9s_A Internalin B; cell inva 99.4 4.6E-13 1.6E-17 137.1 12.7 81 271-373 60-140 (605)
33 2xwt_C Thyrotropin receptor; s 99.4 3.8E-13 1.3E-17 121.7 10.6 148 271-443 75-239 (239)
34 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 117.1 14.0 140 265-444 31-173 (229)
35 3e6j_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 118.1 12.8 139 278-458 21-166 (229)
36 3rfs_A Internalin B, repeat mo 99.4 1.6E-12 5.6E-17 120.0 14.4 148 271-458 58-212 (272)
37 1xeu_A Internalin C; cellular 99.4 1.3E-12 4.4E-17 120.0 13.6 109 271-409 36-144 (263)
38 2z66_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 124.4 12.2 158 266-442 91-260 (306)
39 3rgz_A Protein brassinosteroid 99.4 4.8E-13 1.7E-17 141.8 11.9 30 428-458 678-711 (768)
40 2id5_A Lingo-1, leucine rich r 99.4 9.1E-13 3.1E-17 132.0 12.9 183 268-458 72-279 (477)
41 2o6s_A Variable lymphocyte rec 99.4 2.8E-12 9.5E-17 113.4 14.3 143 266-447 20-165 (208)
42 2z62_A TOLL-like receptor 4, v 99.4 1.1E-12 3.6E-17 121.5 12.1 169 271-458 47-231 (276)
43 2id5_A Lingo-1, leucine rich r 99.4 1.2E-12 4.1E-17 131.1 13.2 171 268-458 48-231 (477)
44 2z80_A TOLL-like receptor 2, v 99.4 8.3E-13 2.8E-17 126.8 11.4 169 265-458 43-229 (353)
45 3oja_A Leucine-rich immune mol 99.4 2.9E-13 9.8E-18 135.7 7.9 165 268-458 50-244 (487)
46 2z62_A TOLL-like receptor 4, v 99.4 1.1E-12 3.8E-17 121.4 11.3 138 265-440 19-159 (276)
47 2v9t_B SLIT homolog 2 protein 99.4 3.4E-12 1.2E-16 113.9 13.9 140 279-458 14-159 (220)
48 4fmz_A Internalin; leucine ric 99.4 2.1E-12 7.1E-17 123.7 12.9 158 272-458 62-228 (347)
49 2ell_A Acidic leucine-rich nuc 99.4 8.3E-13 2.8E-17 112.5 8.8 135 273-448 21-164 (168)
50 2v70_A SLIT-2, SLIT homolog 2 99.4 3E-12 1E-16 114.2 12.8 138 265-442 23-165 (220)
51 3oja_B Anopheles plasmodium-re 99.4 1.8E-12 6E-17 133.5 12.8 39 272-310 119-158 (597)
52 3o6n_A APL1; leucine-rich repe 99.4 2.4E-12 8.3E-17 125.3 13.2 40 271-310 112-152 (390)
53 3rgz_A Protein brassinosteroid 99.4 1.9E-12 6.4E-17 137.3 13.2 98 333-448 625-722 (768)
54 4eco_A Uncharacterized protein 99.4 3.3E-13 1.1E-17 139.9 7.0 115 289-410 196-322 (636)
55 2xot_A Amphoterin-induced prot 99.4 3.1E-12 1.1E-16 123.2 13.1 147 265-448 30-180 (361)
56 3o6n_A APL1; leucine-rich repe 99.4 2E-12 6.8E-17 126.0 11.8 114 266-402 58-175 (390)
57 2z81_A CD282 antigen, TOLL-lik 99.4 9.4E-13 3.2E-17 134.2 9.8 115 268-402 42-158 (549)
58 3oja_B Anopheles plasmodium-re 99.4 3.1E-12 1E-16 131.7 13.4 82 268-350 91-181 (597)
59 3vq2_A TLR4, TOLL-like recepto 99.4 2.1E-12 7.1E-17 133.3 11.8 169 269-458 369-552 (606)
60 4ezg_A Putative uncharacterize 99.4 9.6E-13 3.3E-17 115.3 7.9 137 265-441 56-192 (197)
61 3o53_A Protein LRIM1, AGAP0063 99.4 6.3E-13 2.1E-17 125.7 7.1 164 269-458 51-244 (317)
62 1h6t_A Internalin B; cell adhe 99.4 2.2E-12 7.5E-17 120.3 10.5 141 272-458 42-185 (291)
63 4g8a_A TOLL-like receptor 4; l 99.4 2E-12 6.7E-17 134.0 11.1 142 265-447 43-189 (635)
64 1wwl_A Monocyte differentiatio 99.4 1.3E-12 4.5E-17 123.2 8.8 166 267-458 110-303 (312)
65 1xku_A Decorin; proteoglycan, 99.3 4.7E-12 1.6E-16 120.3 11.5 168 270-458 70-270 (330)
66 4fmz_A Internalin; leucine ric 99.3 5.6E-12 1.9E-16 120.7 11.8 158 272-458 173-340 (347)
67 4ecn_A Leucine-rich repeat pro 99.3 1.9E-12 6.4E-17 137.4 9.1 181 268-458 481-704 (876)
68 2ft3_A Biglycan; proteoglycan, 99.3 1.1E-11 3.9E-16 117.8 13.5 69 360-448 213-281 (332)
69 1xku_A Decorin; proteoglycan, 99.3 1.4E-11 4.7E-16 117.1 14.0 158 268-448 92-280 (330)
70 2z7x_B TOLL-like receptor 1, v 99.3 1E-11 3.5E-16 125.7 13.8 147 273-458 321-475 (520)
71 4glp_A Monocyte differentiatio 99.3 1.8E-12 6.2E-17 122.1 7.7 148 273-458 142-301 (310)
72 3vq2_A TLR4, TOLL-like recepto 99.3 4.4E-12 1.5E-16 130.9 11.1 167 271-458 345-528 (606)
73 3bz5_A Internalin-J, INLJ; leu 99.3 1.6E-11 5.5E-16 121.9 14.6 153 271-458 59-219 (457)
74 1m9s_A Internalin B; cell inva 99.3 5.9E-12 2E-16 128.9 11.7 155 272-458 39-204 (605)
75 3t6q_A CD180 antigen; protein- 99.3 1.6E-11 5.6E-16 126.6 14.7 128 270-402 272-410 (606)
76 3v47_A TOLL-like receptor 5B a 99.3 1.2E-11 4E-16 123.0 13.0 104 334-458 293-402 (455)
77 2o6s_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 106.5 14.3 139 279-458 10-155 (208)
78 2z63_A TOLL-like receptor 4, v 99.3 6.7E-12 2.3E-16 128.4 11.4 103 335-458 416-525 (570)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.7E-11 9.2E-16 123.8 15.2 147 273-458 350-504 (562)
80 4ay9_X Follicle-stimulating ho 99.3 1.1E-11 3.7E-16 118.9 11.4 185 265-458 21-230 (350)
81 3bz5_A Internalin-J, INLJ; leu 99.3 1.5E-11 5E-16 122.2 12.7 156 269-458 35-198 (457)
82 2z81_A CD282 antigen, TOLL-lik 99.3 8.5E-12 2.9E-16 127.1 11.1 145 265-448 17-166 (549)
83 1xeu_A Internalin C; cellular 99.3 9.3E-12 3.2E-16 114.2 10.2 135 266-447 54-188 (263)
84 3t6q_A CD180 antigen; protein- 99.3 2.5E-11 8.6E-16 125.2 14.6 175 277-458 255-456 (606)
85 2qen_A Walker-type ATPase; unk 99.3 5.8E-11 2E-15 113.6 15.8 163 6-180 32-249 (350)
86 2v70_A SLIT-2, SLIT homolog 2 99.3 2.9E-11 1E-15 107.8 12.7 139 279-458 14-160 (220)
87 1jl5_A Outer protein YOPM; leu 99.3 2.9E-11 9.8E-16 120.0 13.9 150 276-458 131-284 (454)
88 1w5s_A Origin recognition comp 99.3 3.2E-11 1.1E-15 118.3 12.5 216 4-232 49-320 (412)
89 1o6v_A Internalin A; bacterial 99.2 4.3E-11 1.5E-15 119.4 13.5 156 272-458 86-250 (466)
90 2xot_A Amphoterin-induced prot 99.2 1.5E-11 5E-16 118.5 9.7 140 270-441 57-200 (361)
91 2wfh_A SLIT homolog 2 protein 99.2 5.8E-11 2E-15 103.5 12.6 113 265-402 22-136 (193)
92 3v47_A TOLL-like receptor 5B a 99.2 3.1E-11 1.1E-15 119.9 12.2 108 276-402 30-139 (455)
93 1ziw_A TOLL-like receptor 3; i 99.2 3.5E-11 1.2E-15 125.9 13.1 151 271-458 44-202 (680)
94 1dce_A Protein (RAB geranylger 99.2 4.9E-13 1.7E-17 136.1 -1.0 38 273-310 346-383 (567)
95 1o6v_A Internalin A; bacterial 99.2 3.1E-11 1.1E-15 120.4 11.9 160 267-458 60-228 (466)
96 2ft3_A Biglycan; proteoglycan, 99.2 6.5E-11 2.2E-15 112.6 13.5 29 428-458 191-224 (332)
97 1wwl_A Monocyte differentiatio 99.2 1.6E-11 5.6E-16 115.6 9.2 167 274-458 93-281 (312)
98 2ast_B S-phase kinase-associat 99.2 2.5E-12 8.5E-17 122.5 3.1 42 269-310 111-153 (336)
99 2z63_A TOLL-like receptor 4, v 99.2 3.7E-11 1.3E-15 122.9 11.9 103 277-402 29-134 (570)
100 2fna_A Conserved hypothetical 99.2 2.8E-10 9.4E-15 109.1 17.4 164 6-182 31-255 (357)
101 2je0_A Acidic leucine-rich nuc 99.2 8E-12 2.7E-16 104.1 5.7 126 274-439 15-149 (149)
102 1ziw_A TOLL-like receptor 3; i 99.2 1E-10 3.6E-15 122.3 15.5 163 268-448 397-577 (680)
103 4glp_A Monocyte differentiatio 99.2 1.3E-11 4.5E-16 116.2 7.5 156 268-458 107-279 (310)
104 1w8a_A SLIT protein; signaling 99.2 9.2E-11 3.1E-15 102.1 12.2 114 266-402 21-136 (192)
105 3g06_A SSPH2 (leucine-rich rep 99.2 1.5E-10 5.2E-15 118.7 15.7 101 267-381 54-157 (622)
106 4ay9_X Follicle-stimulating ho 99.2 2.5E-11 8.7E-16 116.3 9.2 151 269-458 97-253 (350)
107 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 105.6 6.8 131 270-441 13-151 (176)
108 2wfh_A SLIT homolog 2 protein 99.2 7.8E-11 2.7E-15 102.6 11.5 124 279-442 13-138 (193)
109 3j0a_A TOLL-like receptor 5; m 99.2 5.8E-11 2E-15 127.2 12.9 41 275-315 23-64 (844)
110 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 4.3E-15 99.8 11.6 126 279-443 10-137 (177)
111 1jl5_A Outer protein YOPM; leu 99.2 8.5E-11 2.9E-15 116.6 12.0 104 340-458 131-244 (454)
112 3j0a_A TOLL-like receptor 5; m 99.2 6.2E-11 2.1E-15 127.0 11.5 43 268-310 40-84 (844)
113 4b8c_D Glucose-repressible alc 99.2 1.2E-11 3.9E-16 129.9 4.8 119 267-410 215-334 (727)
114 2ast_B S-phase kinase-associat 99.2 5.6E-12 1.9E-16 120.0 2.1 103 272-374 89-205 (336)
115 3o53_A Protein LRIM1, AGAP0063 99.1 1.5E-11 5.1E-16 116.2 4.1 132 274-443 118-250 (317)
116 2z7x_B TOLL-like receptor 1, v 99.1 1.2E-10 4E-15 117.9 10.7 139 267-443 339-481 (520)
117 1dce_A Protein (RAB geranylger 99.1 8.7E-11 3E-15 119.5 9.5 147 267-457 400-566 (567)
118 3cvr_A Invasion plasmid antige 99.1 2.9E-10 9.9E-15 115.2 13.2 95 339-458 139-237 (571)
119 1njg_A DNA polymerase III subu 99.1 1.7E-10 5.9E-15 104.1 10.2 95 82-180 124-231 (250)
120 3g06_A SSPH2 (leucine-rich rep 99.1 4.6E-10 1.6E-14 115.1 14.4 64 391-458 220-291 (622)
121 1w8a_A SLIT protein; signaling 99.1 3E-10 1E-14 98.9 11.1 129 279-444 11-140 (192)
122 2qby_B CDC6 homolog 3, cell di 99.1 2.6E-09 8.8E-14 103.6 18.6 210 5-231 45-295 (384)
123 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 3.2E-10 1.1E-14 115.9 12.5 140 267-444 368-511 (562)
124 2v1u_A Cell division control p 99.1 2.5E-09 8.5E-14 103.7 17.9 211 4-230 43-300 (387)
125 1a9n_A U2A', U2A'; complex (nu 99.1 1.3E-10 4.4E-15 99.7 7.2 123 294-458 14-147 (176)
126 3oja_A Leucine-rich immune mol 99.1 3.1E-10 1.1E-14 113.6 9.8 132 274-443 118-250 (487)
127 2ell_A Acidic leucine-rich nuc 99.1 1.4E-10 4.7E-15 98.7 6.0 119 267-411 40-165 (168)
128 3cvr_A Invasion plasmid antige 99.1 1.3E-09 4.4E-14 110.5 13.6 130 266-452 72-202 (571)
129 1ds9_A Outer arm dynein; leuci 99.0 1.4E-12 4.8E-17 114.4 -7.9 113 266-403 38-151 (198)
130 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 92.8 11.3 114 265-403 19-135 (177)
131 2je0_A Acidic leucine-rich nuc 99.0 4.5E-10 1.5E-14 93.4 7.5 120 297-458 15-147 (149)
132 4b8c_D Glucose-repressible alc 99.0 2.2E-10 7.4E-15 120.2 6.0 127 281-447 206-333 (727)
133 2ca6_A RAN GTPase-activating p 99.0 3.4E-11 1.2E-15 117.0 -0.2 170 270-458 88-310 (386)
134 4g8a_A TOLL-like receptor 4; l 99.0 1.5E-09 5.2E-14 112.2 12.0 106 333-458 462-574 (635)
135 2chg_A Replication factor C sm 99.0 1E-08 3.5E-13 91.0 15.0 148 7-175 40-202 (226)
136 2qby_A CDC6 homolog 1, cell di 99.0 6.1E-09 2.1E-13 100.8 14.3 165 4-172 44-240 (386)
137 1fnn_A CDC6P, cell division co 99.0 1.1E-08 3.8E-13 99.1 15.5 163 6-172 45-242 (389)
138 3g39_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 90.3 10.1 100 278-402 11-112 (170)
139 2r9u_A Variable lymphocyte rec 98.9 3.4E-09 1.2E-13 90.5 10.2 99 279-402 15-115 (174)
140 2ca6_A RAN GTPase-activating p 98.8 2.3E-10 7.8E-15 111.2 -0.8 173 266-458 22-251 (386)
141 1ds9_A Outer arm dynein; leuci 98.8 4.6E-11 1.6E-15 104.6 -5.5 123 278-442 25-152 (198)
142 2r9u_A Variable lymphocyte rec 98.8 1.5E-08 5E-13 86.5 8.8 89 265-374 24-115 (174)
143 3g39_A Variable lymphocyte rec 98.8 2E-08 6.8E-13 85.3 8.8 89 265-374 21-112 (170)
144 1sxj_B Activator 1 37 kDa subu 98.7 4.6E-08 1.6E-12 92.2 11.0 152 8-180 45-213 (323)
145 2ifg_A High affinity nerve gro 98.7 5.6E-08 1.9E-12 92.7 9.0 97 281-401 13-112 (347)
146 3goz_A Leucine-rich repeat-con 98.6 5.4E-09 1.8E-13 100.5 0.8 170 272-458 18-232 (362)
147 3goz_A Leucine-rich repeat-con 98.6 1.7E-08 5.8E-13 97.0 3.6 96 331-441 157-264 (362)
148 3sb4_A Hypothetical leucine ri 98.6 2.5E-07 8.7E-12 87.4 10.7 95 339-457 225-327 (329)
149 1iqp_A RFCS; clamp loader, ext 98.5 6.2E-07 2.1E-11 84.5 12.2 148 7-175 48-210 (327)
150 2ifg_A High affinity nerve gro 98.5 1.8E-07 6.1E-12 89.2 8.3 89 265-374 21-113 (347)
151 1z7x_W Ribonuclease inhibitor; 98.5 7.3E-09 2.5E-13 102.9 -2.4 155 268-441 105-295 (461)
152 1jr3_A DNA polymerase III subu 98.5 2E-06 6.8E-11 82.7 14.6 162 5-177 38-221 (373)
153 3te6_A Regulatory protein SIR3 98.5 4.2E-06 1.4E-10 77.8 15.8 137 4-144 44-212 (318)
154 3sb4_A Hypothetical leucine ri 98.4 4.6E-07 1.6E-11 85.6 9.1 74 363-458 225-304 (329)
155 1z7x_W Ribonuclease inhibitor; 98.4 1.3E-08 4.6E-13 101.0 -2.0 139 274-441 254-409 (461)
156 3e4g_A ATP synthase subunit S, 98.4 9.7E-08 3.3E-12 80.4 3.0 92 340-445 61-154 (176)
157 3bos_A Putative DNA replicatio 98.4 5.2E-07 1.8E-11 81.0 7.1 140 4-174 51-214 (242)
158 2p1m_B Transport inhibitor res 98.4 2.9E-08 9.9E-13 101.9 -1.6 29 428-458 287-321 (594)
159 3ogk_B Coronatine-insensitive 98.4 4.3E-08 1.5E-12 100.5 -0.3 33 275-307 219-251 (592)
160 1hqc_A RUVB; extended AAA-ATPa 98.3 1.8E-06 6.3E-11 81.2 10.6 143 5-178 38-212 (324)
161 3ogk_B Coronatine-insensitive 98.3 1.9E-07 6.5E-12 95.7 3.6 103 335-458 238-349 (592)
162 3ec2_A DNA replication protein 98.3 2.1E-06 7.2E-11 73.4 8.3 103 5-124 38-143 (180)
163 2p1m_B Transport inhibitor res 98.3 9.4E-08 3.2E-12 98.0 -0.5 53 390-458 287-345 (594)
164 2chq_A Replication factor C sm 98.2 6.8E-06 2.3E-10 77.0 11.4 143 8-174 41-201 (319)
165 1a5t_A Delta prime, HOLB; zinc 98.2 2.5E-05 8.4E-10 73.8 14.9 85 83-176 107-204 (334)
166 2z4s_A Chromosomal replication 98.2 4.2E-06 1.4E-10 82.2 9.7 148 5-173 130-302 (440)
167 2ra8_A Uncharacterized protein 98.2 1.8E-07 6.2E-12 89.3 -0.3 38 272-309 135-182 (362)
168 1sxj_E Activator 1 40 kDa subu 98.2 7.4E-06 2.5E-10 78.1 10.2 89 83-174 133-234 (354)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.1 2.6E-05 8.9E-10 70.8 13.3 145 4-171 38-215 (262)
170 4fdw_A Leucine rich hypothetic 98.1 1.4E-05 4.7E-10 77.5 12.0 161 270-458 174-352 (401)
171 1sxj_D Activator 1 41 kDa subu 98.1 2.4E-05 8.1E-10 74.5 13.5 155 8-174 61-232 (353)
172 3e4g_A ATP synthase subunit S, 98.1 4.3E-07 1.5E-11 76.5 0.8 69 337-408 82-155 (176)
173 3h4m_A Proteasome-activating n 98.1 1.7E-05 5.7E-10 73.1 11.0 146 4-174 50-228 (285)
174 3pfi_A Holliday junction ATP-d 98.1 6.1E-05 2.1E-09 71.2 14.4 138 5-174 55-224 (338)
175 1sxj_A Activator 1 95 kDa subu 98.1 1.6E-05 5.5E-10 79.8 10.8 163 4-180 76-256 (516)
176 1d2n_A N-ethylmaleimide-sensit 98.0 5.6E-05 1.9E-09 69.1 12.1 24 4-27 63-86 (272)
177 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00021 7.2E-09 67.0 16.2 24 4-27 44-67 (322)
178 2w58_A DNAI, primosome compone 98.0 5.5E-06 1.9E-10 72.2 4.8 100 6-123 55-158 (202)
179 2kjq_A DNAA-related protein; s 98.0 4.5E-06 1.5E-10 68.8 3.9 87 5-123 36-124 (149)
180 3eie_A Vacuolar protein sortin 98.0 5E-05 1.7E-09 71.3 11.6 140 5-169 51-219 (322)
181 1l8q_A Chromosomal replication 97.9 5E-05 1.7E-09 71.4 11.1 142 5-170 37-201 (324)
182 3syl_A Protein CBBX; photosynt 97.9 5.7E-05 1.9E-09 70.4 11.3 123 5-145 67-219 (309)
183 3n70_A Transport activator; si 97.9 4.1E-05 1.4E-09 62.7 8.7 92 5-123 24-115 (145)
184 3un9_A NLR family member X1; l 97.9 7.6E-07 2.6E-11 85.5 -2.4 138 275-441 100-250 (372)
185 3uk6_A RUVB-like 2; hexameric 97.9 0.00017 6E-09 68.9 14.2 84 85-173 190-299 (368)
186 3b9p_A CG5977-PA, isoform A; A 97.9 0.00025 8.6E-09 65.6 14.8 24 4-27 53-76 (297)
187 2ra8_A Uncharacterized protein 97.9 5.1E-06 1.7E-10 79.2 2.8 139 268-441 164-318 (362)
188 3pvs_A Replication-associated 97.9 0.00016 5.5E-09 70.8 13.5 143 6-173 51-211 (447)
189 3u61_B DNA polymerase accessor 97.8 0.00016 5.6E-09 67.8 13.1 152 4-180 47-220 (324)
190 4fdw_A Leucine rich hypothetic 97.8 0.00018 6.1E-09 69.6 13.4 159 275-459 202-378 (401)
191 1jbk_A CLPB protein; beta barr 97.8 3.3E-05 1.1E-09 66.1 7.2 24 5-28 43-66 (195)
192 3d8b_A Fidgetin-like protein 1 97.8 0.00024 8.2E-09 67.6 13.8 24 4-27 116-139 (357)
193 3un9_A NLR family member X1; l 97.8 3.7E-07 1.3E-11 87.7 -5.9 149 276-458 72-246 (372)
194 2qp9_X Vacuolar protein sortin 97.8 9.6E-05 3.3E-09 70.3 10.7 23 5-27 84-106 (355)
195 4b4t_J 26S protease regulatory 97.7 0.0003 1E-08 67.1 12.9 31 3-35 180-210 (405)
196 2cvh_A DNA repair and recombin 97.7 0.00021 7.3E-09 62.7 11.2 86 4-95 19-116 (220)
197 1sxj_C Activator 1 40 kDa subu 97.7 0.0002 7E-09 67.6 11.4 148 8-176 49-212 (340)
198 2zan_A Vacuolar protein sortin 97.7 0.00042 1.4E-08 68.0 13.4 24 4-27 166-189 (444)
199 2p65_A Hypothetical protein PF 97.7 4.7E-05 1.6E-09 64.9 5.8 23 5-27 43-65 (187)
200 3vfd_A Spastin; ATPase, microt 97.7 0.00045 1.5E-08 66.6 13.3 23 5-27 148-170 (389)
201 4b4t_L 26S protease subunit RP 97.6 0.00038 1.3E-08 67.4 12.0 30 3-34 213-242 (437)
202 4fcw_A Chaperone protein CLPB; 97.6 0.00017 5.8E-09 67.2 9.0 95 6-109 48-144 (311)
203 3co5_A Putative two-component 97.6 0.00011 3.6E-09 60.1 6.6 88 5-123 27-115 (143)
204 3cf0_A Transitional endoplasmi 97.6 0.00081 2.8E-08 62.3 13.2 24 4-27 48-71 (301)
205 3t15_A Ribulose bisphosphate c 97.5 0.00014 4.7E-09 67.3 6.8 29 4-34 35-63 (293)
206 4b4t_H 26S protease regulatory 97.5 0.00076 2.6E-08 65.3 12.0 30 3-34 241-270 (467)
207 4b4t_I 26S protease regulatory 97.5 0.00051 1.7E-08 65.8 10.7 30 3-34 214-243 (437)
208 4b4t_M 26S protease regulatory 97.5 0.00048 1.6E-08 66.7 10.3 30 3-34 213-242 (434)
209 2gno_A DNA polymerase III, gam 97.5 0.0011 3.7E-08 61.4 12.3 122 5-143 18-152 (305)
210 2vhj_A Ntpase P4, P4; non- hyd 97.5 6.5E-05 2.2E-09 69.2 3.9 70 4-95 122-193 (331)
211 1lv7_A FTSH; alpha/beta domain 97.5 0.002 6.9E-08 58.0 13.7 23 5-27 45-67 (257)
212 4b4t_K 26S protease regulatory 97.4 0.001 3.4E-08 64.3 11.5 30 3-34 204-233 (428)
213 1in4_A RUVB, holliday junction 97.4 0.0031 1.1E-07 59.3 14.4 41 129-173 179-219 (334)
214 3rw6_A Nuclear RNA export fact 97.3 1.5E-05 5.2E-10 72.1 -1.9 35 275-309 169-206 (267)
215 3hu3_A Transitional endoplasmi 97.3 0.00055 1.9E-08 67.8 8.6 147 3-174 236-412 (489)
216 3rw6_A Nuclear RNA export fact 97.3 0.0001 3.5E-09 66.7 2.8 107 273-399 138-258 (267)
217 2ce7_A Cell division protein F 97.3 0.0022 7.4E-08 63.0 12.5 23 5-27 49-71 (476)
218 2qgz_A Helicase loader, putati 97.3 0.00013 4.5E-09 67.8 3.7 37 5-43 152-189 (308)
219 2b8t_A Thymidine kinase; deoxy 97.2 0.0003 1E-08 61.8 5.2 116 3-126 10-128 (223)
220 3hr8_A Protein RECA; alpha and 97.2 0.00065 2.2E-08 64.1 7.6 86 3-95 59-150 (356)
221 3cf2_A TER ATPase, transitiona 97.2 0.0014 4.7E-08 68.4 10.4 72 4-95 237-308 (806)
222 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00094 3.2E-08 59.0 7.9 116 4-124 22-168 (235)
223 1g5t_A COB(I)alamin adenosyltr 97.2 0.00037 1.3E-08 59.4 4.8 115 6-124 29-163 (196)
224 1xp8_A RECA protein, recombina 97.1 0.0013 4.3E-08 62.5 8.3 85 3-94 72-162 (366)
225 2z43_A DNA repair and recombin 97.1 0.0014 4.7E-08 61.4 8.5 58 3-61 105-166 (324)
226 1n0w_A DNA repair protein RAD5 97.1 0.0012 4.3E-08 58.7 7.7 47 4-50 23-73 (243)
227 2bjv_A PSP operon transcriptio 97.0 0.0021 7.3E-08 58.2 8.9 111 5-123 29-150 (265)
228 1io0_A Tropomodulin; LRR prote 97.0 0.0001 3.5E-09 63.1 0.0 118 271-402 31-161 (185)
229 2zr9_A Protein RECA, recombina 97.0 0.0014 4.9E-08 61.8 7.8 86 3-95 59-150 (349)
230 1v5w_A DMC1, meiotic recombina 97.0 0.0027 9.1E-08 59.9 9.7 57 3-60 120-180 (343)
231 3io5_A Recombination and repai 97.0 0.0019 6.6E-08 59.2 7.9 82 7-95 30-122 (333)
232 2i1q_A DNA repair and recombin 96.9 0.0017 5.9E-08 60.7 7.7 58 3-61 96-167 (322)
233 1ofh_A ATP-dependent HSL prote 96.8 0.0037 1.3E-07 57.8 9.2 23 5-27 50-72 (310)
234 1u94_A RECA protein, recombina 96.8 0.0018 6.3E-08 61.2 6.9 85 3-94 61-151 (356)
235 3m6a_A ATP-dependent protease 96.8 0.002 6.7E-08 64.9 7.4 23 5-27 108-130 (543)
236 1cr0_A DNA primase/helicase; R 96.8 0.0043 1.5E-07 57.2 9.0 39 4-44 34-73 (296)
237 1ojl_A Transcriptional regulat 96.8 0.0012 4.1E-08 61.2 5.1 24 4-27 24-47 (304)
238 1pzn_A RAD51, DNA repair and r 96.8 0.0034 1.2E-07 59.3 8.2 46 3-48 129-178 (349)
239 3trf_A Shikimate kinase, SK; a 96.7 0.00072 2.5E-08 57.6 3.2 27 1-27 1-27 (185)
240 3pxi_A Negative regulator of g 96.7 0.003 1E-07 66.4 8.4 95 7-122 523-628 (758)
241 2pze_A Cystic fibrosis transme 96.7 0.017 5.8E-07 50.9 11.8 24 5-28 34-57 (229)
242 1io0_A Tropomodulin; LRR prote 96.7 0.00014 4.9E-09 62.2 -1.7 123 291-441 28-162 (185)
243 3t61_A Gluconokinase; PSI-biol 96.7 0.00085 2.9E-08 58.1 3.2 26 2-27 15-40 (202)
244 3tau_A Guanylate kinase, GMP k 96.7 0.00098 3.4E-08 58.0 3.5 27 1-27 4-30 (208)
245 2ff7_A Alpha-hemolysin translo 96.7 0.0096 3.3E-07 53.2 10.1 23 5-27 35-57 (247)
246 2x8a_A Nuclear valosin-contain 96.6 0.003 1E-07 57.6 6.3 21 7-27 46-66 (274)
247 2px0_A Flagellar biosynthesis 96.6 0.0036 1.2E-07 57.6 7.0 86 4-93 104-191 (296)
248 1qhx_A CPT, protein (chloramph 96.6 0.0009 3.1E-08 56.5 2.7 23 5-27 3-25 (178)
249 1jr3_D DNA polymerase III, del 96.6 0.043 1.5E-06 51.6 14.4 146 4-175 17-183 (343)
250 1zp6_A Hypothetical protein AT 96.5 0.0015 5E-08 55.9 3.6 26 3-28 7-32 (191)
251 1vma_A Cell division protein F 96.5 0.0072 2.5E-07 55.8 8.4 89 4-94 103-196 (306)
252 2orw_A Thymidine kinase; TMTK, 96.5 0.00079 2.7E-08 57.4 1.6 110 5-125 3-114 (184)
253 3uie_A Adenylyl-sulfate kinase 96.5 0.0013 4.6E-08 56.8 3.1 25 3-27 23-47 (200)
254 3bh0_A DNAB-like replicative h 96.5 0.025 8.7E-07 52.5 11.9 52 4-59 67-118 (315)
255 1qvr_A CLPB protein; coiled co 96.4 0.0078 2.7E-07 64.1 9.3 23 5-27 191-213 (854)
256 3lda_A DNA repair protein RAD5 96.4 0.0074 2.5E-07 57.9 8.1 57 4-61 177-237 (400)
257 1ly1_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 54.6 3.4 23 5-27 2-24 (181)
258 3vaa_A Shikimate kinase, SK; s 96.4 0.0017 5.9E-08 56.0 3.3 24 4-27 24-47 (199)
259 2bbw_A Adenylate kinase 4, AK4 96.4 0.0017 5.8E-08 58.2 3.3 27 1-27 23-49 (246)
260 3lw7_A Adenylate kinase relate 96.4 0.0016 5.5E-08 54.6 3.0 20 6-25 2-21 (179)
261 3kb2_A SPBC2 prophage-derived 96.4 0.0017 5.9E-08 54.3 3.1 22 6-27 2-23 (173)
262 1cke_A CK, MSSA, protein (cyti 96.3 0.0019 6.6E-08 56.9 3.4 27 1-27 1-27 (227)
263 1ixz_A ATP-dependent metallopr 96.3 0.0032 1.1E-07 56.6 4.8 21 7-27 51-71 (254)
264 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0075 2.6E-07 58.6 7.5 50 6-57 152-203 (473)
265 1kgd_A CASK, peripheral plasma 96.3 0.002 6.8E-08 54.6 3.1 23 5-27 5-27 (180)
266 1kag_A SKI, shikimate kinase I 96.3 0.0018 6.2E-08 54.3 2.8 23 5-27 4-26 (173)
267 3a00_A Guanylate kinase, GMP k 96.2 0.002 6.9E-08 54.9 2.9 23 5-27 1-23 (186)
268 1ex7_A Guanylate kinase; subst 96.2 0.0014 4.7E-08 55.8 1.7 22 6-27 2-23 (186)
269 3pxg_A Negative regulator of g 96.2 0.006 2.1E-07 60.1 6.6 23 5-27 201-223 (468)
270 2dhr_A FTSH; AAA+ protein, hex 96.2 0.02 7E-07 56.5 10.3 23 5-27 64-86 (499)
271 3fwy_A Light-independent proto 96.2 0.0025 8.5E-08 59.2 3.5 39 4-44 47-85 (314)
272 4eun_A Thermoresistant glucoki 96.2 0.0027 9.2E-08 54.8 3.3 24 4-27 28-51 (200)
273 3tui_C Methionine import ATP-b 96.2 0.032 1.1E-06 52.6 10.7 54 74-127 171-227 (366)
274 2rhm_A Putative kinase; P-loop 96.1 0.003 1E-07 53.9 3.4 24 4-27 4-27 (193)
275 1iy2_A ATP-dependent metallopr 96.1 0.0043 1.5E-07 56.6 4.6 21 7-27 75-95 (278)
276 3tr0_A Guanylate kinase, GMP k 96.1 0.003 1E-07 54.5 3.4 23 5-27 7-29 (205)
277 1qvr_A CLPB protein; coiled co 96.1 0.0039 1.3E-07 66.4 4.8 98 6-110 589-686 (854)
278 4gp7_A Metallophosphoesterase; 96.1 0.0031 1E-07 53.0 3.2 24 4-27 8-31 (171)
279 3c8u_A Fructokinase; YP_612366 96.1 0.003 1E-07 54.9 3.2 25 3-27 20-44 (208)
280 2grj_A Dephospho-COA kinase; T 96.1 0.0032 1.1E-07 53.9 3.3 26 2-27 9-34 (192)
281 1knq_A Gluconate kinase; ALFA/ 96.1 0.0039 1.3E-07 52.4 3.7 23 5-27 8-30 (175)
282 1y63_A LMAJ004144AAA protein; 96.1 0.0035 1.2E-07 53.2 3.4 24 4-27 9-32 (184)
283 4fs7_A Uncharacterized protein 96.0 0.034 1.2E-06 53.3 10.8 37 271-308 157-194 (394)
284 2qt1_A Nicotinamide riboside k 96.0 0.0037 1.3E-07 54.2 3.6 24 4-27 20-43 (207)
285 3kl4_A SRP54, signal recogniti 96.0 0.034 1.2E-06 53.7 10.5 90 4-95 96-190 (433)
286 2bdt_A BH3686; alpha-beta prot 96.0 0.0035 1.2E-07 53.5 3.3 22 6-27 3-24 (189)
287 4e22_A Cytidylate kinase; P-lo 96.0 0.0039 1.3E-07 56.0 3.7 24 4-27 26-49 (252)
288 2j41_A Guanylate kinase; GMP, 96.0 0.0037 1.3E-07 54.1 3.4 24 4-27 5-28 (207)
289 2qor_A Guanylate kinase; phosp 96.0 0.0032 1.1E-07 54.5 3.0 23 5-27 12-34 (204)
290 4a1f_A DNAB helicase, replicat 96.0 0.017 5.8E-07 53.9 8.1 52 4-59 45-96 (338)
291 1uf9_A TT1252 protein; P-loop, 96.0 0.0038 1.3E-07 53.8 3.4 25 3-27 6-30 (203)
292 1lvg_A Guanylate kinase, GMP k 96.0 0.0031 1.1E-07 54.3 2.8 24 4-27 3-26 (198)
293 3iij_A Coilin-interacting nucl 96.0 0.0034 1.2E-07 53.0 3.0 23 5-27 11-33 (180)
294 3asz_A Uridine kinase; cytidin 96.0 0.0037 1.3E-07 54.3 3.3 24 4-27 5-28 (211)
295 2ze6_A Isopentenyl transferase 96.0 0.0037 1.3E-07 56.2 3.3 22 6-27 2-23 (253)
296 1nks_A Adenylate kinase; therm 96.0 0.0037 1.3E-07 53.3 3.1 22 6-27 2-23 (194)
297 1zuh_A Shikimate kinase; alpha 95.9 0.004 1.4E-07 52.0 3.1 24 4-27 6-29 (168)
298 2iyv_A Shikimate kinase, SK; t 95.9 0.0035 1.2E-07 53.1 2.8 22 6-27 3-24 (184)
299 1kht_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 53.1 3.1 23 5-27 3-25 (192)
300 2yvu_A Probable adenylyl-sulfa 95.9 0.0054 1.8E-07 52.1 4.0 24 4-27 12-35 (186)
301 4a74_A DNA repair and recombin 95.9 0.0097 3.3E-07 52.3 5.8 43 4-46 24-70 (231)
302 2plr_A DTMP kinase, probable t 95.9 0.0089 3E-07 51.8 5.4 23 5-27 4-26 (213)
303 3ice_A Transcription terminati 95.9 0.009 3.1E-07 56.3 5.6 23 5-27 174-196 (422)
304 1ls1_A Signal recognition part 95.9 0.018 6E-07 53.0 7.6 38 4-43 97-134 (295)
305 1via_A Shikimate kinase; struc 95.9 0.0038 1.3E-07 52.5 2.8 22 6-27 5-26 (175)
306 1r6b_X CLPA protein; AAA+, N-t 95.9 0.044 1.5E-06 57.6 11.6 23 5-27 207-229 (758)
307 1jjv_A Dephospho-COA kinase; P 95.9 0.0046 1.6E-07 53.5 3.4 22 6-27 3-24 (206)
308 1ukz_A Uridylate kinase; trans 95.9 0.0054 1.9E-07 52.9 3.8 24 4-27 14-37 (203)
309 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 52.8 3.4 23 5-27 3-25 (196)
310 1ye8_A Protein THEP1, hypothet 95.9 0.0044 1.5E-07 52.3 3.1 22 7-28 2-23 (178)
311 3crm_A TRNA delta(2)-isopenten 95.8 0.0048 1.7E-07 57.1 3.6 27 1-27 1-27 (323)
312 1j8m_F SRP54, signal recogniti 95.8 0.016 5.4E-07 53.3 6.9 89 5-95 98-191 (297)
313 2if2_A Dephospho-COA kinase; a 95.8 0.0043 1.5E-07 53.6 3.0 22 6-27 2-23 (204)
314 2bwj_A Adenylate kinase 5; pho 95.8 0.0039 1.3E-07 53.5 2.6 23 5-27 12-34 (199)
315 3cmu_A Protein RECA, recombina 95.8 0.0073 2.5E-07 68.6 5.4 85 3-94 1425-1515(2050)
316 2c95_A Adenylate kinase 1; tra 95.8 0.0049 1.7E-07 52.7 3.3 24 4-27 8-31 (196)
317 1a7j_A Phosphoribulokinase; tr 95.8 0.0024 8.3E-08 58.6 1.2 27 1-27 1-27 (290)
318 3ney_A 55 kDa erythrocyte memb 95.8 0.0054 1.8E-07 52.5 3.3 24 4-27 18-41 (197)
319 1z6g_A Guanylate kinase; struc 95.8 0.0047 1.6E-07 54.1 3.0 24 4-27 22-45 (218)
320 2ffh_A Protein (FFH); SRP54, s 95.8 0.025 8.4E-07 54.6 8.3 38 4-43 97-134 (425)
321 3dm5_A SRP54, signal recogniti 95.8 0.026 8.9E-07 54.6 8.4 37 4-42 99-135 (443)
322 1q57_A DNA primase/helicase; d 95.7 0.025 8.5E-07 56.3 8.6 52 4-59 241-293 (503)
323 1rz3_A Hypothetical protein rb 95.7 0.0057 2E-07 52.7 3.4 24 4-27 21-44 (201)
324 2jaq_A Deoxyguanosine kinase; 95.7 0.0051 1.7E-07 53.0 3.1 21 7-27 2-22 (205)
325 1odf_A YGR205W, hypothetical 3 95.7 0.0059 2E-07 55.9 3.7 24 4-27 30-53 (290)
326 1e6c_A Shikimate kinase; phosp 95.7 0.0048 1.6E-07 51.6 2.8 22 6-27 3-24 (173)
327 1znw_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 53.1 3.3 24 4-27 19-42 (207)
328 1nn5_A Similar to deoxythymidy 95.7 0.0059 2E-07 53.1 3.4 23 5-27 9-31 (215)
329 3jvv_A Twitching mobility prot 95.7 0.0024 8.1E-08 60.4 0.9 111 4-125 122-232 (356)
330 1htw_A HI0065; nucleotide-bind 95.7 0.0068 2.3E-07 50.0 3.6 24 4-27 32-55 (158)
331 3e70_C DPA, signal recognition 95.7 0.02 7E-07 53.3 7.2 24 4-27 128-151 (328)
332 3aez_A Pantothenate kinase; tr 95.7 0.0062 2.1E-07 56.5 3.6 25 3-27 88-112 (312)
333 1qf9_A UMP/CMP kinase, protein 95.7 0.0066 2.3E-07 51.7 3.6 23 5-27 6-28 (194)
334 2cdn_A Adenylate kinase; phosp 95.7 0.0065 2.2E-07 52.3 3.5 24 4-27 19-42 (201)
335 2jeo_A Uridine-cytidine kinase 95.7 0.0065 2.2E-07 54.2 3.6 24 4-27 24-47 (245)
336 1s96_A Guanylate kinase, GMP k 95.7 0.0061 2.1E-07 53.4 3.3 25 3-27 14-38 (219)
337 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0063 2.1E-07 54.9 3.4 23 5-27 4-26 (260)
338 2f6r_A COA synthase, bifunctio 95.6 0.0066 2.3E-07 55.4 3.6 23 5-27 75-97 (281)
339 3cm0_A Adenylate kinase; ATP-b 95.6 0.0063 2.1E-07 51.6 3.3 23 5-27 4-26 (186)
340 2vli_A Antibiotic resistance p 95.6 0.0042 1.4E-07 52.5 2.1 23 5-27 5-27 (183)
341 3b5x_A Lipid A export ATP-bind 95.6 0.061 2.1E-06 54.5 11.0 24 4-27 368-391 (582)
342 3r20_A Cytidylate kinase; stru 95.6 0.0065 2.2E-07 53.6 3.2 24 4-27 8-31 (233)
343 2ck3_D ATP synthase subunit be 95.6 0.072 2.5E-06 51.7 10.7 53 6-59 154-207 (482)
344 2onk_A Molybdate/tungstate ABC 95.6 0.011 3.7E-07 52.5 4.6 22 6-27 25-46 (240)
345 3tif_A Uncharacterized ABC tra 95.5 0.012 3.9E-07 52.2 4.7 36 4-42 30-65 (235)
346 1r6b_X CLPA protein; AAA+, N-t 95.5 0.0087 3E-07 62.9 4.6 91 6-109 489-582 (758)
347 2xxa_A Signal recognition part 95.5 0.037 1.3E-06 53.7 8.6 39 4-44 99-138 (433)
348 1fx0_B ATP synthase beta chain 95.5 0.045 1.5E-06 53.3 9.1 52 6-58 166-218 (498)
349 2wwf_A Thymidilate kinase, put 95.5 0.008 2.7E-07 52.1 3.6 23 5-27 10-32 (212)
350 3a8t_A Adenylate isopentenyltr 95.5 0.0069 2.4E-07 56.2 3.3 24 5-28 40-63 (339)
351 1uj2_A Uridine-cytidine kinase 95.5 0.0075 2.6E-07 54.1 3.5 23 5-27 22-44 (252)
352 3umf_A Adenylate kinase; rossm 95.5 0.0085 2.9E-07 52.2 3.6 24 4-27 28-51 (217)
353 2c9o_A RUVB-like 1; hexameric 95.5 0.012 4.2E-07 57.7 5.2 23 5-27 63-85 (456)
354 3cf2_A TER ATPase, transitiona 95.5 0.019 6.6E-07 59.9 6.7 72 4-95 510-581 (806)
355 3ake_A Cytidylate kinase; CMP 95.5 0.0084 2.9E-07 51.8 3.5 21 7-27 4-24 (208)
356 2z0h_A DTMP kinase, thymidylat 95.4 0.017 5.8E-07 49.3 5.4 21 7-27 2-22 (197)
357 2v54_A DTMP kinase, thymidylat 95.4 0.009 3.1E-07 51.4 3.6 24 4-27 3-26 (204)
358 2pbr_A DTMP kinase, thymidylat 95.4 0.0079 2.7E-07 51.3 3.1 21 7-27 2-22 (195)
359 2pt5_A Shikimate kinase, SK; a 95.4 0.0081 2.8E-07 49.9 3.1 21 7-27 2-22 (168)
360 3bgw_A DNAB-like replicative h 95.4 0.081 2.8E-06 51.5 10.6 51 4-58 196-246 (444)
361 1xjc_A MOBB protein homolog; s 95.4 0.0099 3.4E-07 49.5 3.5 23 5-27 4-26 (169)
362 1gvn_B Zeta; postsegregational 95.4 0.0076 2.6E-07 55.2 3.0 24 4-27 32-55 (287)
363 1ypw_A Transitional endoplasmi 95.4 0.0079 2.7E-07 63.4 3.5 24 4-27 237-260 (806)
364 2dr3_A UPF0273 protein PH0284; 95.4 0.0095 3.2E-07 53.0 3.6 41 4-46 22-62 (247)
365 3tqc_A Pantothenate kinase; bi 95.4 0.0091 3.1E-07 55.4 3.6 24 4-27 91-114 (321)
366 1zak_A Adenylate kinase; ATP:A 95.4 0.0079 2.7E-07 52.7 3.0 25 3-27 3-27 (222)
367 3l0o_A Transcription terminati 95.4 0.07 2.4E-06 50.3 9.4 23 6-28 176-198 (427)
368 2ehv_A Hypothetical protein PH 95.4 0.0081 2.8E-07 53.5 3.1 41 4-45 29-69 (251)
369 1m7g_A Adenylylsulfate kinase; 95.4 0.0098 3.4E-07 51.7 3.6 24 4-27 24-47 (211)
370 2pcj_A ABC transporter, lipopr 95.3 0.013 4.4E-07 51.5 4.3 23 5-27 30-52 (224)
371 1zd8_A GTP:AMP phosphotransfer 95.3 0.0082 2.8E-07 52.8 3.1 23 5-27 7-29 (227)
372 2pez_A Bifunctional 3'-phospho 95.3 0.0099 3.4E-07 50.1 3.4 24 4-27 4-27 (179)
373 3gfo_A Cobalt import ATP-bindi 95.3 0.013 4.4E-07 53.2 4.3 23 5-27 34-56 (275)
374 3end_A Light-independent proto 95.3 0.014 4.7E-07 54.0 4.7 41 3-45 39-79 (307)
375 4g1u_C Hemin import ATP-bindin 95.3 0.015 5.2E-07 52.5 4.7 23 5-27 37-59 (266)
376 1tue_A Replication protein E1; 95.3 0.0061 2.1E-07 52.2 1.9 25 3-27 56-80 (212)
377 1rj9_A FTSY, signal recognitio 95.3 0.0098 3.3E-07 54.9 3.5 24 4-27 101-124 (304)
378 3lnc_A Guanylate kinase, GMP k 95.3 0.006 2.1E-07 53.9 2.0 23 5-27 27-50 (231)
379 1b0u_A Histidine permease; ABC 95.3 0.015 5.2E-07 52.4 4.7 24 4-27 31-54 (262)
380 4h09_A Hypothetical leucine ri 95.3 0.2 6.9E-06 47.5 12.9 111 273-411 214-327 (379)
381 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.023 7.7E-07 53.1 5.9 81 5-95 171-251 (330)
382 3nwj_A ATSK2; P loop, shikimat 95.2 0.0086 2.9E-07 53.5 2.8 23 5-27 48-70 (250)
383 3pxi_A Negative regulator of g 95.2 0.024 8.1E-07 59.6 6.6 23 5-27 201-223 (758)
384 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.6E-07 51.8 3.3 23 5-27 4-26 (220)
385 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.8E-07 51.6 3.4 23 5-27 4-26 (218)
386 1sgw_A Putative ABC transporte 95.2 0.015 5.1E-07 50.6 4.1 23 5-27 35-57 (214)
387 2i3b_A HCR-ntpase, human cance 95.2 0.0096 3.3E-07 50.7 2.8 23 6-28 2-24 (189)
388 3tlx_A Adenylate kinase 2; str 95.2 0.012 4.1E-07 52.4 3.6 24 4-27 28-51 (243)
389 2olj_A Amino acid ABC transpor 95.2 0.018 6E-07 51.9 4.7 24 4-27 49-72 (263)
390 1gtv_A TMK, thymidylate kinase 95.2 0.0052 1.8E-07 53.4 1.1 22 6-27 1-22 (214)
391 4h09_A Hypothetical leucine ri 95.1 0.17 5.8E-06 48.0 11.8 111 271-409 235-348 (379)
392 3foz_A TRNA delta(2)-isopenten 95.1 0.013 4.3E-07 53.8 3.6 23 5-27 10-32 (316)
393 3llm_A ATP-dependent RNA helic 95.1 0.056 1.9E-06 47.7 7.8 90 5-95 76-187 (235)
394 3d3q_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 55.0 3.3 23 5-27 7-29 (340)
395 1mv5_A LMRA, multidrug resista 95.1 0.019 6.5E-07 51.1 4.6 24 4-27 27-50 (243)
396 2yhs_A FTSY, cell division pro 95.1 0.052 1.8E-06 53.1 8.0 42 4-48 292-333 (503)
397 3fb4_A Adenylate kinase; psych 95.1 0.012 3.9E-07 51.3 3.1 21 7-27 2-22 (216)
398 2ixe_A Antigen peptide transpo 95.1 0.02 6.7E-07 51.9 4.7 24 4-27 44-67 (271)
399 1ji0_A ABC transporter; ATP bi 95.0 0.019 6.4E-07 51.0 4.5 23 5-27 32-54 (240)
400 3b9q_A Chloroplast SRP recepto 95.0 0.013 4.5E-07 53.9 3.6 41 4-47 99-139 (302)
401 1zu4_A FTSY; GTPase, signal re 95.0 0.016 5.4E-07 53.9 4.1 38 4-43 104-141 (320)
402 2f1r_A Molybdopterin-guanine d 95.0 0.0072 2.5E-07 50.6 1.5 23 5-27 2-24 (171)
403 1vpl_A ABC transporter, ATP-bi 95.0 0.021 7.1E-07 51.2 4.7 23 5-27 41-63 (256)
404 1sq5_A Pantothenate kinase; P- 95.0 0.013 4.4E-07 54.3 3.4 24 4-27 79-102 (308)
405 2p5t_B PEZT; postsegregational 95.0 0.0088 3E-07 53.7 2.1 24 4-27 31-54 (253)
406 1g6h_A High-affinity branched- 95.0 0.02 6.8E-07 51.5 4.5 23 5-27 33-55 (257)
407 3dl0_A Adenylate kinase; phosp 95.0 0.013 4.3E-07 51.1 3.1 21 7-27 2-22 (216)
408 2wji_A Ferrous iron transport 94.9 0.017 6E-07 47.7 3.8 24 5-28 3-26 (165)
409 3exa_A TRNA delta(2)-isopenten 94.9 0.014 4.9E-07 53.5 3.4 23 5-27 3-25 (322)
410 2f9l_A RAB11B, member RAS onco 94.9 0.015 5.1E-07 49.8 3.4 28 1-28 1-28 (199)
411 2r62_A Cell division protease 94.9 0.0066 2.2E-07 54.9 1.2 23 5-27 44-66 (268)
412 2cbz_A Multidrug resistance-as 94.9 0.014 4.9E-07 51.7 3.3 24 5-28 31-54 (237)
413 1cp2_A CP2, nitrogenase iron p 94.9 0.019 6.3E-07 51.9 4.1 38 6-45 2-39 (269)
414 2q6t_A DNAB replication FORK h 94.9 0.07 2.4E-06 52.1 8.5 53 4-59 199-251 (444)
415 2yz2_A Putative ABC transporte 94.9 0.023 7.9E-07 51.3 4.7 23 5-27 33-55 (266)
416 2ghi_A Transport protein; mult 94.9 0.022 7.6E-07 51.2 4.5 24 4-27 45-68 (260)
417 2eyu_A Twitching motility prot 94.9 0.015 5.3E-07 52.3 3.5 109 4-125 24-134 (261)
418 4gt6_A Cell surface protein; l 94.8 0.091 3.1E-06 50.3 9.0 37 360-401 330-366 (394)
419 2qi9_C Vitamin B12 import ATP- 94.8 0.021 7.3E-07 50.9 4.2 23 5-27 26-48 (249)
420 1ltq_A Polynucleotide kinase; 94.8 0.016 5.3E-07 53.5 3.4 23 5-27 2-24 (301)
421 3upu_A ATP-dependent DNA helic 94.8 0.039 1.3E-06 54.1 6.5 22 6-27 46-67 (459)
422 2lkc_A Translation initiation 94.8 0.024 8.2E-07 47.3 4.4 27 2-28 5-31 (178)
423 1np6_A Molybdopterin-guanine d 94.8 0.016 5.4E-07 48.6 3.1 23 5-27 6-28 (174)
424 2ihy_A ABC transporter, ATP-bi 94.8 0.023 7.9E-07 51.7 4.4 23 5-27 47-69 (279)
425 3zvl_A Bifunctional polynucleo 94.8 0.016 5.5E-07 56.1 3.5 25 3-27 256-280 (416)
426 3b85_A Phosphate starvation-in 94.7 0.011 3.8E-07 51.2 2.0 23 5-27 22-44 (208)
427 2v9p_A Replication protein E1; 94.7 0.017 5.8E-07 53.1 3.3 25 3-27 124-148 (305)
428 3vr4_D V-type sodium ATPase su 94.7 0.052 1.8E-06 52.3 6.7 88 6-93 152-257 (465)
429 4fs7_A Uncharacterized protein 94.7 0.16 5.6E-06 48.5 10.4 81 336-439 293-375 (394)
430 1svm_A Large T antigen; AAA+ f 94.7 0.017 6E-07 54.8 3.4 25 3-27 167-191 (377)
431 1nlf_A Regulatory protein REPA 94.7 0.016 5.3E-07 52.8 3.0 24 4-27 29-52 (279)
432 2d2e_A SUFC protein; ABC-ATPas 94.7 0.017 5.7E-07 51.7 3.1 23 5-27 29-51 (250)
433 2og2_A Putative signal recogni 94.7 0.019 6.5E-07 54.1 3.6 41 4-47 156-196 (359)
434 3cmu_A Protein RECA, recombina 94.6 0.04 1.4E-06 62.8 6.7 86 3-95 381-472 (2050)
435 4eaq_A DTMP kinase, thymidylat 94.6 0.031 1.1E-06 49.2 4.8 24 4-27 25-48 (229)
436 2qmh_A HPR kinase/phosphorylas 94.6 0.017 6E-07 49.1 2.9 24 5-28 34-57 (205)
437 3j16_B RLI1P; ribosome recycli 94.6 0.16 5.6E-06 51.4 10.5 122 6-127 379-531 (608)
438 3hws_A ATP-dependent CLP prote 94.6 0.014 4.7E-07 55.5 2.5 24 4-27 50-73 (363)
439 1tf7_A KAIC; homohexamer, hexa 94.6 0.019 6.3E-07 57.6 3.5 40 4-45 280-319 (525)
440 1ak2_A Adenylate kinase isoenz 94.6 0.02 6.8E-07 50.6 3.4 23 5-27 16-38 (233)
441 2j37_W Signal recognition part 94.6 0.096 3.3E-06 51.7 8.5 24 4-27 100-123 (504)
442 3nh6_A ATP-binding cassette SU 94.6 0.024 8.2E-07 52.2 3.9 24 4-27 79-102 (306)
443 3cmw_A Protein RECA, recombina 94.5 0.039 1.3E-06 62.0 6.2 86 3-95 381-472 (1706)
444 2zu0_C Probable ATP-dependent 94.5 0.02 7E-07 51.7 3.4 23 5-27 46-68 (267)
445 2r6a_A DNAB helicase, replicat 94.5 0.27 9.1E-06 48.1 11.6 50 4-56 202-251 (454)
446 2qe7_A ATP synthase subunit al 94.5 0.075 2.6E-06 51.8 7.4 49 6-58 163-214 (502)
447 3be4_A Adenylate kinase; malar 94.5 0.02 6.8E-07 49.9 3.2 23 5-27 5-27 (217)
448 1yrb_A ATP(GTP)binding protein 94.5 0.021 7.3E-07 51.2 3.5 23 5-27 14-36 (262)
449 2xb4_A Adenylate kinase; ATP-b 94.5 0.019 6.6E-07 50.3 3.1 21 7-27 2-22 (223)
450 2afh_E Nitrogenase iron protei 94.5 0.024 8.1E-07 51.9 3.8 38 6-45 3-40 (289)
451 2hf9_A Probable hydrogenase ni 94.5 0.022 7.4E-07 49.9 3.4 24 5-28 38-61 (226)
452 3io3_A DEHA2D07832P; chaperone 94.5 0.037 1.3E-06 52.0 5.1 42 3-46 16-59 (348)
453 1e4v_A Adenylate kinase; trans 94.5 0.019 6.6E-07 49.9 3.0 21 7-27 2-22 (214)
454 2pjz_A Hypothetical protein ST 94.5 0.03 1E-06 50.4 4.3 33 5-41 30-62 (263)
455 3eph_A TRNA isopentenyltransfe 94.4 0.021 7E-07 54.4 3.3 23 5-27 2-24 (409)
456 3qf4_A ABC transporter, ATP-bi 94.4 0.14 4.9E-06 51.8 9.7 24 4-27 368-391 (587)
457 3cmw_A Protein RECA, recombina 94.4 0.037 1.3E-06 62.2 5.7 84 3-93 1429-1518(1706)
458 3gqb_B V-type ATP synthase bet 94.4 0.059 2E-06 52.0 6.4 88 6-93 148-260 (464)
459 1p5z_B DCK, deoxycytidine kina 94.4 0.015 5E-07 52.5 2.1 25 3-27 22-46 (263)
460 2zej_A Dardarin, leucine-rich 94.4 0.021 7.1E-07 48.2 2.9 22 7-28 4-25 (184)
461 3fvq_A Fe(3+) IONS import ATP- 94.4 0.031 1.1E-06 52.6 4.4 23 5-27 30-52 (359)
462 4dzz_A Plasmid partitioning pr 94.4 0.035 1.2E-06 47.7 4.5 41 6-48 2-43 (206)
463 2vp4_A Deoxynucleoside kinase; 94.4 0.019 6.5E-07 50.6 2.7 23 5-27 20-42 (230)
464 4a82_A Cystic fibrosis transme 94.3 0.091 3.1E-06 53.2 8.1 24 4-27 366-389 (578)
465 2nq2_C Hypothetical ABC transp 94.3 0.021 7.2E-07 51.1 3.0 24 5-28 31-54 (253)
466 3rfe_A Platelet glycoprotein I 94.3 0.037 1.3E-06 43.8 4.1 52 280-350 12-65 (130)
467 2r8r_A Sensor protein; KDPD, P 94.3 0.028 9.5E-07 49.0 3.6 37 7-45 8-44 (228)
468 1um8_A ATP-dependent CLP prote 94.3 0.017 5.8E-07 55.1 2.5 23 5-27 72-94 (376)
469 4gt6_A Cell surface protein; l 94.3 0.33 1.1E-05 46.4 11.6 83 335-440 283-367 (394)
470 3sr0_A Adenylate kinase; phosp 94.3 0.024 8.2E-07 49.0 3.1 92 7-109 2-98 (206)
471 1q3t_A Cytidylate kinase; nucl 94.3 0.026 8.8E-07 49.9 3.4 24 4-27 15-38 (236)
472 3e1s_A Exodeoxyribonuclease V, 94.3 0.067 2.3E-06 54.0 6.8 23 5-27 204-226 (574)
473 3iqw_A Tail-anchored protein t 94.3 0.048 1.6E-06 50.9 5.4 43 4-48 15-57 (334)
474 3hjn_A DTMP kinase, thymidylat 94.2 0.075 2.6E-06 45.5 6.2 49 7-57 2-50 (197)
475 1oix_A RAS-related protein RAB 94.2 0.024 8.1E-07 48.3 3.0 23 6-28 30-52 (191)
476 4edh_A DTMP kinase, thymidylat 94.2 0.068 2.3E-06 46.4 5.9 23 5-27 6-28 (213)
477 2r9v_A ATP synthase subunit al 94.2 0.089 3.1E-06 51.3 7.1 49 6-58 176-227 (515)
478 3ch4_B Pmkase, phosphomevalona 94.2 0.029 1E-06 47.9 3.4 25 3-27 9-33 (202)
479 2axn_A 6-phosphofructo-2-kinas 94.1 0.03 1E-06 55.8 4.0 25 3-27 33-57 (520)
480 2wsm_A Hydrogenase expression/ 94.1 0.028 9.5E-07 49.0 3.2 24 5-28 30-53 (221)
481 2c61_A A-type ATP synthase non 94.1 0.046 1.6E-06 53.0 4.9 88 6-93 153-258 (469)
482 2wjg_A FEOB, ferrous iron tran 94.1 0.033 1.1E-06 46.9 3.5 24 5-28 7-30 (188)
483 1z47_A CYSA, putative ABC-tran 94.0 0.044 1.5E-06 51.5 4.5 23 5-27 41-63 (355)
484 2zts_A Putative uncharacterize 94.0 0.023 7.8E-07 50.5 2.4 43 3-46 28-70 (251)
485 3cwq_A Para family chromosome 94.0 0.061 2.1E-06 46.5 5.1 40 7-49 2-42 (209)
486 2it1_A 362AA long hypothetical 93.9 0.05 1.7E-06 51.3 4.7 23 5-27 29-51 (362)
487 2yyz_A Sugar ABC transporter, 93.9 0.052 1.8E-06 51.1 4.8 23 5-27 29-51 (359)
488 3rlf_A Maltose/maltodextrin im 93.9 0.047 1.6E-06 51.8 4.5 23 5-27 29-51 (381)
489 1g29_1 MALK, maltose transport 93.9 0.047 1.6E-06 51.7 4.5 23 5-27 29-51 (372)
490 2bbs_A Cystic fibrosis transme 93.8 0.032 1.1E-06 51.0 3.2 25 4-28 63-87 (290)
491 1v43_A Sugar-binding transport 93.8 0.052 1.8E-06 51.4 4.7 23 5-27 37-59 (372)
492 1fx0_A ATP synthase alpha chai 93.8 0.072 2.4E-06 52.0 5.7 48 6-57 164-214 (507)
493 2gj8_A MNME, tRNA modification 93.8 0.037 1.3E-06 46.1 3.4 25 4-28 3-27 (172)
494 3d31_A Sulfate/molybdate ABC t 93.8 0.042 1.4E-06 51.5 4.0 23 5-27 26-48 (348)
495 3thx_A DNA mismatch repair pro 93.8 0.15 5.1E-06 54.3 8.5 21 5-25 662-682 (934)
496 3kjh_A CO dehydrogenase/acetyl 93.7 0.047 1.6E-06 48.5 4.1 38 8-47 3-40 (254)
497 2dyk_A GTP-binding protein; GT 93.7 0.038 1.3E-06 45.0 3.3 23 6-28 2-24 (161)
498 3vkw_A Replicase large subunit 93.7 0.2 6.9E-06 48.3 8.6 25 3-27 159-183 (446)
499 3ug7_A Arsenical pump-driving 93.7 0.067 2.3E-06 50.4 5.2 40 3-44 24-63 (349)
500 2j9r_A Thymidine kinase; TK1, 93.7 0.14 4.8E-06 44.1 6.7 111 5-126 28-140 (214)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-36 Score=310.38 Aligned_cols=246 Identities=15% Similarity=0.204 Sum_probs=192.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC--CcccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhccccC-------CccCHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN--DETVKNHFDLRIWMCISDIF--YHKAMLEKIIAFVAYREF-------SKHDLNK 72 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~-------~~~~~~~ 72 (459)
..++|+|+|||||||||||+++|+ +.+++.+|++++|+++++.. +...++..|+.+++.... ...+.+.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 468999999999999999999997 66899999999999999875 789999999999975421 2234566
Q ss_pred HHHHHHhhcCCc-eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc------------cCChhhhHHHH
Q 040680 73 LQEVHHQKIDRK-KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR------------GLSKGQSWSLF 139 (459)
Q Consensus 73 ~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~------------~l~~~ea~~Lf 139 (459)
+...+.+.++++ |+||||||||+.+...|.. .+||+||||||++.++. +|+.+||++||
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf 302 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFL 302 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHH
Confidence 788999999996 9999999999852212221 27999999999987754 89999999999
Q ss_pred HHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhhcCCchhhHHHHhhccCc
Q 040680 140 ILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQEGNHILPILELSYNHIP 219 (459)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~s~~~L~ 219 (459)
.+.+|.... .+.+++++++|+++|+|+||||+++|+.++.+. ..|...+.+..+.. ....+..++.+||+.||
T Consensus 303 ~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~--w~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~ 375 (549)
T 2a5y_B 303 EAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNKLESR--GLVGVECITPYSYKSLA 375 (549)
T ss_dssp HHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHHHHHH--CSSTTCCCSSSSSSSHH
T ss_pred HHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccch--HHHHHHhHHHhhcc--cHHHHHHHHhccccccc
Confidence 999876532 467888999999999999999999999997652 22322222222222 24578999999999999
Q ss_pred hhHHHHHh-----------hhhccccc---------cc-------C-------------------------CCCCEEEEE
Q 040680 220 SHLHQCFS-----------YCVLFQDV---------IY-------D-------------------------GDGNIVKCK 247 (459)
Q Consensus 220 ~~~k~~f~-----------~l~~~~~~---------~~-------~-------------------------~~~~~~~~~ 247 (459)
..++.||. +|++|+.- .. . ..+...+|.
T Consensus 376 ~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~ 455 (549)
T 2a5y_B 376 MALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFK 455 (549)
T ss_dssp HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEE
T ss_pred HHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEE
Confidence 99999999 99998421 00 0 001234699
Q ss_pred echhHHHHhhhhhcccc
Q 040680 248 IHDLVHDLAGSVSRTEW 264 (459)
Q Consensus 248 ~hdLv~~~~~~~~~~~~ 264 (459)
|||++|+++++++..++
T Consensus 456 mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCHHHHHHHHTTSCTHH
T ss_pred eChHHHHHHHHHHHHHH
Confidence 99999999999987764
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=5.3e-30 Score=286.60 Aligned_cols=246 Identities=18% Similarity=0.281 Sum_probs=188.1
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCccc-ccCC-CeEEEEEeCCcc--cHHHHHHHHHHHhcccc----CCccCHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETV-KNHF-DLRIWMCISDIF--YHKAMLEKIIAFVAYRE----FSKHDLNKLQ 74 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f-~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~----~~~~~~~~~~ 74 (459)
...++|+|+||||+||||||+++|++.+. ..+| +.++|++++... .....++.++..+.... ....+.+.+.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 224 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAK 224 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHH
Confidence 35789999999999999999999997443 5556 588899998854 34455677777776432 2345678888
Q ss_pred HHHHhhcCCc--eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHH
Q 040680 75 EVHHQKIDRK--KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLF 139 (459)
Q Consensus 75 ~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf 139 (459)
+.++..+.++ |+||||||||+. .. +...++|++||||||++.++. +|+.+||++||
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~~~--~~-------~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVWDP--WV-------LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCCCH--HH-------HTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEecCCCH--HH-------HHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHH
Confidence 8999999877 999999999864 22 233478999999999998763 39999999999
Q ss_pred HHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhhhc--------CCchhhHH
Q 040680 140 ILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIKQE--------GNHILPIL 211 (459)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~--------~~~i~~~l 211 (459)
...++... +.+++.+++|+++|+|+||||+++|++++.+. ..|..+++......... ...+..++
T Consensus 296 ~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 368 (1249)
T 3sfz_A 296 SLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAM 368 (1249)
T ss_dssp HHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHH
T ss_pred HHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHH
Confidence 99885332 34456799999999999999999999998776 46776665543222110 12589999
Q ss_pred HHhhccCchhHHHHHhhhhccccc--------------------------------ccCCCCCEEEEEechhHHHHhhhh
Q 040680 212 ELSYNHIPSHLHQCFSYCVLFQDV--------------------------------IYDGDGNIVKCKIHDLVHDLAGSV 259 (459)
Q Consensus 212 ~~s~~~L~~~~k~~f~~l~~~~~~--------------------------------~~~~~~~~~~~~~hdLv~~~~~~~ 259 (459)
++||+.|++..|.||.+|++|+.. .....+...+|+||+++|++++..
T Consensus 369 ~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhh
Confidence 999999999999999999986421 111234445799999999999998
Q ss_pred hcccc
Q 040680 260 SRTEW 264 (459)
Q Consensus 260 ~~~~~ 264 (459)
+.++.
T Consensus 449 ~~~~~ 453 (1249)
T 3sfz_A 449 NRSQL 453 (1249)
T ss_dssp TGGGH
T ss_pred hhHHH
Confidence 77653
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=1e-29 Score=263.89 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=154.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCe-EEEEEeCCcccHHHHHHHHHHHhcccc------CC-----ccCHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDL-RIWMCISDIFYHKAMLEKIIAFVAYRE------FS-----KHDLN 71 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~-----~~~~~ 71 (459)
..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.+.... .. ..+.+
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~le 228 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHH
Confidence 3689999999999999999999987678999985 999999999888888887777543211 00 11234
Q ss_pred HHHHHHHhhc---CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-----------------cCC
Q 040680 72 KLQEVHHQKI---DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-----------------GLS 131 (459)
Q Consensus 72 ~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-----------------~l~ 131 (459)
...+.+++.+ .++|+||||||||+. +.|+.+ + +||+||||||++.++. +|+
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS 299 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcC
Confidence 4555666644 789999999999873 455443 2 7999999999987652 589
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhccc-chhhhHhHhhhhhhhhhhcCCchhhH
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNK-IEAYWLPFRQEELSKIKQEGNHILPI 210 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~-~~~~w~~~~~~~~~~~~~~~~~i~~~ 210 (459)
.+||++||.+... .. ..++..++ |+|+||||+++|+.++.+. +.+.|... ....+..+
T Consensus 300 ~eEA~eLF~~~~g-~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aa 358 (1221)
T 1vt4_I 300 PDEVKSLLLKYLD-CR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTI 358 (1221)
T ss_dssp HHHHHHHHHHHHC-CC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHH
T ss_pred HHHHHHHHHHHcC-CC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHH
Confidence 9999999998842 21 12233343 9999999999999999874 56678642 23468999
Q ss_pred HHHhhccCchhH-HHHHhhhhccc
Q 040680 211 LELSYNHIPSHL-HQCFSYCVLFQ 233 (459)
Q Consensus 211 l~~s~~~L~~~~-k~~f~~l~~~~ 233 (459)
++.||+.|++.. |+||.+|++|+
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFP 382 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFP 382 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSC
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCC
Confidence 999999999999 99999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=8.6e-28 Score=247.98 Aligned_cols=242 Identities=18% Similarity=0.282 Sum_probs=177.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCccc-ccCC-CeEEEEEeCCccc--HHHHHHHHHHHhccc----cCCccCHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETV-KNHF-DLRIWMCISDIFY--HKAMLEKIIAFVAYR----EFSKHDLNKLQE 75 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~----~~~~~~~~~~~~ 75 (459)
..++|+|+||||+||||||.+++++.++ +.+| ++++|++++.... ....+..++..++.. .....+.+....
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 225 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHH
Confidence 4789999999999999999999997655 7889 4899999876522 122233344455421 123456667777
Q ss_pred HHHhhcCC--ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHH
Q 040680 76 VHHQKIDR--KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFI 140 (459)
Q Consensus 76 ~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~ 140 (459)
.+...+.+ +++|||+||+|+. . .+ ...++|++||||||+..+.. +|+.+||++||.
T Consensus 226 ~l~~~l~~~~~~~LLVLDdv~~~--~---~l----~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~ 296 (591)
T 1z6t_A 226 RLRILMLRKHPRSLLILDDVWDS--W---VL----KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILS 296 (591)
T ss_dssp HHHHHHHHTCTTCEEEEEEECCH--H---HH----HTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHccCCCCeEEEEeCCCCH--H---HH----HHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHH
Confidence 77777765 7899999999763 2 22 23467999999999987543 599999999999
Q ss_pred HHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhcccchhhhHhHhhhhhhhhh--------hcCCchhhHHH
Q 040680 141 LMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYCNKIEAYWLPFRQEELSKIK--------QEGNHILPILE 212 (459)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~--------~~~~~i~~~l~ 212 (459)
..++... ....+.+.+|+++|+|+|||++++|+.++... ..|..+.+....... .....+..++.
T Consensus 297 ~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 369 (591)
T 1z6t_A 297 LFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS 369 (591)
T ss_dssp HHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHH
T ss_pred HHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHH
Confidence 9986421 22345789999999999999999999998764 468766654332211 11136889999
Q ss_pred HhhccCchhHHHHHhhhhcccc---cc-----------------------------cCCCCCEEEEEechhHHHHhhhhh
Q 040680 213 LSYNHIPSHLHQCFSYCVLFQD---VI-----------------------------YDGDGNIVKCKIHDLVHDLAGSVS 260 (459)
Q Consensus 213 ~s~~~L~~~~k~~f~~l~~~~~---~~-----------------------------~~~~~~~~~~~~hdLv~~~~~~~~ 260 (459)
.||+.|++..+.||.++++|.. +. ....+...+|.||++++++++...
T Consensus 370 ~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 370 ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999999999999999999643 00 011234457999999999999874
Q ss_pred c
Q 040680 261 R 261 (459)
Q Consensus 261 ~ 261 (459)
.
T Consensus 450 ~ 450 (591)
T 1z6t_A 450 C 450 (591)
T ss_dssp G
T ss_pred h
Confidence 3
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=2e-18 Score=164.33 Aligned_cols=173 Identities=23% Similarity=0.301 Sum_probs=133.7
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCcccccccccccc---------CC---CCCc---ch
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEG---------CG---HTDV---DV 329 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~---------~~---~~~~---~~ 329 (459)
+..+|..++++++|++|++++|.+..+|..++++++|++|++++|+.+..+|..+.. +. .... ..
T Consensus 116 l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence 345788888899999999999998888988999999999999988888888876532 21 1111 11
Q ss_pred HHHhhccCCCCCcceEeeeeecccccCCC-CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc
Q 040680 330 EALLDDLKPHKNLRELSIFYFGVRCQYIP-QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW 408 (459)
Q Consensus 330 ~~~~~~l~~l~~L~~L~l~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 408 (459)
..+|..++.+++|++|++++| ....+| .++.+++|++|++++|.....+|..+ + .+++|++|+|++|+....+
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N--~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~---~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNS--PLSALGPAIHHLPKLEELDLRGCTALRNYPPIF-G---GRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESS--CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT-T---CCCCCCEEECTTCTTCCBC
T ss_pred CcchHhhcCCCCCCEEEccCC--CCCcCchhhccCCCCCEEECcCCcchhhhHHHh-c---CCCCCCEEECCCCCchhhc
Confidence 356677888888888888888 333444 48888889999998887666666543 2 7889999999998888888
Q ss_pred ccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 409 LRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
|..+. .+++|++|+|++|+.++.+|. +++|+ .+.+
T Consensus 270 p~~~~--------------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~-~l~l 308 (328)
T 4fcg_A 270 PLDIH--------------RLTQLEKLDLRGCVNLSRLPSLIAQLPANC-IILV 308 (328)
T ss_dssp CTTGG--------------GCTTCCEEECTTCTTCCCCCGGGGGSCTTC-EEEC
T ss_pred chhhh--------------cCCCCCEEeCCCCCchhhccHHHhhccCce-EEeC
Confidence 87766 799999999999999999998 67777 6654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=2e-17 Score=157.35 Aligned_cols=172 Identities=22% Similarity=0.375 Sum_probs=136.9
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCC---cc----hHHHhhcc-
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTD---VD----VEALLDDL- 336 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~~----~~~~~~~l- 336 (459)
+..+|..++++++|++|++++|.+..+|..++++++|++|++++|. +..+|..+..+.-.. .. ...+|..+
T Consensus 93 l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 4568888999999999999999999999999999999999999976 679998876654211 11 13344443
Q ss_pred --------CCCCCcceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCc
Q 040680 337 --------KPHKNLRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKG 407 (459)
Q Consensus 337 --------~~l~~L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 407 (459)
+.+++|++|++++| ....+|. ++.+++|++|++++| .+..++... . .+++|+.|+|++|+....
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n--~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l-~---~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWT--GIRSLPASIANLQNLKSLKIRNS-PLSALGPAI-H---HLPKLEELDLRGCTALRN 244 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEE--CCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGG-G---GCTTCCEEECTTCTTCCB
T ss_pred hccchhhhccCCCCCEEECcCC--CcCcchHhhcCCCCCCEEEccCC-CCCcCchhh-c---cCCCCCEEECcCCcchhh
Confidence 34889999999998 3345664 888999999999986 455666543 3 788999999999888888
Q ss_pred cccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceeeC
Q 040680 408 WLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRIP 459 (459)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i~ 459 (459)
+|..+. .+++|++|++++|..++.+|. +++|+ .|.+.
T Consensus 245 ~p~~~~--------------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~-~L~L~ 285 (328)
T 4fcg_A 245 YPPIFG--------------GRAPLKRLILKDCSNLLTLPLDIHRLTQLE-KLDLR 285 (328)
T ss_dssp CCCCTT--------------CCCCCCEEECTTCTTCCBCCTTGGGCTTCC-EEECT
T ss_pred hHHHhc--------------CCCCCCEEECCCCCchhhcchhhhcCCCCC-EEeCC
Confidence 887766 799999999999999999997 88888 88763
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=4.5e-14 Score=130.41 Aligned_cols=150 Identities=23% Similarity=0.276 Sum_probs=107.5
Q ss_pred cccCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
..|.++++|++|++++|.+..+|.. +.++++|++|++++|. +..+|.. .++.+++|++|+++
T Consensus 55 ~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------------~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIG----------------VFDQLVNLAELRLD 117 (270)
T ss_dssp TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTT----------------TTTTCSSCCEEECC
T ss_pred HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHh----------------HcccccCCCEEECC
Confidence 4678888888888888888888765 4778888888888865 6666643 45667888888888
Q ss_pred eecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCC
Q 040680 349 YFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEP 426 (459)
Q Consensus 349 ~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (459)
+| ....++. |+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ .+..++.....
T Consensus 118 ~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~------------ 178 (270)
T 2o6q_A 118 RN--QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFD---KLTSLKELRLYNN-QLKRVPEGAFD------------ 178 (270)
T ss_dssp SS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTT------------
T ss_pred CC--ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHcc---CCcccceeEecCC-cCcEeChhHhc------------
Confidence 88 3333333 788888888888875 56666654443 6788888888875 56666543211
Q ss_pred CCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 427 PSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 427 ~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.|++++| .++.+|. +++|+ .|.+
T Consensus 179 -~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~-~L~l 212 (270)
T 2o6q_A 179 -KLTELKTLKLDNN-QLKRVPEGAFDSLEKLK-MLQL 212 (270)
T ss_dssp -TCTTCCEEECCSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred -cCCCcCEEECCCC-cCCcCCHHHhccccCCC-EEEe
Confidence 6788888888888 6777775 56677 6665
No 8
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.1e-14 Score=131.90 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=93.6
Q ss_pred ccCCCccceEeecCCCC-ccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 271 SISKLKHLWYLNLPGNG-ITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
.|.++++|++|++++|. ++.+|. .|.++++|++|++++|+.+..+|.. .+..+++|++|+++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----------------~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD----------------ALKELPLLKFLGIF 113 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT----------------SEECCTTCCEEEEE
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH----------------HhCCCCCCCEEeCC
Confidence 57778888888888886 777765 6777888888888774446666632 33444566666666
Q ss_pred eecccccCCCCCCCCCCCc---EEecCCCcCcceeccccCcCCCCCCCcC-EEeecCCCCCCccccccccC-------CC
Q 040680 349 YFGVRCQYIPQLEQLPSLK---SLTLSWLDALVYICFSSIASRTRFSSLE-YISILGCPELKGWLRRIDND-------AD 417 (459)
Q Consensus 349 ~~~~~~~~l~~l~~l~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~-------~~ 417 (459)
+| ....+|.++.+++|+ +|+++++..++.++...+. .+++|+ .|+++++ .+..+|...... ..
T Consensus 114 ~n--~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~---~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 114 NT--GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ---GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EE--CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTT---TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECT
T ss_pred CC--CCccccccccccccccccEEECCCCcchhhcCccccc---chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcC
Confidence 55 233344455555555 5555554344444443332 444555 5555542 333433321100 00
Q ss_pred CC-CcCCCCCC---CC-CccceeeecCCCCCCCCCC--CCCCccceee
Q 040680 418 GS-KIDMIEPP---SF-PCLSELDISGCPKLILIPL--YPYLETDWRI 458 (459)
Q Consensus 418 ~~-~~~~~~~~---~l-~~L~~L~l~~c~~l~~lP~--l~~L~~~L~i 458 (459)
+. .+..++.. .+ ++|+.|++++| .++.+|. +++|+ .|.+
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~-~L~l 233 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLK-ELIA 233 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCS-EEEC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCc-eeec
Confidence 11 12222211 46 78888888887 6778887 78888 7765
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.8e-14 Score=126.50 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=114.4
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
...+.+|++|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~------------------~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN------------------PISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG------------------GGTTCTTCCEEEEECTT
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch------------------hhhcCCCCCEEEeECCc
Confidence 366788999999999999888 7999999999999997 355554 45677999999999984
Q ss_pred ccccCCCCCCCCCCCcEEecCCCcCcce-eccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCC
Q 040680 352 VRCQYIPQLEQLPSLKSLTLSWLDALVY-ICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFP 430 (459)
Q Consensus 352 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (459)
.....++.++.+++|++|++++|. +.. .+.. +. .+++|+.|++++|..+..++ ... .++
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~-l~---~l~~L~~L~L~~n~~i~~~~-~l~--------------~l~ 159 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSA-HDDSILTK-IN---TLPKVNSIDLSYNGAITDIM-PLK--------------TLP 159 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHH-HT---TCSSCCEEECCSCTBCCCCG-GGG--------------GCS
T ss_pred cCcccChhhcCCCCCCEEEecCCc-cCcHhHHH-Hh---hCCCCCEEEccCCCCccccH-hhc--------------CCC
Confidence 433346678999999999999864 443 3322 23 78899999999986688776 344 789
Q ss_pred ccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 431 CLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 431 ~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
+|+.|++++| .+..+|. +++|+ .|.+
T Consensus 160 ~L~~L~l~~n-~i~~~~~l~~l~~L~-~L~l 188 (197)
T 4ezg_A 160 ELKSLNIQFD-GVHDYRGIEDFPKLN-QLYA 188 (197)
T ss_dssp SCCEEECTTB-CCCCCTTGGGCSSCC-EEEE
T ss_pred CCCEEECCCC-CCcChHHhccCCCCC-EEEe
Confidence 9999999999 5777776 88888 8876
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=7.2e-14 Score=130.34 Aligned_cols=149 Identities=23% Similarity=0.176 Sum_probs=110.0
Q ss_pred ccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
+..+.++++|++|++++|.++.+|.. +.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~-----------------~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPL-----------------LGQTLPALTVLDVS 108 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCC-----------------CTTTCTTCCEEECC
T ss_pred HHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCch-----------------hhccCCCCCEEECC
Confidence 45677788888888888888777664 677888888888754 666664 34566889999998
Q ss_pred eecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCC
Q 040680 349 YFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEP 426 (459)
Q Consensus 349 ~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (459)
+| ....+| .|+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ ++..+|.....
T Consensus 109 ~N--~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~------------ 169 (290)
T 1p9a_G 109 FN--RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLT---PTPKLEKLSLANN-NLTELPAGLLN------------ 169 (290)
T ss_dssp SS--CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTT---TCTTCCEEECTTS-CCSCCCTTTTT------------
T ss_pred CC--cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcc---cccCCCEEECCCC-cCCccCHHHhc------------
Confidence 88 444444 3888899999999885 56667665544 6788999999884 67777765421
Q ss_pred CCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 427 PSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 427 ~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.+++|+.|++++| .++.+|. .++|+ .|.+
T Consensus 170 -~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~-~l~L 202 (290)
T 1p9a_G 170 -GLENLDTLLLQEN-SLYTIPKGFFGSHLLP-FAFL 202 (290)
T ss_dssp -TCTTCCEEECCSS-CCCCCCTTTTTTCCCS-EEEC
T ss_pred -CcCCCCEEECCCC-cCCccChhhcccccCC-eEEe
Confidence 6889999999998 6888887 55676 6654
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=8.4e-14 Score=128.71 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=45.8
Q ss_pred cCCCCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccc
Q 040680 336 LKPHKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRID 413 (459)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 413 (459)
++.+++|++|++++| ....++. ++.+++|++|++++| .++.++...+. .+++|+.|++++| .+..++....
T Consensus 129 ~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~ 201 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHN--QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFD---KLTQLKDLRLYQN-QLKSVPDGVF 201 (272)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCSCCCTTTT
T ss_pred hccCCCCCEEECCCC--ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhc---CCccCCEEECCCC-cCCccCHHHH
Confidence 444556666666655 2223332 455566666666654 34444433222 4556666666653 3444443211
Q ss_pred cCCCCCCcCCCCCCCCCccceeeecCCCCCCCCC
Q 040680 414 NDADGSKIDMIEPPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP 447 (459)
. .+++|+.|++++|+.....|
T Consensus 202 ~-------------~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 202 D-------------RLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp T-------------TCTTCCEEECCSSCBCCCTT
T ss_pred h-------------CCcCCCEEEccCCCccccCc
Confidence 1 45666666666665444444
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.3e-13 Score=125.75 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=73.3
Q ss_pred ccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
..+|..+. .++++|++++|.+..++. .+.++++|++|++++|. +..++.. .+..+++|++
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------------~~~~l~~L~~ 87 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAG----------------VFDDLTELGT 87 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT----------------TTTTCTTCCE
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHh----------------HhccCCcCCE
Confidence 34444433 356666666666665543 46666666666666644 4444322 3444566666
Q ss_pred EeeeeecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCCCCCc
Q 040680 345 LSIFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDADGSKI 421 (459)
Q Consensus 345 L~l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~ 421 (459)
|++++| ....++ .|+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ ++..++.. +.
T Consensus 88 L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~-------- 152 (251)
T 3m19_A 88 LGLANN--QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFD---RLTKLKELRLNTN-QLQSIPAGAFD-------- 152 (251)
T ss_dssp EECTTS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTT--------
T ss_pred EECCCC--cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhc---cCCcccEEECcCC-cCCccCHHHcC--------
Confidence 666655 222222 2555666666666653 44444443332 4556666666653 45554442 22
Q ss_pred CCCCCCCCCccceeeecCCCCCCCCC
Q 040680 422 DMIEPPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~~l~~lP 447 (459)
.+++|+.|++++| .+..+|
T Consensus 153 ------~l~~L~~L~L~~N-~l~~~~ 171 (251)
T 3m19_A 153 ------KLTNLQTLSLSTN-QLQSVP 171 (251)
T ss_dssp ------TCTTCCEEECCSS-CCSCCC
T ss_pred ------cCcCCCEEECCCC-cCCccC
Confidence 4556666666665 344444
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.6e-13 Score=126.69 Aligned_cols=153 Identities=25% Similarity=0.314 Sum_probs=120.7
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .++++|++++|.+..+|. .|.++++|++|++++|. +..+|.. .++.+++|+
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~----------------~~~~l~~L~ 88 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAG----------------IFKELKNLE 88 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTT----------------TTSSCTTCC
T ss_pred CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChh----------------hhcCCCCCC
Confidence 445666554 579999999999998876 79999999999999965 7777754 456779999
Q ss_pred eEeeeeecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCc
Q 040680 344 ELSIFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKI 421 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 421 (459)
+|++++| ....+| .|..+++|++|+++++ .++.++...+. .+++|++|+|+++ .+..++.....
T Consensus 89 ~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~~~------- 154 (270)
T 2o6q_A 89 TLWVTDN--KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFD---SLTKLTYLSLGYN-ELQSLPKGVFD------- 154 (270)
T ss_dssp EEECCSS--CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTT-------
T ss_pred EEECCCC--cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhC---cCcCCCEEECCCC-cCCccCHhHcc-------
Confidence 9999999 344444 3789999999999985 56667665544 7899999999995 67777755221
Q ss_pred CCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 422 DMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|++|++++| .+..+|. +++|+ .|.+
T Consensus 155 ------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L 188 (270)
T 2o6q_A 155 ------KLTSLKELRLYNN-QLKRVPEGAFDKLTELK-TLKL 188 (270)
T ss_dssp ------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred ------CCcccceeEecCC-cCcEeChhHhccCCCcC-EEEC
Confidence 7899999999999 6777775 67788 7765
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=136.64 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=109.1
Q ss_pred cccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccc-cccCC---CCCc---ch-HHH-hhccCCC
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRI-LEGCG---HTDV---DV-EAL-LDDLKPH 339 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~---~~~~---~~-~~~-~~~l~~l 339 (459)
..|.++.+|++|++++|.++.+|. .|..+++|++|++++|. +..+|.. +..+. .... .. ..+ +..++.+
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 445666666666666666666654 46666666666666644 4444431 21111 0000 00 111 1256778
Q ss_pred CCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCC
Q 040680 340 KNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGS 419 (459)
Q Consensus 340 ~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 419 (459)
++|++|++++| ....+|.+..+++|++|+++++ .++.++...+. .+++|+.|+|+++ ++..++.....
T Consensus 185 ~~L~~L~L~~n--~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~----- 252 (440)
T 3zyj_A 185 SNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQ---GLMHLQKLWMIQS-QIQVIERNAFD----- 252 (440)
T ss_dssp SSCCEEECTTS--CCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTT---TCTTCCEEECTTC-CCCEECTTSST-----
T ss_pred cccCeecCCCC--cCccccccCCCcccCEEECCCC-ccCccChhhhc---cCccCCEEECCCC-ceeEEChhhhc-----
Confidence 89999999988 5667788889999999999986 56666554444 7889999999985 56666543221
Q ss_pred CcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 420 KIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.|+|++| ++..+|. +++|+ .|.+
T Consensus 253 --------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L 286 (440)
T 3zyj_A 253 --------NLQSLVEINLAHN-NLTLLPHDLFTPLHHLE-RIHL 286 (440)
T ss_dssp --------TCTTCCEEECTTS-CCCCCCTTTTSSCTTCC-EEEC
T ss_pred --------CCCCCCEEECCCC-CCCccChhHhccccCCC-EEEc
Confidence 7899999999999 6888886 67787 7765
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=1.8e-13 Score=127.29 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=93.9
Q ss_pred cccCCCccceEeecCCCC-cccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEee
Q 040680 270 SSISKLKHLWYLNLPGNG-ITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSI 347 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 347 (459)
..+.++++|++|++++|. +..+ |..+..+++|++|++++|. +..++ +..++.+++|++|++
T Consensus 74 ~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------------~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELG----------------PGLFRGLAALQYLYL 136 (285)
T ss_dssp TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCC----------------TTTTTTCTTCCEEEC
T ss_pred hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEEC----------------HhHhhCCcCCCEEEC
Confidence 334444444555554443 4444 3344444445555544433 22222 335677788888888
Q ss_pred eeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-ccccccCCCCCCcCCC
Q 040680 348 FYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRIDNDADGSKIDMI 424 (459)
Q Consensus 348 ~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~~~~~ 424 (459)
++| ....++. ++.+++|++|+++++ .++.++...+. .+++|+.|+++++ .+..+ +..+.
T Consensus 137 ~~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~----------- 198 (285)
T 1ozn_A 137 QDN--ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFR---GLHSLDRLLLHQN-RVAHVHPHAFR----------- 198 (285)
T ss_dssp CSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTTTT-----------
T ss_pred CCC--cccccCHhHhccCCCccEEECCCC-cccccCHHHhc---CccccCEEECCCC-cccccCHhHcc-----------
Confidence 888 3334442 788888888888875 56666655444 6788888888885 45555 44443
Q ss_pred CCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 425 EPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 199 ---~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l 232 (285)
T 1ozn_A 199 ---DLGRLMTLYLFAN-NLSALPTEALAPLRALQ-YLRL 232 (285)
T ss_dssp ---TCTTCCEEECCSS-CCSCCCHHHHTTCTTCC-EEEC
T ss_pred ---CcccccEeeCCCC-cCCcCCHHHcccCcccC-EEec
Confidence 6889999999998 6777774 77788 7765
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=137.21 Aligned_cols=166 Identities=25% Similarity=0.354 Sum_probs=99.4
Q ss_pred CccccCCCccceEeecCCCCccccC-cccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEe
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLP-NSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELS 346 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (459)
.+..|.++++|++|++++|.+..++ ..|.++++|++|++++|. +..+|.. .+..+++|++|+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------------~~~~l~~L~~L~ 142 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNG----------------AFVYLSKLKELW 142 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTT----------------TSCSCSSCCEEE
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHh----------------HhhccccCceee
Confidence 3467888999999999999988776 578889999999999865 7777753 345556777777
Q ss_pred eeeecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc------CCCC
Q 040680 347 IFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN------DADG 418 (459)
Q Consensus 347 l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~------~~~~ 418 (459)
+++| ....++ .|..+++|++|++++++.+..++...+. .+++|+.|+|++| ++..+|..... ..++
T Consensus 143 L~~N--~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 143 LRNN--PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp CCSC--CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT---TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTT
T ss_pred CCCC--cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh---cccccCeecCCCC-cCccccccCCCcccCEEECCC
Confidence 7766 222333 2666666777776666666666554433 4556666666653 34444421100 0001
Q ss_pred CCcCCCCC---CCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 419 SKIDMIEP---PSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~---~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
..+..+++ ..+++|+.|++++| .+..++. +++|+ .|.+
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L 262 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLV-EINL 262 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCC-EEEC
T ss_pred CccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCC-EEEC
Confidence 11111111 15667777777776 4544443 55666 6654
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=9.9e-14 Score=137.98 Aligned_cols=166 Identities=23% Similarity=0.321 Sum_probs=87.8
Q ss_pred CccccCCCccceEeecCCCCccccC-cccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEe
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLP-NSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELS 346 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (459)
.|..|.++++|++|++++|.+..++ ..|.++++|++|++++|. +..+|.. .++.+++|++|+
T Consensus 91 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------------~~~~l~~L~~L~ 153 (452)
T 3zyi_A 91 QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSG----------------AFEYLSKLRELW 153 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTT----------------TSSSCTTCCEEE
T ss_pred CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChh----------------hhcccCCCCEEE
Confidence 3456777777777777777777664 467777777777777754 5566543 344456666666
Q ss_pred eeeecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc------CCCC
Q 040680 347 IFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN------DADG 418 (459)
Q Consensus 347 l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~------~~~~ 418 (459)
+++| ....++ .|.++++|++|++++|+.++.++...+. .+++|+.|+|++| ++..+|..... ..++
T Consensus 154 L~~N--~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 154 LRNN--PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCSC--CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT---TCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTT
T ss_pred CCCC--CcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc---CCCCCCEEECCCC-cccccccccccccccEEECcC
Confidence 6665 222222 2555566666666655555555543332 4445555555543 33333211000 0000
Q ss_pred CCcCCCCC---CCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 419 SKIDMIEP---PSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~---~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
..+..+++ ..+++|+.|++++| .+..++. +++|+ .|.+
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L 273 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLV-ELNL 273 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC-EEEC
T ss_pred CcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCC-EEEC
Confidence 01111100 15677777777777 4444432 56666 6654
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=1.3e-13 Score=137.09 Aligned_cols=166 Identities=21% Similarity=0.243 Sum_probs=108.4
Q ss_pred ccccCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCccccccccc-cccCCC---CCc---ch-HHH-hhccCC
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCRSLAELPRI-LEGCGH---TDV---DV-EAL-LDDLKP 338 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~---~~~---~~-~~~-~~~l~~ 338 (459)
|..|.++.+|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+.- ... .. ..+ ...+..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 34556666666666666666655543 5556666666666644 4444432 211110 000 00 111 125677
Q ss_pred CCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCC
Q 040680 339 HKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDAD 417 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~ 417 (459)
+++|++|++++| ....+|.+..+++|++|+++++ .+..++...+. .+++|+.|+|+++ .+..++.. +.
T Consensus 195 l~~L~~L~L~~n--~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~---- 263 (452)
T 3zyi_A 195 LFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSFH---GLSSLKKLWVMNS-QVSLIERNAFD---- 263 (452)
T ss_dssp CTTCCEEECTTS--CCSSCCCCTTCTTCCEEECTTS-CCSEECGGGGT---TCTTCCEEECTTS-CCCEECTTTTT----
T ss_pred CCCCCEEECCCC--cccccccccccccccEEECcCC-cCcccCccccc---CccCCCEEEeCCC-cCceECHHHhc----
Confidence 889999999988 5566788889999999999986 46666544444 7889999999985 56665433 33
Q ss_pred CCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 418 GSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.|+|++| ++..+|. +++|+ .|.+
T Consensus 264 ----------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L 297 (452)
T 3zyi_A 264 ----------GLASLVELNLAHN-NLSSLPHDLFTPLRYLV-ELHL 297 (452)
T ss_dssp ----------TCTTCCEEECCSS-CCSCCCTTSSTTCTTCC-EEEC
T ss_pred ----------CCCCCCEEECCCC-cCCccChHHhccccCCC-EEEc
Confidence 7899999999999 7888886 67787 7765
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.50 E-value=2e-13 Score=127.06 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=113.4
Q ss_pred cccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 270 SSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
..+..+++|++|++++|.+..+ |..+.++++|++|++++|..+..++. ..+..+++|++|+++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~----------------~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----------------ATFHGLGRLHTLHLD 113 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT----------------TTTTTCTTCCEEECT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH----------------HHhcCCcCCCEEECC
Confidence 4577888888888888888776 66788888888888888755666642 356777999999999
Q ss_pred eecccccCC-C-CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCCCCCcCCCC
Q 040680 349 YFGVRCQYI-P-QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDADGSKIDMIE 425 (459)
Q Consensus 349 ~~~~~~~~l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~~~~~ 425 (459)
+|. ...+ | .++.+++|++|+++++ .++.++...+. .+++|+.|+|+++ ++..++.. +.
T Consensus 114 ~n~--l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~------------ 174 (285)
T 1ozn_A 114 RCG--LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR---DLGNLTHLFLHGN-RISSVPERAFR------------ 174 (285)
T ss_dssp TSC--CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCEECTTTTT------------
T ss_pred CCc--CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhc---cCCCccEEECCCC-cccccCHHHhc------------
Confidence 983 3333 3 3889999999999985 56666655444 7889999999985 67777754 33
Q ss_pred CCCCCccceeeecCCCCCCCC-CC----CCCCccceee
Q 040680 426 PPSFPCLSELDISGCPKLILI-PL----YPYLETDWRI 458 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~l-P~----l~~L~~~L~i 458 (459)
.+++|+.|++++|. +..+ |. +++|+ .|.+
T Consensus 175 --~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~-~L~l 208 (285)
T 1ozn_A 175 --GLHSLDRLLLHQNR-VAHVHPHAFRDLGRLM-TLYL 208 (285)
T ss_dssp --TCTTCCEEECCSSC-CCEECTTTTTTCTTCC-EEEC
T ss_pred --CccccCEEECCCCc-ccccCHhHccCccccc-EeeC
Confidence 78999999999995 5544 54 67888 8775
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.49 E-value=3.9e-14 Score=133.78 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=97.7
Q ss_pred cCccccCCCccceEeecCCCCcc-ccCcccccccCCCeeccCCCccccccccccccCC-C---CCcch----HHHhhccC
Q 040680 267 IVPSSISKLKHLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG-H---TDVDV----EALLDDLK 337 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~-~---~~~~~----~~~~~~l~ 337 (459)
.+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+..+. - ..... ..+|..++
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 45666666666666666666666 5566666666666666666553335665554332 0 00000 23444555
Q ss_pred CCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCC
Q 040680 338 PHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDAD 417 (459)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 417 (459)
.+. |++|++++|.........++.+++|+.|+++++. +...+.. + ..+++|++|+|++|.--..+|..+.
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~---~~l~~L~~L~Ls~N~l~~~~p~~l~---- 265 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK-V---GLSKNLNGLDLRNNRIYGTLPQGLT---- 265 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG-C---CCCTTCCEEECCSSCCEECCCGGGG----
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc-c---cccCCCCEEECcCCcccCcCChHHh----
Confidence 554 6666666662221122236677777777777653 3322222 1 2567788888877543235665555
Q ss_pred CCCcCCCCCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 418 GSKIDMIEPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|+.|++++|+..+.+|. +++|+ .|.+
T Consensus 266 ----------~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~-~l~l 298 (313)
T 1ogq_A 266 ----------QLKFLHSLNVSFNNLCGEIPQGGNLQRFD-VSAY 298 (313)
T ss_dssp ----------GCTTCCEEECCSSEEEEECCCSTTGGGSC-GGGT
T ss_pred ----------cCcCCCEEECcCCcccccCCCCccccccC-hHHh
Confidence 678888888888865557777 55555 5543
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.7e-13 Score=128.95 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=98.0
Q ss_pred ccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---CCCcc---hHHHhhccCCCCCcce
Q 040680 271 SISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---HTDVD---VEALLDDLKPHKNLRE 344 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---~~~~~---~~~~~~~l~~l~~L~~ 344 (459)
.+..+++|++|++++|.+..++. +..+++|++|++++|. +..+|. +..+. ..... ...++ .++.+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA-IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG-GTTCTTCCEEECTTSCCCCCG-GGTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh-hcCCCCCCEEECCCCCCCCch-hhcCCCCCCE
Confidence 35556666666666666666655 6666666666666644 444442 21111 00000 01111 3667788888
Q ss_pred EeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCC
Q 040680 345 LSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMI 424 (459)
Q Consensus 345 L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (459)
|++++| ....++.++.+++|++|++++| .+..++. + ..+++|+.|++++| .+..++. ..
T Consensus 134 L~l~~n--~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~----------- 192 (308)
T 1h6u_A 134 LYLDLN--QITNISPLAGLTNLQYLSIGNA-QVSDLTP--L---ANLSKLTTLKADDN-KISDISP-LA----------- 192 (308)
T ss_dssp EECCSS--CCCCCGGGGGCTTCCEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCCCGG-GG-----------
T ss_pred EECCCC--ccCcCccccCCCCccEEEccCC-cCCCChh--h---cCCCCCCEEECCCC-ccCcChh-hc-----------
Confidence 888877 4445555777888888888875 4554443 2 26788888888875 5666654 33
Q ss_pred CCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 425 EPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|++|++++| .+..+|. +++|+ .|.+
T Consensus 193 ---~l~~L~~L~L~~N-~l~~~~~l~~l~~L~-~L~l 224 (308)
T 1h6u_A 193 ---SLPNLIEVHLKNN-QISDVSPLANTSNLF-IVTL 224 (308)
T ss_dssp ---GCTTCCEEECTTS-CCCBCGGGTTCTTCC-EEEE
T ss_pred ---CCCCCCEEEccCC-ccCccccccCCCCCC-EEEc
Confidence 6889999999998 5777766 77777 7765
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=3.4e-14 Score=134.20 Aligned_cols=172 Identities=18% Similarity=0.183 Sum_probs=117.8
Q ss_pred ccCccccCCCccceEeecCCCCcc-ccCcccccccCCCeeccCCCccccccccccccCCCCC---c---ch-HHHhhccC
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTD---V---DV-EALLDDLK 337 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~---~~-~~~~~~l~ 337 (459)
..+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+..+.-.. . .. ..+|..++
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 357778888888888888888887 7788888888888888888764447777765543211 1 11 25677777
Q ss_pred CCC-CcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCC
Q 040680 338 PHK-NLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDA 416 (459)
Q Consensus 338 ~l~-~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 416 (459)
.+. +|++|++++|.........++.++ |++|+++++ .+.......+. .+++|+.|+|+++ .+...+....
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~--- 241 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFG---SDKNTQKIHLAKN-SLAFDLGKVG--- 241 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCC---TTSCCSEEECCSS-EECCBGGGCC---
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHh---cCCCCCEEECCCC-ceeeecCccc---
Confidence 777 888888888833323333467776 888888875 34433333333 6788888888885 3443333333
Q ss_pred CCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 417 DGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.+++|++|++++|...+.+|. +++|+ .|.+
T Consensus 242 -----------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L 275 (313)
T 1ogq_A 242 -----------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-SLNV 275 (313)
T ss_dssp -----------CCTTCCEEECCSSCCEECCCGGGGGCTTCC-EEEC
T ss_pred -----------ccCCCCEEECcCCcccCcCChHHhcCcCCC-EEEC
Confidence 678888888888855447776 67777 7765
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=5.1e-13 Score=124.52 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=118.3
Q ss_pred cccCccccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .++++|++++|.+..+ |..+.++++|++|++++|. +..+|. .+.+++|+
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------------~~~l~~L~ 80 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV------------------DGTLPVLG 80 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC------------------CSCCTTCC
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC------------------CCCCCcCC
Confidence 445666554 5788999999998876 4578889999999999865 666663 25679999
Q ss_pred eEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcC
Q 040680 344 ELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKID 422 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 422 (459)
+|++++| ....+|. +..+++|++|+++++ .++.++...+. .+++|+.|+|+++ ++..++.....
T Consensus 81 ~L~Ls~N--~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~-------- 145 (290)
T 1p9a_G 81 TLDLSHN--QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALR---GLGELQELYLKGN-ELKTLPPGLLT-------- 145 (290)
T ss_dssp EEECCSS--CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTT---TCTTCCEEECTTS-CCCCCCTTTTT--------
T ss_pred EEECCCC--cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHc---CCCCCCEEECCCC-CCCccChhhcc--------
Confidence 9999999 4456665 889999999999985 67777765554 7899999999995 67777765321
Q ss_pred CCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 423 MIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.|++++| .++.+|. +++|+ .|.+
T Consensus 146 -----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~-~L~L 179 (290)
T 1p9a_G 146 -----PTPKLEKLSLANN-NLTELPAGLLNGLENLD-TLLL 179 (290)
T ss_dssp -----TCTTCCEEECTTS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred -----cccCCCEEECCCC-cCCccCHHHhcCcCCCC-EEEC
Confidence 6899999999999 6888886 67777 7765
No 24
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=2.2e-13 Score=127.19 Aligned_cols=140 Identities=24% Similarity=0.257 Sum_probs=80.1
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+..+++|++|++++|.+..++. +.++++|++|++++|. +..+| .++.+++|++|++++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~------------------~l~~l~~L~~L~L~~n- 122 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS------------------SLKDLKKLKSLSLEHN- 122 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG------------------GGTTCTTCCEEECTTS-
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh------------------hhccCCCCCEEECCCC-
Confidence 6667777777777777777766 7777777777777754 55554 2345566666666665
Q ss_pred ccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCc
Q 040680 352 VRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPC 431 (459)
Q Consensus 352 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (459)
....++.++.+++|+.|++++| .++.++ .+. .+++|+.|++++| .+..++. .. .+++
T Consensus 123 -~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~---~l~~L~~L~L~~N-~l~~~~~-l~--------------~l~~ 179 (291)
T 1h6t_A 123 -GISDINGLVHLPQLESLYLGNN-KITDIT--VLS---RLTKLDTLSLEDN-QISDIVP-LA--------------GLTK 179 (291)
T ss_dssp -CCCCCGGGGGCTTCCEEECCSS-CCCCCG--GGG---GCTTCSEEECCSS-CCCCCGG-GT--------------TCTT
T ss_pred -cCCCChhhcCCCCCCEEEccCC-cCCcch--hhc---cCCCCCEEEccCC-ccccchh-hc--------------CCCc
Confidence 3333445556666666666654 233331 111 4556666666654 3444433 22 4556
Q ss_pred cceeeecCCCCCCCCCC---CCCCcccee
Q 040680 432 LSELDISGCPKLILIPL---YPYLETDWR 457 (459)
Q Consensus 432 L~~L~l~~c~~l~~lP~---l~~L~~~L~ 457 (459)
|+.|++++| .+..+|. +++|+ .|.
T Consensus 180 L~~L~L~~N-~i~~l~~l~~l~~L~-~L~ 206 (291)
T 1h6t_A 180 LQNLYLSKN-HISDLRALAGLKNLD-VLE 206 (291)
T ss_dssp CCEEECCSS-CCCBCGGGTTCTTCS-EEE
T ss_pred cCEEECCCC-cCCCChhhccCCCCC-EEE
Confidence 666666665 4555544 44454 444
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=3.7e-13 Score=126.68 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=101.0
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---CCCcc---hHHHhhccCCCCCcceE
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---HTDVD---VEALLDDLKPHKNLREL 345 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---~~~~~---~~~~~~~l~~l~~L~~L 345 (459)
+..+++|++|++++|.+..+| .+.++++|++|++++|. +..+|. +..+. ..... ...++ .++.+++|++|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEE
T ss_pred HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEE
Confidence 666666777777776666654 46666667777766654 455543 32221 00000 01112 26778999999
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
++++| ....++.+..+++|+.|+++++ .+..++. +. .+++|+.|+|++| .+..++. ..
T Consensus 157 ~l~~n--~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~---~l~~L~~L~L~~N-~l~~~~~-l~------------ 214 (308)
T 1h6u_A 157 SIGNA--QVSDLTPLANLSKLTTLKADDN-KISDISP--LA---SLPNLIEVHLKNN-QISDVSP-LA------------ 214 (308)
T ss_dssp ECCSS--CCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GG---GCTTCCEEECTTS-CCCBCGG-GT------------
T ss_pred EccCC--cCCCChhhcCCCCCCEEECCCC-ccCcChh--hc---CCCCCCEEEccCC-ccCcccc-cc------------
Confidence 99999 4555666899999999999986 4665554 22 7899999999996 6777763 33
Q ss_pred CCCCCccceeeecCCCCCCCCCC
Q 040680 426 PPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.+++|+.|++++|+ +...|.
T Consensus 215 --~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 215 --NTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp --TCTTCCEEEEEEEE-EECCCE
T ss_pred --CCCCCCEEEccCCe-eecCCe
Confidence 79999999999994 666665
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.46 E-value=3.9e-14 Score=146.87 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=80.4
Q ss_pred CccccCCCccceEeecCCCCccc------------------cCcccc--cccCCCeeccCCCccccccccccccCCCCC-
Q 040680 268 VPSSISKLKHLWYLNLPGNGITK------------------LPNSVS--KLLNLETPDCNGCRSLAELPRILEGCGHTD- 326 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~- 326 (459)
+|..++++++|++|++++|.++. +|.+++ ++++|++|++++|.....+|..+..+.-..
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 67777777888888888777776 777777 788888888877776677777665443111
Q ss_pred -----cc-h-H-HHhhccCCC------CCcceEeeeeecccccCCCC---CCCCCCCcEEecCCCcCcceeccccCcCCC
Q 040680 327 -----VD-V-E-ALLDDLKPH------KNLRELSIFYFGVRCQYIPQ---LEQLPSLKSLTLSWLDALVYICFSSIASRT 389 (459)
Q Consensus 327 -----~~-~-~-~~~~~l~~l------~~L~~L~l~~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 389 (459)
.. . . .+|..++.+ ++|++|++++|. ...+|. ++.+++|++|+++++.-...+| .+.
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~--- 350 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG--- 350 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE---
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CCccCchhhhccCCCCCEEeCcCCcCccchh--hhC---
Confidence 11 1 2 566666554 777777777773 234554 6777777777777653222555 122
Q ss_pred CCCCcCEEeecCC
Q 040680 390 RFSSLEYISILGC 402 (459)
Q Consensus 390 ~l~~L~~L~L~~~ 402 (459)
.+++|+.|+|++|
T Consensus 351 ~l~~L~~L~L~~N 363 (636)
T 4eco_A 351 SEIKLASLNLAYN 363 (636)
T ss_dssp EEEEESEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4455555555553
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=9.6e-14 Score=133.41 Aligned_cols=46 Identities=30% Similarity=0.334 Sum_probs=28.4
Q ss_pred ccCCCccceEeecCCCCccccC-cccccccCCCeeccCCCcccccccc
Q 040680 271 SISKLKHLWYLNLPGNGITKLP-NSVSKLLNLETPDCNGCRSLAELPR 317 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~ 317 (459)
.+.++++|++|++++|.+..++ ..|+++++|++|++++|. +..+|.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 117 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSS 117 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCH
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCH
Confidence 4566666666666666666553 346666666666666644 455553
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=9.3e-14 Score=147.38 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=98.4
Q ss_pred CccccCCCccceEeecCCCCccc------------------cCcccc--cccCCCeeccCCCccccccccccccCCCCC-
Q 040680 268 VPSSISKLKHLWYLNLPGNGITK------------------LPNSVS--KLLNLETPDCNGCRSLAELPRILEGCGHTD- 326 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~- 326 (459)
+|..++++++|++|+|++|.++. +|.+++ ++++|++|++++|+....+|..+..+.-..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999887 898887 999999999999887888888776553111
Q ss_pred -----cc-h-H-HHhhccCC-------CCCcceEeeeeecccccCCCC---CCCCCCCcEEecCCCcCcceeccccCcCC
Q 040680 327 -----VD-V-E-ALLDDLKP-------HKNLRELSIFYFGVRCQYIPQ---LEQLPSLKSLTLSWLDALVYICFSSIASR 388 (459)
Q Consensus 327 -----~~-~-~-~~~~~l~~-------l~~L~~L~l~~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 388 (459)
.. . . .+|..++. +++|++|++++|. ...+|. ++++++|+.|+++++. +..+| .++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp--~~~-- 592 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVHNK-VRHLE--AFG-- 592 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC--CCC--
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCChhhhhcCCCCCEEECCCCC-cccch--hhc--
Confidence 11 1 2 45654444 4488888888883 335565 8888888888888753 55665 223
Q ss_pred CCCCCcCEEeecCCCCCCccccccc
Q 040680 389 TRFSSLEYISILGCPELKGWLRRID 413 (459)
Q Consensus 389 ~~l~~L~~L~L~~~~~l~~~~~~~~ 413 (459)
.+++|+.|+|++| .+..+|..+.
T Consensus 593 -~L~~L~~L~Ls~N-~l~~lp~~l~ 615 (876)
T 4ecn_A 593 -TNVKLTDLKLDYN-QIEEIPEDFC 615 (876)
T ss_dssp -TTSEESEEECCSS-CCSCCCTTSC
T ss_pred -CCCcceEEECcCC-ccccchHHHh
Confidence 6778888888875 3556665443
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=6.3e-13 Score=121.27 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=112.4
Q ss_pred CccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEe
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELS 346 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (459)
.+..+.++++|++|++++|.+..++. .+.++++|++|++++|. +..+|.. .++.+++|++|+
T Consensus 51 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------------~~~~l~~L~~L~ 113 (251)
T 3m19_A 51 SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLG----------------VFDHLTQLDKLY 113 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT----------------TTTTCTTCCEEE
T ss_pred CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChh----------------HhcccCCCCEEE
Confidence 44568999999999999999998765 58999999999999976 6777643 567789999999
Q ss_pred eeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCC
Q 040680 347 IFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMI 424 (459)
Q Consensus 347 l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (459)
+++| ....++. |+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ .+..++.....
T Consensus 114 L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~---------- 176 (251)
T 3m19_A 114 LGGN--QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFD---KLTNLQTLSLSTN-QLQSVPHGAFD---------- 176 (251)
T ss_dssp CCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTT----------
T ss_pred cCCC--cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcC---cCcCCCEEECCCC-cCCccCHHHHh----------
Confidence 9999 4445554 789999999999986 67777765444 7899999999995 67777653221
Q ss_pred CCCCCCccceeeecCCCCCC
Q 040680 425 EPPSFPCLSELDISGCPKLI 444 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~c~~l~ 444 (459)
.+++|+.|++++|+.-.
T Consensus 177 ---~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 177 ---RLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---TCTTCCEEECCSCCBCT
T ss_pred ---CCCCCCEEEeeCCceeC
Confidence 78999999999996433
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=8.4e-13 Score=117.81 Aligned_cols=138 Identities=17% Similarity=0.297 Sum_probs=106.8
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .+|++|++++|.+..+|. .|..+++|++|++++|. +..++ +..+..+++|+
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~----------------~~~~~~l~~L~ 83 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELA----------------PDAFQGLRSLN 83 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEEC----------------TTTTTTCSSCC
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcC----------------HHHhhCCcCCC
Confidence 455676554 679999999999998876 78899999999999976 55553 23567779999
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCc
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKI 421 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 421 (459)
+|++++| ....+|. |..+++|++|+++++ .+..++...+. .+++|+.|+|+++ .+..++.....
T Consensus 84 ~L~Ls~N--~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~------- 149 (220)
T 2v9t_B 84 SLVLYGN--KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQ---DLHNLNLLSLYDN-KLQTIAKGTFS------- 149 (220)
T ss_dssp EEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTT-------
T ss_pred EEECCCC--cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcC---CCCCCCEEECCCC-cCCEECHHHHh-------
Confidence 9999999 4455554 788999999999985 56666655444 7889999999984 67777654221
Q ss_pred CCCCCCCCCccceeeecCCC
Q 040680 422 DMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~ 441 (459)
.+++|+.|++++|+
T Consensus 150 ------~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 150 ------PLRAIQTMHLAQNP 163 (220)
T ss_dssp ------TCTTCCEEECCSSC
T ss_pred ------CCCCCCEEEeCCCC
Confidence 68899999999885
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=3.9e-13 Score=126.42 Aligned_cols=165 Identities=19% Similarity=0.181 Sum_probs=95.5
Q ss_pred CCCccceEeecCCCCccccCcccccccCCCeeccCCCcccccccc--ccccCC---CCCcch----HHHhhccCCCCCcc
Q 040680 273 SKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPR--ILEGCG---HTDVDV----EALLDDLKPHKNLR 343 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~--~~~~~~---~~~~~~----~~~~~~l~~l~~L~ 343 (459)
..+.+|++|++++|.+..+|..+..+++|++|++++|. +..+|. .+..+. ...... ...+..++.+++|+
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 34455555555555555555555555555555555533 333332 121111 000000 11234566778888
Q ss_pred eEeeeeecccccCCC-CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCCCCCc
Q 040680 344 ELSIFYFGVRCQYIP-QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDADGSKI 421 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~ 421 (459)
+|++++|......+| .++.+++|++|+++++ .++.++...+. .+++|+.|+|++| .+..++.. +.
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~-------- 220 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN---SLSSLQVLNMSHN-NFFSLDTFPYK-------- 220 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECTTS-CCSBCCSGGGT--------
T ss_pred EEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhc---CCCCCCEEECCCC-ccCccChhhcc--------
Confidence 888888733222234 4788888888888875 45555444433 6788888888885 46665542 22
Q ss_pred CCCCCCCCCccceeeecCCCCCCCCCC----CC-CCccceee
Q 040680 422 DMIEPPSFPCLSELDISGCPKLILIPL----YP-YLETDWRI 458 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~-~L~~~L~i 458 (459)
.+++|+.|++++|+.....|. ++ +|+ .|.+
T Consensus 221 ------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-~L~L 255 (306)
T 2z66_A 221 ------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNL 255 (306)
T ss_dssp ------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCC-EEEC
T ss_pred ------CcccCCEeECCCCCCcccCHHHHHhhhccCC-EEEc
Confidence 689999999999954444443 53 788 7775
No 32
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=4.6e-13 Score=137.14 Aligned_cols=81 Identities=31% Similarity=0.311 Sum_probs=47.7
Q ss_pred ccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 271 SISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
.+..+++|++|+|++|.+..+|+ +..+++|+.|+|++|. +..+| .+..+++|++|++++|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~------------------~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS------------------SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT------------------TSTTCTTCCEEECTTS
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh------------------hhccCCCCCEEEecCC
Confidence 46677777777777777777765 7777777777777754 55554 2334445555555444
Q ss_pred cccccCCCCCCCCCCCcEEecCC
Q 040680 351 GVRCQYIPQLEQLPSLKSLTLSW 373 (459)
Q Consensus 351 ~~~~~~l~~l~~l~~L~~L~l~~ 373 (459)
....++.+..+++|+.|+|++
T Consensus 120 --~l~~l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 120 --GISDINGLVHLPQLESLYLGN 140 (605)
T ss_dssp --CCCCCGGGGGCTTCSEEECCS
T ss_pred --CCCCCccccCCCccCEEECCC
Confidence 222333444445555555544
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.43 E-value=3.8e-13 Score=121.72 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=78.9
Q ss_pred ccCCCccceEeecCC-CCccccCc-ccccccCCCeeccCCCccccccccccccCCCCC------c----chHHHh-hccC
Q 040680 271 SISKLKHLWYLNLPG-NGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTD------V----DVEALL-DDLK 337 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~------~----~~~~~~-~~l~ 337 (459)
.|.++++|++|++++ |.++.+|. .|.++++|++|++++|. +..+|. +..+.-.. . ....++ ..++
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCccccc
Confidence 566777777777776 67776654 56677777777777754 555663 22221000 0 000111 1244
Q ss_pred CCCCcc-eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCC-CCcCEEeecCCCCCCccccccc
Q 040680 338 PHKNLR-ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRF-SSLEYISILGCPELKGWLRRID 413 (459)
Q Consensus 338 ~l~~L~-~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~~~~~~~ 413 (459)
.+++|+ +|++++|. ...+|. +.. ++|+.|+++++..++.++...+. .+ ++|+.|++++ +.+..+|.
T Consensus 153 ~l~~L~~~L~l~~n~--l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~---~l~~~L~~L~l~~-N~l~~l~~--- 222 (239)
T 2xwt_C 153 GLCNETLTLKLYNNG--FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQ-TSVTALPS--- 222 (239)
T ss_dssp TTBSSEEEEECCSCC--CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTT---TCSBCCSEEECTT-CCCCCCCC---
T ss_pred chhcceeEEEcCCCC--CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhh---ccccCCcEEECCC-CccccCCh---
Confidence 455555 56555552 222222 222 55666666554335555444333 34 5566666665 34444443
Q ss_pred cCCCCCCcCCCCCCCCCccceeeecCCCCC
Q 040680 414 NDADGSKIDMIEPPSFPCLSELDISGCPKL 443 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 443 (459)
..|++|+.|++++|..|
T Consensus 223 -------------~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 223 -------------KGLEHLKELIARNTWTL 239 (239)
T ss_dssp -------------TTCTTCSEEECTTC---
T ss_pred -------------hHhccCceeeccCccCC
Confidence 37999999999998754
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1.4e-12 Score=117.12 Aligned_cols=140 Identities=23% Similarity=0.234 Sum_probs=108.5
Q ss_pred cccCccccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .+|++|++++|.+..+ |..+.++++|++|++++|. +..+|.. .++.+++|+
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~----------------~~~~l~~L~ 91 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVG----------------VFDSLTQLT 91 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT----------------TTTTCTTCC
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChh----------------hcccCCCcC
Confidence 556676554 7899999999999877 5678899999999999966 6777743 467779999
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCc
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKI 421 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 421 (459)
+|++++| ....++. |..+++|++|+++++ .+..+|... . .+++|+.|+|+++ ++..++.....
T Consensus 92 ~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~-~---~l~~L~~L~L~~N-~l~~~~~~~~~------- 156 (229)
T 3e6j_A 92 VLDLGTN--QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGI-E---RLTHLTHLALDQN-QLKSIPHGAFD------- 156 (229)
T ss_dssp EEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTG-G---GCTTCSEEECCSS-CCCCCCTTTTT-------
T ss_pred EEECCCC--cCCccChhHhCcchhhCeEeccCC-cccccCccc-c---cCCCCCEEECCCC-cCCccCHHHHh-------
Confidence 9999998 4445554 788999999999985 577776544 2 7889999999984 68777754221
Q ss_pred CCCCCCCCCccceeeecCCCCCC
Q 040680 422 DMIEPPSFPCLSELDISGCPKLI 444 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~~l~ 444 (459)
.+++|+.|++++|+.-.
T Consensus 157 ------~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 157 ------RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ------TCTTCCEEECTTSCBCT
T ss_pred ------CCCCCCEEEeeCCCccC
Confidence 68999999999986443
No 35
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1e-12 Score=118.05 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=97.5
Q ss_pred ceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCC
Q 040680 278 LWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYI 357 (459)
Q Consensus 278 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l 357 (459)
-..++.+++.+..+|..+. ++|++|++++|. +..++. ..++.+++|++|++++| ....+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~----------------~~~~~l~~L~~L~L~~N--~l~~i 79 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-ITKLEP----------------GVFDSLINLKELYLGSN--QLGAL 79 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCT----------------TTTTTCTTCCEEECCSS--CCCCC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-cCccCH----------------HHhhCccCCcEEECCCC--CCCCc
Confidence 4567778888888887654 788888888865 555532 24566688888888888 33444
Q ss_pred CC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCcccee
Q 040680 358 PQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSEL 435 (459)
Q Consensus 358 ~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 435 (459)
|. |+.+++|+.|+++++ .++.++...+. .+++|+.|+|+++ ++..+|..+. .+++|+.|
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~---~l~~L~~L~Ls~N-~l~~lp~~~~--------------~l~~L~~L 140 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTN-QLTVLPSAVFD---RLVHLKELFMCCN-KLTELPRGIE--------------RLTHLTHL 140 (229)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCSCCTTGG--------------GCTTCSEE
T ss_pred ChhhcccCCCcCEEECCCC-cCCccChhHhC---cchhhCeEeccCC-cccccCcccc--------------cCCCCCEE
Confidence 43 678888888888875 56666655444 6778888888874 6777776665 67888888
Q ss_pred eecCCCCCCCCCC-----CCCCccceee
Q 040680 436 DISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 436 ~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
++++| .+..+|. +++|+ .|.+
T Consensus 141 ~L~~N-~l~~~~~~~~~~l~~L~-~L~l 166 (229)
T 3e6j_A 141 ALDQN-QLKSIPHGAFDRLSSLT-HAYL 166 (229)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCC-EEEC
T ss_pred ECCCC-cCCccCHHHHhCCCCCC-EEEe
Confidence 88888 6777774 56666 6654
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=1.6e-12 Score=119.99 Aligned_cols=148 Identities=22% Similarity=0.289 Sum_probs=111.9
Q ss_pred ccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 271 SISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
.+..+++|++|++++|.+..++ .++++++|++|++++|. +..+|.. .++.+++|++|++++|
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~----------------~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNG----------------VFDKLTNLKELVLVEN 119 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTT----------------TTTTCTTCCEEECTTS
T ss_pred ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChh----------------HhcCCcCCCEEECCCC
Confidence 4778889999999999888765 78889999999999875 6666633 4567789999999988
Q ss_pred cccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCC
Q 040680 351 GVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPS 428 (459)
Q Consensus 351 ~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (459)
....++. ++.+++|++|++++| .++.++...+. .+++|+.|++++| ++..++..... .
T Consensus 120 --~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~-------------~ 179 (272)
T 3rfs_A 120 --QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFD---KLTNLTELDLSYN-QLQSLPEGVFD-------------K 179 (272)
T ss_dssp --CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTT-------------T
T ss_pred --cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhc---cCccCCEEECCCC-CcCccCHHHhc-------------C
Confidence 3334443 788999999999986 56666654444 7889999999986 56666654321 6
Q ss_pred CCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 429 FPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 429 l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 180 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~-~L~l 212 (272)
T 3rfs_A 180 LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQ-YIWL 212 (272)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred CccCCEEECCCC-cCCccCHHHHhCCcCCC-EEEc
Confidence 889999999998 5666665 66777 7765
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.3e-12 Score=119.96 Aligned_cols=109 Identities=23% Similarity=0.223 Sum_probs=60.5
Q ss_pred ccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 271 SISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
.+..+.+|++|++++|.+..+| .+..+++|++|++++|. +..+|. ++.+++|++|++++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~------------------l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP------------------LKDLTKLEELSVNRN 95 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG------------------GTTCSSCCEEECCSS
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh------------------hccCCCCCEEECCCC
Confidence 3556666777777777666666 56667777777776654 555542 344466666666665
Q ss_pred cccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc
Q 040680 351 GVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL 409 (459)
Q Consensus 351 ~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 409 (459)
....+|.+.. ++|+.|++++| .++.++. + ..+++|+.|+|++| ++..++
T Consensus 96 --~l~~l~~~~~-~~L~~L~L~~N-~l~~~~~--l---~~l~~L~~L~Ls~N-~i~~~~ 144 (263)
T 1xeu_A 96 --RLKNLNGIPS-ACLSRLFLDNN-ELRDTDS--L---IHLKNLEILSIRNN-KLKSIV 144 (263)
T ss_dssp --CCSCCTTCCC-SSCCEEECCSS-CCSBSGG--G---TTCTTCCEEECTTS-CCCBCG
T ss_pred --ccCCcCcccc-CcccEEEccCC-ccCCChh--h---cCcccccEEECCCC-cCCCCh
Confidence 3333444333 56666666654 3433321 1 14556666666653 344443
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=7.7e-13 Score=124.41 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=107.5
Q ss_pred ccCccccCCCccceEeecCCCCccccCc--ccccccCCCeeccCCCccccccccccccCC---CCCcc-----hHHHhhc
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPN--SVSKLLNLETPDCNGCRSLAELPRILEGCG---HTDVD-----VEALLDD 335 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---~~~~~-----~~~~~~~ 335 (459)
..+|..+..+++|++|++++|.+..++. .+.++++|++|++++|......|..+..+. ..... ...++..
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 3456667777888888888887777664 677788888888887653333444443332 11111 1135677
Q ss_pred cCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-cccccc
Q 040680 336 LKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRIDN 414 (459)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~ 414 (459)
++.+++|++|++++|.........++.+++|++|+++++ .+..++...+. .+++|+.|+|++|. +... +..+.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N~-l~~~~~~~~~- 244 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYK---CLNSLQVLDYSLNH-IMTSKKQELQ- 244 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGT---TCTTCCEEECTTSC-CCBCSSSSCC-
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhcc---CcccCCEeECCCCC-CcccCHHHHH-
Confidence 889999999999999332222234899999999999986 46666554333 78999999999974 5443 33333
Q ss_pred CCCCCCcCCCCCCCC-CccceeeecCCCC
Q 040680 415 DADGSKIDMIEPPSF-PCLSELDISGCPK 442 (459)
Q Consensus 415 ~~~~~~~~~~~~~~l-~~L~~L~l~~c~~ 442 (459)
.+ ++|+.|++++|+.
T Consensus 245 -------------~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 245 -------------HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp -------------CCCTTCCEEECTTCCE
T ss_pred -------------hhhccCCEEEccCCCe
Confidence 56 4999999999964
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=4.8e-13 Score=141.81 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=15.4
Q ss_pred CCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 428 SFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 428 ~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.+++|+.|++++|...+.+|. +++|+ .|.+
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~-~L~l 711 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDL 711 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCS-EEEC
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCC-EEEC
Confidence 455555555555544445554 44455 4443
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=9.1e-13 Score=131.96 Aligned_cols=183 Identities=19% Similarity=0.163 Sum_probs=92.1
Q ss_pred CccccCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCccccccccccccCCCCC---cch----HHHhhccCCC
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCRSLAELPRILEGCGHTD---VDV----EALLDDLKPH 339 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~~~----~~~~~~l~~l 339 (459)
.|..|.++++|++|++++|.+..+|.. |.++++|++|++++|......|..+..+.-.. ... ...+..++.+
T Consensus 72 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC
Confidence 355667777777777777777766653 56777777777777553222233333221000 000 1113345556
Q ss_pred CCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccC--
Q 040680 340 KNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDND-- 415 (459)
Q Consensus 340 ~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~-- 415 (459)
++|++|++++| ....++. ++.+++|+.|+++++ .+..++...+. .+++|+.|++++|+.+..++......
T Consensus 152 ~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 152 NSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFK---RLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSC---SCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred CCCCEEECCCC--cCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcc---cCcccceeeCCCCccccccCcccccCcc
Confidence 66666666666 2333332 555556666666553 33333332222 45566666666655544444322200
Q ss_pred -----CCCCCcCCCCC---CCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 416 -----ADGSKIDMIEP---PSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 416 -----~~~~~~~~~~~---~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
..+..+..++. ..+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~L 279 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQ-EIQL 279 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCC-EEEC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCC-EEEC
Confidence 00111111111 15677777777777 3555543 56666 6654
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=2.8e-12 Score=113.37 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=104.0
Q ss_pred ccCccccCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
..+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. .+..+++|++
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------------~~~~l~~L~~ 80 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNG----------------VFNKLTSLTY 80 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT----------------TTTTCTTCCE
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChh----------------hcCCCCCcCE
Confidence 3455443 45789999999998888764 6889999999999865 6667643 4567789999
Q ss_pred EeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcC
Q 040680 345 LSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKID 422 (459)
Q Consensus 345 L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 422 (459)
|++++| ....++. ++.+++|++|+++++ .++.++...+. .+++|+.|+|+++ .+..++.....
T Consensus 81 L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~~~-------- 145 (208)
T 2o6s_A 81 LNLSTN--QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFD---KLTQLKDLRLYQN-QLKSVPDGVFD-------- 145 (208)
T ss_dssp EECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTT--------
T ss_pred EECCCC--cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhc---cCCcCCEEECCCC-ccceeCHHHhc--------
Confidence 999988 3334443 788899999999875 56666654443 6888999999885 57766654221
Q ss_pred CCCCCCCCccceeeecCCCCCCCCC
Q 040680 423 MIEPPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l~~lP 447 (459)
.+++|+.|++++|+.....|
T Consensus 146 -----~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 146 -----RLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp -----TCTTCCEEECCSCCBCCCTT
T ss_pred -----cCCCccEEEecCCCeecCCC
Confidence 67888888888886555544
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=1.1e-12 Score=121.51 Aligned_cols=169 Identities=18% Similarity=0.163 Sum_probs=74.7
Q ss_pred ccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCcccccccc-ccccCCCCC---c---chHHH-hhccCCCCC
Q 040680 271 SISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPR-ILEGCGHTD---V---DVEAL-LDDLKPHKN 341 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~~~~~---~---~~~~~-~~~l~~l~~ 341 (459)
.+.++++|++|++++|.+..++. .+.++++|++|++++|. +..++. .+..+.... . ....+ +..++.+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 44555555555555555554443 45555555555555543 333331 111110000 0 00000 012445555
Q ss_pred cceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcC-EEeecCCCCCCccccccccCCCCC
Q 040680 342 LRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLE-YISILGCPELKGWLRRIDNDADGS 419 (459)
Q Consensus 342 L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~ 419 (459)
|++|++++|......+|. ++.+++|++|+++++ .++.++...+.....++.|. .|+++++ .+..++....
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~------ 197 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF------ 197 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSS------
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCC-cccccCcccc------
Confidence 666666555221111232 555556666666553 33333332222111122222 4444442 3443333222
Q ss_pred CcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 420 KIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
..++|++|++++| .++.+|. +++|+ .|.+
T Consensus 198 --------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l 231 (276)
T 2z62_A 198 --------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQ-KIWL 231 (276)
T ss_dssp --------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCC-EEEC
T ss_pred --------CCCcccEEECCCC-ceeecCHhHhccccccc-EEEc
Confidence 3447888888777 4666665 55666 6654
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=131.11 Aligned_cols=171 Identities=21% Similarity=0.164 Sum_probs=98.1
Q ss_pred CccccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccc-cccCC---CCCcch----HHHhhccCC
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRI-LEGCG---HTDVDV----EALLDDLKP 338 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~---~~~~~~----~~~~~~l~~ 338 (459)
.+..|.++++|++|++++|.+..+ |..|+++++|++|++++|. +..+|.. +..+. ...... ...+..+..
T Consensus 48 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 48 NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence 356788899999999999998877 6789999999999999865 7777754 22221 111100 111233444
Q ss_pred CCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCC
Q 040680 339 HKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADG 418 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 418 (459)
+++|++|++++|.........|+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ .+..++....
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~---~l~~L~~L~l~~n-~i~~~~~~~~----- 196 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALS---HLHGLIVLRLRHL-NINAIRDYSF----- 196 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHT---TCTTCCEEEEESC-CCCEECTTCS-----
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhc---ccCCCcEEeCCCC-cCcEeChhhc-----
Confidence 455555555544211111112445555555555543 23333332222 4455555555553 3333332111
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
..+++|+.|++++|+.+..+|. .++|+ .|.+
T Consensus 197 --------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l 231 (477)
T 2id5_A 197 --------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLT-SLSI 231 (477)
T ss_dssp --------CSCTTCCEEEEECCTTCCEECTTTTTTCCCS-EEEE
T ss_pred --------ccCcccceeeCCCCccccccCcccccCcccc-EEEC
Confidence 1678888889988888888876 34677 7765
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=8.3e-13 Score=126.85 Aligned_cols=169 Identities=20% Similarity=0.268 Sum_probs=92.0
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCcccccccc-ccccCCCC---C---cchHHHhhc-
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPR-ILEGCGHT---D---VDVEALLDD- 335 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~~~~---~---~~~~~~~~~- 335 (459)
+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..++. .+..+.-. . .....++..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 556777654 489999999999999887 79999999999999975 666643 33322100 0 000112211
Q ss_pred cCCCCCcceEeeeeecccccCCCC---CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-ccc
Q 040680 336 LKPHKNLRELSIFYFGVRCQYIPQ---LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRR 411 (459)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~ 411 (459)
++.+++|++|++++| ....+|. ++.+++|++|+++++..+..++...+. .+++|+.|++++| .+..+ +..
T Consensus 120 ~~~l~~L~~L~L~~n--~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~ 193 (353)
T 2z80_A 120 FKPLSSLTFLNLLGN--PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDAS-DLQSYEPKS 193 (353)
T ss_dssp HTTCTTCSEEECTTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEET-TCCEECTTT
T ss_pred hCCCccCCEEECCCC--CCcccCchhhhccCCCCcEEECCCCccccccCHHHcc---CCCCCCEEECCCC-CcCccCHHH
Confidence 444455555555544 2222222 444555555555544334444332222 4445555555553 23322 222
Q ss_pred cccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 412 IDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
+. .+++|++|++++| .++.+|. +++|+ .|.+
T Consensus 194 l~--------------~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L 229 (353)
T 2z80_A 194 LK--------------SIQNVSHLILHMK-QHILLLEIFVDVTSSVE-CLEL 229 (353)
T ss_dssp TT--------------TCSEEEEEEEECS-CSTTHHHHHHHHTTTEE-EEEE
T ss_pred Hh--------------ccccCCeecCCCC-ccccchhhhhhhccccc-EEEC
Confidence 22 5666666666666 3555554 55566 5554
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=2.9e-13 Score=135.70 Aligned_cols=165 Identities=17% Similarity=0.137 Sum_probs=101.3
Q ss_pred CccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---------------------CCC
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---------------------HTD 326 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---------------------~~~ 326 (459)
.|..|+.+++|++|++++|.+..+++ ++.+++|++|++++|. +..+|.. ..+. ...
T Consensus 50 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~-~~L~~L~L~~N~l~~~~~~~l~~L~~L~ 126 (487)
T 3oja_A 50 SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG-PSIETLHAANNNISRVSCSRGQGKKNIY 126 (487)
T ss_dssp CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCSSCCCCEEECCCSSCEEEE
T ss_pred CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCC-CCcCEEECcCCcCCCCCccccCCCCEEE
Confidence 45678888899999999988886665 8888889888888865 5666532 1110 000
Q ss_pred cc---h-HHHhhccCCCCCcceEeeeeecccccCCCCCC-CCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecC
Q 040680 327 VD---V-EALLDDLKPHKNLRELSIFYFGVRCQYIPQLE-QLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILG 401 (459)
Q Consensus 327 ~~---~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~ 401 (459)
.. . ...+..++.+++|++|++++|......++.+. .+++|++|++++| .++.++... .+++|+.|+|++
T Consensus 127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~-----~l~~L~~L~Ls~ 200 (487)
T 3oja_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-----VFAKLKTLDLSS 200 (487)
T ss_dssp CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-----CCTTCCEEECCS
T ss_pred CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccc-----cCCCCCEEECCC
Confidence 00 0 11233455556666666666622222222333 5666666666664 344443221 567777777777
Q ss_pred CCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 402 CPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
| .+..+|..+. .+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 201 N-~l~~~~~~~~--------------~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~-~L~l 244 (487)
T 3oja_A 201 N-KLAFMGPEFQ--------------SAAGVTWISLRNN-KLVLIEKALRFSQNLE-HFDL 244 (487)
T ss_dssp S-CCCEECGGGG--------------GGTTCSEEECTTS-CCCEECTTCCCCTTCC-EEEC
T ss_pred C-CCCCCCHhHc--------------CCCCccEEEecCC-cCcccchhhccCCCCC-EEEc
Confidence 4 5666665554 6788888888888 5777776 56677 6654
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=1.1e-12 Score=121.36 Aligned_cols=138 Identities=16% Similarity=0.175 Sum_probs=84.9
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
...+|..+. .+|++|++++|.+..++. .+.++++|++|++++|. +..+|.. .++.+++|+
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------------~~~~l~~L~ 79 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG----------------AYQSLSHLS 79 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTT----------------TTTTCTTCC
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHH----------------HccCCcCCC
Confidence 445666554 479999999999998876 89999999999999975 6666642 345556666
Q ss_pred eEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCc--cccccccCCCCCCc
Q 040680 344 ELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKG--WLRRIDNDADGSKI 421 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--~~~~~~~~~~~~~~ 421 (459)
+|++++|.........++++++|++|+++++ .+..++...+. .+++|+.|+++++ .+.. +|..+.
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~l~~~~~-------- 146 (276)
T 2z62_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG---HLKTLKELNVAHN-LIQSFKLPEYFS-------- 146 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCT---TCTTCCEEECCSS-CCCCCCCCGGGG--------
T ss_pred EEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcc---cCCCCCEEECcCC-ccceecCchhhc--------
Confidence 6666666221111123666666666666654 33333332222 5566666666663 3433 333333
Q ss_pred CCCCCCCCCccceeeecCC
Q 040680 422 DMIEPPSFPCLSELDISGC 440 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c 440 (459)
.+++|+.|++++|
T Consensus 147 ------~l~~L~~L~Ls~N 159 (276)
T 2z62_A 147 ------NLTNLEHLDLSSN 159 (276)
T ss_dssp ------GCTTCCEEECCSS
T ss_pred ------cCCCCCEEECCCC
Confidence 4555555555555
No 47
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=3.4e-12 Score=113.86 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=111.1
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
+.++.+++.++.+|..+. ++|+.|++++|. +..+|.. .+..+++|++|++++|........
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~----------------~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPG----------------AFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTT----------------SSTTCTTCCEEECCSSCCCEECTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHh----------------HhhCCCCCCEEECCCCcCCCcCHH
Confidence 578999999999998765 789999999965 7777643 567789999999999933322233
Q ss_pred CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCCCCCcCCCCCCCCCccceeee
Q 040680 359 QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDADGSKIDMIEPPSFPCLSELDI 437 (459)
Q Consensus 359 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l 437 (459)
.|.++++|++|+++++ .++.++...+. .+++|+.|+|+++ .+..++.. +. .+++|+.|++
T Consensus 75 ~~~~l~~L~~L~Ls~N-~l~~l~~~~f~---~l~~L~~L~L~~N-~l~~~~~~~~~--------------~l~~L~~L~L 135 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGN-KITELPKSLFE---GLFSLQLLLLNAN-KINCLRVDAFQ--------------DLHNLNLLSL 135 (220)
T ss_dssp TTTTCSSCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTT--------------TCTTCCEEEC
T ss_pred HhhCCcCCCEEECCCC-cCCccCHhHcc---CCCCCCEEECCCC-CCCEeCHHHcC--------------CCCCCCEEEC
Confidence 5999999999999985 67788776554 7899999999995 67776543 33 7899999999
Q ss_pred cCCCCCCCCCC-----CCCCccceee
Q 040680 438 SGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 438 ~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
++| .++.+|. +++|+ .|.+
T Consensus 136 ~~N-~l~~~~~~~~~~l~~L~-~L~L 159 (220)
T 2v9t_B 136 YDN-KLQTIAKGTFSPLRAIQ-TMHL 159 (220)
T ss_dssp CSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred CCC-cCCEECHHHHhCCCCCC-EEEe
Confidence 999 6777775 67787 7765
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.39 E-value=2.1e-12 Score=123.68 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=78.3
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCC---Cc---chHHHhhccCCCCCcceE
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHT---DV---DVEALLDDLKPHKNLREL 345 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~---~~---~~~~~~~~l~~l~~L~~L 345 (459)
+..+++|++|++++|.+..+|. +.++++|++|++++|. +..+|. +..+... .. ....++ .+..+++|++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~l~~n~i~~~~-~~~~l~~L~~L 137 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKMYSL 137 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEECTTSCCCCCG-GGTTCTTCCEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchH-HcCCCcCCEEECcCCcccCch-hhccCCceeEE
Confidence 5667777777777777777666 7777777777777754 555541 2111000 00 000001 13344455555
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
++++| .....++.+..+++|++|++++|. +..++. + ..+++|+.|++++| .+..++. ..
T Consensus 138 ~l~~n-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~---~~l~~L~~L~l~~n-~l~~~~~-~~------------ 196 (347)
T 4fmz_A 138 NLGAN-HNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--I---ANLTDLYSLSLNYN-QIEDISP-LA------------ 196 (347)
T ss_dssp ECTTC-TTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--G---GGCTTCSEEECTTS-CCCCCGG-GG------------
T ss_pred ECCCC-CCcccccchhhCCCCcEEEecCCC-cCCchh--h---ccCCCCCEEEccCC-ccccccc-cc------------
Confidence 55444 112223334445555555555432 222221 1 14555555555554 3444333 22
Q ss_pred CCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 426 PPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|+.|++++| .+..++. +++|+ .|.+
T Consensus 197 --~l~~L~~L~l~~n-~l~~~~~~~~~~~L~-~L~l 228 (347)
T 4fmz_A 197 --SLTSLHYFTAYVN-QITDITPVANMTRLN-SLKI 228 (347)
T ss_dssp --GCTTCCEEECCSS-CCCCCGGGGGCTTCC-EEEC
T ss_pred --CCCccceeecccC-CCCCCchhhcCCcCC-EEEc
Confidence 5667777777776 4555443 56666 6654
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=8.3e-13 Score=112.54 Aligned_cols=135 Identities=20% Similarity=0.190 Sum_probs=107.4
Q ss_pred CCCccceEeecCCCCcc--ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 273 SKLKHLWYLNLPGNGIT--KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
....+|++|++++|.+. .+|..+..+++|++|++++|. +..++ .++.+++|++|++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~------------------~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS------------------NLPKLPKLKKLELSEN 81 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCS------------------SCCCCSSCCEEEEESC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChh------------------hhccCCCCCEEECcCC
Confidence 34578999999999998 899999999999999999976 66552 5677899999999999
Q ss_pred cccccC-CCC-CCCCCCCcEEecCCCcCcceecc-ccCcCCCCCCCcCEEeecCCCCCCcccc----ccccCCCCCCcCC
Q 040680 351 GVRCQY-IPQ-LEQLPSLKSLTLSWLDALVYICF-SSIASRTRFSSLEYISILGCPELKGWLR----RIDNDADGSKIDM 423 (459)
Q Consensus 351 ~~~~~~-l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~~----~~~~~~~~~~~~~ 423 (459)
. ... +|. ++.+++|++|++++| .++.++. ..+. .+++|+.|++++| .+..++. .+.
T Consensus 82 ~--l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~---~l~~L~~L~l~~N-~l~~~~~~~~~~~~---------- 144 (168)
T 2ell_A 82 R--IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK---KLECLKSLDLFNC-EVTNLNDYRESVFK---------- 144 (168)
T ss_dssp C--CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS---SCSCCCEEECCSS-GGGTSTTHHHHHHT----------
T ss_pred c--CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHh---cCCCCCEEEeeCC-cCcchHHHHHHHHH----------
Confidence 3 333 555 566999999999986 5666542 2223 7899999999996 5777665 344
Q ss_pred CCCCCCCccceeeecCCCCCCCCCC
Q 040680 424 IEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 424 ~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.+++|+.|++++| ...++|.
T Consensus 145 ----~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 145 ----LLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp ----TCSSCCEETTEET-TSCBCCS
T ss_pred ----hCccCcEecCCCC-Chhhccc
Confidence 7999999999999 5777775
No 50
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=3e-12 Score=114.21 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=105.3
Q ss_pred cccCccccCCCccceEeecCCCCccccCc--ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN--SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNL 342 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (459)
+..+|..+.. .+++|++++|.++.++. .|.++++|++|++++|. +..+|.. .++.+++|
T Consensus 23 l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~----------------~~~~l~~L 83 (220)
T 2v70_A 23 LNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG----------------AFEGASGV 83 (220)
T ss_dssp CSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT----------------TTTTCTTC
T ss_pred cccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHH----------------HhCCCCCC
Confidence 4556765543 46899999999998843 48899999999999965 6777642 56777999
Q ss_pred ceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-ccccccCCCCC
Q 040680 343 RELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRIDNDADGS 419 (459)
Q Consensus 343 ~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~ 419 (459)
++|++++| ....++. |+.+++|++|+++++ .+..++...+. .+++|+.|+|+++ .+..+ |..+.
T Consensus 84 ~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~------ 150 (220)
T 2v70_A 84 NEILLTSN--RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFI---GLSSVRLLSLYDN-QITTVAPGAFD------ 150 (220)
T ss_dssp CEEECCSS--CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSST---TCTTCSEEECTTS-CCCCBCTTTTT------
T ss_pred CEEECCCC--ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcC---CCccCCEEECCCC-cCCEECHHHhc------
Confidence 99999999 4444443 889999999999985 56666554444 7889999999985 67776 44444
Q ss_pred CcCCCCCCCCCccceeeecCCCC
Q 040680 420 KIDMIEPPSFPCLSELDISGCPK 442 (459)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~c~~ 442 (459)
.+++|+.|++++|+.
T Consensus 151 --------~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 151 --------TLHSLSTLNLLANPF 165 (220)
T ss_dssp --------TCTTCCEEECCSCCE
T ss_pred --------CCCCCCEEEecCcCC
Confidence 789999999999863
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=1.8e-12 Score=133.54 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=18.8
Q ss_pred cCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCc
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCR 310 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 310 (459)
|+++++|++|++++|.+..+|.. |+++++|++|++++|.
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 34455555555555555444443 2445555555555443
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.38 E-value=2.4e-12 Score=125.33 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=21.6
Q ss_pred ccCCCccceEeecCCCCccccCcc-cccccCCCeeccCCCc
Q 040680 271 SISKLKHLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCR 310 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 310 (459)
.++++++|++|++++|.+..+|.. ++++++|++|++++|.
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 345555555555555555555544 3555555555555543
No 53
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.38 E-value=1.9e-12 Score=137.32 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=73.7
Q ss_pred hhccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccc
Q 040680 333 LDDLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRI 412 (459)
Q Consensus 333 ~~~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 412 (459)
|..++.+++|++|++++|......+..++.+++|+.|+++++.-...+|..+ + .+++|+.|+|++|.--..+|..+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~---~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-G---DLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-G---GCTTCCEEECCSSCCEECCCGGG
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-h---CCCCCCEEECCCCcccCcCChHH
Confidence 4456667788888888884443444458888888888888865444666544 3 78889999999865445777776
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
. .+++|+.|++++|+..+.+|.
T Consensus 701 ~--------------~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 701 S--------------ALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp G--------------GCCCCSEEECCSSEEEEECCS
T ss_pred h--------------CCCCCCEEECcCCcccccCCC
Confidence 6 799999999999988788997
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.38 E-value=3.3e-13 Score=139.94 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=71.5
Q ss_pred cccCcccccccCCCeeccCCCccccc--cccccccCCCCCcch----HHHhhccC--CCCCcceEeeeeecccccCCCCC
Q 040680 289 TKLPNSVSKLLNLETPDCNGCRSLAE--LPRILEGCGHTDVDV----EALLDDLK--PHKNLRELSIFYFGVRCQYIPQL 360 (459)
Q Consensus 289 ~~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~----~~~~~~l~--~l~~L~~L~l~~~~~~~~~l~~l 360 (459)
+.+|..++++++|++|++++|. +.. ++. .|..... ..+|..++ ++++|++|++++|......++.+
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~-----~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICE-----AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCC-CCGGGBSS-----SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred ccCCHHHhcccCCCEEECcCCc-cccccccc-----cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 3588899999999999999977 444 110 1111110 12455666 77888888888884333334458
Q ss_pred CCCCCCcEEecCCCcCcc--eeccccCc--CCCCCCCcCEEeecCCCCCCcccc
Q 040680 361 EQLPSLKSLTLSWLDALV--YICFSSIA--SRTRFSSLEYISILGCPELKGWLR 410 (459)
Q Consensus 361 ~~l~~L~~L~l~~~~~l~--~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~ 410 (459)
+++++|++|+++++..++ .+|..... ....+++|+.|+|++| ++..+|.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~ 322 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPV 322 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCc
Confidence 888888888888875344 35543210 0012367777777775 4556666
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=3.1e-12 Score=123.19 Aligned_cols=147 Identities=22% Similarity=0.265 Sum_probs=111.7
Q ss_pred cccCccccCCCccceEeecCCCCccccCcc-cc-cccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNS-VS-KLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNL 342 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~-~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (459)
+..+|..+. ..+++|+|++|.++.+|.. +. ++++|++|++++|. +..+|.. .+..+++|
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~----------------~~~~l~~L 90 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE----------------AFVPVPNL 90 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTT----------------TTTTCTTC
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChh----------------hccCCCCC
Confidence 555676554 3589999999999988765 55 89999999999965 7777633 56778999
Q ss_pred ceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCC
Q 040680 343 RELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSK 420 (459)
Q Consensus 343 ~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 420 (459)
++|++++| ....++. |..+++|+.|+|+++ .+..++...+. .+++|+.|+|+++ .+..+|......
T Consensus 91 ~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~----- 158 (361)
T 2xot_A 91 RYLDLSSN--HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFE---DMAQLQKLYLSQN-QISRFPVELIKD----- 158 (361)
T ss_dssp CEEECCSS--CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCSCCGGGTC------
T ss_pred CEEECCCC--cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhC---CcccCCEEECCCC-cCCeeCHHHhcC-----
Confidence 99999999 3444443 889999999999985 56666554444 7899999999984 788887654200
Q ss_pred cCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 421 IDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
...+++|+.|+|++| .+..+|.
T Consensus 159 -----~~~l~~L~~L~L~~N-~l~~l~~ 180 (361)
T 2xot_A 159 -----GNKLPKLMLLDLSSN-KLKKLPL 180 (361)
T ss_dssp --------CTTCCEEECCSS-CCCCCCH
T ss_pred -----cccCCcCCEEECCCC-CCCccCH
Confidence 005899999999999 6888885
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=2e-12 Score=125.97 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=68.3
Q ss_pred ccCccc-cCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 266 EIVPSS-ISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 266 ~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
..+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. .++.+++|+
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----------------~~~~l~~L~ 120 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH----------------VFQNVPLLT 120 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT----------------TTTTCTTCC
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH----------------HhcCCCCCC
Confidence 334443 4667777777777777776654 67777777777777755 5555422 345556677
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
+|++++| ....+|. |+.+++|++|+++++ .+..++...+. .+++|+.|+++++
T Consensus 121 ~L~L~~n--~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~l~~n 175 (390)
T 3o6n_A 121 VLVLERN--DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ---ATTSLQNLQLSSN 175 (390)
T ss_dssp EEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTS---SCTTCCEEECCSS
T ss_pred EEECCCC--ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhcc---CCCCCCEEECCCC
Confidence 7776666 3334443 566666777776664 34444433332 5566666666664
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.37 E-value=9.4e-13 Score=134.23 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=67.1
Q ss_pred CccccCCCccceEeecCCCCccccC-cccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEe
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLP-NSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELS 346 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (459)
.|..+.++++|++|++++|.+..++ ..|+++++|++|++++|. +..+|.. .++.+++|++|+
T Consensus 42 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----------------~~~~l~~L~~L~ 104 (549)
T 2z81_A 42 GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSS----------------WFGPLSSLKYLN 104 (549)
T ss_dssp CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHH----------------HHTTCTTCCEEE
T ss_pred ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHH----------------HhccCCCCcEEE
Confidence 3556777888888888888777665 467788888888888765 5555432 244456666666
Q ss_pred eeeecccccCC-CCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 347 IFYFGVRCQYI-PQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 347 l~~~~~~~~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
+++|....... +.++++++|++|+++++..+..++...+. .+++|+.|++++|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L~~L~L~~n 158 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA---GLTSLNELEIKAL 158 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEET
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh---cccccCeeeccCC
Confidence 66552211112 23555666666666655444444433322 4555555555553
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=3.1e-12 Score=131.74 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=53.9
Q ss_pred CccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCcccccccccc-ccCC---CCCcc---h-HHHhhccCC
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRIL-EGCG---HTDVD---V-EALLDDLKP 338 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~---~~~~~---~-~~~~~~l~~ 338 (459)
.|..|+.+++|++|++++|.+..+|+ .|+++++|++|++++|. +..+|..+ ..+. ..... . ...+..++.
T Consensus 91 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 34578889999999999999887765 46889999999999865 67777652 3331 11111 1 112334566
Q ss_pred CCCcceEeeeee
Q 040680 339 HKNLRELSIFYF 350 (459)
Q Consensus 339 l~~L~~L~l~~~ 350 (459)
+++|++|++++|
T Consensus 170 l~~L~~L~L~~N 181 (597)
T 3oja_B 170 TTSLQNLQLSSN 181 (597)
T ss_dssp CTTCCEEECTTS
T ss_pred CCcCcEEECcCC
Confidence 666666666665
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=2.1e-12 Score=133.35 Aligned_cols=169 Identities=16% Similarity=0.079 Sum_probs=111.8
Q ss_pred ccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccc-cccccCC---CCCcch----HHHhhccCCCC
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELP-RILEGCG---HTDVDV----EALLDDLKPHK 340 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~---~~~~~~----~~~~~~l~~l~ 340 (459)
|..+..+++|++|++++|.+..+|..+..+++|++|++++|......| ..+..+. ...... ...+..++.++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 566777888888888888888788778888888888888765333333 2333222 111111 22455677788
Q ss_pred CcceEeeeeecccccCCC-CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-ccccccCCCC
Q 040680 341 NLRELSIFYFGVRCQYIP-QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRIDNDADG 418 (459)
Q Consensus 341 ~L~~L~l~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~ 418 (459)
+|++|++++|......+| .++.+++|++|++++| .++.++...+. .+++|+.|+|++| ++..+ |..+.
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~----- 518 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFD---TLHRLQLLNMSHN-NLLFLDSSHYN----- 518 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCSCEEGGGTT-----
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhc---ccccCCEEECCCC-cCCCcCHHHcc-----
Confidence 888888888733332244 3788888888888886 45555444333 6788888888886 45554 44444
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCCCCCC----CC-CCccceee
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLILIPL----YP-YLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~-~L~~~L~i 458 (459)
.+++|+.|++++| .+..+|. ++ +|+ .|.+
T Consensus 519 ---------~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~-~l~l 552 (606)
T 3vq2_A 519 ---------QLYSLSTLDCSFN-RIETSKGILQHFPKSLA-FFNL 552 (606)
T ss_dssp ---------TCTTCCEEECTTS-CCCCEESCGGGSCTTCC-EEEC
T ss_pred ---------CCCcCCEEECCCC-cCcccCHhHhhhcccCc-EEEc
Confidence 6888888888888 5778886 55 477 7765
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=9.6e-13 Score=115.32 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=106.2
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|..-...| ..++.+++|++
T Consensus 56 i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~-----------------~~l~~l~~L~~ 116 (197)
T 4ezg_A 56 VTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKI-----------------PNLSGLTSLTL 116 (197)
T ss_dssp CSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGS-----------------CCCTTCTTCCE
T ss_pred ccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccC-----------------hhhcCCCCCCE
Confidence 34455 6888999999999999877665 78999999999999976322233 35677799999
Q ss_pred EeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCC
Q 040680 345 LSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMI 424 (459)
Q Consensus 345 L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (459)
|++++|......++.++.+++|++|++++|..++.++. +. .+++|+.|++++| .+..++ ...
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~---~l~~L~~L~l~~n-~i~~~~-~l~----------- 178 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LK---TLPELKSLNIQFD-GVHDYR-GIE----------- 178 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GG---GCSSCCEEECTTB-CCCCCT-TGG-----------
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hc---CCCCCCEEECCCC-CCcChH-Hhc-----------
Confidence 99999943332344588999999999999865776652 22 7899999999996 577765 333
Q ss_pred CCCCCCccceeeecCCC
Q 040680 425 EPPSFPCLSELDISGCP 441 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~c~ 441 (459)
.+++|+.|++++|+
T Consensus 179 ---~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 ---DFPKLNQLYAFSQT 192 (197)
T ss_dssp ---GCSSCCEEEECBC-
T ss_pred ---cCCCCCEEEeeCcc
Confidence 79999999999985
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=6.3e-13 Score=125.70 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=96.1
Q ss_pred ccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---------------------CCC-
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---------------------HTD- 326 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---------------------~~~- 326 (459)
|..+.++++|++|++++|.+..+++ +..+++|++|++++|. +..+|.. ..+. ...
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 127 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG-PSIETLHAANNNISRVSCSRGQGKKNIYL 127 (317)
T ss_dssp HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCSSCCSEEEECCCSSCEEEEC
T ss_pred HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccCC-CCcCEEECCCCccCCcCccccCCCCEEEC
Confidence 3567777888888888887776654 7777888888887764 5555422 1110 000
Q ss_pred --cchHHH-hhccCCCCCcceEeeeeecccccCCCCC-CCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 327 --VDVEAL-LDDLKPHKNLRELSIFYFGVRCQYIPQL-EQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 327 --~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~l~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
.....+ +..++.+++|++|++++|......++.+ ..+++|++|+++++ .++.++... .+++|+.|+|++|
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----~l~~L~~L~Ls~N 201 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-----VFAKLKTLDLSSN 201 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-----CCTTCCEEECCSS
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-----ccccCCEEECCCC
Confidence 000111 2244455666666666552211112222 34566666666664 344443221 4677777777774
Q ss_pred CCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 403 PELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.+..++..+. .+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 202 -~l~~l~~~~~--------------~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~-~L~l 244 (317)
T 3o53_A 202 -KLAFMGPEFQ--------------SAAGVTWISLRNN-KLVLIEKALRFSQNLE-HFDL 244 (317)
T ss_dssp -CCCEECGGGG--------------GGTTCSEEECTTS-CCCEECTTCCCCTTCC-EEEC
T ss_pred -cCCcchhhhc--------------ccCcccEEECcCC-cccchhhHhhcCCCCC-EEEc
Confidence 5666665554 6788999999888 6777876 56777 7765
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=2.2e-12 Score=120.32 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=114.4
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+..+.+|++|++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~------------------l~~l~~L~~L~l~~n- 100 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP------------------LANLKNLGWLFLDEN- 100 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG------------------GTTCTTCCEEECCSS-
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc------------------cccCCCCCEEECCCC-
Confidence 4568889999999999998864 8999999999999976 666652 567799999999999
Q ss_pred ccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCc
Q 040680 352 VRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPC 431 (459)
Q Consensus 352 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (459)
....++.++.+++|++|++++| .+..++. +. .+++|+.|++++| .+..++ .+. .+++
T Consensus 101 -~l~~~~~l~~l~~L~~L~L~~n-~i~~~~~--l~---~l~~L~~L~l~~n-~l~~~~-~l~--------------~l~~ 157 (291)
T 1h6t_A 101 -KVKDLSSLKDLKKLKSLSLEHN-GISDING--LV---HLPQLESLYLGNN-KITDIT-VLS--------------RLTK 157 (291)
T ss_dssp -CCCCGGGGTTCTTCCEEECTTS-CCCCCGG--GG---GCTTCCEEECCSS-CCCCCG-GGG--------------GCTT
T ss_pred -cCCCChhhccCCCCCEEECCCC-cCCCChh--hc---CCCCCCEEEccCC-cCCcch-hhc--------------cCCC
Confidence 4556777999999999999986 4655532 22 7899999999996 577763 334 7899
Q ss_pred cceeeecCCCCCCCCCC---CCCCccceee
Q 040680 432 LSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 432 L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
|+.|++++| .+..+|. +++|+ .|.+
T Consensus 158 L~~L~L~~N-~l~~~~~l~~l~~L~-~L~L 185 (291)
T 1h6t_A 158 LDTLSLEDN-QISDIVPLAGLTKLQ-NLYL 185 (291)
T ss_dssp CSEEECCSS-CCCCCGGGTTCTTCC-EEEC
T ss_pred CCEEEccCC-ccccchhhcCCCccC-EEEC
Confidence 999999999 6777766 77888 7765
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=2e-12 Score=134.03 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=102.8
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+- .++++|+|++|.|+.+|+ +|.++++|++|++++|. +..+|.. .|+.+++|+
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~----------------~f~~L~~L~ 103 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG----------------AYQSLSHLS 103 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT----------------TTTTCTTCC
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChh----------------HhcCCCCCC
Confidence 445665542 368888999998888875 68889999999998865 7777643 567778888
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc--ccccccCCCCC
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW--LRRIDNDADGS 419 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~ 419 (459)
+|++++| ....+|. |+++++|++|+++++ .++.++...++ .+++|+.|+|+++ .+..+ |....
T Consensus 104 ~L~Ls~N--~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~---~L~~L~~L~Ls~N-~l~~~~~~~~~~------ 170 (635)
T 4g8a_A 104 TLILTGN--PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG---HLKTLKELNVAHN-LIQSFKLPEYFS------ 170 (635)
T ss_dssp EEECTTC--CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCT---TCTTCCEEECCSS-CCCCCCCCGGGG------
T ss_pred EEEccCC--cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhh---cCcccCeeccccC-ccccCCCchhhc------
Confidence 8888888 4455553 788888888888885 56666655444 7788888888885 45443 34444
Q ss_pred CcCCCCCCCCCccceeeecCCCCCCCCC
Q 040680 420 KIDMIEPPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~c~~l~~lP 447 (459)
.+++|++|++++| .++.++
T Consensus 171 --------~l~~L~~L~L~~N-~l~~~~ 189 (635)
T 4g8a_A 171 --------NLTNLEHLDLSSN-KIQSIY 189 (635)
T ss_dssp --------GCTTCCEEECCSS-CCCEEC
T ss_pred --------cchhhhhhcccCc-cccccc
Confidence 6788888888888 455544
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=1.3e-12 Score=123.18 Aligned_cols=166 Identities=18% Similarity=0.081 Sum_probs=102.0
Q ss_pred cCcccc--CCCccceEeecCCCCccccCcccccc-----cCCCeeccCCCccccccc-cccccCCCC---C-----cch-
Q 040680 267 IVPSSI--SKLKHLWYLNLPGNGITKLPNSVSKL-----LNLETPDCNGCRSLAELP-RILEGCGHT---D-----VDV- 329 (459)
Q Consensus 267 ~lp~~~--~~l~~L~~L~l~~~~i~~lp~~i~~l-----~~L~~L~l~~~~~l~~lp-~~~~~~~~~---~-----~~~- 329 (459)
..|..+ ..+++|++|++++|.+..+|..++.+ ++|++|++++|. +..+| ..+..+.-. . ...
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc
Confidence 566665 78888999999998888778877777 889999998866 55555 444333200 0 000
Q ss_pred HHHhhcc--CCCCCcceEeeeeecccccCCC----C-CCCCCCCcEEecCCCcCcceec-cccCcCCCCCCCcCEEeecC
Q 040680 330 EALLDDL--KPHKNLRELSIFYFGVRCQYIP----Q-LEQLPSLKSLTLSWLDALVYIC-FSSIASRTRFSSLEYISILG 401 (459)
Q Consensus 330 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~l~----~-l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~L~~ 401 (459)
..++..+ +.+++|++|++++| ....++ . +..+++|++|+++++. +...+ ...+. .+++|+.|+|++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~---~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNA--GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD---WPSQLNSLNLSF 262 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTS--CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC---CCTTCCEEECTT
T ss_pred hHHHHHHHhccCCCCCEEECCCC--cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh---hcCCCCEEECCC
Confidence 2234444 66677777777666 222111 1 3455677777777643 33322 12211 456777777777
Q ss_pred CCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 402 CPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
| .+..+|.. .+++|++|++++| .++.+|. +++|+ .|.+
T Consensus 263 N-~l~~ip~~----------------~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~-~L~L 303 (312)
T 1wwl_A 263 T-GLKQVPKG----------------LPAKLSVLDLSYN-RLDRNPSPDELPQVG-NLSL 303 (312)
T ss_dssp S-CCSSCCSS----------------CCSEEEEEECCSS-CCCSCCCTTTSCEEE-EEEC
T ss_pred C-ccChhhhh----------------ccCCceEEECCCC-CCCCChhHhhCCCCC-EEec
Confidence 4 45555543 3378899999888 6777776 56666 6654
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=4.7e-12 Score=120.33 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred cccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccc-cCCCCCcc---hHH-HhhccCCCCCcc
Q 040680 270 SSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILE-GCGHTDVD---VEA-LLDDLKPHKNLR 343 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~-~~~~~~~~---~~~-~~~~l~~l~~L~ 343 (459)
..+.++++|++|++++|.+..+ |..++++++|++|++++|. +..+|..+. .+...... ... .+..++.+++|+
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCcccc
Confidence 3577788888888888877766 6677888888888888754 666665431 11111000 011 122345556666
Q ss_pred eEeeeeecccc-cCCC-CCCCCCCCcEEecCCCc--------------------CcceeccccCcCCCCCCCcCEEeecC
Q 040680 344 ELSIFYFGVRC-QYIP-QLEQLPSLKSLTLSWLD--------------------ALVYICFSSIASRTRFSSLEYISILG 401 (459)
Q Consensus 344 ~L~l~~~~~~~-~~l~-~l~~l~~L~~L~l~~~~--------------------~l~~~~~~~~~~~~~l~~L~~L~L~~ 401 (459)
+|++++|.... ...+ .++.+++|++|+++++. .++.++...+. .+++|+.|+|++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~ 225 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSF 225 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGT---TCTTCCEEECCS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhc---CCCCCCEEECCC
Confidence 66666652111 1112 24555555555555431 22222222222 556666666666
Q ss_pred CCCCCcccc-ccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 402 CPELKGWLR-RIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 402 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
| .+..++. .+. .+++|++|++++| .+..+|. +++|+ .|.+
T Consensus 226 n-~l~~~~~~~~~--------------~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~-~L~l 270 (330)
T 1xku_A 226 N-SISAVDNGSLA--------------NTPHLRELHLNNN-KLVKVPGGLADHKYIQ-VVYL 270 (330)
T ss_dssp S-CCCEECTTTGG--------------GSTTCCEEECCSS-CCSSCCTTTTTCSSCC-EEEC
T ss_pred C-cCceeChhhcc--------------CCCCCCEEECCCC-cCccCChhhccCCCcC-EEEC
Confidence 4 3444433 222 6889999999999 6778887 67787 7765
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.33 E-value=5.6e-12 Score=120.68 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---CC---CcchHHHhhccCCCCCcceE
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---HT---DVDVEALLDDLKPHKNLREL 345 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---~~---~~~~~~~~~~l~~l~~L~~L 345 (459)
+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+. .. ......++ .+..+++|++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 248 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTWL 248 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCc-chhcCCCCCEE
Confidence 5556666666666666665554 5566666666666543 333332 11111 00 00001111 26777889999
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-ccccccCCCCCCcCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRIDNDADGSKIDMI 424 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~~~~~ 424 (459)
++++| ....++.+..+++|++|++++| .+..++. +. .+++|+.|++++|. +... +..+.
T Consensus 249 ~l~~n--~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~---~l~~L~~L~L~~n~-l~~~~~~~l~----------- 308 (347)
T 4fmz_A 249 EIGTN--QISDINAVKDLTKLKMLNVGSN-QISDISV--LN---NLSQLNSLFLNNNQ-LGNEDMEVIG----------- 308 (347)
T ss_dssp ECCSS--CCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GG---GCTTCSEEECCSSC-CCGGGHHHHH-----------
T ss_pred ECCCC--ccCCChhHhcCCCcCEEEccCC-ccCCChh--hc---CCCCCCEEECcCCc-CCCcChhHhh-----------
Confidence 99888 4445567888889999999886 4555532 22 77899999999874 4443 34444
Q ss_pred CCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 425 EPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|++|++++|+ +..+|. +++|+ .|++
T Consensus 309 ---~l~~L~~L~L~~n~-l~~~~~~~~l~~L~-~L~l 340 (347)
T 4fmz_A 309 ---GLTNLTTLFLSQNH-ITDIRPLASLSKMD-SADF 340 (347)
T ss_dssp ---TCTTCSEEECCSSS-CCCCGGGGGCTTCS-EESS
T ss_pred ---ccccCCEEEccCCc-cccccChhhhhccc-eeeh
Confidence 78999999999995 666655 78888 8765
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=1.9e-12 Score=137.42 Aligned_cols=181 Identities=17% Similarity=0.092 Sum_probs=125.9
Q ss_pred CccccC--CCccceEeecCCCCc-cccCcccccccCCCeeccCCCcccc--ccccccccC----------CCCC---cch
Q 040680 268 VPSSIS--KLKHLWYLNLPGNGI-TKLPNSVSKLLNLETPDCNGCRSLA--ELPRILEGC----------GHTD---VDV 329 (459)
Q Consensus 268 lp~~~~--~l~~L~~L~l~~~~i-~~lp~~i~~l~~L~~L~l~~~~~l~--~lp~~~~~~----------~~~~---~~~ 329 (459)
+|..++ ++++|++|++++|.+ ..+|..++++++|++|++++|+.+. .+|..+..+ .... ...
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 788877 999999999999874 4789899999999999999976344 578765432 1111 111
Q ss_pred HHHhh--ccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCC-cCEEeecCCCCCC
Q 040680 330 EALLD--DLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSS-LEYISILGCPELK 406 (459)
Q Consensus 330 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~ 406 (459)
..+|. .++.+++|+.|++++| ....+|.++.+++|+.|+++++. +..+|... . .+++ |+.|+|++| .+.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N--~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l-~---~l~~~L~~L~Ls~N-~L~ 632 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHN--KVRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF-C---AFTDQVEGLGFSHN-KLK 632 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTS--CCCBCCCCCTTSEESEEECCSSC-CSCCCTTS-C---EECTTCCEEECCSS-CCC
T ss_pred CccCChhhhhcCCCCCEEECCCC--CcccchhhcCCCcceEEECcCCc-cccchHHH-h---hccccCCEEECcCC-CCC
Confidence 35666 7889999999999998 33467789999999999999864 55666543 2 6777 999999986 466
Q ss_pred ccccccccCC---------CCCCc----CCCC----CCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 407 GWLRRIDNDA---------DGSKI----DMIE----PPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 407 ~~~~~~~~~~---------~~~~~----~~~~----~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+|..+.... +...+ ..++ ...+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~-~L~L 704 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPIS-TIIL 704 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCS-EEEC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCC-EEEC
Confidence 7765433210 01111 1111 113458888888888 5668886 57788 7765
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.32 E-value=1.1e-11 Score=117.79 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecC
Q 040680 360 LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISG 439 (459)
Q Consensus 360 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 439 (459)
+..+++|++|+++++ .+..++...+. .+++|+.|+|++| .+..+|..+. .+++|+.|++++
T Consensus 213 l~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp~~l~--------------~l~~L~~L~l~~ 273 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHN-QIRMIENGSLS---FLPTLRELHLDNN-KLSRVPAGLP--------------DLKLLQVVYLHT 273 (332)
T ss_dssp STTCTTCSCCBCCSS-CCCCCCTTGGG---GCTTCCEEECCSS-CCCBCCTTGG--------------GCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCC-cCCcCChhHhh---CCCCCCEEECCCC-cCeecChhhh--------------cCccCCEEECCC
Confidence 555555555555553 33333332222 4556666666653 4555555444 566777777777
Q ss_pred CCCCCCCCC
Q 040680 440 CPKLILIPL 448 (459)
Q Consensus 440 c~~l~~lP~ 448 (459)
| .++.+|.
T Consensus 274 N-~l~~~~~ 281 (332)
T 2ft3_A 274 N-NITKVGV 281 (332)
T ss_dssp S-CCCBCCT
T ss_pred C-CCCccCh
Confidence 6 4555553
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.32 E-value=1.4e-11 Score=117.09 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=100.4
Q ss_pred CccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccc-cccCC--------CCCcch-HHHhhccC
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRI-LEGCG--------HTDVDV-EALLDDLK 337 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~--------~~~~~~-~~~~~~l~ 337 (459)
.|..+.++++|++|++++|.++.+|..+. ++|++|++++|. +..+|.. +..+. ...... ...+..++
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 168 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence 36667778888888888887777776554 566666666654 3444332 22221 000000 11123334
Q ss_pred CCCC---------------------cceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCE
Q 040680 338 PHKN---------------------LRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEY 396 (459)
Q Consensus 338 ~l~~---------------------L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 396 (459)
.+++ |++|++++|.........++.+++|++|+++++ .+..++...+. .+++|+.
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~ 244 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA---NTPHLRE 244 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGG---GSTTCCE
T ss_pred CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhcc---CCCCCCE
Confidence 4444 555555544211111224888999999999986 46666654444 7889999
Q ss_pred EeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 397 ISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 397 L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
|+|++| .+..+|..+. .+++|++|++++| .++.+|.
T Consensus 245 L~L~~N-~l~~lp~~l~--------------~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 245 LHLNNN-KLVKVPGGLA--------------DHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp EECCSS-CCSSCCTTTT--------------TCSSCCEEECCSS-CCCCCCT
T ss_pred EECCCC-cCccCChhhc--------------cCCCcCEEECCCC-cCCccCh
Confidence 999996 6888887766 7999999999999 6888876
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=1e-11 Score=125.72 Aligned_cols=147 Identities=20% Similarity=0.181 Sum_probs=113.6
Q ss_pred CCCccceEeecCCCCccc-cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 273 SKLKHLWYLNLPGNGITK-LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
..+++|++|++++|.+.. +|..++++++|++|++++|. +..+| .++..++.+++|++|++++|.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~--------------~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELS--------------KIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHH--------------HHHHHHTTCTTCCEEECCSSC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccc--------------cchHHHhhCCCCCEEECCCCc
Confidence 678889999999999885 68889999999999999876 55443 245567888999999999993
Q ss_pred ccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCC
Q 040680 352 VRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSF 429 (459)
Q Consensus 352 ~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 429 (459)
.... +| .+..+++|++|++++|.-...++.. ..++|+.|+|++| ++..+|.... .+
T Consensus 386 l~~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~~L~~L~Ls~N-~l~~ip~~~~--------------~l 443 (520)
T 2z7x_B 386 VSYD-EKKGDCSWTKSLLSLNMSSNILTDTIFRC------LPPRIKVLDLHSN-KIKSIPKQVV--------------KL 443 (520)
T ss_dssp CBCC-GGGCSCCCCTTCCEEECCSSCCCGGGGGS------CCTTCCEEECCSS-CCCCCCGGGG--------------GC
T ss_pred CCcc-cccchhccCccCCEEECcCCCCCcchhhh------hcccCCEEECCCC-cccccchhhh--------------cC
Confidence 3221 34 3788999999999987533333322 1269999999996 6888888766 79
Q ss_pred CccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 430 PCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 430 ~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
++|++|++++| .++.+|. +++|+ .|.+
T Consensus 444 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~-~L~l 475 (520)
T 2z7x_B 444 EALQELNVASN-QLKSVPDGIFDRLTSLQ-KIWL 475 (520)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCC-EEEC
T ss_pred CCCCEEECCCC-cCCccCHHHhccCCccc-EEEC
Confidence 99999999999 6788886 56777 7765
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=122.10 Aligned_cols=148 Identities=17% Similarity=0.057 Sum_probs=83.7
Q ss_pred CCCccceEeecCCCCccccC-cccccccCCCeeccCCCccccc--cccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 273 SKLKHLWYLNLPGNGITKLP-NSVSKLLNLETPDCNGCRSLAE--LPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
..+++|++|++++|.+..+| ..++.+++|++|++++|+.... +|. ...++.+++|++|++++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------------~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA---------------ALCPHKFPAIQNLALRN 206 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT---------------TSCTTSSCCCCSCBCCS
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH---------------HHhhhcCCCCCEEECCC
Confidence 34556666666666655443 3555666666666666542111 111 11235667777777777
Q ss_pred ecccccCCCC-----CCCCCCCcEEecCCCcCccee-ccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCC
Q 040680 350 FGVRCQYIPQ-----LEQLPSLKSLTLSWLDALVYI-CFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDM 423 (459)
Q Consensus 350 ~~~~~~~l~~-----l~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 423 (459)
| ....++. ++.+++|++|+++++. +... |... .....+++|++|+|++| .+..+|..
T Consensus 207 N--~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~~~~~~~L~~L~Ls~N-~l~~lp~~------------ 269 (310)
T 4glp_A 207 T--GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-PRCMWSSALNSLNLSFA-GLEQVPKG------------ 269 (310)
T ss_dssp S--CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-SSCCCCTTCCCEECCSS-CCCSCCSC------------
T ss_pred C--CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-HhccCcCcCCEEECCCC-CCCchhhh------------
Confidence 7 2233232 3456777777777653 4433 3222 22223367777777774 56665543
Q ss_pred CCCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 424 IEPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 424 ~~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 270 ----~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~-~L~L 301 (310)
T 4glp_A 270 ----LPAKLRVLDLSSN-RLNRAPQPDELPEVD-NLTL 301 (310)
T ss_dssp ----CCSCCSCEECCSC-CCCSCCCTTSCCCCS-CEEC
T ss_pred ----hcCCCCEEECCCC-cCCCCchhhhCCCcc-EEEC
Confidence 3468888888888 5666664 77777 7765
No 72
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.32 E-value=4.4e-12 Score=130.88 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=118.7
Q ss_pred ccCCCccceEeecCCCCcccc---CcccccccCCCeeccCCCccccccccccccCCCCC---cc---hHH-Hh-hccCCC
Q 040680 271 SISKLKHLWYLNLPGNGITKL---PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTD---VD---VEA-LL-DDLKPH 339 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~~---~~~-~~-~~l~~l 339 (459)
.+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..+..+.-.. .. ... .+ ..++.+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 567899999999999998866 7889999999999999976 777886665443111 11 112 22 467888
Q ss_pred CCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc-cccccCCCC
Q 040680 340 KNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL-RRIDNDADG 418 (459)
Q Consensus 340 ~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~ 418 (459)
++|++|++++|.........++.+++|++|++++|.-...+....+. .+++|+.|+|++| .+..++ ..+.
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~~~----- 494 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---NTTNLTFLDLSKC-QLEQISWGVFD----- 494 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTS-CCCEECTTTTT-----
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---cCCCCCEEECCCC-cCCccChhhhc-----
Confidence 89999999888333223334888899999999886433322232333 7889999999986 455553 3344
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCCCC-CC----CCCCccceee
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLILI-PL----YPYLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l-P~----l~~L~~~L~i 458 (459)
.+++|++|++++|+ +..+ |. +++|+ .|.+
T Consensus 495 ---------~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~-~L~l 528 (606)
T 3vq2_A 495 ---------TLHRLQLLNMSHNN-LLFLDSSHYNQLYSLS-TLDC 528 (606)
T ss_dssp ---------TCTTCCEEECCSSC-CSCEEGGGTTTCTTCC-EEEC
T ss_pred ---------ccccCCEEECCCCc-CCCcCHHHccCCCcCC-EEEC
Confidence 78999999999995 5544 54 77788 7775
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.31 E-value=1.6e-11 Score=121.88 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=75.8
Q ss_pred ccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCC---Cc---chHHHhhccCCCCCcce
Q 040680 271 SISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHT---DV---DVEALLDDLKPHKNLRE 344 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~---~~---~~~~~~~~l~~l~~L~~ 344 (459)
.++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| +..+... .. ....+ .++.+++|++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~l~~l--~~~~l~~L~~ 131 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKL--DVSQNPLLTY 131 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCCE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCcCCee--cCCCCCcCCE
Confidence 4666677777777777776665 6677777777777654 44443 2111000 00 00000 1333444444
Q ss_pred EeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCC
Q 040680 345 LSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMI 424 (459)
Q Consensus 345 L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (459)
|++++| ....++ ++.+++|++|++++|..+..++ + ..+++|+.|++++| ++..++
T Consensus 132 L~l~~N--~l~~l~-l~~l~~L~~L~l~~n~~~~~~~---~---~~l~~L~~L~ls~n-~l~~l~--------------- 186 (457)
T 3bz5_A 132 LNCARN--TLTEID-VSHNTQLTELDCHLNKKITKLD---V---TPQTQLTTLDCSFN-KITELD--------------- 186 (457)
T ss_dssp EECTTS--CCSCCC-CTTCTTCCEEECTTCSCCCCCC---C---TTCTTCCEEECCSS-CCCCCC---------------
T ss_pred EECCCC--ccceec-cccCCcCCEEECCCCCcccccc---c---ccCCcCCEEECCCC-ccceec---------------
Confidence 444444 111121 4444444444444443333221 1 14455555555553 344433
Q ss_pred CCCCCCccceeeecCCCCCCCCCC--CCCCccceee
Q 040680 425 EPPSFPCLSELDISGCPKLILIPL--YPYLETDWRI 458 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~c~~l~~lP~--l~~L~~~L~i 458 (459)
...+++|+.|++++| .+..+|- +++|+ .|.+
T Consensus 187 -l~~l~~L~~L~l~~N-~l~~~~l~~l~~L~-~L~L 219 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTN-NITKLDLNQNIQLT-FLDC 219 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCCCCTTCTTCS-EEEC
T ss_pred -cccCCCCCEEECcCC-cCCeeccccCCCCC-EEEC
Confidence 126777888888777 4665543 66777 6655
No 74
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=5.9e-12 Score=128.92 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=108.5
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
+..+.+|++|++++|.+..+| .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~------------------l~~l~~L~~L~Ls~N- 97 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP------------------LTNLKNLGWLFLDEN- 97 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG------------------GGGCTTCCEEECCSS-
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh------------------hccCCCCCEEECcCC-
Confidence 457888999999999999887 59999999999999976 666652 456799999999999
Q ss_pred ccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc-------CCCCCCcCCC
Q 040680 352 VRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN-------DADGSKIDMI 424 (459)
Q Consensus 352 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-------~~~~~~~~~~ 424 (459)
....+|.++.+++|+.|+|++| .+..++. +. .+++|+.|+|++| .+..++ .+.. ..++..+..+
T Consensus 98 -~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~--l~---~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 98 -KIKDLSSLKDLKKLKSLSLEHN-GISDING--LV---HLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp -CCCCCTTSTTCTTCCEEECTTS-CCCCCGG--GG---GCTTCSEEECCSS-CCCCCG-GGGSCTTCSEEECCSSCCCCC
T ss_pred -CCCCChhhccCCCCCEEEecCC-CCCCCcc--cc---CCCccCEEECCCC-ccCCch-hhcccCCCCEEECcCCcCCCc
Confidence 5566788999999999999986 4554432 12 6777888887775 344442 1110 0011111111
Q ss_pred -CCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 425 -EPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 425 -~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
+...+++|+.|+|++| .+..+|. +++|+ .|.+
T Consensus 169 ~~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~-~L~L 204 (605)
T 1m9s_A 169 VPLAGLTKLQNLYLSKN-HISDLRALAGLKNLD-VLEL 204 (605)
T ss_dssp GGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCS-EEEC
T ss_pred hhhccCCCCCEEECcCC-CCCCChHHccCCCCC-EEEc
Confidence 1226777888888777 5666665 66666 6654
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.31 E-value=1.6e-11 Score=126.60 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=65.7
Q ss_pred cccCCCccceEeecCCCCccccCcccccccCCCeeccCCCcccccc-ccccccCCCC---Ccch----HHHh-hccCCCC
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAEL-PRILEGCGHT---DVDV----EALL-DDLKPHK 340 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~---~~~~----~~~~-~~l~~l~ 340 (459)
..|..+++|++|++++|.++.+|..++++++|++|++++|. +..+ |..+..+... .... ..++ ..++.++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 34677777777777777777777777777777777777765 3333 3333332100 0000 1121 1255556
Q ss_pred CcceEeeeeecccccC--CCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 341 NLRELSIFYFGVRCQY--IPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 341 ~L~~L~l~~~~~~~~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
+|++|++++|...... ...++.+++|++|+++++. +..++...+. .+++|+.|++++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n 410 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFK---ECPQLELLDLAFT 410 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTT---TCTTCSEEECTTC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhc---CCccCCeEECCCC
Confidence 6666666655211111 1235555666666665542 3333222222 4455555555543
No 76
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.31 E-value=1.2e-11 Score=123.00 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=60.4
Q ss_pred hccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-cccc
Q 040680 334 DDLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRI 412 (459)
Q Consensus 334 ~~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~ 412 (459)
..++.+++|++|++++|.........|+.+++|++|+++++ .++.++...+. .+++|+.|+|++| .+..+ |..+
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~~ 367 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFE---NLDKLEVLDLSYN-HIRALGDQSF 367 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGT---TCTTCCEEECCSS-CCCEECTTTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhc---CcccCCEEECCCC-cccccChhhc
Confidence 34555566666666665222111123666666666666664 34444333333 5666777777764 34444 3333
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
. .+++|++|++++| .++.+|. +++|+ .|.+
T Consensus 368 ~--------------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~-~L~l 402 (455)
T 3v47_A 368 L--------------GLPNLKELALDTN-QLKSVPDGIFDRLTSLQ-KIWL 402 (455)
T ss_dssp T--------------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred c--------------ccccccEEECCCC-ccccCCHhHhccCCccc-EEEc
Confidence 3 6788888888888 5777775 56777 7765
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=3.2e-11 Score=106.50 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=108.9
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
+.++.+++.+..+|..+ .++|++|++++|. +..+|.. .++.+++|++|++++| ....++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~----------------~~~~l~~L~~L~l~~n--~l~~~~ 68 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNG----------------VFDELTSLTQLYLGGN--KLQSLP 68 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTT----------------TTTTCTTCSEEECCSS--CCCCCC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChh----------------hhcccccCcEEECCCC--ccCccC
Confidence 56788888899999765 4699999999975 6677643 4677899999999999 344555
Q ss_pred C--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceee
Q 040680 359 Q--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELD 436 (459)
Q Consensus 359 ~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 436 (459)
. |+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ .+..++..... .+++|+.|+
T Consensus 69 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~-------------~l~~L~~L~ 130 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTN-QLQSLPNGVFD---KLTQLKELALNTN-QLQSLPDGVFD-------------KLTQLKDLR 130 (208)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTT-------------TCTTCCEEE
T ss_pred hhhcCCCCCcCEEECCCC-cCCccCHhHhc---CccCCCEEEcCCC-cCcccCHhHhc-------------cCCcCCEEE
Confidence 4 789999999999986 57677665444 7899999999985 67777654321 789999999
Q ss_pred ecCCCCCCCCCC-----CCCCccceee
Q 040680 437 ISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 437 l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
+++| .+..+|. +++|+ .|.+
T Consensus 131 l~~N-~l~~~~~~~~~~l~~L~-~L~l 155 (208)
T 2o6s_A 131 LYQN-QLKSVPDGVFDRLTSLQ-YIWL 155 (208)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred CCCC-ccceeCHHHhccCCCcc-EEEe
Confidence 9999 6777776 67788 7765
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.30 E-value=6.7e-12 Score=128.44 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=61.6
Q ss_pred ccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCc-ceeccccCcCCCCCCCcCEEeecCCCCCCcc-cccc
Q 040680 335 DLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDAL-VYICFSSIASRTRFSSLEYISILGCPELKGW-LRRI 412 (459)
Q Consensus 335 ~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~ 412 (459)
.+..+++|++|++++|.........++.+++|++|++++|.-. ..+|..+ . .+++|+.|+|++| .+..+ |..+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~---~l~~L~~L~l~~n-~l~~~~~~~~ 490 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-T---ELRNLTFLDLSQC-QLEQLSPTAF 490 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-T---TCTTCCEEECTTS-CCCEECTTTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh-h---cccCCCEEECCCC-ccccCChhhh
Confidence 4566677777777777322222223677777777777776422 2344222 2 6777777777775 35444 3333
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
. .+++|++|++++| .+..+|. +++|+ .|.+
T Consensus 491 ~--------------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l 525 (570)
T 2z63_A 491 N--------------SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQ-KIWL 525 (570)
T ss_dssp T--------------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCC-EEEC
T ss_pred h--------------cccCCCEEeCCCC-cCCCCCHHHhhcccCCc-EEEe
Confidence 3 5677777777777 4555554 55666 6654
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.29 E-value=2.7e-11 Score=123.81 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=114.0
Q ss_pred CCCccceEeecCCCCccc-cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 273 SKLKHLWYLNLPGNGITK-LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
..+++|++|++++|.+.. +|..++++++|++|++++|. +..+| .++..++.+++|++|++++|.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--------------~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFF--------------KVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTT--------------HHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcc--------------cchhhhcCCCCCCEEECCCCc
Confidence 678899999999999885 68889999999999999965 66655 235567888999999999993
Q ss_pred ccccCCC-CCCCCCCCcEEecCCCcCcceeccccCcCCCCC-CCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCC
Q 040680 352 VRCQYIP-QLEQLPSLKSLTLSWLDALVYICFSSIASRTRF-SSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSF 429 (459)
Q Consensus 352 ~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 429 (459)
......+ .+..+++|++|+++++.-...++. .+ ++|+.|+|++| ++..+|.... .+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~~L~~L~L~~N-~l~~ip~~~~--------------~l 472 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNN-RIMSIPKDVT--------------HL 472 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-------SCCTTCSEEECCSS-CCCCCCTTTT--------------SS
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhh-------hhcCcCCEEECCCC-cCcccChhhc--------------CC
Confidence 3221222 288899999999998743232222 23 69999999996 7888887766 78
Q ss_pred CccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 430 PCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 430 ~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 473 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~-~L~l 504 (562)
T 3a79_B 473 QALQELNVASN-QLKSVPDGVFDRLTSLQ-YIWL 504 (562)
T ss_dssp CCCSEEECCSS-CCCCCCTTSTTTCTTCC-CEEC
T ss_pred CCCCEEECCCC-CCCCCCHHHHhcCCCCC-EEEe
Confidence 99999999999 6888886 66777 7765
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.29 E-value=1.1e-11 Score=118.87 Aligned_cols=185 Identities=13% Similarity=0.055 Sum_probs=121.3
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccc-cccCCCCC----c--c-hHHH-hh
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRI-LEGCGHTD----V--D-VEAL-LD 334 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~----~--~-~~~~-~~ 334 (459)
+..+|..+ ..++++|+|++|.|+.+|. .|.++++|++|++++|..++.+|.. |.++.... . + ...+ +.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 55677766 3678999999999999987 5899999999999998766767753 44443111 0 1 1233 46
Q ss_pred ccCCCCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccc
Q 040680 335 DLKPHKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRI 412 (459)
Q Consensus 335 ~l~~l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 412 (459)
.++.+++|++|++++| ....+|. +....++..|++.++..+..++...+.. ....|+.|+|++ +++++++...
T Consensus 99 ~f~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~--~~~~l~~L~L~~-N~i~~i~~~~ 173 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT--GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG--LSFESVILWLNK-NGIQEIHNSA 173 (350)
T ss_dssp SBCCCTTCCEEEEEEE--CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT--SBSSCEEEECCS-SCCCEECTTS
T ss_pred hhhhcccccccccccc--ccccCCchhhcccchhhhhhhccccccccccccchhh--cchhhhhhcccc-ccccCCChhh
Confidence 7889999999999999 3444443 3444566677776666666666543321 123466666665 3455554432
Q ss_pred cc--------CCCCCCcCCCCCC---CCCccceeeecCCCCCCCCCC--CCCCccceee
Q 040680 413 DN--------DADGSKIDMIEPP---SFPCLSELDISGCPKLILIPL--YPYLETDWRI 458 (459)
Q Consensus 413 ~~--------~~~~~~~~~~~~~---~l~~L~~L~l~~c~~l~~lP~--l~~L~~~L~i 458 (459)
.. ......+..++.. .+++|+.|++++| +++.+|. +.+|+ .|++
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~-~L~~ 230 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLK-KLRA 230 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCC-EEEC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccch-Hhhh
Confidence 21 1113334444442 6789999999999 7999998 77777 7653
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=1.5e-11 Score=122.17 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=95.0
Q ss_pred ccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCC---CCCc---chHHHhhccCCCCCc
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCG---HTDV---DVEALLDDLKPHKNL 342 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~---~~~~---~~~~~~~~l~~l~~L 342 (459)
+..++++++|++|++++|.+..+| +++.+++|++|++++|. +..+| +..+. .... ....+ .++.+++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTNL--DVTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCC--CCTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCcee--ecCCCCcC
Confidence 446788999999999999999987 79999999999999976 66665 32221 0000 00111 14455555
Q ss_pred ceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcC
Q 040680 343 RELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKID 422 (459)
Q Consensus 343 ~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 422 (459)
++|++++| ....+| ++.+++|++|+++++ .++.++ ...+++|+.|++++|..+..++ +
T Consensus 109 ~~L~L~~N--~l~~l~-~~~l~~L~~L~l~~N-~l~~l~------l~~l~~L~~L~l~~n~~~~~~~--~---------- 166 (457)
T 3bz5_A 109 TYLNCDTN--KLTKLD-VSQNPLLTYLNCARN-TLTEID------VSHNTQLTELDCHLNKKITKLD--V---------- 166 (457)
T ss_dssp CEEECCSS--CCSCCC-CTTCTTCCEEECTTS-CCSCCC------CTTCTTCCEEECTTCSCCCCCC--C----------
T ss_pred CEEECCCC--cCCeec-CCCCCcCCEEECCCC-ccceec------cccCCcCCEEECCCCCcccccc--c----------
Confidence 55555555 222232 555555555555553 233321 1145556666666554444442 1
Q ss_pred CCCCCCCCccceeeecCCCCCCCCCC--CCCCccceee
Q 040680 423 MIEPPSFPCLSELDISGCPKLILIPL--YPYLETDWRI 458 (459)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l~~lP~--l~~L~~~L~i 458 (459)
..+++|+.|++++| .++.+|- +++|+ .|.+
T Consensus 167 ----~~l~~L~~L~ls~n-~l~~l~l~~l~~L~-~L~l 198 (457)
T 3bz5_A 167 ----TPQTQLTTLDCSFN-KITELDVSQNKLLN-RLNC 198 (457)
T ss_dssp ----TTCTTCCEEECCSS-CCCCCCCTTCTTCC-EEEC
T ss_pred ----ccCCcCCEEECCCC-ccceeccccCCCCC-EEEC
Confidence 26788888888888 6777775 66777 7654
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.29 E-value=8.5e-12 Score=127.12 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=109.9
Q ss_pred cccCccccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .+|++|++++|.++.+ |..|+++++|++|++++|. +..+|. ..++.+++|+
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~----------------~~~~~l~~L~ 77 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEG----------------DAFYSLGSLE 77 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECT----------------TTTTTCTTCC
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccCh----------------hhccccccCC
Confidence 556777654 7899999999999977 5689999999999999976 666653 3567789999
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceecc-ccCcCCCCCCCcCEEeecCCCCCCcccc-ccccCCCCC
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICF-SSIASRTRFSSLEYISILGCPELKGWLR-RIDNDADGS 419 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~ 419 (459)
+|++++| ....++. ++++++|++|+++++ .++.++. ..+ ..+++|++|++++|..+..++. .+.
T Consensus 78 ~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~~l~~L~~L~L~~n~~~~~~~~~~~~------ 145 (549)
T 2z81_A 78 HLDLSDN--HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLF---PNLTNLQTLRIGNVETFSEIRRIDFA------ 145 (549)
T ss_dssp EEECTTS--CCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSC---TTCTTCCEEEEEESSSCCEECTTTTT------
T ss_pred EEECCCC--ccCccCHHHhccCCCCcEEECCCC-cccccchhhhh---hccCCccEEECCCCccccccCHhhhh------
Confidence 9999999 4444443 899999999999986 4543321 222 3789999999999876777764 333
Q ss_pred CcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 420 KIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
.+++|++|++++|..-..+|.
T Consensus 146 --------~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 146 --------GLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp --------TCCEEEEEEEEETTCCEECTT
T ss_pred --------cccccCeeeccCCcccccChh
Confidence 678888888888854433454
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=9.3e-12 Score=114.23 Aligned_cols=135 Identities=22% Similarity=0.253 Sum_probs=106.8
Q ss_pred ccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceE
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLREL 345 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 345 (459)
..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|. +..+|.. .. ++|++|
T Consensus 54 ~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~------------------~~-~~L~~L 111 (263)
T 1xeu_A 54 QSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGI------------------PS-ACLSRL 111 (263)
T ss_dssp CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC------------------CC-SSCCEE
T ss_pred ccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcc------------------cc-CcccEE
Confidence 3444 67889999999999999999988 9999999999999975 7777632 23 899999
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
++++| ....++.++.+++|+.|+++++ .++.++. +. .+++|+.|++++| .+..+ ....
T Consensus 112 ~L~~N--~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~~--l~---~l~~L~~L~L~~N-~i~~~-~~l~------------ 169 (263)
T 1xeu_A 112 FLDNN--ELRDTDSLIHLKNLEILSIRNN-KLKSIVM--LG---FLSKLEVLDLHGN-EITNT-GGLT------------ 169 (263)
T ss_dssp ECCSS--CCSBSGGGTTCTTCCEEECTTS-CCCBCGG--GG---GCTTCCEEECTTS-CCCBC-TTST------------
T ss_pred EccCC--ccCCChhhcCcccccEEECCCC-cCCCChH--Hc---cCCCCCEEECCCC-cCcch-HHhc------------
Confidence 99999 4555677999999999999986 4666642 22 7889999999995 56666 3333
Q ss_pred CCCCCccceeeecCCCCCCCCC
Q 040680 426 PPSFPCLSELDISGCPKLILIP 447 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~lP 447 (459)
.+++|+.|++++|+ +...|
T Consensus 170 --~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 170 --RLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp --TCCCCCEEEEEEEE-EECCC
T ss_pred --cCCCCCEEeCCCCc-ccCCc
Confidence 78999999999984 44444
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.28 E-value=2.5e-11 Score=125.18 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=116.0
Q ss_pred cceEeecCCCCccccCcc-cccccCCCeeccCCCccccccccccccCCCCC---c---ch-HHHhhccCCCCCcceEeee
Q 040680 277 HLWYLNLPGNGITKLPNS-VSKLLNLETPDCNGCRSLAELPRILEGCGHTD---V---DV-EALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 277 ~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~---~~-~~~~~~l~~l~~L~~L~l~ 348 (459)
+|++|++++|.+..+|.. ++++++|++|++++|. +..+|..+..+.-.. . .. ...+..++.+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 799999999999988764 9999999999999975 789998775553111 1 11 2235678888999999999
Q ss_pred eecccccCCCC-CCCCCCCcEEecCCCcCcceec--cccCcCCCCCCCcCEEeecCCCCCCccc-ccccc-------CCC
Q 040680 349 YFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYIC--FSSIASRTRFSSLEYISILGCPELKGWL-RRIDN-------DAD 417 (459)
Q Consensus 349 ~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~-------~~~ 417 (459)
+|.......+. ++.+++|++|+++++. +..+. ...+ ..+++|+.|++++|. +..++ ..+.. ...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQL---RNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTT---TTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECT
T ss_pred CCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhc---ccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECC
Confidence 98433333343 8899999999999864 44443 2222 378999999999863 43332 22221 011
Q ss_pred CCCcCCC-C---CCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 418 GSKIDMI-E---PPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 418 ~~~~~~~-~---~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
+..+... + ...+++|+.|++++|......|. +++|+ .|.+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L 456 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ-HLNL 456 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC-EEEC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC-EEEC
Confidence 1222111 1 12577888888888854333343 67777 7765
No 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.28 E-value=5.8e-11 Score=113.61 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=105.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc------cHHHHHHHHHHHhcc----------------c
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF------YHKAMLEKIIAFVAY----------------R 63 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~----------------~ 63 (459)
+++.|+|++|+|||+|++++++. . .++|+++.... +...+.+.+.+.+.. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE--R-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH--S-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHH--c-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 68999999999999999999973 2 17788765432 445556666555432 0
Q ss_pred c--CCccCHHHHHHHHHhhcCC-ceEEEEEeCCCCCCh-------hhHHHHHHhhccCCCCcEEEEeecchhh-------
Q 040680 64 E--FSKHDLNKLQEVHHQKIDR-KKYLLVLDDVWIENC-------DEWLKLETLLRNSAGGSNIIVATRSERV------- 126 (459)
Q Consensus 64 ~--~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~-------~~~~~l~~~l~~~~~gs~iiiTtr~~~~------- 126 (459)
. ....+..+..+.+.+..+. ++++||+||++..+. ..+..+...... ..+.++|+|++...+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~ 183 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKI 183 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhh
Confidence 0 0123455566666554432 389999999976421 223333333332 257789999876421
Q ss_pred -------h-c--------cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 040680 127 -------A-R--------GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL 180 (459)
Q Consensus 127 -------~-~--------~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 180 (459)
. . +|+.+|+.+++.......+... ..+.+..+++.++|+|+++..++..+
T Consensus 184 ~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~----~~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 184 TDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV----PENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp TCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 0 0 8999999999987643222211 13467899999999999999988654
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=2.9e-11 Score=107.75 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=107.1
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
+.++++++.++.+|..+. ..+++|++++|. +..++.. ..++.+++|++|++++|. ...++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~---------------~~~~~l~~L~~L~L~~N~--i~~i~ 73 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEAT---------------GIFKKLPQLRKINFSNNK--ITDIE 73 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCC---------------CCGGGCTTCCEEECCSSC--CCEEC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCch---------------hhhccCCCCCEEECCCCc--CCEEC
Confidence 589999999999998764 457899999976 6666421 135667999999999993 33333
Q ss_pred --CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc-cccccCCCCCCcCCCCCCCCCcccee
Q 040680 359 --QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL-RRIDNDADGSKIDMIEPPSFPCLSEL 435 (459)
Q Consensus 359 --~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L 435 (459)
.|+.+++|++|+++++ .++.++...+. .+++|++|+|+++ ++..++ ..+. .+++|+.|
T Consensus 74 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~--------------~l~~L~~L 134 (220)
T 2v70_A 74 EGAFEGASGVNEILLTSN-RLENVQHKMFK---GLESLKTLMLRSN-RITCVGNDSFI--------------GLSSVRLL 134 (220)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCGGGGT---TCSSCCEEECTTS-CCCCBCTTSST--------------TCTTCSEE
T ss_pred HHHhCCCCCCCEEECCCC-ccCccCHhHhc---CCcCCCEEECCCC-cCCeECHhHcC--------------CCccCCEE
Confidence 4999999999999985 56777665554 7899999999995 577664 3344 78999999
Q ss_pred eecCCCCCCCC-CC----CCCCccceee
Q 040680 436 DISGCPKLILI-PL----YPYLETDWRI 458 (459)
Q Consensus 436 ~l~~c~~l~~l-P~----l~~L~~~L~i 458 (459)
++++| .+..+ |. +++|+ .|.+
T Consensus 135 ~L~~N-~l~~~~~~~~~~l~~L~-~L~L 160 (220)
T 2v70_A 135 SLYDN-QITTVAPGAFDTLHSLS-TLNL 160 (220)
T ss_dssp ECTTS-CCCCBCTTTTTTCTTCC-EEEC
T ss_pred ECCCC-cCCEECHHHhcCCCCCC-EEEe
Confidence 99999 56666 43 77788 7765
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.28 E-value=2.9e-11 Score=119.96 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=88.1
Q ss_pred ccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcc---hHHHhhccCCCCCcceEeeeeecc
Q 040680 276 KHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVD---VEALLDDLKPHKNLRELSIFYFGV 352 (459)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~ 352 (459)
.+|++|++++|.++.+| +++++++|++|++++|. +..+|..+..+...... ...++ .++.+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-- 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-- 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS--
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCC--
Confidence 57888888888888888 58888888888888865 66677554332211111 11222 4666677777777766
Q ss_pred cccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCcc
Q 040680 353 RCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCL 432 (459)
Q Consensus 353 ~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 432 (459)
....+|.+ .++|++|++++| .+..+|. ++ .+++|+.|++++| ++..+|. .+++|
T Consensus 206 ~l~~l~~~--~~~L~~L~l~~n-~l~~lp~--~~---~l~~L~~L~l~~N-~l~~l~~-----------------~~~~L 259 (454)
T 1jl5_A 206 SLKKLPDL--PLSLESIVAGNN-ILEELPE--LQ---NLPFLTTIYADNN-LLKTLPD-----------------LPPSL 259 (454)
T ss_dssp CCSSCCCC--CTTCCEEECCSS-CCSSCCC--CT---TCTTCCEEECCSS-CCSSCCS-----------------CCTTC
T ss_pred cCCcCCCC--cCcccEEECcCC-cCCcccc--cC---CCCCCCEEECCCC-cCCcccc-----------------ccccc
Confidence 33334432 246777777765 3445542 22 6777777777774 4555443 23455
Q ss_pred ceeeecCCCCCCCCCC-CCCCccceee
Q 040680 433 SELDISGCPKLILIPL-YPYLETDWRI 458 (459)
Q Consensus 433 ~~L~l~~c~~l~~lP~-l~~L~~~L~i 458 (459)
+.|++++| .+..+|. +++|+ .|.+
T Consensus 260 ~~L~l~~N-~l~~l~~~~~~L~-~L~l 284 (454)
T 1jl5_A 260 EALNVRDN-YLTDLPELPQSLT-FLDV 284 (454)
T ss_dssp CEEECCSS-CCSCCCCCCTTCC-EEEC
T ss_pred CEEECCCC-cccccCcccCcCC-EEEC
Confidence 55555555 3444555 34455 4443
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=3.2e-11 Score=118.28 Aligned_cols=216 Identities=9% Similarity=0.017 Sum_probs=125.3
Q ss_pred cCeeEEe--ecCCCCcHHHHHHHHhCCccccc-----CCC-eEEEEEeCCcccHHHHHHHHHHHhccccC-CccCHHHHH
Q 040680 4 IERFFLS--MEIGGLGKTAVTQLVYNDETVKN-----HFD-LRIWMCISDIFYHKAMLEKIIAFVAYREF-SKHDLNKLQ 74 (459)
Q Consensus 4 ~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~~-----~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~ 74 (459)
..+.+.| +|++|+|||+||+++++ .... .+. .++|+++....+...++..++..++.... ...+.....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 126 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDIL 126 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 4567777 99999999999999998 3332 122 46788876666788889999998865422 123344555
Q ss_pred HHHHhhcC--CceEEEEEeCCCCCC------hhhHHHHHHhhccC---C--CCcEEEEeecchhh----h----------
Q 040680 75 EVHHQKID--RKKYLLVLDDVWIEN------CDEWLKLETLLRNS---A--GGSNIIVATRSERV----A---------- 127 (459)
Q Consensus 75 ~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~iiiTtr~~~~----~---------- 127 (459)
..+.+.+. +++++||+||++... ...+..+...+... + ....+|+||+...+ .
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~ 206 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 206 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc
Confidence 55555554 679999999996521 12233333333222 2 44558878875431 1
Q ss_pred ------ccCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcC------CChHHHHHHhhh-hh--c--cc---chh
Q 040680 128 ------RGLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCV------GVPLAIRTVGRL-LY--C--NK---IEA 187 (459)
Q Consensus 128 ------~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------glPLai~~~~~~-l~--~--~~---~~~ 187 (459)
.+++.++++++|...+....... .-..+.+..+++.++ |.|..+..+... .. . .. +.+
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~ 284 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 18999999999976543111100 112356778888898 999655444322 11 1 11 111
Q ss_pred hhHhHhhhhhhhhhhcCCchhhHHHHhhccCchhHHHHHhhhhcc
Q 040680 188 YWLPFRQEELSKIKQEGNHILPILELSYNHIPSHLHQCFSYCVLF 232 (459)
Q Consensus 188 ~w~~~~~~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~l~~~ 232 (459)
.+...... ... ...+.-.+..+|...+.++..++.+
T Consensus 285 ~v~~~~~~----~~~-----~~~~~~~l~~l~~~~~~~l~aia~l 320 (412)
T 1w5s_A 285 LVRKAVSE----NEA-----ASIQTHELEALSIHELIILRLIAEA 320 (412)
T ss_dssp HHHHHHHH----C-----------CCSSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----Hhc-----cchHHHHHHcCCHHHHHHHHHHHHH
Confidence 12111111 000 1223445677888888888777654
No 89
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=4.3e-11 Score=119.36 Aligned_cols=156 Identities=18% Similarity=0.247 Sum_probs=85.9
Q ss_pred cCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCC---cch---HHHhhccCCCCCcceE
Q 040680 272 ISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTD---VDV---EALLDDLKPHKNLREL 345 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~---~~~---~~~~~~l~~l~~L~~L 345 (459)
+.++++|++|++++|.+..++. ++++++|++|++++|. +..+|. +..+.... ... ..+ ..++.+++|++|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEe
Confidence 6777777777777777777666 7777777777777754 555552 21111000 000 000 123344444444
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
++.++ ...++.++.+++|+.|+++++. +..++. + ..+++|+.|++++| .+..++. ..
T Consensus 162 ~l~~~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-~~------------ 218 (466)
T 1o6v_A 162 SFGNQ---VTDLKPLANLTTLERLDISSNK-VSDISV--L---AKLTNLESLIATNN-QISDITP-LG------------ 218 (466)
T ss_dssp EEEES---CCCCGGGTTCTTCCEEECCSSC-CCCCGG--G---GGCTTCSEEECCSS-CCCCCGG-GG------------
T ss_pred ecCCc---ccCchhhccCCCCCEEECcCCc-CCCChh--h---ccCCCCCEEEecCC-ccccccc-cc------------
Confidence 44322 1222335555666666666542 333321 1 15566666666664 3433332 22
Q ss_pred CCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 426 PPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|++|++++| .+..+|. +++|+ .|.+
T Consensus 219 --~l~~L~~L~l~~n-~l~~~~~l~~l~~L~-~L~l 250 (466)
T 1o6v_A 219 --ILTNLDELSLNGN-QLKDIGTLASLTNLT-DLDL 250 (466)
T ss_dssp --GCTTCCEEECCSS-CCCCCGGGGGCTTCS-EEEC
T ss_pred --ccCCCCEEECCCC-CcccchhhhcCCCCC-EEEC
Confidence 6788999999888 5676665 77777 7765
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.5e-11 Score=118.48 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=107.4
Q ss_pred cccC-CCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEee
Q 040680 270 SSIS-KLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSI 347 (459)
Q Consensus 270 ~~~~-~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 347 (459)
..+. ++.+|++|++++|.+..++. .|.++++|++|++++|. +..+|.. .+..+++|++|++
T Consensus 57 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------------~~~~l~~L~~L~L 119 (361)
T 2xot_A 57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEF----------------LFSDLQALEVLLL 119 (361)
T ss_dssp TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTT----------------TTTTCTTCCEEEC
T ss_pred hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHH----------------HhCCCcCCCEEEC
Confidence 3455 89999999999999998875 69999999999999976 7777643 5677899999999
Q ss_pred eeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCC
Q 040680 348 FYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPP 427 (459)
Q Consensus 348 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
++|.........|..+++|+.|+|+++ .+..++...+.....+++|+.|+|++ +++..++.....
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~------------- 184 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQ------------- 184 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHH-------------
T ss_pred CCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhh-------------
Confidence 999332222234899999999999985 67778776653334789999999999 478887744221
Q ss_pred CCCc--cceeeecCCC
Q 040680 428 SFPC--LSELDISGCP 441 (459)
Q Consensus 428 ~l~~--L~~L~l~~c~ 441 (459)
.+++ |+.|++++|+
T Consensus 185 ~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HSCHHHHTTEECCSSC
T ss_pred hccHhhcceEEecCCC
Confidence 5666 4889999875
No 91
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=5.8e-11 Score=103.47 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=73.7
Q ss_pred cccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
+..+|..+. .+|++|++++|.++.+|..+.++++|++|++++|. +..++.. .+..+++|++
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~----------------~f~~l~~L~~ 82 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQ----------------SFSNMTQLLT 82 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTT----------------TTTTCTTCCE
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHh----------------HccCCCCCCE
Confidence 445555443 46777777777777777777777777777777754 5555532 4566677777
Q ss_pred EeeeeecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 345 LSIFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 345 L~l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
|++++| ....++ .|..+++|+.|+++++ .++.++...+. .+++|+.|+|+++
T Consensus 83 L~Ls~N--~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N 136 (193)
T 2wfh_A 83 LILSYN--RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFN---DLSALSHLAIGAN 136 (193)
T ss_dssp EECCSS--CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT---TCTTCCEEECCSS
T ss_pred EECCCC--ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhh---cCccccEEEeCCC
Confidence 777777 333333 3777777777777764 46666554443 5677777777764
No 92
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=3.1e-11 Score=119.93 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=60.0
Q ss_pred ccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccc
Q 040680 276 KHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRC 354 (459)
Q Consensus 276 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (459)
++|++|++++|.++.+ |..|+++++|++|++++|.....+|.. .++.+++|++|++++|....
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~----------------~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN----------------TFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT----------------TTTTCTTCCEEECTTCTTCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc----------------cccccccCCEEeCCCCccCc
Confidence 5677777777777765 556777777777777776543344422 34455666666666662211
Q ss_pred cCCCCCCCCCCCcEEecCCCcCcceeccc-cCcCCCCCCCcCEEeecCC
Q 040680 355 QYIPQLEQLPSLKSLTLSWLDALVYICFS-SIASRTRFSSLEYISILGC 402 (459)
Q Consensus 355 ~~l~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~L~~~ 402 (459)
.....|+++++|++|++++|.-...++.. .+. .+++|+.|+|++|
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~l~~L~~L~L~~n 139 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK---PLTSLEMLVLRDN 139 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT---TCTTCCEEECCSS
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCccccc---CcccCCEEECCCC
Confidence 11223666666666666654322112211 122 4556666666664
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=3.5e-11 Score=125.88 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=93.3
Q ss_pred ccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 271 SISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
.|.++++|++|++++|.+..+ |..++++++|++|++++|. +..+|.. .++.+++|++|++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~----------------~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDK----------------TFAFCTNLTELHLMS 106 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTT----------------TTTTCTTCSEEECCS
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChh----------------hhccCCCCCEEECCC
Confidence 455566666666666665544 3445566666666666643 4455432 466778888888888
Q ss_pred ecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCC
Q 040680 350 FGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPP 427 (459)
Q Consensus 350 ~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
|. ...++ .|+++++|++|+++++. +...+...+. .+++|+.|++++| .+..++..... ..
T Consensus 107 n~--l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~-----------~~ 168 (680)
T 1ziw_A 107 NS--IQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQV---QLENLQELLLSNN-KIQALKSEELD-----------IF 168 (680)
T ss_dssp SC--CCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSS---CCTTCCEEECCSS-CCCCBCHHHHG-----------GG
T ss_pred Cc--cCccChhHccccCCCCEEECCCCc-ccccCchhhc---ccccCCEEEccCC-cccccCHHHhh-----------cc
Confidence 83 33343 38888888888888863 4444333333 6788888888885 45555432110 00
Q ss_pred CCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 428 SFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 428 ~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.|++++| .+..++. +++|+ .|.+
T Consensus 169 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l 202 (680)
T 1ziw_A 169 ANSSLKKLELSSN-QIKEFSPGCFHAIGRLF-GLFL 202 (680)
T ss_dssp TTCEESEEECTTC-CCCCBCTTGGGGSSEEC-EEEC
T ss_pred ccccccEEECCCC-cccccChhhhhhhhhhh-hhhc
Confidence 4588999999998 4555544 55565 5543
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=4.9e-13 Score=136.07 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=33.4
Q ss_pred CCCccceEeecCCCCccccCcccccccCCCeeccCCCc
Q 040680 273 SKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCR 310 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~ 310 (459)
...++|+.|++++|.++.+|.+|+++++|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccch
Confidence 56788899999999999999999999999999987654
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.24 E-value=3.1e-11 Score=120.40 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=109.1
Q ss_pred cCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCC---C---cchHHHhhccCCCC
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHT---D---VDVEALLDDLKPHK 340 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~---~---~~~~~~~~~l~~l~ 340 (459)
.+| .+..+++|++|++++|.+..+|+ ++++++|++|++++|. +..+|. +..+... . .....++ .++.++
T Consensus 60 ~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 134 (466)
T 1o6v_A 60 SID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQITDID-PLKNLT 134 (466)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred cCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCCCCCCCh-HHcCCC
Confidence 344 47789999999999999999887 9999999999999976 666664 4333211 0 1111222 266777
Q ss_pred CcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCC
Q 040680 341 NLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSK 420 (459)
Q Consensus 341 ~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 420 (459)
+|++|++++| ....++.++.+++|++|++++ .+..++. ...+++|+.|++++| .+..++. ..
T Consensus 135 ~L~~L~l~~n--~l~~~~~~~~l~~L~~L~l~~--~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~-l~------- 196 (466)
T 1o6v_A 135 NLNRLELSSN--TISDISALSGLTSLQQLSFGN--QVTDLKP-----LANLTTLERLDISSN-KVSDISV-LA------- 196 (466)
T ss_dssp TCSEEEEEEE--EECCCGGGTTCTTCSEEEEEE--SCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GG-------
T ss_pred CCCEEECCCC--ccCCChhhccCCcccEeecCC--cccCchh-----hccCCCCCEEECcCC-cCCCChh-hc-------
Confidence 7777777777 344455677777777777753 2333322 227788889998886 4666543 33
Q ss_pred cCCCCCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 421 IDMIEPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.+++|+.|++++| .+..++. +++|+ .|.+
T Consensus 197 -------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~-~L~l 228 (466)
T 1o6v_A 197 -------KLTNLESLIATNN-QISDITPLGILTNLD-ELSL 228 (466)
T ss_dssp -------GCTTCSEEECCSS-CCCCCGGGGGCTTCC-EEEC
T ss_pred -------cCCCCCEEEecCC-cccccccccccCCCC-EEEC
Confidence 6889999999999 4555554 77888 7765
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=6.5e-11 Score=112.56 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 428 SFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 428 ~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|++|++++| .+..+|. +++|+ .|.+
T Consensus 191 ~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~-~L~L 224 (332)
T 2ft3_A 191 LPETLNELHLDHN-KIQAIELEDLLRYSKLY-RLGL 224 (332)
T ss_dssp SCSSCSCCBCCSS-CCCCCCTTSSTTCTTCS-CCBC
T ss_pred ccCCCCEEECCCC-cCCccCHHHhcCCCCCC-EEEC
Confidence 4578999999999 5666653 66777 7765
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=1.6e-11 Score=115.62 Aligned_cols=167 Identities=17% Similarity=0.090 Sum_probs=96.6
Q ss_pred CCccceEeecCCCCcc-ccCccc--ccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 274 KLKHLWYLNLPGNGIT-KLPNSV--SKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 274 ~l~~L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
++++|++|++++|.+. .+|..+ +.+++|++|++++|. +..+|..+..+ + ...+++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l----------~--~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL----------Q--QWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH----------H--TTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH----------H--HhhcCCCcEEEeeCC
Confidence 6889999999999998 688876 899999999999976 66667544222 0 011366777777766
Q ss_pred cccccCCCCCCCCCCCcEEecCCCcCcce--eccccCcCCCCCCCcCEEeecCCCCCCccc---cccc--------cCCC
Q 040680 351 GVRCQYIPQLEQLPSLKSLTLSWLDALVY--ICFSSIASRTRFSSLEYISILGCPELKGWL---RRID--------NDAD 417 (459)
Q Consensus 351 ~~~~~~l~~l~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~--------~~~~ 417 (459)
.........++.+++|++|+++++.-... ++.... ...+++|++|+|++| ++..++ .... ...+
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC--PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC--TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH--hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECC
Confidence 22211112366677777777776542222 111110 015566666666664 344221 1110 0011
Q ss_pred CCCcCCCC---C-CCCCccceeeecCCCCCCCCCC-C-CCCccceee
Q 040680 418 GSKIDMIE---P-PSFPCLSELDISGCPKLILIPL-Y-PYLETDWRI 458 (459)
Q Consensus 418 ~~~~~~~~---~-~~l~~L~~L~l~~c~~l~~lP~-l-~~L~~~L~i 458 (459)
+..+...+ . ..+++|+.|++++| .++.+|. + ++|+ .|.+
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~-~L~L 281 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLS-VLDL 281 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEE-EEEC
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCce-EEEC
Confidence 22222211 1 14678888888888 5778887 3 4677 6665
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.23 E-value=2.5e-12 Score=122.51 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=23.5
Q ss_pred ccccCCCccceEeecCCCCcc-ccCcccccccCCCeeccCCCc
Q 040680 269 PSSISKLKHLWYLNLPGNGIT-KLPNSVSKLLNLETPDCNGCR 310 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~ 310 (459)
|..+..+++|++|++++|.+. ..|..++++++|++|++++|.
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 344555556666666665554 345555556666666666553
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.22 E-value=3.7e-11 Score=122.95 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=51.9
Q ss_pred cceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeeccccc
Q 040680 277 HLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQ 355 (459)
Q Consensus 277 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 355 (459)
++++|++++|.++.++. .|.++++|++|++++|. +..+|.. .++.+++|++|++++| ...
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~----------------~~~~l~~L~~L~L~~n--~l~ 89 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG----------------AYQSLSHLSTLILTGN--PIQ 89 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTT----------------TTTTCTTCCEEECTTC--CCC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcc----------------cccCchhCCEEeCcCC--cCC
Confidence 46666666666665533 56666666666666654 4444322 3344455555555555 122
Q ss_pred CCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 356 YIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 356 ~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
.++ .|+++++|++|+++++ .++.++...++ .+++|++|++++|
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~---~l~~L~~L~L~~n 134 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVET-NLASLENFPIG---HLKTLKELNVAHN 134 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTS-CCCCSTTCSCT---TCTTCCEEECCSS
T ss_pred ccCHhhhcCcccccccccccc-ccccCCCcccc---ccccccEEecCCC
Confidence 221 2555555555555553 33333332222 4555555555553
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=2.8e-10 Score=109.12 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=102.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc-----ccHHHHHHHHHHHhcc------------------
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI-----FYHKAMLEKIIAFVAY------------------ 62 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~------------------ 62 (459)
+++.|+|++|+|||+|++++++ .... .++|+++... .+.......+.+.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 105 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI 105 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence 5899999999999999999998 3332 2578887643 2334444444433310
Q ss_pred --ccC---------CccCHHHHHHHHHhhcCCceEEEEEeCCCCCC----hhhHHHHHHhhccCCCCcEEEEeecchhh-
Q 040680 63 --REF---------SKHDLNKLQEVHHQKIDRKKYLLVLDDVWIEN----CDEWLKLETLLRNSAGGSNIIVATRSERV- 126 (459)
Q Consensus 63 --~~~---------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~iiiTtr~~~~- 126 (459)
... .........+.+.+.-+ ++++||+||++..+ ...+..+..... ...+.++|+|++....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l 183 (357)
T 2fna_A 106 VIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLL 183 (357)
T ss_dssp EECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHH
T ss_pred EecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHH
Confidence 000 12345555555555433 48999999996532 122333333332 2346789999987531
Q ss_pred ------h-----------c-----cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhhhhhc
Q 040680 127 ------A-----------R-----GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLLYC 182 (459)
Q Consensus 127 ------~-----------~-----~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~ 182 (459)
. . +|+.+|+.+++........... .. ...|++.++|+|+++..++..+..
T Consensus 184 ~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~----~~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 184 YDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD----YEVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC----HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc----HHHHHHHhCCCHHHHHHHHHHHcc
Confidence 0 1 8999999999987543212111 11 278999999999999998877643
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=8e-12 Score=104.10 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=92.7
Q ss_pred CCccceEeecCCCCcc--ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 274 KLKHLWYLNLPGNGIT--KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 274 ~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
...+|++|++++|.+. .+|..++.+++|++|++++|. +..++ .++.+++|++|++++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------------------~~~~l~~L~~L~Ls~n- 74 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIA------------------NLPKLNKLKKLELSDN- 74 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCT------------------TCCCCTTCCEEECCSS-
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCch------------------hhhcCCCCCEEECCCC-
Confidence 3468999999999998 889888999999999999975 55552 4567789999999988
Q ss_pred ccccC-CCC-CCCCCCCcEEecCCCcCcceecc-ccCcCCCCCCCcCEEeecCCCCCCcccc----ccccCCCCCCcCCC
Q 040680 352 VRCQY-IPQ-LEQLPSLKSLTLSWLDALVYICF-SSIASRTRFSSLEYISILGCPELKGWLR----RIDNDADGSKIDMI 424 (459)
Q Consensus 352 ~~~~~-l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~~----~~~~~~~~~~~~~~ 424 (459)
.... +|. ++.+++|++|+++++ .++.++. ..+. .+++|+.|++++| .+..++. .+.
T Consensus 75 -~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~~~~~~----------- 137 (149)
T 2je0_A 75 -RVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK---KLENLKSLDLFNC-EVTNLNDYRENVFK----------- 137 (149)
T ss_dssp -CCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGG---GCTTCCEEECTTC-GGGGSTTHHHHHHH-----------
T ss_pred -cccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHh---hCCCCCEEeCcCC-cccchHHHHHHHHH-----------
Confidence 3333 454 556888999999886 3555431 2223 6788888988886 5666654 233
Q ss_pred CCCCCCccceeeecC
Q 040680 425 EPPSFPCLSELDISG 439 (459)
Q Consensus 425 ~~~~l~~L~~L~l~~ 439 (459)
.+++|+.|++++
T Consensus 138 ---~l~~L~~L~l~d 149 (149)
T 2je0_A 138 ---LLPQLTYLDGYD 149 (149)
T ss_dssp ---HCTTCCEETTBC
T ss_pred ---HCCCcccccCCC
Confidence 678888888763
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=1e-10 Score=122.27 Aligned_cols=163 Identities=19% Similarity=0.108 Sum_probs=95.9
Q ss_pred CccccCCCccceEeecCCCCcc-ccC-cccccccCCCeeccCCCccccccccccccCCCC---C-----cc-hHHHhhcc
Q 040680 268 VPSSISKLKHLWYLNLPGNGIT-KLP-NSVSKLLNLETPDCNGCRSLAELPRILEGCGHT---D-----VD-VEALLDDL 336 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~-~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~---~-----~~-~~~~~~~l 336 (459)
.|..+..+.+|++|++++|.+. .+| ..+.++++|++|++++|......|..+..+.-. . .. ...+|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 4566777888888888888776 455 467778888888888765322222233222100 0 00 13356667
Q ss_pred CCCCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCc-----CCCCCCCcCEEeecCCCCCCccc
Q 040680 337 KPHKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIA-----SRTRFSSLEYISILGCPELKGWL 409 (459)
Q Consensus 337 ~~l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~-----~~~~l~~L~~L~L~~~~~l~~~~ 409 (459)
+.+++|++|++++| ....++. |+.+++|++|+++++ .+..++...++ ....+++|+.|+|+++ .+..+|
T Consensus 477 ~~l~~L~~L~Ls~N--~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~ 552 (680)
T 1ziw_A 477 QPLRNLTILDLSNN--NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIP 552 (680)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCC
T ss_pred ccCCCCCEEECCCC--CCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCC
Confidence 77888888888887 3333332 777888888888875 35444322111 1236677888888774 566666
Q ss_pred cccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC
Q 040680 410 RRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL 448 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~ 448 (459)
..... .+++|+.|++++| +++.+|.
T Consensus 553 ~~~~~-------------~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 553 VEVFK-------------DLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp TTTTT-------------TCTTCCEEECCSS-CCCCCCT
T ss_pred HHHcc-------------cccCcceeECCCC-CCCcCCH
Confidence 43211 4555555555555 4555554
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=116.18 Aligned_cols=156 Identities=12% Similarity=-0.026 Sum_probs=92.8
Q ss_pred Ccccc--CCCccceEeecCCCCcccc-C----cccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCC
Q 040680 268 VPSSI--SKLKHLWYLNLPGNGITKL-P----NSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHK 340 (459)
Q Consensus 268 lp~~~--~~l~~L~~L~l~~~~i~~l-p----~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~ 340 (459)
.|..+ ..+.+|++|++++|.+... | ..+..+++|++|++++|. +..+|. ..++.++
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~----------------~~~~~l~ 169 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSC----------------EQVRAFP 169 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCT----------------TSCCCCT
T ss_pred hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhH----------------HHhccCC
Confidence 44444 6666777777777766532 2 233456677777777654 344432 2456667
Q ss_pred CcceEeeeeecccc---cCCCC-CCCCCCCcEEecCCCcCcceeccc---cCcCCCCCCCcCEEeecCCCCCCcc-cccc
Q 040680 341 NLRELSIFYFGVRC---QYIPQ-LEQLPSLKSLTLSWLDALVYICFS---SIASRTRFSSLEYISILGCPELKGW-LRRI 412 (459)
Q Consensus 341 ~L~~L~l~~~~~~~---~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~ 412 (459)
+|++|++++|.... ...+. ++.+++|++|++++| .++.++.. .+. .+++|+.|+|++| .+... |...
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~---~l~~L~~L~Ls~N-~l~~~~p~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA---AGVQPHSLDLSHN-SLRATVNPSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH---HTCCCSSEECTTS-CCCCCCCSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh---cCCCCCEEECCCC-CCCccchhhH
Confidence 77777777772111 01111 366777777777775 34433321 111 4577888888775 45444 4433
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC--CCCCccceee
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL--YPYLETDWRI 458 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~--l~~L~~~L~i 458 (459)
.. ...+++|++|++++| .++.+|. .++|+ .|.+
T Consensus 245 ~~-----------~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~-~L~L 279 (310)
T 4glp_A 245 PR-----------CMWSSALNSLNLSFA-GLEQVPKGLPAKLR-VLDL 279 (310)
T ss_dssp SS-----------CCCCTTCCCEECCSS-CCCSCCSCCCSCCS-CEEC
T ss_pred Hh-----------ccCcCcCCEEECCCC-CCCchhhhhcCCCC-EEEC
Confidence 31 002379999999999 6779998 56788 8876
No 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=9.2e-11 Score=102.14 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=57.7
Q ss_pred ccCccccCCCccceEeecCCCCccccCcc--cccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPNS--VSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
..+|..+.. +|++|++++|.+..+|.. ++++++|++|++++|. +..++ +..++.+++|+
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~----------------~~~~~~l~~L~ 81 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE----------------PNAFEGASHIQ 81 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC----------------TTTTTTCTTCC
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcC----------------HhHcCCcccCC
Confidence 344444332 566666666666655542 5666666666666644 33332 12344456666
Q ss_pred eEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 344 ELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
+|++++|.........|+.+++|++|+++++ .+..++...+. .+++|+.|+|+++
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N 136 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFE---HLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSST---TCTTCCEEECTTC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhh---cCCCCCEEEeCCC
Confidence 6666666221111112556666666666653 34444333222 4556666666653
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.21 E-value=1.5e-10 Score=118.68 Aligned_cols=101 Identities=26% Similarity=0.314 Sum_probs=51.6
Q ss_pred cCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcch---HHHhhccCCCCCcc
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDV---EALLDDLKPHKNLR 343 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~---~~~~~~l~~l~~L~ 343 (459)
.+|..+. ++|++|++++|.++.+|. .+++|++|++++|+ +..+|..+..+....... ..++. .+++|+
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 3454443 566666666666666665 45666666666654 555554221111111000 11111 345666
Q ss_pred eEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceec
Q 040680 344 ELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYIC 381 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~ 381 (459)
.|++++| ....+|. .+++|++|++++| .++.++
T Consensus 125 ~L~L~~N--~l~~lp~--~l~~L~~L~Ls~N-~l~~l~ 157 (622)
T 3g06_A 125 KLWIFGN--QLTSLPV--LPPGLQELSVSDN-QLASLP 157 (622)
T ss_dssp EEECCSS--CCSCCCC--CCTTCCEEECCSS-CCSCCC
T ss_pred EEECCCC--CCCcCCC--CCCCCCEEECcCC-cCCCcC
Confidence 6766666 3344443 2467777777765 344443
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=2.5e-11 Score=116.27 Aligned_cols=151 Identities=18% Similarity=0.105 Sum_probs=103.1
Q ss_pred ccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCC-CCcceEe
Q 040680 269 PSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPH-KNLRELS 346 (459)
Q Consensus 269 p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~ 346 (459)
|..|..+++|++|++++|.+..+|. .+....++..|++.+++.+..+|.. .+..+ ..|+.|+
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~----------------~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN----------------SFVGLSFESVILW 160 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----------------SSTTSBSSCEEEE
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc----------------chhhcchhhhhhc
Confidence 3445566666666666666655544 3334445555555554445555432 33333 4688899
Q ss_pred eeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 347 IFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 347 l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
+++| ....+|. ....++|+.|.+.+++.++.++...+. .+++|+.|+|+++ ++..+|..
T Consensus 161 L~~N--~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~---~l~~L~~LdLs~N-~l~~lp~~-------------- 220 (350)
T 4ay9_X 161 LNKN--GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH---GASGPVILDISRT-RIHSLPSY-------------- 220 (350)
T ss_dssp CCSS--CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT---TEECCSEEECTTS-CCCCCCSS--------------
T ss_pred cccc--cccCCChhhccccchhHHhhccCCcccCCCHHHhc---cCcccchhhcCCC-CcCccChh--------------
Confidence 9988 3444443 445678999999888889988876665 7889999999985 68888764
Q ss_pred CCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 426 PPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
.|.+|++|.+.+|..++.+|. +++|+ .+.+
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP~l~~l~~L~-~l~l 253 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLPTLEKLVALM-EASL 253 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCCCTTTCCSCC-EEEC
T ss_pred --hhccchHhhhccCCCcCcCCCchhCcChh-hCcC
Confidence 678899999999999999998 56666 5554
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.5e-11 Score=105.59 Aligned_cols=131 Identities=22% Similarity=0.244 Sum_probs=102.1
Q ss_pred cccCCCccceEeecCCCCccccCccccccc-CCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeee
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPNSVSKLL-NLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIF 348 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 348 (459)
..+.++.+|++|++++|.++.+|. +..+. +|++|++++|. +..++ .++.+++|++|+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~------------------~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVN 72 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCccc------------------ccccCCCCCEEECC
Confidence 346678899999999999998865 55655 99999999976 66553 56778999999999
Q ss_pred eecccccCCC-C-CCCCCCCcEEecCCCcCcceecc-ccCcCCCCCCCcCEEeecCCCCCCccccc----cccCCCCCCc
Q 040680 349 YFGVRCQYIP-Q-LEQLPSLKSLTLSWLDALVYICF-SSIASRTRFSSLEYISILGCPELKGWLRR----IDNDADGSKI 421 (459)
Q Consensus 349 ~~~~~~~~l~-~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~~~----~~~~~~~~~~ 421 (459)
+| ....+| . ++.+++|++|+++++ .++.++. ..+. .+++|+.|++++| .+..+|.. +.
T Consensus 73 ~N--~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~---~l~~L~~L~l~~N-~i~~~~~~~~~~~~-------- 137 (176)
T 1a9n_A 73 NN--RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLA---SLKSLTYLCILRN-PVTNKKHYRLYVIY-------- 137 (176)
T ss_dssp SS--CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGG---GCTTCCEEECCSS-GGGGSTTHHHHHHH--------
T ss_pred CC--cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhh---cCCCCCEEEecCC-CCCCcHhHHHHHHH--------
Confidence 99 344455 3 588999999999986 5666664 1223 7899999999996 46666654 44
Q ss_pred CCCCCCCCCccceeeecCCC
Q 040680 422 DMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~ 441 (459)
.+|+|+.|++++|+
T Consensus 138 ------~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 138 ------KVPQVRVLDFQKVK 151 (176)
T ss_dssp ------HCTTCSEETTEECC
T ss_pred ------HCCccceeCCCcCC
Confidence 78999999999885
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=7.8e-11 Score=102.64 Aligned_cols=124 Identities=20% Similarity=0.275 Sum_probs=99.5
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
++++++++.+..+|..+. ++|++|++++|. +..+|.. +..+++|++|++++| ....++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~-----------------~~~l~~L~~L~Ls~N--~i~~i~ 70 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKE-----------------LSNYKHLTLIDLSNN--RISTLS 70 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGG-----------------GGGCTTCCEEECCSS--CCCCCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHH-----------------hhcccCCCEEECCCC--cCCEeC
Confidence 678999999999998764 689999999965 7788754 455699999999999 344444
Q ss_pred --CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceee
Q 040680 359 --QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELD 436 (459)
Q Consensus 359 --~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 436 (459)
.|..+++|++|+++++ .++.++...+. .+++|+.|+|++ +.+..++..... .+++|+.|+
T Consensus 71 ~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~---~l~~L~~L~L~~-N~l~~~~~~~~~-------------~l~~L~~L~ 132 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYN-RLRCIPPRTFD---GLKSLRLLSLHG-NDISVVPEGAFN-------------DLSALSHLA 132 (193)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCBCCTTTTT---TCTTCCEEECCS-SCCCBCCTTTTT-------------TCTTCCEEE
T ss_pred HhHccCCCCCCEEECCCC-ccCEeCHHHhC---CCCCCCEEECCC-CCCCeeChhhhh-------------cCccccEEE
Confidence 3999999999999985 57777765554 789999999999 468888765322 799999999
Q ss_pred ecCCCC
Q 040680 437 ISGCPK 442 (459)
Q Consensus 437 l~~c~~ 442 (459)
+++|+.
T Consensus 133 L~~N~~ 138 (193)
T 2wfh_A 133 IGANPL 138 (193)
T ss_dssp CCSSCE
T ss_pred eCCCCe
Confidence 998863
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.21 E-value=5.8e-11 Score=127.19 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=23.6
Q ss_pred CccceEeecCCCCcccc-CcccccccCCCeeccCCCcccccc
Q 040680 275 LKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAEL 315 (459)
Q Consensus 275 l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~l 315 (459)
..+|++|+|++|.++.+ |.+|.++++|++|++++|.....+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i 64 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc
Confidence 34566666666666544 445666666666666665444444
No 110
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.2e-10 Score=99.84 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=68.1
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
+.++++++.+..+|..+. ++|+.|++++|. +..+|.. .++.+++|++|++++| ....++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~----------------~~~~l~~L~~L~l~~n--~l~~~~ 68 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHG----------------VFDKLTQLTKLSLSQN--QIQSLP 68 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTT----------------TTTTCTTCSEEECCSS--CCCCCC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHH----------------HhcCcccccEEECCCC--cceEeC
Confidence 455666666666664432 466666666644 4444422 3445566666666666 223333
Q ss_pred C--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceee
Q 040680 359 Q--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELD 436 (459)
Q Consensus 359 ~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 436 (459)
. ++.+++|++|+++++ .++.++...+. .+++|++|+|+++ .+..++..... .+++|++|+
T Consensus 69 ~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~~~-------------~l~~L~~L~ 130 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHEN-KLQSLPNGVFD---KLTQLKELALDTN-QLKSVPDGIFD-------------RLTSLQKIW 130 (177)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTT-------------TCTTCCEEE
T ss_pred hhHccCCCccCEEECCCC-CccccCHHHhh---CCcccCEEECcCC-cceEeCHHHhc-------------CCcccCEEE
Confidence 2 556666666666653 34444443332 5566666666663 45555543211 456666666
Q ss_pred ecCCCCC
Q 040680 437 ISGCPKL 443 (459)
Q Consensus 437 l~~c~~l 443 (459)
+++|+..
T Consensus 131 l~~N~~~ 137 (177)
T 2o6r_A 131 LHTNPWD 137 (177)
T ss_dssp CCSSCBC
T ss_pred ecCCCee
Confidence 6666433
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.19 E-value=8.5e-11 Score=116.58 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=50.7
Q ss_pred CCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccccc-----
Q 040680 340 KNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDN----- 414 (459)
Q Consensus 340 ~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~----- 414 (459)
++|++|++++| ....+|.++.+++|++|+++++ .++.+|. .+++|++|++++| .+..+|. +..
T Consensus 131 ~~L~~L~L~~n--~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~-------~~~~L~~L~L~~n-~l~~l~~-~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNN--QLEKLPELQNSSFLKIIDVDNN-SLKKLPD-------LPPSLEFIAAGNN-QLEELPE-LQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSS--CCSSCCCCTTCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCSSCCC-CTTCTTCC
T ss_pred CCCCEEECcCC--CCCCCcccCCCCCCCEEECCCC-cCcccCC-------CcccccEEECcCC-cCCcCcc-ccCCCCCC
Confidence 45666666665 2333555666666666666654 3333332 1235555555553 3333331 110
Q ss_pred --CCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC---CCCCccceee
Q 040680 415 --DADGSKIDMIEPPSFPCLSELDISGCPKLILIPL---YPYLETDWRI 458 (459)
Q Consensus 415 --~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~---l~~L~~~L~i 458 (459)
...+..+..++. ..++|++|++++| .+..+|. +++|+ .|.+
T Consensus 199 ~L~l~~N~l~~l~~-~~~~L~~L~l~~n-~l~~lp~~~~l~~L~-~L~l 244 (454)
T 1jl5_A 199 AIYADNNSLKKLPD-LPLSLESIVAGNN-ILEELPELQNLPFLT-TIYA 244 (454)
T ss_dssp EEECCSSCCSSCCC-CCTTCCEEECCSS-CCSSCCCCTTCTTCC-EEEC
T ss_pred EEECCCCcCCcCCC-CcCcccEEECcCC-cCCcccccCCCCCCC-EEEC
Confidence 000111111111 2357788888777 5667776 56666 6654
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.18 E-value=6.2e-11 Score=126.97 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=27.2
Q ss_pred CccccCCCccceEeecCCCC-cccc-CcccccccCCCeeccCCCc
Q 040680 268 VPSSISKLKHLWYLNLPGNG-ITKL-PNSVSKLLNLETPDCNGCR 310 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~l~~L~~L~l~~~~ 310 (459)
.|..|.++++|++|++++|. +..+ |..|+++++|++|++++|.
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 34556667777777777663 3455 5566667777777777654
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1.2e-11 Score=129.87 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=92.9
Q ss_pred cCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEe
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELS 346 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (459)
..|..+..+..|++|+|++|.+..+|..+.++++|++|+|++|. +..+|..+ +.+++|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~-----------------~~l~~L~~L~ 276 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEI-----------------KNLSNLRVLD 276 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGG-----------------GGGTTCCEEE
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhh-----------------hCCCCCCEEe
Confidence 45677899999999999999999999999999999999999976 66888554 5559999999
Q ss_pred eeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccc
Q 040680 347 IFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLR 410 (459)
Q Consensus 347 l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 410 (459)
|++| ....+|. |+.|++|++|+|++| .++.+|.. ++ .+++|+.|+|++|+--..+|.
T Consensus 277 Ls~N--~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~---~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 277 LSHN--RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FG---NLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CTTS--CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TT---SCTTCCCEECTTSCCCSHHHH
T ss_pred CcCC--cCCccChhhcCCCCCCEEECCCC-CCCccChh-hh---cCCCccEEeCCCCccCCCChH
Confidence 9999 3446665 999999999999986 67788765 33 789999999999643333443
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.16 E-value=5.6e-12 Score=120.05 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=50.0
Q ss_pred cCCCccceEeecCCCCccc--cCcccccccCCCeeccCCCccccccccccccCC--------CC-CcchHHHhhccCCCC
Q 040680 272 ISKLKHLWYLNLPGNGITK--LPNSVSKLLNLETPDCNGCRSLAELPRILEGCG--------HT-DVDVEALLDDLKPHK 340 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~--------~~-~~~~~~~~~~l~~l~ 340 (459)
+..+.+|++|++++|.+.. +|..+.++++|++|++++|......|..+..+. .. ......++..++.++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 4455666666666665542 555566666666666666543223443332221 00 111123444455556
Q ss_pred CcceEeeeee-cccccCCCC-CCCCC-CCcEEecCCC
Q 040680 341 NLRELSIFYF-GVRCQYIPQ-LEQLP-SLKSLTLSWL 374 (459)
Q Consensus 341 ~L~~L~l~~~-~~~~~~l~~-l~~l~-~L~~L~l~~~ 374 (459)
+|++|++++| ......++. +..++ +|++|++++|
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6666666555 322211222 44555 5666666554
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=1.5e-11 Score=116.20 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=96.6
Q ss_pred CCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecc
Q 040680 274 KLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGV 352 (459)
Q Consensus 274 ~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 352 (459)
.+++|++|++++|.+..++. .++.+++|++|++++|. +..++.. ...+.+++|++|++++|
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---------------~~~~~l~~L~~L~L~~N-- 179 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA---------------ELAASSDTLEHLNLQYN-- 179 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGG---------------GGGGGTTTCCEEECTTS--
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHH---------------HHhhccCcCCEEECCCC--
Confidence 35677888888887776644 67778888888888765 4444321 11235689999999998
Q ss_pred cccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCcc
Q 040680 353 RCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCL 432 (459)
Q Consensus 353 ~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 432 (459)
....++....+++|++|+++++ .++.++..+ . .+++|+.|+|++| .+..+|..+. .+++|
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~---~l~~L~~L~L~~N-~l~~l~~~~~--------------~l~~L 239 (317)
T 3o53_A 180 FIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEF-Q---SAAGVTWISLRNN-KLVLIEKALR--------------FSQNL 239 (317)
T ss_dssp CCCEEECCCCCTTCCEEECCSS-CCCEECGGG-G---GGTTCSEEECTTS-CCCEECTTCC--------------CCTTC
T ss_pred cCcccccccccccCCEEECCCC-cCCcchhhh-c---ccCcccEEECcCC-cccchhhHhh--------------cCCCC
Confidence 4445566667899999999985 577776653 3 6789999999985 6888877655 78999
Q ss_pred ceeeecCCCCC
Q 040680 433 SELDISGCPKL 443 (459)
Q Consensus 433 ~~L~l~~c~~l 443 (459)
+.|++++|+..
T Consensus 240 ~~L~l~~N~~~ 250 (317)
T 3o53_A 240 EHFDLRGNGFH 250 (317)
T ss_dssp CEEECTTCCCB
T ss_pred CEEEccCCCcc
Confidence 99999999654
No 116
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=117.86 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=109.6
Q ss_pred cCccccCCCccceEeecCCCCccc---cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITK---LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
..|..++++++|++|++++|.+.. +|..++++++|++|++++|.....+|.. .+..+++|+
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----------------~~~~l~~L~ 402 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG----------------DCSWTKSLL 402 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----------------SCCCCTTCC
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc----------------hhccCccCC
Confidence 467889999999999999999884 5577999999999999997743337754 356679999
Q ss_pred eEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCCCCCcC
Q 040680 344 ELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDADGSKID 422 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~~ 422 (459)
+|++++|......+..+. ++|+.|++++| .++.+|.... .+++|+.|++++| ++..+|.. +.
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~--------- 465 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVV----KLEALQELNVASN-QLKSVPDGIFD--------- 465 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGG----GCTTCCEEECCSS-CCCCCCTTTTT---------
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhh----cCCCCCEEECCCC-cCCccCHHHhc---------
Confidence 999999943322222232 79999999986 5777776553 7899999999996 68888876 43
Q ss_pred CCCCCCCCccceeeecCCCCC
Q 040680 423 MIEPPSFPCLSELDISGCPKL 443 (459)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l 443 (459)
.+++|++|++++|+..
T Consensus 466 -----~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 466 -----RLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -----TCTTCCEEECCSSCBC
T ss_pred -----cCCcccEEECcCCCCc
Confidence 7899999999999644
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=8.7e-11 Score=119.48 Aligned_cols=147 Identities=19% Similarity=0.175 Sum_probs=91.3
Q ss_pred cCccccCCCccceEee-cCCCCccccCc------ccccc--cCCCeeccCCCccccccccccccCCCCCcchHHHhhccC
Q 040680 267 IVPSSISKLKHLWYLN-LPGNGITKLPN------SVSKL--LNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLK 337 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~-l~~~~i~~lp~------~i~~l--~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~ 337 (459)
..|..++++.+|+.|+ ++.+.+..++. .+..+ ..|++|++++|. +..+|. ++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~------------------~~ 460 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH------------------LE 460 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC------------------GG
T ss_pred CCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC------------------cc
Confidence 3455566677777776 45443333222 11111 247778887754 666663 34
Q ss_pred CCCCcceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc--cccccc
Q 040680 338 PHKNLRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW--LRRIDN 414 (459)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~--~~~~~~ 414 (459)
.+++|+.|++++| ....+|. ++.+++|+.|+++++ .++.+| . ++ .+++|+.|+|++| ++..+ |..+.
T Consensus 461 ~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~---~l~~L~~L~Ls~N-~l~~~~~p~~l~- 530 (567)
T 1dce_A 461 QLLLVTHLDLSHN--RLRALPPALAALRCLEVLQASDN-ALENVD-G-VA---NLPRLQELLLCNN-RLQQSAAIQPLV- 530 (567)
T ss_dssp GGTTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GT---TCSSCCEEECCSS-CCCSSSTTGGGG-
T ss_pred ccccCcEeecCcc--cccccchhhhcCCCCCEEECCCC-CCCCCc-c-cC---CCCCCcEEECCCC-CCCCCCCcHHHh-
Confidence 4577888888777 3335554 777788888888774 455555 2 22 6778888888874 56666 55555
Q ss_pred CCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC--------CCCCcccee
Q 040680 415 DADGSKIDMIEPPSFPCLSELDISGCPKLILIPL--------YPYLETDWR 457 (459)
Q Consensus 415 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~--------l~~L~~~L~ 457 (459)
.+++|+.|++++| .+..+|. +|+|+ .|.
T Consensus 531 -------------~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~-~L~ 566 (567)
T 1dce_A 531 -------------SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVS-SIL 566 (567)
T ss_dssp -------------GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCS-EEE
T ss_pred -------------cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccC-ccC
Confidence 6788888888887 4555554 66776 654
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=2.9e-10 Score=115.22 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=49.7
Q ss_pred CCCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCC
Q 040680 339 HKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADG 418 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 418 (459)
+++|++|++++| ....+|. .+++|++|++++| .++.+|. + . ++|+.|+|++| ++..+|. +...
T Consensus 139 l~~L~~L~Ls~N--~l~~lp~--~l~~L~~L~Ls~N-~L~~lp~-l-----~-~~L~~L~Ls~N-~L~~lp~-~~~~--- 201 (571)
T 3cvr_A 139 PALLEYINADNN--QLTMLPE--LPTSLEVLSVRNN-QLTFLPE-L-----P-ESLEALDVSTN-LLESLPA-VPVR--- 201 (571)
T ss_dssp CTTCCEEECCSS--CCSCCCC--CCTTCCEEECCSS-CCSCCCC-C-----C-TTCCEEECCSS-CCSSCCC-CC-----
T ss_pred CccccEEeCCCC--ccCcCCC--cCCCcCEEECCCC-CCCCcch-h-----h-CCCCEEECcCC-CCCchhh-HHHh---
Confidence 466667776666 3333454 4566677776664 3444444 1 1 56667777664 4555554 2200
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
. ....+.|+.|++++| .+..+|. +++|+ .|.+
T Consensus 202 --L----~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~-~L~L 237 (571)
T 3cvr_A 202 --N----HHSEETEIFFRCREN-RITHIPENILSLDPTC-TIIL 237 (571)
T ss_dssp ------------CCEEEECCSS-CCCCCCGGGGGSCTTE-EEEC
T ss_pred --h----hcccccceEEecCCC-cceecCHHHhcCCCCC-EEEe
Confidence 0 001122377777776 5666665 55565 5554
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=1.7e-10 Score=104.13 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=69.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHHHccCCC
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILMAFEQGV 148 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~~~~~~~ 148 (459)
.+++.+||+||++..+...+..+...+.....+..+|+||+...... +++.++..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 34678999999977666677777777776667888999887643221 79999999999888754332
Q ss_pred CCCCchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 040680 149 EPRGSRLVEIGKDIVEKCVGVPLAIRTVGRLL 180 (459)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 180 (459)
.. .++....|++.++|.|..+..+...+
T Consensus 204 ~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 23557789999999999887665433
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.13 E-value=4.6e-10 Score=115.14 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=38.8
Q ss_pred CCCcCEEeecCCCCCCcccccccc----CCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 391 FSSLEYISILGCPELKGWLRRIDN----DADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 391 l~~L~~L~L~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
+++|+.|+|++| ++..+|..... ..+++.+..+|. .+++|+.|++++| .+..+|. +++|+ .|.+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~-~L~L 291 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSET-TVNL 291 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS-CCCSCCGGGGGSCTTC-EEEC
T ss_pred CCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCCC-CCCcCCHHHhhccccC-EEEe
Confidence 467777777764 56555522211 122334444444 5677888888888 5677776 66777 6665
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=3e-10 Score=98.87 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=100.1
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
++++++++.+..+|..+.. +|++|++++|. +..+|.. ..++.+++|++|++++|........
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSD---------------GLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCS---------------CSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCc---------------cccccCCCCCEEECCCCCCCCcCHh
Confidence 7899999999999987754 89999999975 6777642 1256679999999999943322233
Q ss_pred CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc-ccccccCCCCCCcCCCCCCCCCccceeee
Q 040680 359 QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW-LRRIDNDADGSKIDMIEPPSFPCLSELDI 437 (459)
Q Consensus 359 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 437 (459)
.|+.+++|++|+++++ .++.++...+. .+++|+.|+|+++ ++..+ |..+. .+++|++|++
T Consensus 73 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~--------------~l~~L~~L~L 133 (192)
T 1w8a_A 73 AFEGASHIQELQLGEN-KIKEISNKMFL---GLHQLKTLNLYDN-QISCVMPGSFE--------------HLNSLTSLNL 133 (192)
T ss_dssp TTTTCTTCCEEECCSC-CCCEECSSSST---TCTTCCEEECCSS-CCCEECTTSST--------------TCTTCCEEEC
T ss_pred HcCCcccCCEEECCCC-cCCccCHHHhc---CCCCCCEEECCCC-cCCeeCHHHhh--------------cCCCCCEEEe
Confidence 4999999999999985 67777765544 7899999999995 56665 44455 8999999999
Q ss_pred cCCCCCC
Q 040680 438 SGCPKLI 444 (459)
Q Consensus 438 ~~c~~l~ 444 (459)
++|+.-.
T Consensus 134 ~~N~l~c 140 (192)
T 1w8a_A 134 ASNPFNC 140 (192)
T ss_dssp TTCCBCC
T ss_pred CCCCccC
Confidence 9996543
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=2.6e-09 Score=103.57 Aligned_cols=210 Identities=14% Similarity=0.018 Sum_probs=126.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccC--------CCeEEEEEeCCcc-cHHHHHHHHHHHhccccC--CccCHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNH--------FDLRIWMCISDIF-YHKAMLEKIIAFVAYREF--SKHDLNKL 73 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--------f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ 73 (459)
.+.|.|+|++|+|||++|+.+++ ..... ...++|++..... +...++..++..+..... ...+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 56899999999999999999998 33221 2356788876666 777888888888743221 22334556
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCChhh-HHH-HHHhhccCCCCcEEEEeecchhhhc-----------------cCChhh
Q 040680 74 QEVHHQKIDRKKYLLVLDDVWIENCDE-WLK-LETLLRNSAGGSNIIVATRSERVAR-----------------GLSKGQ 134 (459)
Q Consensus 74 ~~~l~~~l~~~~~LlvlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iiiTtr~~~~~~-----------------~l~~~e 134 (459)
...+.+.+..++.+||+|+++...... .+. +...+... .+..+|+||+...... +++.++
T Consensus 123 ~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~ 201 (384)
T 2qby_B 123 IDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQ 201 (384)
T ss_dssp HHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHH
T ss_pred HHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHH
Confidence 666777777666699999995421111 222 33333333 6778888988652210 789999
Q ss_pred hHHHHHHHHcc--CCCCCCCchHHHHHHHHHhhcC---CChH-HHHHHhhhhh--c---ccchhhhHhHhhhhhhhhhhc
Q 040680 135 SWSLFILMAFE--QGVEPRGSRLVEIGKDIVEKCV---GVPL-AIRTVGRLLY--C---NKIEAYWLPFRQEELSKIKQE 203 (459)
Q Consensus 135 a~~Lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l~--~---~~~~~~w~~~~~~~~~~~~~~ 203 (459)
..+++...+.. ..... .++....+++.++ |.|. |+.++..... . .-+.+.+..+.+...
T Consensus 202 ~~~il~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~------ 271 (384)
T 2qby_B 202 LKFILSKYAEYGLIKGTY----DDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE------ 271 (384)
T ss_dssp HHHHHHHHHHHTSCTTSC----CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhhcccCCc----CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh------
Confidence 99999987642 11111 1234566777777 8776 4444433221 1 113444444433321
Q ss_pred CCchhhHHHHhhccCchhHHHHHhhhhc
Q 040680 204 GNHILPILELSYNHIPSHLHQCFSYCVL 231 (459)
Q Consensus 204 ~~~i~~~l~~s~~~L~~~~k~~f~~l~~ 231 (459)
...+..++..++...+..+..++.
T Consensus 272 ----~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 272 ----QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp ----HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred ----cchHHHHHHcCCHHHHHHHHHHHH
Confidence 123445566777766666555543
No 123
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.11 E-value=3.2e-10 Score=115.87 Aligned_cols=140 Identities=19% Similarity=0.096 Sum_probs=110.3
Q ss_pred cCccccCCCccceEeecCCCCccccC---cccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLP---NSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp---~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
..|..++++++|++|++++|.++.+| ..++++++|++|++++|.....+|.. .+..+++|+
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------------~~~~l~~L~ 431 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----------------TCAWAESIL 431 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC----------------CCCCCTTCC
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh----------------hhcCcccCC
Confidence 46788899999999999999988655 57899999999999997743337754 456779999
Q ss_pred eEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc-cccCCCCCCcC
Q 040680 344 ELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR-IDNDADGSKID 422 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~~ 422 (459)
+|++++|......+..+. ++|+.|+++++ .++.+|...+ .+++|+.|+|+++ ++..+|.. +.
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~--------- 494 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVT----HLQALQELNVASN-QLKSVPDGVFD--------- 494 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTT----SSCCCSEEECCSS-CCCCCCTTSTT---------
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhc----CCCCCCEEECCCC-CCCCCCHHHHh---------
Confidence 999999943322222232 69999999986 6778876553 7889999999995 68888876 44
Q ss_pred CCCCCCCCccceeeecCCCCCC
Q 040680 423 MIEPPSFPCLSELDISGCPKLI 444 (459)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l~ 444 (459)
.+++|+.|++++|+...
T Consensus 495 -----~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 495 -----RLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp -----TCTTCCCEECCSCCBCC
T ss_pred -----cCCCCCEEEecCCCcCC
Confidence 78999999999997543
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=2.5e-09 Score=103.67 Aligned_cols=211 Identities=15% Similarity=0.018 Sum_probs=124.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC------CCeEEEEEeCCcccHHHHHHHHHHHhccccC-CccCHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH------FDLRIWMCISDIFYHKAMLEKIIAFVAYREF-SKHDLNKLQEV 76 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~ 76 (459)
..+.+.|+|++|+|||++|+.+++ ..... -..++|++.....+...++..++..++.... ...+.......
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYER 120 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 467899999999999999999998 33221 1256788887777888889999998865322 22234555555
Q ss_pred HHhhc--CCceEEEEEeCCCCCChh--hHHHHHHhhccC-----CCCcEEEEeecchhhhc------------------c
Q 040680 77 HHQKI--DRKKYLLVLDDVWIENCD--EWLKLETLLRNS-----AGGSNIIVATRSERVAR------------------G 129 (459)
Q Consensus 77 l~~~l--~~~~~LlvlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iiiTtr~~~~~~------------------~ 129 (459)
+...+ .+++.+||+|+++..... ..+.+...+... ..+..+|.||+...... +
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPP 200 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCC
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCC
Confidence 55555 356899999999653211 223333333322 44667777877652210 7
Q ss_pred CChhhhHHHHHHHHcc--CCCCCCCchHHHHHHHHHhhcC---CChH-HHHHHhhhhh---c-c---cchhhhHhHhhhh
Q 040680 130 LSKGQSWSLFILMAFE--QGVEPRGSRLVEIGKDIVEKCV---GVPL-AIRTVGRLLY---C-N---KIEAYWLPFRQEE 196 (459)
Q Consensus 130 l~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l~---~-~---~~~~~w~~~~~~~ 196 (459)
++.++..+++...+.. ..... .++....+++.++ |.|- ++.++..... . + -+.+.+..+....
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVL----DPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTB----CSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCC----CHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 8999999999887532 11111 1234566777777 9983 3333332221 1 1 1333443333322
Q ss_pred hhhhhhcCCchhhHHHHhhccCchhHHHHHhhhh
Q 040680 197 LSKIKQEGNHILPILELSYNHIPSHLHQCFSYCV 230 (459)
Q Consensus 197 ~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~l~ 230 (459)
. ...+.-++..++...+..+..++
T Consensus 277 ~----------~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 277 E----------RDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp H----------HHHHHHHHHSSCHHHHHHHHHHH
T ss_pred h----------hchHHHHHHcCCHHHHHHHHHHH
Confidence 1 12344566778887776665554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=1.3e-10 Score=99.70 Aligned_cols=123 Identities=12% Similarity=0.083 Sum_probs=96.3
Q ss_pred ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCC-CCcceEeeeeecccccCCCCCCCCCCCcEEecC
Q 040680 294 SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPH-KNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLS 372 (459)
Q Consensus 294 ~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~ 372 (459)
.+.++.+|+.|++++|. +..+|.. ..+ ++|++|++++| ....++.++.+++|++|+++
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i~~~------------------~~~~~~L~~L~Ls~N--~l~~~~~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVIENL------------------GATLDQFDAIDFSDN--EIRKLDGFPLLRRLKTLLVN 72 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSCCCG------------------GGGTTCCSEEECCSS--CCCEECCCCCCSSCCEEECC
T ss_pred hcCCcCCceEEEeeCCC-CchhHHh------------------hhcCCCCCEEECCCC--CCCcccccccCCCCCEEECC
Confidence 46788999999999975 6677532 233 49999999999 34445779999999999999
Q ss_pred CCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccc--ccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC--
Q 040680 373 WLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLR--RIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-- 448 (459)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-- 448 (459)
++ .++.++...+. .+++|+.|+|++| .+..++. ... .+++|+.|++++|+ +..+|.
T Consensus 73 ~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~i~~~~~~~~l~--------------~l~~L~~L~l~~N~-i~~~~~~~ 132 (176)
T 1a9n_A 73 NN-RICRIGEGLDQ---ALPDLTELILTNN-SLVELGDLDPLA--------------SLKSLTYLCILRNP-VTNKKHYR 132 (176)
T ss_dssp SS-CCCEECSCHHH---HCTTCCEEECCSC-CCCCGGGGGGGG--------------GCTTCCEEECCSSG-GGGSTTHH
T ss_pred CC-cccccCcchhh---cCCCCCEEECCCC-cCCcchhhHhhh--------------cCCCCCEEEecCCC-CCCcHhHH
Confidence 86 57777754433 7889999999995 6788876 444 79999999999994 667775
Q ss_pred ------CCCCccceee
Q 040680 449 ------YPYLETDWRI 458 (459)
Q Consensus 449 ------l~~L~~~L~i 458 (459)
+|+|+ .|.+
T Consensus 133 ~~~~~~l~~L~-~Ld~ 147 (176)
T 1a9n_A 133 LYVIYKVPQVR-VLDF 147 (176)
T ss_dssp HHHHHHCTTCS-EETT
T ss_pred HHHHHHCCccc-eeCC
Confidence 78888 7754
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.07 E-value=3.1e-10 Score=113.58 Aligned_cols=132 Identities=17% Similarity=0.041 Sum_probs=99.8
Q ss_pred CCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecc
Q 040680 274 KLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGV 352 (459)
Q Consensus 274 ~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 352 (459)
.+++|++|++++|.+..+ |..++++++|++|++++|......|..+ .+.+++|++|++++|
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----------------~~~l~~L~~L~Ls~N-- 179 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------AASSDTLEHLNLQYN-- 179 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----------------GGGTTTCCEEECTTS--
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----------------hhhCCcccEEecCCC--
Confidence 456788888888887766 4577788888888888865333333221 125689999999999
Q ss_pred cccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCcc
Q 040680 353 RCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCL 432 (459)
Q Consensus 353 ~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 432 (459)
....+|.+..+++|+.|+++++ .++.++..+ . .+++|+.|+|++| .+..+|..+. .+++|
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~---~l~~L~~L~Ls~N-~l~~lp~~l~--------------~l~~L 239 (487)
T 3oja_A 180 FIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEF-Q---SAAGVTWISLRNN-KLVLIEKALR--------------FSQNL 239 (487)
T ss_dssp CCCEEECCCCCTTCCEEECCSS-CCCEECGGG-G---GGTTCSEEECTTS-CCCEECTTCC--------------CCTTC
T ss_pred ccccccccccCCCCCEEECCCC-CCCCCCHhH-c---CCCCccEEEecCC-cCcccchhhc--------------cCCCC
Confidence 4455566778999999999986 577777653 3 7889999999995 6888887765 78999
Q ss_pred ceeeecCCCCC
Q 040680 433 SELDISGCPKL 443 (459)
Q Consensus 433 ~~L~l~~c~~l 443 (459)
+.|++++|+..
T Consensus 240 ~~L~l~~N~l~ 250 (487)
T 3oja_A 240 EHFDLRGNGFH 250 (487)
T ss_dssp CEEECTTCCBC
T ss_pred CEEEcCCCCCc
Confidence 99999999654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=1.4e-10 Score=98.66 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=93.8
Q ss_pred cCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccc-cccccccCCCCCcchHHHhhccCCCCCcceE
Q 040680 267 IVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAE-LPRILEGCGHTDVDVEALLDDLKPHKNLREL 345 (459)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~-lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 345 (459)
.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|. +.. +|..+ +.+++|++|
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----------------~~l~~L~~L 100 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLA-----------------EKLPNLTHL 100 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHH-----------------HHCTTCCEE
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHH-----------------hhCCCCCEE
Confidence 5777789999999999999999988 789999999999999977 454 65433 345899999
Q ss_pred eeeeecccccCC---CCCCCCCCCcEEecCCCcCcceecc---ccCcCCCCCCCcCEEeecCCCCCCccccc
Q 040680 346 SIFYFGVRCQYI---PQLEQLPSLKSLTLSWLDALVYICF---SSIASRTRFSSLEYISILGCPELKGWLRR 411 (459)
Q Consensus 346 ~l~~~~~~~~~l---~~l~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 411 (459)
++++| ....+ +.++.+++|++|+++++ .+..++. ..+. .+++|+.|++++| ...++|..
T Consensus 101 ~Ls~N--~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~---~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGN--KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFK---LLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp ECBSS--SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHT---TCSSCCEETTEET-TSCBCCSS
T ss_pred eccCC--ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHH---hCccCcEecCCCC-Chhhcccc
Confidence 99999 34443 35889999999999986 4655554 2223 7899999999997 46666644
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=1.3e-09 Score=110.51 Aligned_cols=130 Identities=23% Similarity=0.275 Sum_probs=100.6
Q ss_pred ccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceE
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLREL 345 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 345 (459)
..+|..+. ++|++|++++|.++.+| +.+++|++|++++|+ +..+|. +.+ +|++|
T Consensus 72 ~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~------------------l~~--~L~~L 125 (571)
T 3cvr_A 72 SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE------------------LPA--SLKHL 125 (571)
T ss_dssp SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC------------------CCT--TCCEE
T ss_pred CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch------------------hhc--CCCEE
Confidence 34666553 78999999999999999 468999999999975 666773 222 99999
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIE 425 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (459)
++++| ....+|. .+++|+.|+++++ .++.+|. .+++|+.|+|++| .+..+|. +
T Consensus 126 ~Ls~N--~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~-------~l~~L~~L~Ls~N-~L~~lp~-l------------- 178 (571)
T 3cvr_A 126 DVDNN--QLTMLPE--LPALLEYINADNN-QLTMLPE-------LPTSLEVLSVRNN-QLTFLPE-L------------- 178 (571)
T ss_dssp ECCSS--CCSCCCC--CCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCSCCCC-C-------------
T ss_pred ECCCC--cCCCCCC--cCccccEEeCCCC-ccCcCCC-------cCCCcCEEECCCC-CCCCcch-h-------------
Confidence 99999 4455776 7899999999986 4665553 4689999999996 5777665 2
Q ss_pred CCCCCccceeeecCCCCCCCCCCCC-CC
Q 040680 426 PPSFPCLSELDISGCPKLILIPLYP-YL 452 (459)
Q Consensus 426 ~~~l~~L~~L~l~~c~~l~~lP~l~-~L 452 (459)
. ++|+.|++++| .+..+|.++ +|
T Consensus 179 --~-~~L~~L~Ls~N-~L~~lp~~~~~L 202 (571)
T 3cvr_A 179 --P-ESLEALDVSTN-LLESLPAVPVRN 202 (571)
T ss_dssp --C-TTCCEEECCSS-CCSSCCCCC---
T ss_pred --h-CCCCEEECcCC-CCCchhhHHHhh
Confidence 3 79999999999 788998833 45
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.4e-12 Score=114.39 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=84.8
Q ss_pred ccCccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceE
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLREL 345 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 345 (459)
..+|..+..+++|++|++++|.+..+| .+.++++|++|++++|. +..+|..+ ..+++|++|
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~-----------------~~~~~L~~L 98 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLD-----------------AVADTLEEL 98 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHH-----------------HHHHHCSEE
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchh-----------------hcCCcCCEE
Confidence 345557888899999999999988888 88899999999999865 66777543 223789999
Q ss_pred eeeeecccccCCCCCCCCCCCcEEecCCCcCcceecc-ccCcCCCCCCCcCEEeecCCC
Q 040680 346 SIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICF-SSIASRTRFSSLEYISILGCP 403 (459)
Q Consensus 346 ~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~L~~~~ 403 (459)
++++| ....+|.++.+++|++|+++++ .+..++. ..+. .+++|+.|++++|+
T Consensus 99 ~L~~N--~l~~l~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~---~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 99 WISYN--QIASLSGIEKLVNLRVLYMSNN-KITNWGEIDKLA---ALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEE--ECCCHHHHHHHHHSSEEEESEE-ECCCHHHHHHHT---TTTTCSEEEECSCH
T ss_pred ECcCC--cCCcCCccccCCCCCEEECCCC-cCCchhHHHHHh---cCCCCCEEEecCCc
Confidence 99998 4444566788889999999875 4554443 2222 78889999998863
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=1.6e-09 Score=92.80 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=90.7
Q ss_pred cccCccccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+ ..+|++|++++|.+..+|. .++++++|++|++++|. +..+|.. .++.+++|+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------------~~~~l~~L~ 79 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDG----------------VFDKLTKLT 79 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT----------------TTTTCTTCC
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChh----------------HccCCCccC
Confidence 44456443 3689999999999998876 46899999999999975 7777643 467789999
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCC
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCP 403 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 403 (459)
+|++++| ....++. ++.+++|++|+++++ .++.++...+. .+++|+.|+|++++
T Consensus 80 ~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 80 ILYLHEN--KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFD---RLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT---TCTTCCEEECCSSC
T ss_pred EEECCCC--CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhc---CCcccCEEEecCCC
Confidence 9999999 3444443 789999999999986 67777765544 78999999999975
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=4.5e-10 Score=93.37 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=92.4
Q ss_pred cccCCCeeccCCCcccc--ccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCCCCCCCCCCcEEecCCC
Q 040680 297 KLLNLETPDCNGCRSLA--ELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWL 374 (459)
Q Consensus 297 ~l~~L~~L~l~~~~~l~--~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~ 374 (459)
..++|+.|++++|. +. .+|. .++.+++|++|++++| ....++.++.+++|++|+++++
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~-----------------~~~~l~~L~~L~l~~n--~l~~~~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEG-----------------LTDEFEELEFLSTINV--GLTSIANLPKLNKLKKLELSDN 74 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCS-----------------CCTTCTTCCEEECTTS--CCCCCTTCCCCTTCCEEECCSS
T ss_pred CCccCeEEEccCCc-CChhHHHH-----------------HHhhcCCCcEEECcCC--CCCCchhhhcCCCCCEEECCCC
Confidence 35789999999986 44 6664 3466799999999999 3444477999999999999986
Q ss_pred cCcce-eccccCcCCCCCCCcCEEeecCCCCCCccc--cccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC---
Q 040680 375 DALVY-ICFSSIASRTRFSSLEYISILGCPELKGWL--RRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL--- 448 (459)
Q Consensus 375 ~~l~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~--- 448 (459)
. +.. ++... . .+++|+.|++++| .+..++ .... .+++|++|++++| .+..+|.
T Consensus 75 ~-i~~~~~~~~-~---~l~~L~~L~ls~N-~i~~~~~~~~~~--------------~l~~L~~L~l~~N-~l~~~~~~~~ 133 (149)
T 2je0_A 75 R-VSGGLEVLA-E---KCPNLTHLNLSGN-KIKDLSTIEPLK--------------KLENLKSLDLFNC-EVTNLNDYRE 133 (149)
T ss_dssp C-CCSCTHHHH-H---HCTTCCEEECTTS-CCCSHHHHGGGG--------------GCTTCCEEECTTC-GGGGSTTHHH
T ss_pred c-ccchHHHHh-h---hCCCCCEEECCCC-cCCChHHHHHHh--------------hCCCCCEEeCcCC-cccchHHHHH
Confidence 4 444 44322 2 5889999999996 577765 4455 7999999999999 5666664
Q ss_pred -----CCCCccceee
Q 040680 449 -----YPYLETDWRI 458 (459)
Q Consensus 449 -----l~~L~~~L~i 458 (459)
+++|+ .|++
T Consensus 134 ~~~~~l~~L~-~L~l 147 (149)
T 2je0_A 134 NVFKLLPQLT-YLDG 147 (149)
T ss_dssp HHHHHCTTCC-EETT
T ss_pred HHHHHCCCcc-cccC
Confidence 78888 8765
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=2.2e-10 Score=120.20 Aligned_cols=127 Identities=14% Similarity=0.056 Sum_probs=91.0
Q ss_pred eecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCCC-
Q 040680 281 LNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIPQ- 359 (459)
Q Consensus 281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~- 359 (459)
++++.+.+...|..+..+++|+.|+|++|. +..+|..+ ..+++|++|+|++| ....+|.
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-----------------~~l~~L~~L~Ls~N--~l~~lp~~ 265 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANI-----------------FKYDFLTRLYLNGN--SLTELPAE 265 (727)
T ss_dssp ----------------CCCCCCEEECTTSC-CSCCCGGG-----------------GGCCSCSCCBCTTS--CCSCCCGG
T ss_pred ccccccceecChhhhccCCCCcEEECCCCC-CCCCChhh-----------------cCCCCCCEEEeeCC--cCcccChh
Confidence 344455556567789999999999999976 67888653 35699999999999 4446665
Q ss_pred CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccceeeecC
Q 040680 360 LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLSELDISG 439 (459)
Q Consensus 360 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 439 (459)
|+.|++|++|+|+++ .++.+|..+ + .+++|++|+|++| .+..+|..+. .+++|+.|+|++
T Consensus 266 ~~~l~~L~~L~Ls~N-~l~~lp~~~-~---~l~~L~~L~L~~N-~l~~lp~~~~--------------~l~~L~~L~L~~ 325 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHN-RLTSLPAEL-G---SCFQLKYFYFFDN-MVTTLPWEFG--------------NLCNLQFLGVEG 325 (727)
T ss_dssp GGGGTTCCEEECTTS-CCSSCCSSG-G---GGTTCSEEECCSS-CCCCCCSSTT--------------SCTTCCCEECTT
T ss_pred hhCCCCCCEEeCcCC-cCCccChhh-c---CCCCCCEEECCCC-CCCccChhhh--------------cCCCccEEeCCC
Confidence 999999999999986 577777654 3 7899999999996 7889988776 899999999999
Q ss_pred CCCCCCCC
Q 040680 440 CPKLILIP 447 (459)
Q Consensus 440 c~~l~~lP 447 (459)
|+..+.+|
T Consensus 326 N~l~~~~p 333 (727)
T 4b8c_D 326 NPLEKQFL 333 (727)
T ss_dssp SCCCSHHH
T ss_pred CccCCCCh
Confidence 96544444
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.00 E-value=3.4e-11 Score=117.02 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=96.5
Q ss_pred cccCCCccceEeecCCCCccc-----cCcccccccCCCeeccCCCccc----ccccccc------------ccCC-----
Q 040680 270 SSISKLKHLWYLNLPGNGITK-----LPNSVSKLLNLETPDCNGCRSL----AELPRIL------------EGCG----- 323 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l----~~lp~~~------------~~~~----- 323 (459)
..+..+++|++|++++|.+.. +|..+.++++|++|++++|..- ..++..+ ..+.
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 345677778888888777664 6667777778888888776531 1222211 1111
Q ss_pred CCCcch---HHHhhccCCCCCcceEeeeeeccccc----CCC-CCCCCCCCcEEecCCCcCc----ceeccccCcCCCCC
Q 040680 324 HTDVDV---EALLDDLKPHKNLRELSIFYFGVRCQ----YIP-QLEQLPSLKSLTLSWLDAL----VYICFSSIASRTRF 391 (459)
Q Consensus 324 ~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~----~l~-~l~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~l 391 (459)
...... ..+...++.+++|++|++++|..... ..+ .+..+++|++|++++|.-- ..++... . .+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~---~~ 243 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-K---SW 243 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-G---GC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-c---cC
Confidence 111221 22335666677888888887722111 234 5677778888888876421 3333322 2 56
Q ss_pred CCcCEEeecCCCCCCcc-----ccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCC-----CCC-----CCCCccce
Q 040680 392 SSLEYISILGCPELKGW-----LRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLIL-----IPL-----YPYLETDW 456 (459)
Q Consensus 392 ~~L~~L~L~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lP~-----l~~L~~~L 456 (459)
++|+.|+|++|. +... +..... ..+++|+.|+|++| .+.. +|. +++|+ .|
T Consensus 244 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~------------~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~-~L 308 (386)
T 2ca6_A 244 PNLRELGLNDCL-LSARGAAAVVDAFSK------------LENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLL-FL 308 (386)
T ss_dssp TTCCEEECTTCC-CCHHHHHHHHHHHHT------------CSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCC-EE
T ss_pred CCcCEEECCCCC-CchhhHHHHHHHHhh------------ccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCce-EE
Confidence 778888887763 4332 222210 03677777777777 3444 665 56777 66
Q ss_pred ee
Q 040680 457 RI 458 (459)
Q Consensus 457 ~i 458 (459)
.+
T Consensus 309 ~l 310 (386)
T 2ca6_A 309 EL 310 (386)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 134
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.00 E-value=1.5e-09 Score=112.24 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=78.3
Q ss_pred hhccCCCCCcceEeeeeecccccCCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc
Q 040680 333 LDDLKPHKNLRELSIFYFGVRCQYIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR 411 (459)
Q Consensus 333 ~~~l~~l~~L~~L~l~~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 411 (459)
+..+..+++|+.|++++|.......|. |..+++|++|++++| .++.+++..+. .+++|+.|+|+++ ++..++..
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~---~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN---SLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECTTS-CCCBCCCG
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHc---CCCCCCEEECCCC-cCCCCChh
Confidence 445667788999999887322333444 889999999999986 57777665555 7889999999985 67777654
Q ss_pred cccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----C-CCCccceee
Q 040680 412 IDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----Y-PYLETDWRI 458 (459)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l-~~L~~~L~i 458 (459)
... .+++|+.|+|++| ++..+|. + ++|+ .|.+
T Consensus 537 ~~~-------------~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~-~L~L 574 (635)
T 4g8a_A 537 PYK-------------CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLA-FLNL 574 (635)
T ss_dssp GGT-------------TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCC-EEEC
T ss_pred HHh-------------CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCC-EEEe
Confidence 321 7899999999999 5666554 4 4688 7776
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.98 E-value=1e-08 Score=90.98 Aligned_cols=148 Identities=15% Similarity=0.017 Sum_probs=93.4
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccC-CC-eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNH-FD-LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.|+|++|+|||++|+.+++ ..... +. ..+.++.+.......+...+....... ....++
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 102 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA---------------PIGGAP 102 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC---------------CSTTCS
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhccc---------------CCCccC
Confidence 489999999999999999998 33222 22 234444433333222221111111000 011356
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHHHccCCCCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILMAFEQGVEPR 151 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~~~~~~~~~~ 151 (459)
+.+||+||++.........+...+.....+..+|+||+...... +++.++..+++...+...+...
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~- 181 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI- 181 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 88999999987665666677777776677788999887653211 7899999999988765333211
Q ss_pred CchHHHHHHHHHhhcCCChHHHHH
Q 040680 152 GSRLVEIGKDIVEKCVGVPLAIRT 175 (459)
Q Consensus 152 ~~~~~~~~~~i~~~~~glPLai~~ 175 (459)
-++....+++.++|.|..+..
T Consensus 182 ---~~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 182 ---TEDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp ---CHHHHHHHHHHHTTCHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCHHHHHH
Confidence 234567788999999985443
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=6.1e-09 Score=100.82 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=100.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCC---CeEEEEEeCCcccHHHHHHHHHHHhccccC-CccCHHHHHHHHHh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHF---DLRIWMCISDIFYHKAMLEKIIAFVAYREF-SKHDLNKLQEVHHQ 79 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~ 79 (459)
..+.+.|+|++|+||||||+.+++ .....+ ..++|++.....+...+...++..++.... ...+.......+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 357899999999999999999998 444332 356788766666666777777776653221 12234444444444
Q ss_pred hcC--CceEEEEEeCCCCCC----hhhHHHHHHhhcc-CCCCcEEEEeecchhhhc------------------cCChhh
Q 040680 80 KID--RKKYLLVLDDVWIEN----CDEWLKLETLLRN-SAGGSNIIVATRSERVAR------------------GLSKGQ 134 (459)
Q Consensus 80 ~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iiiTtr~~~~~~------------------~l~~~e 134 (459)
.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+...... +++.++
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 443 458999999995421 1233344333322 234566788887653221 899999
Q ss_pred hHHHHHHHHccCCCCCCCchHHHHHHHHHhhcC---CChHH
Q 040680 135 SWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCV---GVPLA 172 (459)
Q Consensus 135 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---glPLa 172 (459)
..+++...+....... .-..+....+++.++ |.|..
T Consensus 202 ~~~il~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 202 LEDILTKRAQMAFKPG--VLPDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp HHHHHHHHHHHHBCSS--CSCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHHhcCCHHH
Confidence 9999987653211001 112345566777776 88873
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.95 E-value=1.1e-08 Score=99.15 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=107.1
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC-CeEEEEEeCCcccHHHHHHHHHHHhccccC-CccCHHHHHHHHHhhc--
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF-DLRIWMCISDIFYHKAMLEKIIAFVAYREF-SKHDLNKLQEVHHQKI-- 81 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l-- 81 (459)
+.+.|+|++|+||||+|+.+++ ...... ..++|++.....+...+...++..++.... ...+.......+...+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999998 444332 356788877777788888888888864322 1223444555544444
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhccCC----CCcEEEEeecchhhhc------------------cCChhhhHHHH
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLRNSA----GGSNIIVATRSERVAR------------------GLSKGQSWSLF 139 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~iiiTtr~~~~~~------------------~l~~~ea~~Lf 139 (459)
.+++.+||+|+++..+......+...+.... .+..+|++|++..... +++.++..+++
T Consensus 123 ~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l 202 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL 202 (389)
T ss_dssp TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHH
Confidence 3568899999997765555556655553322 4677888877653211 78889999999
Q ss_pred HHHHccCCCCCCCchHHHHHHHHHhhc---------CCChHH
Q 040680 140 ILMAFEQGVEPRGSRLVEIGKDIVEKC---------VGVPLA 172 (459)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~glPLa 172 (459)
...+....... .-.++....+++.+ +|.|-.
T Consensus 203 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 203 LDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp HHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred HHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 87764211000 11234567788888 687643
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=3.3e-09 Score=90.27 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=71.3
Q ss_pred ceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCC
Q 040680 278 LWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYI 357 (459)
Q Consensus 278 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l 357 (459)
.+.++++++.++.+|..+. ++|++|++++|. +..++. ..++.+++|++|++++| ....+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~----------------~~~~~l~~L~~L~Ls~N--~l~~l 69 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEP----------------GVFDRLTQLTRLDLDNN--QLTVL 69 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCT----------------TTTTTCTTCSEEECCSS--CCCCC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccCh----------------hhhcCcccCCEEECCCC--CcCcc
Confidence 4678888888888887663 788888888855 666642 24566688888888888 34444
Q ss_pred CC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 358 PQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 358 ~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
|. |..+++|++|+++++ .++.++...+. .+++|+.|+|+++
T Consensus 70 ~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N 112 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD---NLKSLTHIWLLNN 112 (170)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS
T ss_pred ChhhccCCCCCCEEECCCC-ccCEeCHHHhc---CCCCCCEEEeCCC
Confidence 43 678888888888874 56666665444 6778888888874
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=3.4e-09 Score=90.48 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=71.5
Q ss_pred eEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC
Q 040680 279 WYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP 358 (459)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~ 358 (459)
+.++++++.+..+|..+. ++|++|++++|. +..+|. ..++.+++|++|++++| ....+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~----------------~~~~~l~~L~~L~Ls~N--~l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEP----------------GVFDHLVNLQQLYFNSN--KLTAIP 73 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCT----------------TTTTTCTTCCEEECCSS--CCCCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCH----------------HHhcCCcCCCEEECCCC--CCCccC
Confidence 678888888888887764 788888888865 566642 24566788888888888 444455
Q ss_pred C--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCC
Q 040680 359 Q--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGC 402 (459)
Q Consensus 359 ~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 402 (459)
. |+++++|++|+++++ .++.++...+. .+++|+.|+|+++
T Consensus 74 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~---~l~~L~~L~L~~N 115 (174)
T 2r9u_A 74 TGVFDKLTQLTQLDLNDN-HLKSIPRGAFD---NLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS
T ss_pred hhHhCCcchhhEEECCCC-ccceeCHHHhc---cccCCCEEEeCCC
Confidence 4 678888888888874 56666665444 6778888888875
No 140
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=2.3e-10 Score=111.17 Aligned_cols=173 Identities=20% Similarity=0.263 Sum_probs=86.5
Q ss_pred ccCccccCCCccceEeecCCCCccc-----cCcccccccCCCeeccCCCcccc----cccccc-------ccCC------
Q 040680 266 EIVPSSISKLKHLWYLNLPGNGITK-----LPNSVSKLLNLETPDCNGCRSLA----ELPRIL-------EGCG------ 323 (459)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~----~lp~~~-------~~~~------ 323 (459)
..++..+..+++|++|++++|.+.. ++..+.++++|++|++++|. +. .+|..+ ..+.
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3455556666677777777776553 33446667777777777652 22 233222 0110
Q ss_pred --CCCc---chHHHhhccCCCCCcceEeeeeecccc---cCCCC-CCCC---------CCCcEEecCCCcCcc--eeccc
Q 040680 324 --HTDV---DVEALLDDLKPHKNLRELSIFYFGVRC---QYIPQ-LEQL---------PSLKSLTLSWLDALV--YICFS 383 (459)
Q Consensus 324 --~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~l~~-l~~l---------~~L~~L~l~~~~~l~--~~~~~ 383 (459)
...+ ....++..+..+++|++|++++|.... ..++. +..+ ++|++|++++|. ++ .++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~- 178 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE- 178 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHH-
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHH-
Confidence 0000 012344445555666666666552110 01111 2222 566666666543 22 1110
Q ss_pred cCcCCCCCCCcCEEeecCCCCCCc------cccccccCCCCCCcCCCCCCCCCccceeeecCCCCC-----CCCCC----
Q 040680 384 SIASRTRFSSLEYISILGCPELKG------WLRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKL-----ILIPL---- 448 (459)
Q Consensus 384 ~~~~~~~l~~L~~L~L~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-----~~lP~---- 448 (459)
.......+++|++|+|++| .+.. .+..+. .+++|+.|+|++|. + ..+|.
T Consensus 179 l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~--------------~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLA--------------YCQELKVLDLQDNT-FTHLGSSALAIALKS 242 (386)
T ss_dssp HHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGG--------------GCTTCCEEECCSSC-CHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhh--------------cCCCccEEECcCCC-CCcHHHHHHHHHHcc
Confidence 0000115667777777775 3431 111333 67888999998885 4 44554
Q ss_pred CCCCccceee
Q 040680 449 YPYLETDWRI 458 (459)
Q Consensus 449 l~~L~~~L~i 458 (459)
+++|+ .|.+
T Consensus 243 ~~~L~-~L~L 251 (386)
T 2ca6_A 243 WPNLR-ELGL 251 (386)
T ss_dssp CTTCC-EEEC
T ss_pred CCCcC-EEEC
Confidence 67787 7765
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=4.6e-11 Score=104.60 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=94.1
Q ss_pred ceEeecCCC--CccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeeccccc
Q 040680 278 LWYLNLPGN--GITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQ 355 (459)
Q Consensus 278 L~~L~l~~~--~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 355 (459)
|....++++ .++.+|..++++++|++|++++|. +..+| .+ +.+++|++|++++| ...
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~-----------------~~l~~L~~L~l~~n--~l~ 83 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SL-----------------SGMENLRILSLGRN--LIK 83 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH-----------------HHHTTCCEEEEEEE--EEC
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc-----------------ccCCCCCEEECCCC--Ccc
Confidence 455555544 466777799999999999999965 67777 33 44589999999999 444
Q ss_pred CCCC-CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccc--ccccCCCCCCcCCCCCCCCCcc
Q 040680 356 YIPQ-LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLR--RIDNDADGSKIDMIEPPSFPCL 432 (459)
Q Consensus 356 ~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~L 432 (459)
.+|. +..+++|++|+++++ .++.++. +. .+++|+.|++++| .+..++. ... .+++|
T Consensus 84 ~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~---~l~~L~~L~l~~N-~i~~~~~~~~l~--------------~l~~L 142 (198)
T 1ds9_A 84 KIENLDAVADTLEELWISYN-QIASLSG--IE---KLVNLRVLYMSNN-KITNWGEIDKLA--------------ALDKL 142 (198)
T ss_dssp SCSSHHHHHHHCSEEEEEEE-ECCCHHH--HH---HHHHSSEEEESEE-ECCCHHHHHHHT--------------TTTTC
T ss_pred cccchhhcCCcCCEEECcCC-cCCcCCc--cc---cCCCCCEEECCCC-cCCchhHHHHHh--------------cCCCC
Confidence 6676 666799999999986 5666652 22 6789999999995 6777664 344 79999
Q ss_pred ceeeecCCCC
Q 040680 433 SELDISGCPK 442 (459)
Q Consensus 433 ~~L~l~~c~~ 442 (459)
++|++++|+.
T Consensus 143 ~~L~l~~N~l 152 (198)
T 1ds9_A 143 EDLLLAGNPL 152 (198)
T ss_dssp SEEEECSCHH
T ss_pred CEEEecCCcc
Confidence 9999999964
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=1.5e-08 Score=86.52 Aligned_cols=89 Identities=28% Similarity=0.338 Sum_probs=74.2
Q ss_pred cccCccccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .+|++|++++|.+..+ |..|+++++|++|++++|. +..+|.. .++.+++|+
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~----------------~~~~l~~L~ 84 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTG----------------VFDKLTQLT 84 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT----------------TTTTCTTCC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChh----------------HhCCcchhh
Confidence 556777664 7899999999999988 5579999999999999965 7888754 457789999
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCC
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWL 374 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~ 374 (459)
+|++++| ....+|. |..+++|++|+++++
T Consensus 85 ~L~L~~N--~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 85 QLDLNDN--HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp EEECCSS--CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCC--ccceeCHHHhccccCCCEEEeCCC
Confidence 9999999 4445554 899999999999985
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=2e-08 Score=85.34 Aligned_cols=89 Identities=29% Similarity=0.333 Sum_probs=73.8
Q ss_pred cccCccccCCCccceEeecCCCCcccc-CcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcc
Q 040680 265 IEIVPSSISKLKHLWYLNLPGNGITKL-PNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLR 343 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (459)
+..+|..+. .+|++|++++|.++.+ |..|.++++|++|++++|. +..+|.. .++.+++|+
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~----------------~f~~l~~L~ 81 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAG----------------VFDKLTQLT 81 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT----------------TTTTCTTCC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChh----------------hccCCCCCC
Confidence 556776653 7899999999999988 5579999999999999965 7788754 467789999
Q ss_pred eEeeeeecccccCCCC--CCCCCCCcEEecCCC
Q 040680 344 ELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWL 374 (459)
Q Consensus 344 ~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~ 374 (459)
+|++++| ....+|. |..+++|++|+++++
T Consensus 82 ~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 82 QLSLNDN--QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EEECCSS--CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCC--ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 9999999 4455553 899999999999985
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=4.6e-08 Score=92.19 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccC-C-CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc-CCc
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNH-F-DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI-DRK 84 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~ 84 (459)
+.|+|++|+|||++|+.+++ ..... + ..+++++.++...... .++++..+... ...+ .++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~--------------~~~~~~~~ 107 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQIKHFAQK--------------KLHLPPGK 107 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHHB--------------CCCCCTTC
T ss_pred EEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHHHHHHhc--------------cccCCCCC
Confidence 88999999999999999998 43221 1 1344444433222211 12222221100 0012 345
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHHHccCCCCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILMAFEQGVEPR 151 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~~~~~~~~~~ 151 (459)
+.++|+|+++.........+...+.....++.+|+||+...-.. +++.++..+++...+...+...
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~- 186 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY- 186 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 88999999977655556666666666667788888887643211 7899999999988764322211
Q ss_pred CchHHHHHHHHHhhcCCChH-HHHHHhhhh
Q 040680 152 GSRLVEIGKDIVEKCVGVPL-AIRTVGRLL 180 (459)
Q Consensus 152 ~~~~~~~~~~i~~~~~glPL-ai~~~~~~l 180 (459)
-++.+..+++.++|.|. |+..+....
T Consensus 187 ---~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 187 ---TNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp ---CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13456789999999994 555554433
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.6e-08 Score=92.73 Aligned_cols=97 Identities=24% Similarity=0.346 Sum_probs=46.7
Q ss_pred eecCCC-CccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeecccccCCC-
Q 040680 281 LNLPGN-GITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQYIP- 358 (459)
Q Consensus 281 L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~- 358 (459)
++.+++ .+..+|. +..+++|++|+|++++.+..+|.. .|+.|++|++|+|++|. ...++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~----------------~~~~l~~L~~L~l~~N~--l~~~~~ 73 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR----------------DLRGLGELRNLTIVKSG--LRFVAP 73 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG----------------GSCSCCCCSEEECCSSC--CCEECT
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh----------------HhccccCCCEEECCCCc--cceeCH
Confidence 344554 4555555 555555555555542334444422 34444555555555552 22222
Q ss_pred -CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecC
Q 040680 359 -QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILG 401 (459)
Q Consensus 359 -~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~ 401 (459)
.|+.|++|++|+|+++ .+..++...+. .++ |+.|+|.+
T Consensus 74 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~~~-L~~l~l~~ 112 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFN-ALESLSWKTVQ---GLS-LQELVLSG 112 (347)
T ss_dssp TGGGSCSCCCEEECCSS-CCSCCCSTTTC---SCC-CCEEECCS
T ss_pred HHhcCCcCCCEEeCCCC-ccceeCHHHcc---cCC-ceEEEeeC
Confidence 2455555555555552 44444443332 222 55555555
No 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=5.4e-09 Score=100.47 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=84.7
Q ss_pred cCCCccceEeecCCCCccccC-----ccccccc-CCCeeccCCCcccccc-cccccc--------CC-----CCC---cc
Q 040680 272 ISKLKHLWYLNLPGNGITKLP-----NSVSKLL-NLETPDCNGCRSLAEL-PRILEG--------CG-----HTD---VD 328 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~~lp-----~~i~~l~-~L~~L~l~~~~~l~~l-p~~~~~--------~~-----~~~---~~ 328 (459)
+....+|++|++++|.+...+ ..+.+++ +|++|++++|. +... +..+.. +. ... ..
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 344445677777777666554 3555666 67777776654 3322 221111 00 000 01
Q ss_pred hHHHhhccCCC-CCcceEeeeeecccccCCCC------CCCC-CCCcEEecCCCcCcceeccccCc-CCCCC-CCcCEEe
Q 040680 329 VEALLDDLKPH-KNLRELSIFYFGVRCQYIPQ------LEQL-PSLKSLTLSWLDALVYICFSSIA-SRTRF-SSLEYIS 398 (459)
Q Consensus 329 ~~~~~~~l~~l-~~L~~L~l~~~~~~~~~l~~------l~~l-~~L~~L~l~~~~~l~~~~~~~~~-~~~~l-~~L~~L~ 398 (459)
...+...+..+ ++|++|++++|. ....+. +..+ ++|++|++++| .++......+. ....+ ++|++|+
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEee
Confidence 12333445555 677788777772 222221 3332 47888888775 33321111000 00123 3788888
Q ss_pred ecCCCCCCcccc-ccccCCCCCCcCCCCCCCC-CccceeeecCCCCCCC-----CCC----C-CCCccceee
Q 040680 399 ILGCPELKGWLR-RIDNDADGSKIDMIEPPSF-PCLSELDISGCPKLIL-----IPL----Y-PYLETDWRI 458 (459)
Q Consensus 399 L~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~-----lP~----l-~~L~~~L~i 458 (459)
|++| .+..... .+... . ..+ ++|+.|++++| .++. +|. + ++|+ .|.+
T Consensus 174 Ls~n-~l~~~~~~~l~~~-----l-----~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~-~L~L 232 (362)
T 3goz_A 174 LRGN-NLASKNCAELAKF-----L-----ASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVV-SLNL 232 (362)
T ss_dssp CTTS-CGGGSCHHHHHHH-----H-----HTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCC-EEEC
T ss_pred ecCC-CCchhhHHHHHHH-----H-----HhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCce-EEEC
Confidence 8876 3433321 11100 0 034 48999999988 4665 554 2 3788 7765
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.59 E-value=1.7e-08 Score=96.95 Aligned_cols=96 Identities=16% Similarity=0.012 Sum_probs=45.3
Q ss_pred HHhhccCCCC-CcceEeeeeecccccCCC----CCCCC-CCCcEEecCCCcCcce-----eccccCcCCCCCCCcCEEee
Q 040680 331 ALLDDLKPHK-NLRELSIFYFGVRCQYIP----QLEQL-PSLKSLTLSWLDALVY-----ICFSSIASRTRFSSLEYISI 399 (459)
Q Consensus 331 ~~~~~l~~l~-~L~~L~l~~~~~~~~~l~----~l~~l-~~L~~L~l~~~~~l~~-----~~~~~~~~~~~l~~L~~L~L 399 (459)
.+++.+..+. +|++|++++|........ .+..+ ++|++|++++|. ++. ++..... ..++|+.|+|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~---~~~~L~~L~L 232 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS---IPNHVVSLNL 232 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH---SCTTCCEEEC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc---CCCCceEEEC
Confidence 3444444444 677777766621111110 12333 367777777653 333 2211110 1346777777
Q ss_pred cCCCCCCcccccc-ccCCCCCCcCCCCCCCCCccceeeecCCC
Q 040680 400 LGCPELKGWLRRI-DNDADGSKIDMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 400 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 441 (459)
++| .+...+... ... ...+++|+.|++++|.
T Consensus 233 s~N-~l~~~~~~~l~~~----------~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 233 CLN-CLHGPSLENLKLL----------KDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CSS-CCCCCCHHHHHHT----------TTTTTTCSEEEEEHHH
T ss_pred cCC-CCCcHHHHHHHHH----------HhcCCCccEEEeccCC
Confidence 764 344432210 000 0056778888887774
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=2.5e-07 Score=87.44 Aligned_cols=95 Identities=16% Similarity=0.010 Sum_probs=74.6
Q ss_pred CCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcC-EEeecCCCCCCccccccccC
Q 040680 339 HKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLE-YISILGCPELKGWLRRIDND 415 (459)
Q Consensus 339 l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~ 415 (459)
+++|++|++.+| ....+|. |..+++|+.|++.. +++.++...|. .+++|+ .+.+.+ ++..++.....
T Consensus 225 ~~~L~~l~L~~n--~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~---~~~~L~~~l~l~~--~l~~I~~~aF~- 294 (329)
T 3sb4_A 225 MPNLVSLDISKT--NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFS---NCGRLAGTLELPA--SVTAIEFGAFM- 294 (329)
T ss_dssp CTTCCEEECTTB--CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEEEECT--TCCEECTTTTT-
T ss_pred cCCCeEEECCCC--CcceecHhhhhCCCCCCEEECCc--ccceehHHHhh---CChhccEEEEEcc--cceEEchhhhh-
Confidence 688999999887 4555554 89999999999986 48888887665 788999 999986 67777654332
Q ss_pred CCCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCcccee
Q 040680 416 ADGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWR 457 (459)
Q Consensus 416 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~ 457 (459)
.+++|+.|+++++ .++.++. +++|+ .|.
T Consensus 295 ------------~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~-~ly 327 (329)
T 3sb4_A 295 ------------GCDNLRYVLATGD-KITTLGDELFGNGVPSK-LIY 327 (329)
T ss_dssp ------------TCTTEEEEEECSS-CCCEECTTTTCTTCCCC-EEE
T ss_pred ------------CCccCCEEEeCCC-ccCccchhhhcCCcchh-hhc
Confidence 7899999999877 6888887 66677 654
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=6.2e-07 Score=84.51 Aligned_cols=148 Identities=14% Similarity=-0.004 Sum_probs=91.2
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.|+|++|+|||++|+.+++ ...... ...+.++.++...... ....+...... .....++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~ 110 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINV-IREKVKEFART--------------KPIGGAS 110 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHT-THHHHHHHHHS--------------CCGGGCS
T ss_pred eEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchHH-HHHHHHHHHhh--------------CCcCCCC
Confidence 388999999999999999998 432221 1233444333211111 11111110000 0011256
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHHHccCCCCCC
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILMAFEQGVEPR 151 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~~~~~~~~~~ 151 (459)
+.++|+|+++.........+...+.....++++|+||....... +++.++..+++...+...+..
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-- 188 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 188 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE--
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC--
Confidence 78999999987665667777777776677888888887643211 789999999998876543321
Q ss_pred CchHHHHHHHHHhhcCCChHHHHH
Q 040680 152 GSRLVEIGKDIVEKCVGVPLAIRT 175 (459)
Q Consensus 152 ~~~~~~~~~~i~~~~~glPLai~~ 175 (459)
--++....+++.++|.|-.+..
T Consensus 189 --~~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 189 --LTEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp --ECHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCHHHHHHHHHHCCCCHHHHHH
Confidence 1234567888999999985543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=1.8e-07 Score=89.20 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=73.3
Q ss_pred cccCccccCCCccceEeecCC-CCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCc
Q 040680 265 IEIVPSSISKLKHLWYLNLPG-NGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNL 342 (459)
Q Consensus 265 ~~~lp~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (459)
+..+|. +..+.+|++|+|++ |.+..+|+ .|++|++|++|+|++|. +..+|.. .|+.|++|
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~----------------~~~~l~~L 82 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPD----------------AFHFTPRL 82 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTT----------------GGGSCSCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHH----------------HhcCCcCC
Confidence 566888 99999999999996 99999985 79999999999999975 7777643 56777999
Q ss_pred ceEeeeeecccccCCCC--CCCCCCCcEEecCCC
Q 040680 343 RELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWL 374 (459)
Q Consensus 343 ~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~ 374 (459)
++|+|++| ....+|. +..++ |+.|++.++
T Consensus 83 ~~L~l~~N--~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 83 SRLNLSFN--ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CEEECCSS--CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CEEeCCCC--ccceeCHHHcccCC-ceEEEeeCC
Confidence 99999999 4455553 55555 999999875
No 151
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.48 E-value=7.3e-09 Score=102.87 Aligned_cols=155 Identities=22% Similarity=0.237 Sum_probs=73.8
Q ss_pred CccccCCCccceEeecCCCCcccc-Cccc-----ccccCCCeeccCCCcccc----ccccccccCC--------CCCcch
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKL-PNSV-----SKLLNLETPDCNGCRSLA----ELPRILEGCG--------HTDVDV 329 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~l-p~~i-----~~l~~L~~L~l~~~~~l~----~lp~~~~~~~--------~~~~~~ 329 (459)
++..+..+++|++|++++|.+... +..+ ...++|++|++++|..-. .++..+..+. ......
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 455666677777777777765422 2211 124467777777664211 1222221111 111111
Q ss_pred ---HHHhhccC-CCCCcceEeeeeeccccc---CCCC-CCCCCCCcEEecCCCcCcceec-----cccCcCCCCCCCcCE
Q 040680 330 ---EALLDDLK-PHKNLRELSIFYFGVRCQ---YIPQ-LEQLPSLKSLTLSWLDALVYIC-----FSSIASRTRFSSLEY 396 (459)
Q Consensus 330 ---~~~~~~l~-~l~~L~~L~l~~~~~~~~---~l~~-l~~l~~L~~L~l~~~~~l~~~~-----~~~~~~~~~l~~L~~ 396 (459)
..+...+. .+++|++|++++|..... .++. +..+++|++|++++|. +.... ..... .+++|+.
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~---~~~~L~~ 260 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLH---PSSRLRT 260 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTS---TTCCCCE
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhc---CCCCceE
Confidence 11222221 234566666655521111 0122 4455667777776652 32211 11111 4567777
Q ss_pred EeecCCCCCCc-----cccccccCCCCCCcCCCCCCCCCccceeeecCCC
Q 040680 397 ISILGCPELKG-----WLRRIDNDADGSKIDMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 397 L~L~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 441 (459)
|++++| .+.. ++.... .+++|++|++++|+
T Consensus 261 L~L~~n-~l~~~~~~~l~~~l~--------------~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 261 LWIWEC-GITAKGCGDLCRVLR--------------AKESLKELSLAGNE 295 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHH--------------HCTTCCEEECTTCC
T ss_pred EECcCC-CCCHHHHHHHHHHHh--------------hCCCcceEECCCCC
Confidence 777776 4544 444433 46778888888773
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.47 E-value=2e-06 Score=82.70 Aligned_cols=162 Identities=12% Similarity=0.064 Sum_probs=90.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHH-------hcccc-CCccCHHHHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAF-------VAYRE-FSKHDLNKLQEV 76 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-------l~~~~-~~~~~~~~~~~~ 76 (459)
++.+.|+|++|+|||++|+.+++.......+.. ...... .....+... +.... ....+.....+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccCCCceEEecccccCCHHHHHHHHHH
Confidence 456889999999999999999873211111100 000000 000000000 00000 111222222222
Q ss_pred HHhh-cCCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHH
Q 040680 77 HHQK-IDRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILM 142 (459)
Q Consensus 77 l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~ 142 (459)
+... ..+++.++|+|+++..+......+...+.....+..+|++|.+..-.. +++.++..+++...
T Consensus 111 ~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp TTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred HhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHH
Confidence 2211 234678999999977665667777777776666777887776543211 78999999999876
Q ss_pred HccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHh
Q 040680 143 AFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVG 177 (459)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 177 (459)
+...+... ..+.+..+++.++|.|..+..+.
T Consensus 191 ~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 191 LNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 64322211 23456789999999998765443
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.2e-06 Score=77.76 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=80.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC-----CC--eEEEEEeCCcccHHHHHHHHHHHhccccCCcc-CHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH-----FD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKH-DLNKLQE 75 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~ 75 (459)
..+.+.|+|++|+|||++|+.+++. .... .. .+++++.....+...++..|++++.+...... ..+.+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 4567899999999999999999984 3221 11 45667766777888899999999965432222 2333333
Q ss_pred HHHhh--cCCceEEEEEeCCCCCChhhHHHHHHhhcc--CCC-CcEEEEeecch-----hhhc--------------cCC
Q 040680 76 VHHQK--IDRKKYLLVLDDVWIENCDEWLKLETLLRN--SAG-GSNIIVATRSE-----RVAR--------------GLS 131 (459)
Q Consensus 76 ~l~~~--l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~--~~~-gs~iiiTtr~~-----~~~~--------------~l~ 131 (459)
.+... -.++++++++|.++.-. .-+.+...+.+ ... ...||.++... .+.. +++
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt 199 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVD 199 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCC
T ss_pred HHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCC
Confidence 33332 24568999999996542 22333333321 111 22233333221 1110 788
Q ss_pred hhhhHHHHHHHHc
Q 040680 132 KGQSWSLFILMAF 144 (459)
Q Consensus 132 ~~ea~~Lf~~~~~ 144 (459)
.+|-.+++..++.
T Consensus 200 ~~el~~Il~~Rl~ 212 (318)
T 3te6_A 200 KNELQQMIITRLK 212 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999888887764
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=4.6e-07 Score=85.64 Aligned_cols=74 Identities=22% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcCCCCCCCCCccc-eeeecCCC
Q 040680 363 LPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKIDMIEPPSFPCLS-ELDISGCP 441 (459)
Q Consensus 363 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~ 441 (459)
+++|+.|++.++ .++.++...|. .+++|+.|+|.+ +++.++..... .+++|+ .|++.+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~---~~~~L~~l~l~~--ni~~I~~~aF~-------------~~~~L~~~l~l~~-- 283 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFA---QKKYLLKIKLPH--NLKTIGQRVFS-------------NCGRLAGTLELPA-- 283 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTT---TCTTCCEEECCT--TCCEECTTTTT-------------TCTTCCEEEEECT--
T ss_pred cCCCeEEECCCC-CcceecHhhhh---CCCCCCEEECCc--ccceehHHHhh-------------CChhccEEEEEcc--
Confidence 678999999864 58888877665 788999999986 37777765332 678899 999987
Q ss_pred CCCCCCC-----CCCCccceee
Q 040680 442 KLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 442 ~l~~lP~-----l~~L~~~L~i 458 (459)
.++.++. +++|+ .|.+
T Consensus 284 ~l~~I~~~aF~~c~~L~-~l~l 304 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLR-YVLA 304 (329)
T ss_dssp TCCEECTTTTTTCTTEE-EEEE
T ss_pred cceEEchhhhhCCccCC-EEEe
Confidence 6888876 66777 7665
No 155
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.43 E-value=1.3e-08 Score=100.98 Aligned_cols=139 Identities=20% Similarity=0.130 Sum_probs=83.5
Q ss_pred CCccceEeecCCCCccc-----cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccC-CCCCcceEee
Q 040680 274 KLKHLWYLNLPGNGITK-----LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLK-PHKNLRELSI 347 (459)
Q Consensus 274 ~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l 347 (459)
.+.+|++|++++|.++. ++..+.++++|++|++++|. +...+. ..+.+.+. ..++|++|++
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~------------~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGA------------RLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHH------------HHHHHHHTSTTCCCCEEEC
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHH------------HHHHHHhccCCccceeeEc
Confidence 45667777777776664 56666667777777777754 221110 12233332 3368888888
Q ss_pred eeeccccc---CCCC-CCCCCCCcEEecCCCcCcceeccccCcC-C-CCCCCcCEEeecCCCCCC-----ccccccccCC
Q 040680 348 FYFGVRCQ---YIPQ-LEQLPSLKSLTLSWLDALVYICFSSIAS-R-TRFSSLEYISILGCPELK-----GWLRRIDNDA 416 (459)
Q Consensus 348 ~~~~~~~~---~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~-~-~~l~~L~~L~L~~~~~l~-----~~~~~~~~~~ 416 (459)
++|..... .++. +..+++|++|+++++ .+.......+.. . ...++|++|+|++| .+. .++..+.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~--- 395 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL--- 395 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH---
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHH---
Confidence 88832221 1222 566788999999886 343322111110 0 02678999999987 455 4565555
Q ss_pred CCCCcCCCCCCCCCccceeeecCCC
Q 040680 417 DGSKIDMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~c~ 441 (459)
.+++|++|++++|+
T Consensus 396 -----------~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 396 -----------ANHSLRELDLSNNC 409 (461)
T ss_dssp -----------HCCCCCEEECCSSS
T ss_pred -----------hCCCccEEECCCCC
Confidence 67889999999884
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=9.7e-08 Score=80.44 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCcceEeeeeecccccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCC-CCCCcCEEeecCCCCCCccccc-cccCCC
Q 040680 340 KNLRELSIFYFGVRCQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRT-RFSSLEYISILGCPELKGWLRR-IDNDAD 417 (459)
Q Consensus 340 ~~L~~L~l~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~-~~~~~~ 417 (459)
.+|++|++++|.....-+..+..+++|++|+|++|..++.-.-..+.... ..++|+.|+|++|++++.--.. ..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~---- 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH---- 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG----
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh----
Confidence 58999999999544445666789999999999999877644332222100 1247999999999988763221 22
Q ss_pred CCCcCCCCCCCCCccceeeecCCCCCCC
Q 040680 418 GSKIDMIEPPSFPCLSELDISGCPKLIL 445 (459)
Q Consensus 418 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 445 (459)
.+++|+.|+|++|+.++.
T Consensus 137 ----------~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 ----------HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----------GCTTCCEEEEESCTTCCC
T ss_pred ----------cCCCCCEEECCCCCCCCc
Confidence 689999999999998885
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.37 E-value=5.2e-07 Score=80.96 Aligned_cols=140 Identities=9% Similarity=0.009 Sum_probs=79.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.+.|+|++|+|||++|+.+++ ........++|++....... +. + ..+.+ .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~------~~-----------------~-~~~~~-~ 103 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI------ST-----------------A-LLEGL-E 103 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS------CG-----------------G-GGTTG-G
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH------HH-----------------H-HHHhc-c
Confidence 357789999999999999999998 44443445677765432110 00 0 00111 3
Q ss_pred ceEEEEEeCCCCCChhh--HHHHHHhhccC-CCC-cEEEEeecchh---------hh------c-----cCChhhhHHHH
Q 040680 84 KKYLLVLDDVWIENCDE--WLKLETLLRNS-AGG-SNIIVATRSER---------VA------R-----GLSKGQSWSLF 139 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iiiTtr~~~---------~~------~-----~l~~~ea~~Lf 139 (459)
++.++|+||++...... ...+...+... ..+ .++|+||+... +. . +++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45689999996543222 33344433221 122 24777776321 11 1 67788888888
Q ss_pred HHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 140 ILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
...+...... -.++....+++.++|.+-.+.
T Consensus 184 ~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~ 214 (242)
T 3bos_A 184 QRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLF 214 (242)
T ss_dssp HHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHcCCC----CCHHHHHHHHHHccCCHHHHH
Confidence 7766432221 123445667777777665443
No 158
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.36 E-value=2.9e-08 Score=101.89 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCCccceeeecCCCCCCC------CCCCCCCccceee
Q 040680 428 SFPCLSELDISGCPKLIL------IPLYPYLETDWRI 458 (459)
Q Consensus 428 ~l~~L~~L~l~~c~~l~~------lP~l~~L~~~L~i 458 (459)
.+++|++|++++|. +.. +..+++|+ .|.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~-~L~l 321 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQ-RLWV 321 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCC-EEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcC-EEeC
Confidence 46889999999996 553 22378888 8875
No 159
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.36 E-value=4.3e-08 Score=100.54 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=14.4
Q ss_pred CccceEeecCCCCccccCcccccccCCCeeccC
Q 040680 275 LKHLWYLNLPGNGITKLPNSVSKLLNLETPDCN 307 (459)
Q Consensus 275 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 307 (459)
+++|++|++++|.+..+|..+.++++|+.|+++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 344444444444444444444444444444443
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.35 E-value=1.8e-06 Score=81.24 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=86.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.|.|+|++|+|||++|+.+++ ..... .++++........ +....+...+ .+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~~~---------------------~l~~~l~~~~-~~ 90 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEKPG---------------------DLAAILANSL-EE 90 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCSHH---------------------HHHHHHTTTC-CT
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCChH---------------------HHHHHHHHhc-cC
Confidence 46788999999999999999988 33322 2344433222211 1111111112 24
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCC------------------CCcEEEEeecchhhhc--------------cCCh
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSA------------------GGSNIIVATRSERVAR--------------GLSK 132 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiiTtr~~~~~~--------------~l~~ 132 (459)
+.+|++|++..........+...+.... ++..+|.||....... +++.
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCH
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCH
Confidence 5689999997765445555555444321 2345666665322111 7889
Q ss_pred hhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHHHHhh
Q 040680 133 GQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRTVGR 178 (459)
Q Consensus 133 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 178 (459)
+|..+++...+....... -++....+++.++|.|-.+..+..
T Consensus 171 ~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 171 EELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp HHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999988775433211 235578889999999987665543
No 161
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.33 E-value=1.9e-07 Score=95.71 Aligned_cols=103 Identities=17% Similarity=0.041 Sum_probs=49.9
Q ss_pred ccCCCCCcceEeeeeeccc---ccCCCCCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc--
Q 040680 335 DLKPHKNLRELSIFYFGVR---CQYIPQLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL-- 409 (459)
Q Consensus 335 ~l~~l~~L~~L~l~~~~~~---~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-- 409 (459)
.++.+++|++|+++.+... ......+..+++|+.|++.++ ....++... . .+++|++|+|++|. +....
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~-~---~~~~L~~L~Ls~~~-l~~~~~~ 311 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF-P---FAAQIRKLDLLYAL-LETEDHC 311 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG-G---GGGGCCEEEETTCC-CCHHHHH
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH-h---hcCCCcEEecCCCc-CCHHHHH
Confidence 3344466666666543111 111223556666666666653 222222211 1 45677777777765 32211
Q ss_pred cccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 410 RRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.... .+++|+.|++++|-.-..++. +++|+ .|++
T Consensus 312 ~~~~--------------~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~-~L~L 349 (592)
T 3ogk_B 312 TLIQ--------------KCPNLEVLETRNVIGDRGLEVLAQYCKQLK-RLRI 349 (592)
T ss_dssp HHHT--------------TCTTCCEEEEEGGGHHHHHHHHHHHCTTCC-EEEE
T ss_pred HHHH--------------hCcCCCEEeccCccCHHHHHHHHHhCCCCC-EEEe
Confidence 1112 567777777764422222222 56666 6654
No 162
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=2.1e-06 Score=73.40 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.......... ...+.+. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKDT-----KFLKTVL-----N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCCS-----HHHHHHH-----T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchHH-----HHHHHhc-----C
Confidence 5789999999999999999999832112222 233443 344444444433222111 2222222 3
Q ss_pred eEEEEEeCCCCCChhhH--HHHHHhhccC-CCCcEEEEeecch
Q 040680 85 KYLLVLDDVWIENCDEW--LKLETLLRNS-AGGSNIIVATRSE 124 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iiiTtr~~ 124 (459)
.-+||+|+++....+.| ..+...+... ..|..+|+||...
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45899999974222233 3344444332 3567888888644
No 163
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.26 E-value=9.4e-08 Score=98.03 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=34.5
Q ss_pred CCCCcCEEeecCCCCCCcc--ccccccCCCCCCcCCCCCCCCCccceeeecCCCCCCCCCC----CCCCccceee
Q 040680 390 RFSSLEYISILGCPELKGW--LRRIDNDADGSKIDMIEPPSFPCLSELDISGCPKLILIPL----YPYLETDWRI 458 (459)
Q Consensus 390 ~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~----l~~L~~~L~i 458 (459)
.+++|+.|+|++|. +... ..... .+++|++|++++|-.-..++. +++|+ .|++
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~--------------~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~-~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLC--------------QCPKLQRLWVLDYIEDAGLEVLASTCKDLR-ELRV 345 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHT--------------TCTTCCEEEEEGGGHHHHHHHHHHHCTTCC-EEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHh--------------cCCCcCEEeCcCccCHHHHHHHHHhCCCCC-EEEE
Confidence 46788888888876 4432 11122 689999999999822122332 77888 8765
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.22 E-value=6.8e-06 Score=77.02 Aligned_cols=143 Identities=14% Similarity=0.014 Sum_probs=86.2
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccc-cCCC-eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhh--c-C
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVK-NHFD-LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQK--I-D 82 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~-~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~ 82 (459)
+.++|++|+|||++|+.+++ ... ..+. ..+.++.+.... .............. + .
T Consensus 41 ~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 100 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERG------------------IDVVRHKIKEFARTAPIGG 100 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTC------------------TTTSSHHHHHHHHSCCSSS
T ss_pred EEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccC------------------hHHHHHHHHHHHhcCCCCC
Confidence 88999999999999999988 331 1111 223344332211 01111111111111 1 2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++.++|+|+++.........+...+.....++.+|+||....-.. +++.++..+++...+...+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999976554455556666655556778888876643211 789999999988776543321
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
. .++....+++.++|.+-.+.
T Consensus 181 i----~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 181 I----TEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp B----CHHHHHHHHHTTTTCHHHHH
T ss_pred C----CHHHHHHHHHHcCCCHHHHH
Confidence 1 23456788889999887543
No 165
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=2.5e-05 Score=73.81 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=59.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|+++.........+...+.....++.+|++|.+.. +.. +++.++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~ 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----T 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----C
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----C
Confidence 4577899999977665666777777776666777777777643 221 788999888887764 1
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIRTV 176 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~~~ 176 (459)
. .++.+..+++.++|.|..+..+
T Consensus 182 ~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1234577889999999765443
No 166
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=4.2e-06 Score=82.15 Aligned_cols=148 Identities=17% Similarity=0.100 Sum_probs=83.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
...+.|+|++|+||||||+.+++ .....++ .+++++.. .+..++...+... .. ..+.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 45688999999999999999998 5544432 34555432 2334444443221 11 12233333
Q ss_pred CceEEEEEeCCCCCCh--hhHHHHHHhhcc-CCCCcEEEEeecchhhh-----c---------------cCChhhhHHHH
Q 040680 83 RKKYLLVLDDVWIENC--DEWLKLETLLRN-SAGGSNIIVATRSERVA-----R---------------GLSKGQSWSLF 139 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtr~~~~~-----~---------------~l~~~ea~~Lf 139 (459)
.+.-+|++|+++.... ...+.+...+.. ...|..||+||.+.... . +++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3566999999965322 223334444332 24577889988763110 0 56777777777
Q ss_pred HHHHccCCCCCCCchHHHHHHHHHhhcCCChHHH
Q 040680 140 ILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 173 (459)
.+.+.......+ ++....|++.+.|.+-.+
T Consensus 273 ~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHHHTCCCC----TTHHHHHHHHCCSCHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHH
Confidence 766542221111 123556677777766433
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=1.8e-07 Score=89.29 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=19.9
Q ss_pred cCCCccceEeecCCCCcc----------ccCcccccccCCCeeccCCC
Q 040680 272 ISKLKHLWYLNLPGNGIT----------KLPNSVSKLLNLETPDCNGC 309 (459)
Q Consensus 272 ~~~l~~L~~L~l~~~~i~----------~lp~~i~~l~~L~~L~l~~~ 309 (459)
+.++++|+.|.+.....+ .++..+..+++|+.|++++|
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 444556666655443211 13334455667777777665
No 168
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=7.4e-06 Score=78.10 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhh-c------------cCChhhhHHHHHHHHccCCCC
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVA-R------------GLSKGQSWSLFILMAFEQGVE 149 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~-~------------~l~~~ea~~Lf~~~~~~~~~~ 149 (459)
+++-++|+|++...+......+...+.....++.+|++|.+.... . +++.++..+.+...+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 356699999998776666677777777666678888888763211 1 789999999988776432221
Q ss_pred CCCchHHHHHHHHHhhcCCChHHHH
Q 040680 150 PRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
.+. ++.+..|++.++|.+-.+.
T Consensus 213 ~~~---~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 213 LET---KDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp ECC---SHHHHHHHHHHTTCHHHHH
T ss_pred CCc---HHHHHHHHHHcCCCHHHHH
Confidence 110 2456788888888876443
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=2.6e-05 Score=70.78 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=73.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+-|.|+|++|+|||++|+.+++ ..... .+.++.+...+. ............+......
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~ 97 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV---------------IGGLGAARVRSLFKEARAR 97 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS---------------STTHHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh---------------ccChhHHHHHHHHHHHHhc
Confidence 456688999999999999999998 44332 234443322110 0000111112222222234
Q ss_pred ceEEEEEeCCCCCC------------hh---hHHHHHHhhccC--CCCcEEEEeecchhhhc----------------cC
Q 040680 84 KKYLLVLDDVWIEN------------CD---EWLKLETLLRNS--AGGSNIIVATRSERVAR----------------GL 130 (459)
Q Consensus 84 ~~~LlvlDdv~~~~------------~~---~~~~l~~~l~~~--~~gs~iiiTtr~~~~~~----------------~l 130 (459)
.+.+|++|+++... .. ....+...+... ..+..+|.||....... ..
T Consensus 98 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 98 APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 57899999996431 01 112222222222 23456666665433111 56
Q ss_pred ChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChH
Q 040680 131 SKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPL 171 (459)
Q Consensus 131 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 171 (459)
+.++..+++...+...... .........+++.+.|.+-
T Consensus 178 ~~~~r~~il~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLT---QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCC---BTHHHHHHHHHHTCTTCCH
T ss_pred CHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHCCCCCH
Confidence 7888888887776443321 1122234677777777643
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=1.4e-05 Score=77.51 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=81.1
Q ss_pred cccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccc-cccCCCCC---cch--HHH-hhccCCCCCc
Q 040680 270 SSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRI-LEGCGHTD---VDV--EAL-LDDLKPHKNL 342 (459)
Q Consensus 270 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~---~~~--~~~-~~~l~~l~~L 342 (459)
..|.++.+|+.+++++|.+..+|...-...+|+.+.+..+ +..++.. |.+|.-.. .+. ..+ ...+.. .+|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCc
Confidence 4577788888888888888878775444677777777642 5555543 22221000 000 000 011222 344
Q ss_pred ceEeeeeecccccCCC--CCCCCCCCcEEecCCCc----CcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCC
Q 040680 343 RELSIFYFGVRCQYIP--QLEQLPSLKSLTLSWLD----ALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDA 416 (459)
Q Consensus 343 ~~L~l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~----~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 416 (459)
+.+.+..+ ...++ .|..+++|+.+.+.+.. ....++...|. .+++|+.+.|.+ ++..+......
T Consensus 251 ~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---~c~~L~~l~l~~--~i~~I~~~aF~-- 320 (401)
T 4fdw_A 251 TTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---GCPKLARFEIPE--SIRILGQGLLG-- 320 (401)
T ss_dssp SEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---TCTTCCEECCCT--TCCEECTTTTT--
T ss_pred cEEEeCCC---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---CCccCCeEEeCC--ceEEEhhhhhc--
Confidence 44444322 22222 25556666666655421 01134443333 555666666652 35555433221
Q ss_pred CCCCcCCCCCCCCCccceeeecCCCCCCCCCC-----CCCCccceee
Q 040680 417 DGSKIDMIEPPSFPCLSELDISGCPKLILIPL-----YPYLETDWRI 458 (459)
Q Consensus 417 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~~L~~~L~i 458 (459)
.+++|+.+.|.++ ++.++. + +|+ .|.+
T Consensus 321 -----------~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~-~l~l 352 (401)
T 4fdw_A 321 -----------GNRKVTQLTIPAN--VTQINFSAFNNT-GIK-EVKV 352 (401)
T ss_dssp -----------TCCSCCEEEECTT--CCEECTTSSSSS-CCC-EEEE
T ss_pred -----------CCCCccEEEECcc--ccEEcHHhCCCC-CCC-EEEE
Confidence 4577777777543 555554 4 566 5554
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=2.4e-05 Score=74.48 Aligned_cols=155 Identities=11% Similarity=-0.002 Sum_probs=88.5
Q ss_pred EEeecCCCCcHHHHHHHHhCCccccc--CCC-eEEEEEeCCcccHHHHHHHHHHHhccccC-CccCHHHHHHHHHhhcCC
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKN--HFD-LRIWMCISDIFYHKAMLEKIIAFVAYREF-SKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~--~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~ 83 (459)
+.|+|++|+|||++|+.+++ .... .+. .++.++.++......+ .+.......... ..... .....-..
T Consensus 61 ~ll~G~~G~GKT~la~~la~--~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 132 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVSKPSKH-----DLENYPCP 132 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCCCCCTT-----HHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHH--HhCCCcccccceEEEccccccchHHH-HHHHHHHhhhcccccchh-----hcccCCCC
Confidence 88999999999999999998 3321 121 2333444332222222 222222111000 00000 00111123
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhh-c------------cCChhhhHHHHHHHHccCCCCC
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVA-R------------GLSKGQSWSLFILMAFEQGVEP 150 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~-~------------~l~~~ea~~Lf~~~~~~~~~~~ 150 (459)
++-++++|++..........+...+.......++|++|....-. . +++.++..+.+...+.......
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i 212 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKC 212 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55799999997665555666776666666667787777553321 1 7888999888887764333211
Q ss_pred CCchHHHHHHHHHhhcCCChHHHH
Q 040680 151 RGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 151 ~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
-++....|++.++|.|-.+.
T Consensus 213 ----~~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 213 ----DDGVLERILDISAGDLRRGI 232 (353)
T ss_dssp ----CHHHHHHHHHHTSSCHHHHH
T ss_pred ----CHHHHHHHHHHcCCCHHHHH
Confidence 23557788999999987543
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=4.3e-07 Score=76.48 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCCCcceEeeeee-cccccCCCCCCCC----CCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcc
Q 040680 337 KPHKNLRELSIFYF-GVRCQYIPQLEQL----PSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGW 408 (459)
Q Consensus 337 ~~l~~L~~L~l~~~-~~~~~~l~~l~~l----~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 408 (459)
..+++|++|++++| .....-+..++.+ ++|++|+|++|..++.-.-.... .+++|++|+|++|++++..
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~---~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH---HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG---GCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh---cCCCCCEEECCCCCCCCch
Confidence 34455555555555 1111112223332 35777777777666543332222 5678888888888777653
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.10 E-value=1.7e-05 Score=73.12 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=75.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+-+.|+|++|+|||++|+.+++ ..... .+.++.+.... . ............+......
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~ 109 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSELVK--------------K-FIGEGASLVKDIFKLAKEK 109 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC--------------C-STTHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHHHH--------------h-ccchHHHHHHHHHHHHHHc
Confidence 456789999999999999999998 43322 22333221100 0 0000011111222222234
Q ss_pred ceEEEEEeCCCCC-----------ChhhHHHHHHhhc-----cCCCCcEEEEeecchhhhc----------------cCC
Q 040680 84 KKYLLVLDDVWIE-----------NCDEWLKLETLLR-----NSAGGSNIIVATRSERVAR----------------GLS 131 (459)
Q Consensus 84 ~~~LlvlDdv~~~-----------~~~~~~~l~~~l~-----~~~~gs~iiiTtr~~~~~~----------------~l~ 131 (459)
++.+|++|+++.. +......+...+. ....+..||.||....... ..+
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~ 189 (285)
T 3h4m_A 110 APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189 (285)
T ss_dssp CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCC
T ss_pred CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCC
Confidence 5689999999431 1111222333322 1234566777776432221 678
Q ss_pred hhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCC-ChHHHH
Q 040680 132 KGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVG-VPLAIR 174 (459)
Q Consensus 132 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~ 174 (459)
.++..+++...+...... .... ...+++.+.| .|-.+.
T Consensus 190 ~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 190 EKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp HHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHH
Confidence 888999998876543321 1112 3556666666 343333
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.06 E-value=6.1e-05 Score=71.22 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=81.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.|.|+|++|+|||++|+.+++ .....| +.++...... .......+.. ..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~---------------------~~~~~~~~~~--~~~ 106 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEK---------------------SGDLAAILTN--LSE 106 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCS---------------------HHHHHHHHHT--CCT
T ss_pred CCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccc---------------------hhHHHHHHHh--ccC
Confidence 45689999999999999999987 433332 2233221111 1111111211 234
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCC------------------CCcEEEEeecchhhhc--------------cCCh
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSA------------------GGSNIIVATRSERVAR--------------GLSK 132 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiiTtr~~~~~~--------------~l~~ 132 (459)
..+|++|++..........+...+.... ++..+|.+|....... +++.
T Consensus 107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 5689999997765555555555554321 1245666655432211 7788
Q ss_pred hhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHHH
Q 040680 133 GQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIR 174 (459)
Q Consensus 133 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 174 (459)
++..+++...+..... .-..+....+++.+.|.|-.+.
T Consensus 187 ~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 187 SELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp HHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHH
Confidence 9999998877654332 1223456778888899885443
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=1.6e-05 Score=79.79 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=86.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.+.|+|++|+|||++|+.+++ ... + .++.++.+...... .....+...........-...... .....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~--~l~--~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~ 147 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQ--ELG--Y-DILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNG 147 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH--HTT--C-EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSST
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HcC--C-CEEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccC
Confidence 457899999999999999999998 332 2 23444444433322 222222211110000000000000 011235
Q ss_pred ceEEEEEeCCCCCCh---hhHHHHHHhhccCCCCcEEEEeecchh---hhc-----------cCChhhhHHHHHHHHccC
Q 040680 84 KKYLLVLDDVWIENC---DEWLKLETLLRNSAGGSNIIVATRSER---VAR-----------GLSKGQSWSLFILMAFEQ 146 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~---~~~-----------~l~~~ea~~Lf~~~~~~~ 146 (459)
++.+|++|+++.... ..+..+...+... +..||+++.+.. +.. +++.++..+.+...+...
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 678999999965322 2234555544432 334555554422 111 688899888887776543
Q ss_pred CCCCCCchHHHHHHHHHhhcCC-ChHHHHHHhhhh
Q 040680 147 GVEPRGSRLVEIGKDIVEKCVG-VPLAIRTVGRLL 180 (459)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~~l 180 (459)
....+. +....|++.++| +.-++..+....
T Consensus 226 ~~~i~~----~~l~~la~~s~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 226 KFKLDP----NVIDRLIQTTRGDIRQVINLLSTIS 256 (516)
T ss_dssp TCCCCT----THHHHHHHHTTTCHHHHHHHHTHHH
T ss_pred CCCCCH----HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 322222 346678888888 555666665443
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.98 E-value=5.6e-05 Score=69.10 Aligned_cols=24 Identities=21% Similarity=-0.026 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+.|.|+|++|+|||++|+.+++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999999998
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.98 E-value=0.00021 Score=66.96 Aligned_cols=24 Identities=25% Similarity=0.154 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+-|.|+|++|+|||+||+.+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 347789999999999999999998
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.97 E-value=5.5e-06 Score=72.15 Aligned_cols=100 Identities=13% Similarity=0.192 Sum_probs=53.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
+.|.|+|++|+|||+||+.+++ ....+...++|++.. .+...+..... ..........+.+ .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQ-----DQTMNEKLDYIKK-----V 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHHHH-----S
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhc-----cchHHHHHHHhcC-----C
Confidence 7889999999999999999998 444444456666542 33333332221 1112233333322 1
Q ss_pred EEEEEeCCCCCChhhHHH--HH-HhhccC-CCCcEEEEeecc
Q 040680 86 YLLVLDDVWIENCDEWLK--LE-TLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~--l~-~~l~~~-~~gs~iiiTtr~ 123 (459)
-+||+||++......|.+ +. ..+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 389999996532222111 11 122211 245578888864
No 179
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=4.5e-06 Score=68.81 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=52.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.++|+|..|+|||||++.+++. ....-..+++++..+.... . +..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~~~~~-----------------------------~-~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ--ALEAGKNAAYIDAASMPLT-----------------------------D-AAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH--HHTTTCCEEEEETTTSCCC-----------------------------G-GGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEcHHHhhHH-----------------------------H-HHhC
Confidence 467999999999999999999983 3221112667765443211 0 1123
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccC-CCCc-EEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNS-AGGS-NIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iiiTtr~ 123 (459)
.-++|+|++........+.+...+... ..|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 458899999765433334444444322 2333 48888874
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.96 E-value=5e-05 Score=71.32 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=72.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHH-HHHHHHhhcCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNK-LQEVHHQKIDR 83 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~ 83 (459)
.+-|.|+|++|+|||++|+.+++ .....| +.++.+ .+ .... ....+. ....+...-..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------~l----~~~~------~g~~~~~~~~~f~~a~~~ 109 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------DL----VSKW------MGESEKLVKQLFAMAREN 109 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------HH----HTTT------GGGHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------HH----hhcc------cchHHHHHHHHHHHHHhc
Confidence 45689999999999999999998 433322 223221 11 0000 001111 11122222234
Q ss_pred ceEEEEEeCCCCCCh-----------hhHHHHHHhhc---cCCCCcEEEEeecchhhhc--------------cCChhhh
Q 040680 84 KKYLLVLDDVWIENC-----------DEWLKLETLLR---NSAGGSNIIVATRSERVAR--------------GLSKGQS 135 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~iiiTtr~~~~~~--------------~l~~~ea 135 (459)
++.+|++|++..... .....+...+. ....+..||.||....... ..+.++.
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAAR 189 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHH
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHH
Confidence 668999999954211 01233333332 2334556666776533221 5677777
Q ss_pred HHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCC
Q 040680 136 WSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGV 169 (459)
Q Consensus 136 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 169 (459)
.+++...+....... -......+++.+.|.
T Consensus 190 ~~il~~~~~~~~~~~----~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 190 TTMFEINVGDTPCVL----TKEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHHHTTCCCCC----CHHHHHHHHHTTTTC
T ss_pred HHHHHHHhccCCCCC----CHHHHHHHHHHcCCC
Confidence 788877764332211 123456777777763
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=5e-05 Score=71.37 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=76.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
.+.+.|+|++|+||||||+.+++ .....-..+++++.. .+...+...+.. ...+.... ... +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~------~~~~~~~~~~~~-----~~~~~~~~----~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSAD------DFAQAMVEHLKK-----GTINEFRN----MYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEHH------HHHHHHHHHHHH-----TCHHHHHH----HHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEHH------HHHHHHHHHHHc-----CcHHHHHH----Hhc-C
Confidence 45788999999999999999998 443221234555432 233333333321 11111111 121 2
Q ss_pred eEEEEEeCCCCCCh--hhHHHHHHhhcc-CCCCcEEEEeecchhh---------hc-----------cCChhhhHHHHHH
Q 040680 85 KYLLVLDDVWIENC--DEWLKLETLLRN-SAGGSNIIVATRSERV---------AR-----------GLSKGQSWSLFIL 141 (459)
Q Consensus 85 ~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtr~~~~---------~~-----------~l~~~ea~~Lf~~ 141 (459)
..+|++|++..... .....+...+.. ...|..||+||..... .. + +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999965332 222333333322 2345678888764311 00 5 77777887777
Q ss_pred HHccCCCCCCCchHHHHHHHHHhhcCCCh
Q 040680 142 MAFEQGVEPRGSRLVEIGKDIVEKCVGVP 170 (459)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~glP 170 (459)
.+....... -++....+++.+ |..
T Consensus 178 ~~~~~~~~l----~~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 178 KLKEFNLEL----RKEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHTTCCC----CHHHHHHHHHHC-SSH
T ss_pred HHHhcCCCC----CHHHHHHHHHhC-CCH
Confidence 664332211 124455666666 554
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.93 E-value=5.7e-05 Score=70.41 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=66.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCC--eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFD--LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
...|.|+|++|+|||++|+.+++......... ..+.++.+.- ... ............+...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l--------------~~~-~~g~~~~~~~~~~~~~-- 129 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL--------------VGQ-YIGHTAPKTKEVLKRA-- 129 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--------------CCS-STTCHHHHHHHHHHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--------------hhh-cccccHHHHHHHHHhc--
Confidence 44689999999999999998887311111111 2233321110 000 0001111122222222
Q ss_pred CceEEEEEeCCCCC---------ChhhHHHHHHhhccCCCCcEEEEeecchhhh------c-------------cCChhh
Q 040680 83 RKKYLLVLDDVWIE---------NCDEWLKLETLLRNSAGGSNIIVATRSERVA------R-------------GLSKGQ 134 (459)
Q Consensus 83 ~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~------~-------------~l~~~e 134 (459)
+..+|++|+++.. .......+...+.....+..+|.||...... . +++.++
T Consensus 130 -~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 130 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEE 208 (309)
T ss_dssp -TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHH
T ss_pred -CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHH
Confidence 2348999999632 3344456666666666677888887543210 0 667777
Q ss_pred hHHHHHHHHcc
Q 040680 135 SWSLFILMAFE 145 (459)
Q Consensus 135 a~~Lf~~~~~~ 145 (459)
..+++...+..
T Consensus 209 ~~~il~~~l~~ 219 (309)
T 3syl_A 209 LFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 183
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.90 E-value=4.1e-05 Score=62.73 Aligned_cols=92 Identities=11% Similarity=-0.033 Sum_probs=55.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-|.|+|.+|+|||++|+.+++... +...+. + ++.....+. ..... .+... .
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~-v-~~~~~~~~~------------------~~~~~---~~~~a---~ 76 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEF-V-YRELTPDNA------------------PQLND---FIALA---Q 76 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST-TTTSCC-E-EEECCTTTS------------------SCHHH---HHHHH---T
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCE-E-EECCCCCcc------------------hhhhc---HHHHc---C
Confidence 44578999999999999999998321 112222 3 555433221 01111 11111 1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 123 (459)
...|++|++..........+...+.......++|.||..
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 236899999877666666677766555566788887764
No 184
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=7.6e-07 Score=85.53 Aligned_cols=138 Identities=16% Similarity=0.063 Sum_probs=79.4
Q ss_pred CccceEeecCCCCccc--cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhcc-CCCCCcceEeeeeec
Q 040680 275 LKHLWYLNLPGNGITK--LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDL-KPHKNLRELSIFYFG 351 (459)
Q Consensus 275 l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~ 351 (459)
..+|++|+|++|.+.. +..-...+++|+.|++++|. +.... ...+...+ ...++|++|++++|.
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~------------~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA------------CKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH------------HHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH------------HHHHHHHHHhcCCccceeeCCCCC
Confidence 3578888998888752 22223346678888888875 33221 11233333 345788888888883
Q ss_pred ccc---cCCCC-CCCCCCCcEEecCCCcCcceeccccC-cCCCCCCCcCEEeecCCCCCCcc-----ccccccCCCCCCc
Q 040680 352 VRC---QYIPQ-LEQLPSLKSLTLSWLDALVYICFSSI-ASRTRFSSLEYISILGCPELKGW-----LRRIDNDADGSKI 421 (459)
Q Consensus 352 ~~~---~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~-----~~~~~~~~~~~~~ 421 (459)
... ..++. +...++|++|+|++|. ++..+...+ ......++|+.|+|++| .+... .....
T Consensus 167 l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~-------- 236 (372)
T 3un9_A 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAR-------- 236 (372)
T ss_dssp CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHH--------
T ss_pred CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHH--------
Confidence 211 11222 4567788888888864 432211000 00114568888888886 45432 22222
Q ss_pred CCCCCCCCCccceeeecCCC
Q 040680 422 DMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~c~ 441 (459)
..++|++|+|++|+
T Consensus 237 ------~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 237 ------EHPSLELLHLYFNE 250 (372)
T ss_dssp ------HCSSCCEEECTTSS
T ss_pred ------hCCCCCEEeccCCC
Confidence 35788888888884
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.89 E-value=0.00017 Score=68.87 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=50.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecc-----------------hhhhc--------cCChhhhHHHH
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRS-----------------ERVAR--------GLSKGQSWSLF 139 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-----------------~~~~~--------~l~~~ea~~Lf 139 (459)
+.+|++|++..........+...+...... .++++|.. ..+.. +++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 359999999776555566666666544333 34444431 11111 78999999999
Q ss_pred HHHHccCCCCCCCchHHHHHHHHHhhcC-CChHHH
Q 040680 140 ILMAFEQGVEPRGSRLVEIGKDIVEKCV-GVPLAI 173 (459)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-glPLai 173 (459)
...+...... --.+....+++.+. |.|-.+
T Consensus 269 ~~~~~~~~~~----~~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 269 RIRCEEEDVE----MSEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp HHHHHHTTCC----BCHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCC----CCHHHHHHHHHHhcCCCHHHH
Confidence 8776543321 12345677788886 666433
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.88 E-value=0.00025 Score=65.56 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+.|.|+|++|+|||++|+.+++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 357889999999999999999998
No 187
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=5.1e-06 Score=79.20 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=85.8
Q ss_pred CccccCCCccceEeecCCCCccccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhcc--CCCCCcceE
Q 040680 268 VPSSISKLKHLWYLNLPGNGITKLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDL--KPHKNLREL 345 (459)
Q Consensus 268 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L 345 (459)
++..+..+++|+.|+++++.-..+|. + .+++|++|++..|. ++.. ....+ ..+++|++|
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~----l~~~-------------~l~~l~~~~lp~L~~L 224 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG----LPDS-------------VVEDILGSDLPNLEKL 224 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB----CCHH-------------HHHHHHHSBCTTCCEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC----CChH-------------HHHHHHHccCCCCcEE
Confidence 33445677899999999874234554 4 48899999998765 2211 11122 357899999
Q ss_pred eeeee----ccc--ccCCC-CC--CCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCc-----cccc
Q 040680 346 SIFYF----GVR--CQYIP-QL--EQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKG-----WLRR 411 (459)
Q Consensus 346 ~l~~~----~~~--~~~l~-~l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-----~~~~ 411 (459)
+|+.+ +.. ...+. .+ +.+|+|++|++.+|......+... .....+++|+.|+|+.+ .+.. +...
T Consensus 225 ~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISAG-VLTDEGARLLLDH 302 (362)
T ss_dssp EEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCSS-CCBHHHHHHHHTT
T ss_pred EEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCCC-CCChHHHHHHHhh
Confidence 99642 101 11111 12 358999999998875332222111 11126789999999874 5654 2222
Q ss_pred cccCCCCCCcCCCCCCCCCccceeeecCCC
Q 040680 412 IDNDADGSKIDMIEPPSFPCLSELDISGCP 441 (459)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 441 (459)
.. .+++|+.|+|++|.
T Consensus 303 L~--------------~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 303 VD--------------KIKHLKFINMKYNY 318 (362)
T ss_dssp HH--------------HHTTCSEEECCSBB
T ss_pred cc--------------cCCcceEEECCCCc
Confidence 22 57899999999984
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.85 E-value=0.00016 Score=70.80 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=75.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
+.+.|+|++|+||||+|+.+++ .....| +-++... ..... .+.++... ......+++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~--~~~~~f---~~l~a~~-~~~~~-ir~~~~~a----------------~~~~~~~~~ 107 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR--YANADV---ERISAVT-SGVKE-IREAIERA----------------RQNRNAGRR 107 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HTTCEE---EEEETTT-CCHHH-HHHHHHHH----------------HHHHHTTCC
T ss_pred cEEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEEecc-CCHHH-HHHHHHHH----------------HHhhhcCCC
Confidence 4588999999999999999998 443332 1222211 11111 11111110 001114567
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEE-eecchhhh--c------------cCChhhhHHHHHHHHccCCCC-
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIV-ATRSERVA--R------------GLSKGQSWSLFILMAFEQGVE- 149 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-Ttr~~~~~--~------------~l~~~ea~~Lf~~~~~~~~~~- 149 (459)
.+|++|++........+.+...+.. + ...+|. ||.+.... . +++.++..+++...+......
T Consensus 108 ~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~ 185 (447)
T 3pvs_A 108 TILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY 185 (447)
T ss_dssp EEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSS
T ss_pred cEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhh
Confidence 8999999976543344444444443 2 223333 44443211 1 789999999998876542111
Q ss_pred --CCCchHHHHHHHHHhhcCCChHHH
Q 040680 150 --PRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 150 --~~~~~~~~~~~~i~~~~~glPLai 173 (459)
....-.++....+++.++|.+-.+
T Consensus 186 ~~~~~~i~~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 186 GGQDIVLPDETRRAIAELVNGDARRA 211 (447)
T ss_dssp TTSSEECCHHHHHHHHHHHCSCHHHH
T ss_pred ccccCcCCHHHHHHHHHHCCCCHHHH
Confidence 001112345677888888877544
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.85 E-value=0.00016 Score=67.78 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=82.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
.++++.+.|++|+|||++|+.+++ ... ..++.++.+... ....+..+...... ....+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~~--~~~i~~~~~~~~~~---------------~~~~~ 104 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDCK--IDFVRGPLTNFASA---------------ASFDG 104 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTCC--HHHHHTHHHHHHHB---------------CCCSS
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEcccccC--HHHHHHHHHHHHhh---------------cccCC
Confidence 356788899999999999999988 332 234455544321 12222222111000 01124
Q ss_pred ceEEEEEeCCCCCC-hhhHHHHHHhhccCCCCcEEEEeecchhhhc-------------cCChhhhHHH-------HHHH
Q 040680 84 KKYLLVLDDVWIEN-CDEWLKLETLLRNSAGGSNIIVATRSERVAR-------------GLSKGQSWSL-------FILM 142 (459)
Q Consensus 84 ~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~~-------------~l~~~ea~~L-------f~~~ 142 (459)
++.++++|++.... ......+...+.....+.++|+||....-.. +++.++-.++ +...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999997654 4455556665554455678888887644221 5666663322 2222
Q ss_pred HccCCCCCCCchHHHHHHHHHhhcCCChH-HHHHHhhhh
Q 040680 143 AFEQGVEPRGSRLVEIGKDIVEKCVGVPL-AIRTVGRLL 180 (459)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~~l 180 (459)
+.......+. .+....+++.++|..- |+..+-...
T Consensus 185 ~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 185 CKHEGIAIAD---MKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHTCCBSC---HHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred HHHcCCCCCc---HHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 2222211111 2456678888877654 444444433
No 190
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.84 E-value=0.00018 Score=69.64 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=95.9
Q ss_pred CccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccc-cccCCCCCcch----HHH-hhccCCCCCcceEee
Q 040680 275 LKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRI-LEGCGHTDVDV----EAL-LDDLKPHKNLRELSI 347 (459)
Q Consensus 275 l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~----~~~-~~~l~~l~~L~~L~l 347 (459)
..+|+.+.+..+ +..++. .|.++++|+.+++..+ +..++.. |.++....+.. ..+ ...|..+++|+.+.+
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence 355666666533 555543 4555666666665542 3333322 11111111000 111 235677899999999
Q ss_pred eeeccc---ccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccccCCCCCCcC
Q 040680 348 FYFGVR---CQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRIDNDADGSKID 422 (459)
Q Consensus 348 ~~~~~~---~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 422 (459)
.++... ...++ .|..+++|+.+.+.. +++.++...|. .+++|+.+.|.. ++..+......
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~---~c~~L~~l~lp~--~l~~I~~~aF~-------- 343 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG---GNRKVTQLTIPA--NVTQINFSAFN-------- 343 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT---TCCSCCEEEECT--TCCEECTTSSS--------
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc---CCCCccEEEECc--cccEEcHHhCC--------
Confidence 887211 11233 388999999999984 68888877665 788999999964 57777654332
Q ss_pred CCCCCCCCccceeeecCCCCCCCCCC-----CC-CCccceeeC
Q 040680 423 MIEPPSFPCLSELDISGCPKLILIPL-----YP-YLETDWRIP 459 (459)
Q Consensus 423 ~~~~~~l~~L~~L~l~~c~~l~~lP~-----l~-~L~~~L~i~ 459 (459)
.+ +|+.|++.++ .+..++. ++ ++. .|.++
T Consensus 344 -----~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~-~l~vp 378 (401)
T 4fdw_A 344 -----NT-GIKEVKVEGT-TPPQVFEKVWYGFPDDIT-VIRVP 378 (401)
T ss_dssp -----SS-CCCEEEECCS-SCCBCCCSSCCCSCTTCC-EEEEC
T ss_pred -----CC-CCCEEEEcCC-CCcccccccccCCCCCcc-EEEeC
Confidence 55 8999999988 5555655 43 466 66654
No 191
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=3.3e-05 Score=66.12 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.+.+.|+|++|+|||++|+.+++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 466889999999999999999883
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.82 E-value=0.00024 Score=67.63 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+.|.|+|++|+|||++|+.+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999988
No 193
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=3.7e-07 Score=87.74 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=90.5
Q ss_pred ccceEeecCCCCcccc-----Ccccc-cccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 276 KHLWYLNLPGNGITKL-----PNSVS-KLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 276 ~~L~~L~l~~~~i~~l-----p~~i~-~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
.+|++|++++|.++.. ...+. +.++|+.|++++|. +.... +......+.+|++|++++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~---------------~~~l~~~L~~L~~L~Ls~ 135 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAG---------------LRTLLPVFLRARKLGLQL 135 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHH---------------HHHTHHHHHTEEEEECCS
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHH---------------HHHHHHHHHhccHhhcCC
Confidence 4688999999988643 22222 23699999999976 32210 011112235899999999
Q ss_pred ecccccCCCCC-----CCCCCCcEEecCCCcCcceeccccCc-CCCCCCCcCEEeecCCCCCCcc-----ccccccCCCC
Q 040680 350 FGVRCQYIPQL-----EQLPSLKSLTLSWLDALVYICFSSIA-SRTRFSSLEYISILGCPELKGW-----LRRIDNDADG 418 (459)
Q Consensus 350 ~~~~~~~l~~l-----~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~-----~~~~~~~~~~ 418 (459)
|.........+ ...++|++|++++|. ++..+...+. .....++|++|+|++|. +... .....
T Consensus 136 n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~----- 208 (372)
T 3un9_A 136 NSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLD----- 208 (372)
T ss_dssp SCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGG-----
T ss_pred CCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHh-----
Confidence 93221111111 345789999999974 4432211110 01157789999999964 5432 22223
Q ss_pred CCcCCCCCCCCCccceeeecCCCCCCC-----CCC----CCCCccceee
Q 040680 419 SKIDMIEPPSFPCLSELDISGCPKLIL-----IPL----YPYLETDWRI 458 (459)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lP~----l~~L~~~L~i 458 (459)
..++|+.|+|++| .++. ++. .++|+ .|.+
T Consensus 209 ---------~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~-~L~L 246 (372)
T 3un9_A 209 ---------RNRQLQELNVAYN-GAGDTAALALARAAREHPSLE-LLHL 246 (372)
T ss_dssp ---------GCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCC-EEEC
T ss_pred ---------cCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCC-EEec
Confidence 5679999999999 5653 222 47788 7765
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.80 E-value=9.6e-05 Score=70.31 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-|.|+|++|+|||+||+.+++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 45688999999999999999998
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0003 Score=67.06 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHF 35 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f 35 (459)
++++=|.++|++|+|||.||+++++ +....|
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 3467788999999999999999998 444443
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.74 E-value=0.00021 Score=62.73 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=51.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHh-----------ccccCCc-cCHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFV-----------AYREFSK-HDLN 71 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----------~~~~~~~-~~~~ 71 (459)
.-.++.|+|.+|+||||||..++. . .-..++|++.....+...+.+ +.+.. ....... .+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 457899999999999999999987 1 124688888766444443332 22222 1111111 1122
Q ss_pred HHHHHHHhhcCCceEEEEEeCCCC
Q 040680 72 KLQEVHHQKIDRKKYLLVLDDVWI 95 (459)
Q Consensus 72 ~~~~~l~~~l~~~~~LlvlDdv~~ 95 (459)
.....+......+.-++|+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344444444444577999998753
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=0.0002 Score=67.65 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=82.9
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccC-CC-eEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNH-FD-LRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
+.++|+.|+||||+|+.+++ .+... +. .+.-++.++......+ ++.+..+... .....+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~~~~--------------~~~~~~~~ 111 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDVV-RNQIKDFAST--------------RQIFSKGF 111 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHHH-HTHHHHHHHB--------------CCSSSCSC
T ss_pred EEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHHH-HHHHHHHHhh--------------cccCCCCc
Confidence 88999999999999999988 33221 11 1222332222111111 1111111000 00012346
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhhh-------------ccCChhhhHHHHHHHHccCCCCCCC
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERVA-------------RGLSKGQSWSLFILMAFEQGVEPRG 152 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~~-------------~~l~~~ea~~Lf~~~~~~~~~~~~~ 152 (459)
-++|+|++..........+...+......+++|++|....-. .+++.++..+.+...+.......
T Consensus 112 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i-- 189 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL-- 189 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB--
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC--
Confidence 789999997655556666777666666677777777654311 17888888887776653222111
Q ss_pred chHHHHHHHHHhhcCCChHH-HHHH
Q 040680 153 SRLVEIGKDIVEKCVGVPLA-IRTV 176 (459)
Q Consensus 153 ~~~~~~~~~i~~~~~glPLa-i~~~ 176 (459)
.++....+++.++|.+-- +..+
T Consensus 190 --~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 190 --SPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp --CHHHHHHHHHHHTTCHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCCHHHHHHHH
Confidence 124467788888887763 3443
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.68 E-value=0.00042 Score=68.01 Aligned_cols=24 Identities=25% Similarity=0.154 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+-|.|+|++|+|||+||+.+++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999998
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.68 E-value=4.7e-05 Score=64.89 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.|.|+|++|+|||++|+.+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 55678999999999999999987
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.67 E-value=0.00045 Score=66.61 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-|.|+|++|+|||++|+.+++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00038 Score=67.39 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=24.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
++++=|.++|++|+|||.||+++++ .....
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~--e~~~~ 242 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN 242 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH--HHTCE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH--HhCCC
Confidence 4567788999999999999999998 44433
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.60 E-value=0.00017 Score=67.15 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=50.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc--CCccCHHHHHHHHHhhcCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE--FSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 83 (459)
..+.++|++|+|||++|+.+++ .....-...+.++.+...... ....+ ++... ............+.. .
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~l---~g~~~~~~~~~~~~~~~~~~~~---~ 118 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEEGGQLTEAVRR---R 118 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHHH---HCCCTTSTTTTTCCHHHHHHHH---C
T ss_pred eEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHHh---cCCCCccccccccchHHHHHHh---C
Confidence 5799999999999999999998 433222234555544322211 11111 11110 000000122222222 2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhc
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~ 109 (459)
...++++|++..........+...+.
T Consensus 119 ~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 34699999997766555666666554
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.60 E-value=0.00011 Score=60.07 Aligned_cols=88 Identities=9% Similarity=-0.041 Sum_probs=50.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..-|.|+|.+|+|||++|+.+++. .. ..+.++.+.. ..... ..+.+..+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~--~~----~~~~~~~~~~--~~~~~---------------------~~~~~~a~-- 75 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN--GT----PWVSPARVEY--LIDMP---------------------MELLQKAE-- 75 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT--TS----CEECCSSTTH--HHHCH---------------------HHHHHHTT--
T ss_pred CCcEEEECCCCccHHHHHHHHHHh--CC----CeEEechhhC--ChHhh---------------------hhHHHhCC--
Confidence 345789999999999999999984 22 2222222211 11110 11111111
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccC-CCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNS-AGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~ 123 (459)
.-.+++|++..........+...+... ..+.++|.||..
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 236889999876655555555555433 345678887754
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=0.00081 Score=62.28 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=22.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+.|.|+|++|+|||++|+.+++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 456789999999999999999998
No 205
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.51 E-value=0.00014 Score=67.25 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=24.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
.++.+.++|++|+|||+||+.+++ .....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~--~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR--KMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH--HHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 457888999999999999999998 44433
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00076 Score=65.25 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=24.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
++++=|.++|++|+|||.||+++++ +....
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~--e~~~~ 270 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN--RTDAT 270 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH--HHTCE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCCC
Confidence 4567788999999999999999998 44443
No 207
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00051 Score=65.80 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=24.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
++++=|.++|++|+|||.||+++++ +....
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~ 243 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVAN--QTSAT 243 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHH--HHTCE
T ss_pred CCCCCCceECCCCchHHHHHHHHHH--HhCCC
Confidence 4567789999999999999999998 44443
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00048 Score=66.65 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=24.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
++++=|.++|++|+|||.+|+++++ +....
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~--e~~~~ 242 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA--QTNAT 242 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH--HHTCE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH--HhCCC
Confidence 4567789999999999999999998 44433
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.0011 Score=61.40 Aligned_cols=122 Identities=9% Similarity=-0.111 Sum_probs=74.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCc-ccccCCCeEEEEEeCC-cccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDE-TVKNHFDLRIWMCISD-IFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
.+...++|+.|+|||++|+.+++.. ........+.+++.++ ...+.. .+++........ ..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p----------------~~ 80 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP----------------EL 80 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC----------------SS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc----------------cc
Confidence 4678899999999999999998721 1111233445555432 222222 222333322110 12
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh-hhc----------cCChhhhHHHHHHHH
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER-VAR----------GLSKGQSWSLFILMA 143 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-~~~----------~l~~~ea~~Lf~~~~ 143 (459)
+++-++|+|+++.........+...+......+.+|++|.+.. +.. +++.++..+.+....
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHHHHHHHh
Confidence 4566899999987766677778887877667777877775432 111 778888888776665
No 210
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.46 E-value=6.5e-05 Score=69.22 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=45.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe--CCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI--SDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI 81 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 81 (459)
..+++.|+|++|+|||+||.+++.. . -..++|++. ....+ . . ..+.+...+.+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~-------------~--~-~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLS-------------G--Y-NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSST-------------T--C-BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhh-------------h--h-hcCHHHHHHHHHHHH
Confidence 4577899999999999999999873 1 123567776 22200 0 0 134455555555555
Q ss_pred CCceEEEEEeCCCC
Q 040680 82 DRKKYLLVLDDVWI 95 (459)
Q Consensus 82 ~~~~~LlvlDdv~~ 95 (459)
.+.+ ++|+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5455 999999954
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.002 Score=58.03 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-|.|+|++|+||||+|+.+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45588999999999999999998
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.001 Score=64.33 Aligned_cols=30 Identities=30% Similarity=0.201 Sum_probs=24.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH 34 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 34 (459)
+++|=|.++|++|+|||.+|+++++ .....
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~--~~~~~ 233 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN--STKAA 233 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH--HHTCE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 3567789999999999999999998 44433
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=0.0031 Score=59.27 Aligned_cols=41 Identities=12% Similarity=-0.043 Sum_probs=28.5
Q ss_pred cCChhhhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCChHHH
Q 040680 129 GLSKGQSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGVPLAI 173 (459)
Q Consensus 129 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 173 (459)
+.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+
T Consensus 179 ~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 179 FYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp CCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHH
Confidence 67888888888877643222 122356788999999999644
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=1.5e-05 Score=72.13 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=17.6
Q ss_pred CccceEeecCCCCcccc---CcccccccCCCeeccCCC
Q 040680 275 LKHLWYLNLPGNGITKL---PNSVSKLLNLETPDCNGC 309 (459)
Q Consensus 275 l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~ 309 (459)
+++|+.|+|++|.+..+ |..+..+++|++|+|++|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 44555555555554432 233445555555555553
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.30 E-value=0.00055 Score=67.79 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=74.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
++.+-|.|+|++|+|||++|+.+++ +.... .+.++... + ... ............+.....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~~------l----~~~-----~~g~~~~~~~~~f~~A~~ 295 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE------I----MSK-----LAGESESNLRKAFEEAEK 295 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHHH------H----HTS-----CTTHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEchH------h----hhh-----hcchhHHHHHHHHHHHHh
Confidence 3456789999999999999999988 43322 23333211 1 000 001111122223333334
Q ss_pred CceEEEEEeCCCCC--------C---hhhHHHHHHhhccC--CCCcEEEEeecchhhhc----------------cCChh
Q 040680 83 RKKYLLVLDDVWIE--------N---CDEWLKLETLLRNS--AGGSNIIVATRSERVAR----------------GLSKG 133 (459)
Q Consensus 83 ~~~~LlvlDdv~~~--------~---~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~~~----------------~l~~~ 133 (459)
+++.+|+||+++.. . ......+...+... ..+..||.||....... ..+.+
T Consensus 296 ~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 56789999998311 0 01123344444322 23445555665442211 56778
Q ss_pred hhHHHHHHHHccCCCCCCCchHHHHHHHHHhhcCCC-hHHHH
Q 040680 134 QSWSLFILMAFEQGVEPRGSRLVEIGKDIVEKCVGV-PLAIR 174 (459)
Q Consensus 134 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~ 174 (459)
+-.+++...+..... ..... ...+++.+.|. +-.+.
T Consensus 376 eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 376 GRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLA 412 (489)
T ss_dssp HHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHH
Confidence 888888777643221 11122 34566666664 44444
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.28 E-value=0.0001 Score=66.71 Aligned_cols=107 Identities=15% Similarity=0.052 Sum_probs=65.4
Q ss_pred CCCccceE--eecCCCCccccCc----ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEe
Q 040680 273 SKLKHLWY--LNLPGNGITKLPN----SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELS 346 (459)
Q Consensus 273 ~~l~~L~~--L~l~~~~i~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (459)
.....|.. ++++.|....++. ...++++|++|+|++|. +..++. ++..++.+++|+.|+
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~--------------l~~~~~~l~~L~~L~ 202 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDD--------------MSSIVQKAPNLKILN 202 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGG--------------GTTHHHHSTTCCEEE
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCcc--------------chhHHhhCCCCCEEE
Confidence 33344444 5566665443332 22568899999999966 665542 122345669999999
Q ss_pred eeeecccccCCCCCCCCC--CCcEEecCCCcCcceecc------ccCcCCCCCCCcCEEee
Q 040680 347 IFYFGVRCQYIPQLEQLP--SLKSLTLSWLDALVYICF------SSIASRTRFSSLEYISI 399 (459)
Q Consensus 347 l~~~~~~~~~l~~l~~l~--~L~~L~l~~~~~l~~~~~------~~~~~~~~l~~L~~L~L 399 (459)
|++| ....+..+..+. +|++|+++++.--..++. ..+. .||+|+.|+=
T Consensus 203 Ls~N--~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~---~~P~L~~LDg 258 (267)
T 3rw6_A 203 LSGN--ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE---RFPKLLRLDG 258 (267)
T ss_dssp CTTS--CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH---HCTTCCEESS
T ss_pred CCCC--ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH---HCcccCeECC
Confidence 9999 333334444444 999999998653332321 1112 7888888863
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.28 E-value=0.0022 Score=63.03 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++-|.|+|++|+|||+||+.+++
T Consensus 49 p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 44588999999999999999998
No 218
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=0.00013 Score=67.82 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=27.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccc-cCCCeEEEEEe
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVK-NHFDLRIWMCI 43 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~wv~~ 43 (459)
.+.+.|+|++|+|||+||..+++ ... ..-..++++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 46788999999999999999998 443 33334555543
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.23 E-value=0.0003 Score=61.77 Aligned_cols=116 Identities=9% Similarity=-0.087 Sum_probs=67.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccC--CccCHHHHHHHHHhh
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF--SKHDLNKLQEVHHQK 80 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~ 80 (459)
..-.++.|+|..|+||||+|..+++ +...+-..++.+...... + ...+++.+++.... ......+..+.+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 3457899999999999999999988 444443344455433221 1 22234444432211 122334555566655
Q ss_pred cCCce-EEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 81 IDRKK-YLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 81 l~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
+.+.+ -++|+|.+..-+.+..+.+.. +.. .|..||+|-++.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 54444 499999986543344444433 332 27889999987654
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.21 E-value=0.00065 Score=64.06 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=54.5
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
|.-+++.|+|++|+||||||.+++. .....-..++|++.....+.. .+++++... ....+.++....+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 3567999999999999999999997 333322357889877666544 344444221 1233455555554
Q ss_pred HhhcC-CceEEEEEeCCCC
Q 040680 78 HQKID-RKKYLLVLDDVWI 95 (459)
Q Consensus 78 ~~~l~-~~~~LlvlDdv~~ 95 (459)
....+ .+.-++|+|.+-.
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 44332 3445888998743
No 221
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.18 E-value=0.0014 Score=68.41 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=43.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
+++=|.++|++|+|||+||+++++ +...+| +.++..+ + .. .........+...+....+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~~------l----~s-----k~~gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE------I----MS-----KLAGESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHHH------H----HS-----SCTTHHHHHHHHHHHHHTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhHH------h----hc-----ccchHHHHHHHHHHHHHHHc
Confidence 467789999999999999999999 444332 3343211 1 00 01111122233334444456
Q ss_pred ceEEEEEeCCCC
Q 040680 84 KKYLLVLDDVWI 95 (459)
Q Consensus 84 ~~~LlvlDdv~~ 95 (459)
.+++|++|+++.
T Consensus 297 ~PsIIfIDEiDa 308 (806)
T 3cf2_A 297 APAIIFIDELDA 308 (806)
T ss_dssp CSEEEEEESGGG
T ss_pred CCeEEEEehhcc
Confidence 789999999853
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.16 E-value=0.00094 Score=59.02 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=61.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccC------------------
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF------------------ 65 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 65 (459)
.-.+++|.|.+|+|||||++.++.. ....-..++|++.... ...+...+ ..++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEES--RDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSSC--HHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcccC--HHHHHHHH-HHhcchHHHHhhCCEEEEeccccccC
Confidence 3468999999999999999999863 2222235667665432 23332222 23321100
Q ss_pred -----CccCHHHHHHHHHhhc---CCceEEEEEeCCCCC---ChhhHHHHHHhhccC--CCCcEEEEeecch
Q 040680 66 -----SKHDLNKLQEVHHQKI---DRKKYLLVLDDVWIE---NCDEWLKLETLLRNS--AGGSNIIVATRSE 124 (459)
Q Consensus 66 -----~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~---~~~~~~~l~~~l~~~--~~gs~iiiTtr~~ 124 (459)
...+.++....+.+.+ +-++.++|+|..... +......+...+... ..|..||++|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113444444444333 222348999997521 223334444443322 3577888888754
No 223
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.15 E-value=0.00037 Score=59.43 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=64.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc---ccHHHHHHHHHHHhccc----c--CCc-------cC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI---FYHKAMLEKIIAFVAYR----E--FSK-------HD 69 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~----~--~~~-------~~ 69 (459)
..|.|++..|.||||.|...+- +...+=-.+.++.+... .....++..+ . +... . ... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~-v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPH-G-VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGG-T-CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhC-C-cEEEEcccccccCCCCcHHHHHH
Confidence 4667777788999999998887 44444334555544332 1222233222 0 1000 0 001 11
Q ss_pred HHHHHHHHHhhcCCceE-EEEEeCCCC---CChhhHHHHHHhhccCCCCcEEEEeecch
Q 040680 70 LNKLQEVHHQKIDRKKY-LLVLDDVWI---ENCDEWLKLETLLRNSAGGSNIIVATRSE 124 (459)
Q Consensus 70 ~~~~~~~l~~~l~~~~~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 124 (459)
.........+.+.+.+| |+|||.+-. -.....+.+...+........||+|+|+.
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12233444555655444 999999821 12234566777777777888999999975
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.09 E-value=0.0013 Score=62.49 Aligned_cols=85 Identities=9% Similarity=-0.014 Sum_probs=54.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
+.-+++.|+|.+|+||||||.+++.. ....-..++|++....++.. .++.++... ....+.++..+.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 34678999999999999999999873 33333478999987766543 233443221 1223455555555
Q ss_pred HhhcCC-ceEEEEEeCCC
Q 040680 78 HQKIDR-KKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l~~-~~~LlvlDdv~ 94 (459)
....+. ..-++|+|.+-
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 544433 34589999874
No 225
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.08 E-value=0.0014 Score=61.40 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=39.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccC----CCeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNH----FDLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
+..+++.|+|.+|+|||+||.+++........ -..++|++....++...+. ++++.++
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 34678999999999999999999863211110 2478999888776655544 3344443
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.0012 Score=58.69 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=33.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCccccc----CCCeEEEEEeCCcccHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKN----HFDLRIWMCISDIFYHK 50 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~~~~~~~~~ 50 (459)
.-.++.|+|++|+||||||..++....... .-..++|++....+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 457899999999999999999987311111 23578999877654443
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.01 E-value=0.0021 Score=58.17 Aligned_cols=111 Identities=12% Similarity=0.024 Sum_probs=54.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
...|.|+|.+|+|||++|+.+++. ....-...+.++.+... ...+...++........+. .......+.. ..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~~~-~~~~~~~l~g~~~~~~~g~--~~~~~~~l~~---a~ 100 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-ENLLDSELFGHEAGAFTGA--QKRHPGRFER---AD 100 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGGSC-HHHHHHHHHCCC-----------CCCCHHHH---TT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCCCC-hhHHHHHhcCCcccccccc--cccccchhhh---cC
Confidence 456889999999999999999983 22211223445544331 1111111211000000000 0000001111 12
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhhccC-----------CCCcEEEEeecc
Q 040680 85 KYLLVLDDVWIENCDEWLKLETLLRNS-----------AGGSNIIVATRS 123 (459)
Q Consensus 85 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 123 (459)
.-+|++|++..........+...+... ..+.+||.||..
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 348999999776555555555555432 234678887765
No 228
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.01 E-value=0.0001 Score=63.06 Aligned_cols=118 Identities=17% Similarity=0.027 Sum_probs=67.7
Q ss_pred ccCCCccceEeecCCC-Ccc-----ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcce
Q 040680 271 SISKLKHLWYLNLPGN-GIT-----KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRE 344 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (459)
.+...+.|++|+|++| .+. .+...+...++|++|++++|. +..- ....+.+.+...++|++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~------------g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDP------------VAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHH------------HHHHHHHHHHHCSSCCE
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChH------------HHHHHHHHHHhCCCcCE
Confidence 3566778999999998 764 355567777889999999875 3211 11234455556678888
Q ss_pred Eeeeeeccccc---CCC-CCCCCCCCcEEec--CCCcCcceeccccCc-CCCCCCCcCEEeecCC
Q 040680 345 LSIFYFGVRCQ---YIP-QLEQLPSLKSLTL--SWLDALVYICFSSIA-SRTRFSSLEYISILGC 402 (459)
Q Consensus 345 L~l~~~~~~~~---~l~-~l~~l~~L~~L~l--~~~~~l~~~~~~~~~-~~~~l~~L~~L~L~~~ 402 (459)
|+|++|..... .+. .+...++|++|++ +++ .++.-....+. .....++|+.|+|++|
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 88888822111 111 2455667788887 443 23221100000 0013356777777664
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.01 E-value=0.0014 Score=61.84 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=54.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
+.-+++.|+|.+|+||||||.+++. .....=..++|++....++.. .++.++... ....+.++..+.+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3467899999999999999999987 333333468899887765543 234443221 1123445555544
Q ss_pred HhhcC-CceEEEEEeCCCC
Q 040680 78 HQKID-RKKYLLVLDDVWI 95 (459)
Q Consensus 78 ~~~l~-~~~~LlvlDdv~~ 95 (459)
....+ .+.-++|+|.+-.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 43333 3455899998743
No 230
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.00 E-value=0.0027 Score=59.93 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=39.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCccccc----CCCeEEEEEeCCcccHHHHHHHHHHHh
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKN----HFDLRIWMCISDIFYHKAMLEKIIAFV 60 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 60 (459)
+.-+++.|+|.+|+|||+||.+++....... .-..++|++....++...+. +++..+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~ 180 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRF 180 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHc
Confidence 4567999999999999999999987322211 22478999988776665544 334444
No 231
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.96 E-value=0.0019 Score=59.24 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=53.3
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccC--CCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHH-HHHHH
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNH--FDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKL-QEVHH 78 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-~~~l~ 78 (459)
++-|.|.+|+||||||.+++. ..... =..++|++....++... +++++... ....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 789999999999999999987 34333 24689999877776542 55665331 122344544 33322
Q ss_pred hh--c-CCceEEEEEeCCCC
Q 040680 79 QK--I-DRKKYLLVLDDVWI 95 (459)
Q Consensus 79 ~~--l-~~~~~LlvlDdv~~ 95 (459)
.. + .++.-++|+|.+-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 34678999999843
No 232
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.93 E-value=0.0017 Score=60.71 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=39.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCccccc---------CC-----CeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKN---------HF-----DLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
+.-+++.|+|.+|+|||+||.+++.+..... .. ..++|++....++..++.+ +++.++
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3567999999999999999999986322211 11 4788998887766655543 344443
No 233
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.85 E-value=0.0037 Score=57.82 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-+.|+|++|+|||++|+.+++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999998
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.82 E-value=0.0018 Score=61.16 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=51.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
+..+++.|.|.+|+||||||.+++.. ....-..++|++....++... +..++... ....+.++..+.+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 35679999999999999999999873 333334688999877665432 33443211 1112334444443
Q ss_pred Hhhc-CCceEEEEEeCCC
Q 040680 78 HQKI-DRKKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l-~~~~~LlvlDdv~ 94 (459)
.... ..+.-++|+|.+-
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 3222 1334488899873
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.81 E-value=0.002 Score=64.88 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++.++|++|+||||||+.++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999998
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.78 E-value=0.0043 Score=57.17 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=28.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCC-eEEEEEeC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFD-LRIWMCIS 44 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~-~~~wv~~~ 44 (459)
.-.+++|.|.+|+|||||++.++.. ....-. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 3568999999999999999999873 322212 46677644
No 237
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.76 E-value=0.0012 Score=61.16 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....|.|+|.+|+|||++|+.+++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHH
Confidence 345688999999999999999987
No 238
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.75 E-value=0.0034 Score=59.31 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.2
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCC---C-eEEEEEeCCccc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHF---D-LRIWMCISDIFY 48 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f---~-~~~wv~~~~~~~ 48 (459)
+.-+++.|+|.+|+|||||+..++......... . .++|++....+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 456899999999999999999998732111111 2 458998766543
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00072 Score=57.56 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=21.6
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|....+.|.|+|+.|+||||+|+.++.
T Consensus 1 m~~~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 1 MKKNLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp ----CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 445567899999999999999999987
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.73 E-value=0.003 Score=66.44 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=55.2
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCceE
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKKY 86 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 86 (459)
.+.++|++|+|||++|+.+++ .....-...+.++.+....... .........+.+ ....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~~~----------------~~~~~l~~~~~~---~~~~ 581 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEKHS----------------TSGGQLTEKVRR---KPYS 581 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSSCC----------------CC---CHHHHHH---CSSS
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhcccccc----------------cccchhhHHHHh---CCCe
Confidence 589999999999999999998 4322223345555443211000 000111112221 2334
Q ss_pred EEEEeCCCCCChhhHHHHHHhhccC-----------CCCcEEEEeec
Q 040680 87 LLVLDDVWIENCDEWLKLETLLRNS-----------AGGSNIIVATR 122 (459)
Q Consensus 87 LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr 122 (459)
+|+||++.....+....+...+... .....||.||.
T Consensus 582 vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 582 VVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred EEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 8999999877666666666665442 23567888887
No 241
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.69 E-value=0.017 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|+.|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 242
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.69 E-value=0.00014 Score=62.15 Aligned_cols=123 Identities=15% Similarity=0.065 Sum_probs=75.9
Q ss_pred cCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeeccccc---CCCC-CCCCCCC
Q 040680 291 LPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFGVRCQ---YIPQ-LEQLPSL 366 (459)
Q Consensus 291 lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~l~~-l~~l~~L 366 (459)
+...+...++|++|++++|+.+..- ....+.+.+...++|++|++++|..... .+.. +...++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~------------g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVP------------TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHH------------HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHH------------HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence 3445667889999999997223321 1134566778889999999999832111 1121 4456789
Q ss_pred cEEecCCCcCcceeccc-cCcCCCCCCCcCEEee--cCCCCCCc-----cccccccCCCCCCcCCCCCCCCCccceeeec
Q 040680 367 KSLTLSWLDALVYICFS-SIASRTRFSSLEYISI--LGCPELKG-----WLRRIDNDADGSKIDMIEPPSFPCLSELDIS 438 (459)
Q Consensus 367 ~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~L--~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 438 (459)
++|+|++|. +..-... ........++|++|+| +++ .+.. +..... ..++|++|+++
T Consensus 96 ~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~--------------~n~~L~~L~L~ 159 (185)
T 1io0_A 96 KSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE--------------KNTTLLKFGYH 159 (185)
T ss_dssp CEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH--------------HCSSCCEEECC
T ss_pred CEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH--------------hCCCcCEEecc
Confidence 999999863 4321110 0011125578999999 654 4543 222222 45789999999
Q ss_pred CCC
Q 040680 439 GCP 441 (459)
Q Consensus 439 ~c~ 441 (459)
+|.
T Consensus 160 ~n~ 162 (185)
T 1io0_A 160 FTQ 162 (185)
T ss_dssp CSS
T ss_pred CCC
Confidence 984
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.68 E-value=0.00085 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.6
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....++|+|.|+.|+||||+|+.++.
T Consensus 15 ~~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 15 RRFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CCCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33456899999999999999999987
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.67 E-value=0.00098 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|.+..++|+|+|++|+|||||++.++.
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 556678999999999999999999987
No 245
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.66 E-value=0.0096 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.59 E-value=0.003 Score=57.55 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
=+.|+|++|+||||||+.++.
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999999999998
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.59 E-value=0.0036 Score=57.58 Aligned_cols=86 Identities=8% Similarity=0.039 Sum_probs=45.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCccccc-CCCeEEEEEeCCc-ccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKN-HFDLRIWMCISDI-FYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKI 81 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 81 (459)
..++|+++|.+|+||||++..++. .... .=..+.+++.... ....+.+....+..+.+.....+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h
Confidence 357999999999999999999987 3331 1124555554322 122223333333232222112233334333333 3
Q ss_pred CCceEEEEEeCC
Q 040680 82 DRKKYLLVLDDV 93 (459)
Q Consensus 82 ~~~~~LlvlDdv 93 (459)
...=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 33447888844
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.0009 Score=56.52 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|.|+|++|+||||+|+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.56 E-value=0.043 Score=51.56 Aligned_cols=146 Identities=13% Similarity=-0.063 Sum_probs=90.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccc-cCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVK-NHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 82 (459)
..++..++|..|.||++.|..+.+ ... ..|+....+.+....+..++...+. . .-+.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-------------------~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEEHHTFSIDPNTDWNAIFSLCQ-A-------------------MSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCEEEEEECCTTCCHHHHHHHHH-H-------------------HHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCeeEEEEecCCCCHHHHHHHhc-C-------------------cCCc
Confidence 467899999999999999999987 332 2343222222222233333322211 0 1123
Q ss_pred CceEEEEEeCCCC-CChhhHHHHHHhhccCCCCcEEEEeecc-------hhhhc------------cCChhhhHHHHHHH
Q 040680 83 RKKYLLVLDDVWI-ENCDEWLKLETLLRNSAGGSNIIVATRS-------ERVAR------------GLSKGQSWSLFILM 142 (459)
Q Consensus 83 ~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~-------~~~~~------------~l~~~ea~~Lf~~~ 142 (459)
+++-++|+|++.. ......+.+...+....+++.+|+++.. ..+.. +++.++..+.+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4566888999866 4446778888888776677777776643 12221 78888888877776
Q ss_pred HccCCCCCCCchHHHHHHHHHhhcCCChHHHHH
Q 040680 143 AFEQGVEPRGSRLVEIGKDIVEKCVGVPLAIRT 175 (459)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 175 (459)
+...+. .-.++.+..+++.++|...++..
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 644332 11235577888889988776543
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.52 E-value=0.0015 Score=55.88 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+...+|+|+|++|+||||+++.++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999999883
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.50 E-value=0.0072 Score=55.77 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=47.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhcccc---CCccCHHHH-HHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYRE---FSKHDLNKL-QEVHH 78 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l~ 78 (459)
..++|+|+|.+|+||||++..++. .....-..+.+++..... ...+.+...++..+... ....+.... ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999987 443332245555443221 11222333444443221 112232222 23344
Q ss_pred hhcCCceEEEEEeCCC
Q 040680 79 QKIDRKKYLLVLDDVW 94 (459)
Q Consensus 79 ~~l~~~~~LlvlDdv~ 94 (459)
+.+....-++|+|-.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 4344444478888663
No 252
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.48 E-value=0.00079 Score=57.36 Aligned_cols=110 Identities=13% Similarity=-0.029 Sum_probs=53.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc--cCCccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR--EFSKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~ 82 (459)
.+++.|+|+.|+||||+|.+++.+ ...+-..++++..... .+.....+...++.. .....+. ..+.+.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~--~~~~g~~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~ 74 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI--YKLGKKKVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERP----EEMRKYIE 74 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH--HHHTTCEEEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeeccc--cccCcccEEecCCCceeeEEECCH----HHHHHHhc
Confidence 468899999999999999777763 2211112333322210 000000011111100 0001111 11223333
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER 125 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 125 (459)
++.-++++|.+..-+.+..+.+...... |..|++|.++..
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBC
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccc
Confidence 4566999999865433333334333332 778999888654
No 253
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.48 E-value=0.0013 Score=56.75 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=22.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....+|+|+|++|+||||+|+.++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999988
No 254
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.46 E-value=0.025 Score=52.46 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=36.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAF 59 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 59 (459)
+-.++.|.|.+|+||||+|.+++.+...++ ..++|++... +...+...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHHHH
Confidence 456899999999999999999987432222 5788887663 355555555543
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.44 E-value=0.0078 Score=64.13 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-+.++|.+|+|||++|+.+++
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999999998
No 256
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.42 E-value=0.0074 Score=57.89 Aligned_cols=57 Identities=7% Similarity=-0.047 Sum_probs=37.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccc----cCCCeEEEEEeCCcccHHHHHHHHHHHhc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVK----NHFDLRIWMCISDIFYHKAMLEKIIAFVA 61 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 61 (459)
.-.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 45789999999999999999775311111 12346899987765554443 33555544
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.40 E-value=0.0018 Score=54.60 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++|.|.|++|+||||+|+.++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 258
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.39 E-value=0.0017 Score=55.97 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|.|+|++|+||||+|+.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.38 E-value=0.0017 Score=58.15 Aligned_cols=27 Identities=22% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|+....+|+|+|+.|+||||+++.++.
T Consensus 23 ~~~~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp ---CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344567999999999999999999994
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.38 E-value=0.0016 Score=54.58 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=19.0
Q ss_pred eeEEeecCCCCcHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLV 25 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v 25 (459)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.36 E-value=0.0017 Score=54.31 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=20.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|.|.|+.|+||||+|+.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 262
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.35 E-value=0.0019 Score=56.86 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|.....+|+|+|+.|+||||+|+.++.
T Consensus 1 mm~~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 1 MTAIAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp --CCSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 434456899999999999999999976
No 263
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.32 E-value=0.0032 Score=56.59 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
=+.|+|++|+||||||+.++.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999998
No 264
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.30 E-value=0.0075 Score=58.58 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=32.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC-CeEEEEEeCCcc-cHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF-DLRIWMCISDIF-YHKAMLEKII 57 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~ 57 (459)
+.++|+|.+|+||||||..+..+ ...++ +.++++-+++.. ...++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 45889999999999999999874 32222 345666666543 3444444443
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.30 E-value=0.002 Score=54.62 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.30 E-value=0.0018 Score=54.31 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|+|+.|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.25 E-value=0.002 Score=54.89 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|+|+.|+|||||++.+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.24 E-value=0.0014 Score=55.80 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|.|.|+|++|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999876
No 269
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.23 E-value=0.006 Score=60.12 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..-+.|+|++|+|||++|+.+++
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999998
No 270
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.23 E-value=0.02 Score=56.48 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++=|.|+|++|+|||+||+.++.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34489999999999999999998
No 271
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.21 E-value=0.0025 Score=59.18 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=29.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS 44 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~ 44 (459)
..|||+|+|-|||||||.|..++. .....=..|.-+++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 578999999999999999888876 444333346666655
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.17 E-value=0.0027 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|+|+.|+||||+|+.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 273
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.16 E-value=0.032 Score=52.56 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC--CCCcEEEEeecchhhh
Q 040680 74 QEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS--AGGSNIIVATRSERVA 127 (459)
Q Consensus 74 ~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~~ 127 (459)
.-.+.+.+..++-+|++|.--. .|...-..+...+... ..|..||++|.+...+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 3445667777888999998643 2334445555555433 3477899999886554
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.14 E-value=0.003 Score=53.95 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|.|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 275
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.13 E-value=0.0043 Score=56.60 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
=|.|+|++|+||||||+.++.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 389999999999999999998
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.12 E-value=0.003 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+++|+|+.|+|||||++.++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 277
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.10 E-value=0.0039 Score=66.43 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=48.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCce
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRKK 85 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 85 (459)
..+.|+|++|+|||++|+.+++ .....-...+.++.+...... ....++..-. ...+..........+.+ ...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~--~~~~~~~~~i~i~~~~~~~~~-~~s~l~g~~~-~~~G~~~~g~l~~~~~~---~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSRLIGAPP-GYVGYEEGGQLTEAVRR---RPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSG-GGGGC---------------CHHHHHHH---CSS
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhccchh-HHHHHcCCCC-CCcCccccchHHHHHHh---CCC
Confidence 4788999999999999999998 332211233445443322110 0001110000 00000000112222222 234
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcc
Q 040680 86 YLLVLDDVWIENCDEWLKLETLLRN 110 (459)
Q Consensus 86 ~LlvlDdv~~~~~~~~~~l~~~l~~ 110 (459)
.+|+||++...+.+....+...+..
T Consensus 662 ~vl~lDEi~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 662 SVILFDEIEKAHPDVFNILLQILDD 686 (854)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHTT
T ss_pred eEEEEecccccCHHHHHHHHHHhcc
Confidence 6899999977666666666666653
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.09 E-value=0.0031 Score=52.96 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|++|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 457899999999999999997554
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.08 E-value=0.003 Score=54.90 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=22.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+...+|+|+|++|+|||||++.++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 280
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.08 E-value=0.0032 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.9
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|-.+.+|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999987
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.06 E-value=0.0039 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|+|+.|+||||+|+.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.06 E-value=0.0035 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|+|+|+.|+||||+|+.++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 283
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.05 E-value=0.034 Score=53.34 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=21.1
Q ss_pred ccCCCccceEeecCCCCccccCc-ccccccCCCeeccCC
Q 040680 271 SISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNG 308 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~ 308 (459)
.|.++.+|+.+.+..+ +..++. .|.++.+|+.+++..
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 4566677777776644 333433 455566666665543
No 284
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.03 E-value=0.0037 Score=54.16 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.03 E-value=0.034 Score=53.72 Aligned_cols=90 Identities=9% Similarity=-0.028 Sum_probs=47.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhcccc---CCccCHHHHHHHHHh
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYRE---FSKHDLNKLQEVHHQ 79 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 79 (459)
.+++|.++|.+|+||||++..++. .....=..+..++..... ...+.+.......+.+. ....+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 478999999999999999999987 343332344445443221 22233333334333221 112233333222223
Q ss_pred hcC-CceEEEEEeCCCC
Q 040680 80 KID-RKKYLLVLDDVWI 95 (459)
Q Consensus 80 ~l~-~~~~LlvlDdv~~ 95 (459)
... ...=++|+|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 333 3334667886643
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.03 E-value=0.0035 Score=53.47 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++|+|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999975
No 287
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.02 E-value=0.0039 Score=56.02 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+||||+++.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.01 E-value=0.0037 Score=54.06 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|+|+.|+||||+++.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 289
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.01 E-value=0.0032 Score=54.50 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|+|++|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.00 E-value=0.017 Score=53.92 Aligned_cols=52 Identities=6% Similarity=-0.083 Sum_probs=36.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAF 59 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 59 (459)
+-.++.|.|.+|+||||+|..++.+... +=..++|++.-. +...+...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHHHHH
Confidence 3468999999999999999999884322 224677877643 345555555544
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0038 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=22.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....+|+|.|+.|+||||+|+.++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.99 E-value=0.0031 Score=54.34 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++++|+|++|+|||||++.+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999875
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.99 E-value=0.0034 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 294
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.98 E-value=0.0037 Score=54.30 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.96 E-value=0.0037 Score=56.19 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|.|+|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5899999999999999999986
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.96 E-value=0.0037 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|.|.|+.|+||||+|+.++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.92 E-value=0.004 Score=51.95 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|+|.|+.|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 298
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.92 E-value=0.0035 Score=53.13 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=20.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.92 E-value=0.0039 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|.|.|++|+||||+|+.++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.91 E-value=0.0054 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|.|.|++|+||||+|+.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.91 E-value=0.0097 Score=52.27 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=30.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCccc---cc-CCCeEEEEEeCCc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETV---KN-HFDLRIWMCISDI 46 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~f~~~~wv~~~~~ 46 (459)
.-.+++|+|++|+|||||++.++..... .. .-..++|++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4578999999999999999999752111 11 1346888876554
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.91 E-value=0.0089 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 303
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.90 E-value=0.009 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=20.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-..++|+|.+|+|||||++.+++
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHH
Confidence 45789999999999999999887
No 304
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.90 E-value=0.018 Score=52.95 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=27.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI 43 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~ 43 (459)
..++++|+|.+|+||||++..++. .....-..+.+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecC
Confidence 357999999999999999999987 34333234455543
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.89 E-value=0.0038 Score=52.52 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=20.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|.|.|++|+||||+|+.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 306
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.89 E-value=0.044 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..-+.|+|.+|+|||++|+.+++
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHH
Confidence 45578999999999999999987
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0046 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.86 E-value=0.0054 Score=52.87 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|+|.|+.|+||||+|+.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0047 Score=52.75 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 310
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.85 E-value=0.0044 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 311
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.85 E-value=0.0048 Score=57.09 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|-+..++|.|+|+.|+||||||..++.
T Consensus 1 ~~~m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445567999999999999999999987
No 312
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.83 E-value=0.016 Score=53.29 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=48.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhcccc---CCccCHHHHHHHHHhh
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAFVAYRE---FSKHDLNKLQEVHHQK 80 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 80 (459)
.++++++|.+|+||||++..++. .....-..+.+++..... .....+.......+..- ....+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67999999999999999999987 333332345566544322 22233334444443221 1123344443333333
Q ss_pred cC-CceEEEEEeCCCC
Q 040680 81 ID-RKKYLLVLDDVWI 95 (459)
Q Consensus 81 l~-~~~~LlvlDdv~~ 95 (459)
++ +..=++|+|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 32 2223788887643
No 313
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.81 E-value=0.0043 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+|+|+|+.|+||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.80 E-value=0.0039 Score=53.53 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|.|+.|+||||+|+.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 315
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.80 E-value=0.0073 Score=68.64 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=54.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccc-----cCCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYR-----EFSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 77 (459)
+..++|.|+|++|+|||+||.+++. ....+=..++|+++....+... ++.++.+ -.+..+.+.....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3578999999999999999999988 4433334678888877665555 3344311 01222334444444
Q ss_pred HhhcC-CceEEEEEeCCC
Q 040680 78 HQKID-RKKYLLVLDDVW 94 (459)
Q Consensus 78 ~~~l~-~~~~LlvlDdv~ 94 (459)
.+..+ .+.-++|+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 44332 356699999983
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.80 E-value=0.0049 Score=52.70 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|+|.|+.|+||||+|+.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 317
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.78 E-value=0.0024 Score=58.62 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=20.9
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|...+.+|+|.|..|+||||+|+.+..
T Consensus 1 Ms~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 666778999999999999999999887
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.77 E-value=0.0054 Score=52.55 Aligned_cols=24 Identities=8% Similarity=0.324 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|+|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357999999999999999999986
No 319
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.77 E-value=0.0047 Score=54.11 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-++++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999886
No 320
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.77 E-value=0.025 Score=54.61 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=27.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI 43 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~ 43 (459)
..++|+++|.+|+||||++..++. .....-..+..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeec
Confidence 367999999999999999999987 44433234455544
No 321
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.75 E-value=0.026 Score=54.57 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEE
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMC 42 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 42 (459)
.+++|.++|.+|+||||++..++. ....+-..++.++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~--~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR--YFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 468999999999999999999887 3333322344444
No 322
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.75 E-value=0.025 Score=56.31 Aligned_cols=52 Identities=6% Similarity=-0.064 Sum_probs=36.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC-CCeEEEEEeCCcccHHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH-FDLRIWMCISDIFYHKAMLEKIIAF 59 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~ 59 (459)
.-.++.|.|.+|+|||+||.+++.+ ...+ =..++|++.... ..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~s--~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEES--VEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSSC--HHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccCC--HHHHHHHHHHH
Confidence 4568999999999999999999874 3322 236788876553 45555555443
No 323
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.74 E-value=0.0057 Score=52.75 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|.+|+||||+|+.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.74 E-value=0.0051 Score=53.01 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 325
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.74 E-value=0.0059 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.+|+|.|..|+||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.73 E-value=0.0048 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|.|.|+.|+||||+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 327
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.72 E-value=0.0056 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999976
No 328
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.71 E-value=0.0059 Score=53.11 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.71 E-value=0.0024 Score=60.39 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=57.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
...+|+|+|+.|+||||+.+.+.. .+.......++. +.+..... .......+. +.....+.......+.+.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t-~ed~~e~~--~~~~~~~v~-q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILT-IEDPIEFV--HESKKCLVN-QREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEE-EESSCCSC--CCCSSSEEE-EEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEE-ccCcHHhh--hhcccccee-eeeeccccCCHHHHHHHHhhh
Confidence 356899999999999999999876 332221222221 11111000 000000000 000001111233467777888
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh
Q 040680 84 KKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER 125 (459)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 125 (459)
.+=+|++|...+ .+.++.+... ...|..|++|+.+..
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~---~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTA---AETGHLVFGTLHTTS 232 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHH---HHTTCEEEEEESCSS
T ss_pred CcCEEecCCCCC--HHHHHHHHHH---HhcCCEEEEEEccCh
Confidence 888999999953 2333333332 234667888887653
No 330
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.70 E-value=0.0068 Score=50.03 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 331
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.68 E-value=0.02 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=22.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+++|+|+.|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.67 E-value=0.0062 Score=56.47 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=22.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+...+|+|.|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3467999999999999999999987
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0066 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|.|+.|+||||+|+.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.66 E-value=0.0065 Score=52.33 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|.|.|+.|+||||+|+.++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.66 E-value=0.0065 Score=54.24 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+||||||+.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 336
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.65 E-value=0.0061 Score=53.36 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.8
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.-++++|+|++|+|||||.+.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3457999999999999999999886
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.65 E-value=0.0063 Score=54.91 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|.|.|++|+||||+|+.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 338
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.64 E-value=0.0066 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999973
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.64 E-value=0.0063 Score=51.59 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 340
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.62 E-value=0.0042 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=17.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|.|.|+.|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 341
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.61 E-value=0.061 Score=54.52 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 342
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.0065 Score=53.58 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=21.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.+|+|.|++|+||||+|+.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 343
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.59 E-value=0.072 Score=51.66 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=36.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIAF 59 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 59 (459)
.-++|.|.+|+|||+|+.+++++. .+.+-+.++++-++... ...++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 467899999999999999998731 12233556777666553 455666666553
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.56 E-value=0.011 Score=52.54 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.9
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999987
No 345
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.54 E-value=0.012 Score=52.23 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=27.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEE
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMC 42 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~ 42 (459)
.-.+++|+|+.|+|||||.+.++.- .....+.++++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~~ 65 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYID 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEEC
Confidence 3468999999999999999999872 22334566653
No 346
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.54 E-value=0.0087 Score=62.92 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=47.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCH---HHHHHHHHhhcC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDL---NKLQEVHHQKID 82 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~l~ 82 (459)
..+.++|++|+|||++|+.+++ ... ...+.++.+....... +.+.++.+ ..-... ..+...+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~----~~~l~g~~-~g~~g~~~~~~l~~~~~~--- 555 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT----VSRLIGAP-PGYVGFDQGGLLTDAVIK--- 555 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC----CSSSCCCC-SCSHHHHHTTHHHHHHHH---
T ss_pred eEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh----HhhhcCCC-CCCcCccccchHHHHHHh---
Confidence 3688999999999999999998 332 2234444433211100 00000000 000000 011222222
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhc
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~ 109 (459)
....+++||++.....+....+...+.
T Consensus 556 ~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 556 HPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp CSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 346799999998766666666666554
No 347
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.53 E-value=0.037 Score=53.69 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=28.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccC-CCeEEEEEeC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNH-FDLRIWMCIS 44 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-f~~~~wv~~~ 44 (459)
.+++|.++|.+|+||||+|..++. ....+ =..+..++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecC
Confidence 468999999999999999999987 44433 2345555544
No 348
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.53 E-value=0.045 Score=53.31 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc-cHHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF-YHKAMLEKIIA 58 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 58 (459)
.-++|.|.+|+|||+|+.+++++. .+.+-+.++++-++... ...++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 467999999999999999998731 12334677777776654 45566666654
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.52 E-value=0.008 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 350
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.52 E-value=0.0069 Score=56.25 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999983
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.52 E-value=0.0075 Score=54.07 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999977
No 352
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.50 E-value=0.0085 Score=52.23 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++||.|.|++|+||||.|+.++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999887
No 353
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.50 E-value=0.012 Score=57.70 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-+.++|++|+|||++|+.+++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 35688999999999999999998
No 354
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.47 E-value=0.019 Score=59.86 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=42.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDR 83 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 83 (459)
+++=|.++|++|+|||.+|+++++ +.... ++.++.. +++.. ..........+.+...-+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f~~v~~~--------~l~s~-----~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIKGP--------ELLTM-----WFGESEANVREIFDKARQA 569 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----EEECCHH--------HHHTT-----TCSSCHHHHHHHHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHH--HhCCc-----eEEeccc--------hhhcc-----ccchHHHHHHHHHHHHHHc
Confidence 345678999999999999999999 43332 2333211 11111 1112222333333333345
Q ss_pred ceEEEEEeCCCC
Q 040680 84 KKYLLVLDDVWI 95 (459)
Q Consensus 84 ~~~LlvlDdv~~ 95 (459)
.+++|++|+++.
T Consensus 570 ~P~IifiDEiDs 581 (806)
T 3cf2_A 570 APCVLFFDELDS 581 (806)
T ss_dssp CSEEEECSCGGG
T ss_pred CCceeechhhhH
Confidence 789999999853
No 355
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.46 E-value=0.0084 Score=51.76 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=20.2
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|+.|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.44 E-value=0.017 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 357
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.42 E-value=0.009 Score=51.42 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+||||+|+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.42 E-value=0.0079 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.41 E-value=0.0081 Score=49.93 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.8
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 360
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.41 E-value=0.081 Score=51.54 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=34.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIA 58 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 58 (459)
+-.++.|.|.+|+||||+|.+++.+...+ =..++|++.... ...+...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHH
Confidence 45689999999999999999999843322 236777765543 3334444433
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.40 E-value=0.0099 Score=49.49 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|.|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.38 E-value=0.0076 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 363
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.38 E-value=0.0079 Score=63.44 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+.|.|+|++|+||||||+.+++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356789999999999999999998
No 364
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.38 E-value=0.0095 Score=52.96 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=30.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
.-.++.|.|.+|+||||||.+++.. ....=..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4568999999999999999988763 2222246788876543
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.37 E-value=0.0091 Score=55.37 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=21.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+.+|+|.|+.|+||||+|+.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 355999999999999999999876
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.37 E-value=0.0079 Score=52.74 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=22.1
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+....|.|.|+.|+||||+|+.++.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999987
No 367
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.37 E-value=0.07 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.4
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+.++|+|.+|+|||+|+.++++.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 46789999999999999999883
No 368
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.36 E-value=0.0081 Score=53.55 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=28.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
.-.+++|+|++|+|||||++.++..... ..-..++|+....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccC
Confidence 4578999999999999999998842121 1223556665443
No 369
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.36 E-value=0.0098 Score=51.67 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|.|.|+.|+||||+|+.++.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 370
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.35 E-value=0.013 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.35 E-value=0.0082 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.132 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...|.|.|+.|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.34 E-value=0.0099 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+||||+|+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 373
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.33 E-value=0.013 Score=53.21 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999986
No 374
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.32 E-value=0.014 Score=54.01 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=30.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
...++|+|+|-||+||||+|..++. .....=..+.-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 3568999999999999999999887 4444333566777554
No 375
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.31 E-value=0.015 Score=52.50 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.30 E-value=0.0061 Score=52.18 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=21.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
|..+.+.|+|++|+|||++|..+++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999988
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.30 E-value=0.0098 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999987
No 378
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.30 E-value=0.006 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHh-C
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVY-N 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~-~ 27 (459)
-++++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 379
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.29 E-value=0.015 Score=52.38 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 380
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.27 E-value=0.2 Score=47.47 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeeec
Q 040680 273 SKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYFG 351 (459)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 351 (459)
.....|..+.+..+ +..++. .+.+..+|+.+.+..+ +..++.. .+..+.+|+.+.+..+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~----------------aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSF----------------LLQNCTALKTLNFYAK- 273 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTT----------------TTTTCTTCCEEEECCC-
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCcc----------------ccceeehhcccccccc-
Confidence 33444444444433 333322 3445555665555432 3444322 4555678888887654
Q ss_pred ccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccc
Q 040680 352 VRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRR 411 (459)
Q Consensus 352 ~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 411 (459)
...++ .|..+++|+.+.+.+ ..++.++...|. .+.+|+.+.|.. +++.+...
T Consensus 274 --i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~---~c~~L~~i~lp~--~l~~I~~~ 327 (379)
T 4h09_A 274 --VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFM---DCVKLSSVTLPT--ALKTIQVY 327 (379)
T ss_dssp --CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTT---TCTTCCEEECCT--TCCEECTT
T ss_pred --ceeccccccccccccccccccc-cccceehhhhhc---CCCCCCEEEcCc--cccEEHHH
Confidence 22333 378888999999875 357777766655 677899988853 46666544
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.25 E-value=0.023 Score=53.14 Aligned_cols=81 Identities=10% Similarity=0.069 Sum_probs=45.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccCCccCHHHHHHHHHhhcCCc
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREFSKHDLNKLQEVHHQKIDRK 84 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 84 (459)
..+++|+|..|+|||||++.+.. .+.. -.+.+.+........... . +.+..- .+ ........+.+.+...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g--~~~~-~~g~i~i~~~~e~~~~~~-~---~~i~~~-~g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIME--FIPK-EERIISIEDTEEIVFKHH-K---NYTQLF-FG--GNITSADCLKSCLRMR 240 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGG--GSCT-TSCEEEEESSCCCCCSSC-S---SEEEEE-CB--TTBCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC--CCcC-CCcEEEECCeeccccccc-h---hEEEEE-eC--CChhHHHHHHHHhhhC
Confidence 46899999999999999999987 3322 245666653322110000 0 000000 00 1122344555667777
Q ss_pred eEEEEEeCCCC
Q 040680 85 KYLLVLDDVWI 95 (459)
Q Consensus 85 ~~LlvlDdv~~ 95 (459)
+=+|++|.+..
T Consensus 241 p~ilildE~~~ 251 (330)
T 2pt7_A 241 PDRIILGELRS 251 (330)
T ss_dssp CSEEEECCCCS
T ss_pred CCEEEEcCCCh
Confidence 77899999855
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.24 E-value=0.0086 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|+|+.|+||||+++.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 383
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.22 E-value=0.024 Score=59.58 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..-|.++|++|+|||++|+.+++
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999988
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.21 E-value=0.011 Score=51.83 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.18 E-value=0.011 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 386
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.17 E-value=0.015 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.17 E-value=0.0096 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 47899999999999999998863
No 388
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.16 E-value=0.012 Score=52.44 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 389
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.16 E-value=0.018 Score=51.93 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999987
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.15 E-value=0.0052 Score=53.41 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=20.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
++|+|.|+.|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 391
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.13 E-value=0.17 Score=48.04 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred ccCCCccceEeecCCCCccccCc-ccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeee
Q 040680 271 SISKLKHLWYLNLPGNGITKLPN-SVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFY 349 (459)
Q Consensus 271 ~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 349 (459)
.+.+...|+.+.+..+ ++.+.. .+.+..+|+.+.+.. .+..++.. .+..+.+|+.+.+.+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~----------------aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYL----------------LCSGCSNLTKVVMDN 295 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTT----------------TTTTCTTCCEEEECC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccc----------------ccccccccccccccc
Confidence 4566777888877665 666644 566777888888764 25666543 455668888888876
Q ss_pred ecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccc
Q 040680 350 FGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWL 409 (459)
Q Consensus 350 ~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 409 (459)
+ ....++ .|.++.+|+.+.|.. +++.++...|. .+++|+.+.+.. +++.+.
T Consensus 296 ~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~---~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 296 S--AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFK---NCKALSTISYPK--SITLIE 348 (379)
T ss_dssp T--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT---TCTTCCCCCCCT--TCCEEC
T ss_pred c--ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhh---CCCCCCEEEECC--ccCEEc
Confidence 5 233333 378888888888863 57777765554 566777776642 344443
No 392
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.12 E-value=0.013 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=21.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++|.|.|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999987
No 393
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.11 E-value=0.056 Score=47.68 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=46.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcc-cccCCC-eEEEEEeCCcccHHHHHHHHHHHhcccc------------------
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDET-VKNHFD-LRIWMCISDIFYHKAMLEKIIAFVAYRE------------------ 64 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 64 (459)
.+.+.|.|..|+||||+...+.-+.. ...... ..+.+-.........+.+.+...++...
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH 155 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSS
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCC
Confidence 46899999999999986655543211 112221 2233323332233333444443332110
Q ss_pred --CCccCHHHHHHHHHhhcCCceEEEEEeCCCC
Q 040680 65 --FSKHDLNKLQEVHHQKIDRKKYLLVLDDVWI 95 (459)
Q Consensus 65 --~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 95 (459)
..-...+.+...+...+.+-+ ++|+|.+..
T Consensus 156 ~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 156 ASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp SEEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred CeEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 001234556566655454443 789999965
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.10 E-value=0.011 Score=54.97 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|.|+.|+||||||..++.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHH
Confidence 36999999999999999999887
No 395
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.09 E-value=0.019 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 396
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.09 E-value=0.052 Score=53.13 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=30.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCccc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFY 48 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~ 48 (459)
...+++|+|.+|+|||||++.++. ..... .+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~-~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQQ-GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHHT-TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhhc-CCeEEEecCcccc
Confidence 457999999999999999999987 33322 3555665444443
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.07 E-value=0.012 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.3
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 398
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.06 E-value=0.02 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 399
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.05 E-value=0.019 Score=51.04 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.04 E-value=0.013 Score=53.94 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=28.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF 47 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~ 47 (459)
...+++|+|+.|+||||+++.++. ..... .+.+++...+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag--~l~~~-~g~V~l~g~d~~ 139 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH--RLKNE-GTKVLMAAGDTF 139 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH--HHHHT-TCCEEEECCCCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHHc-CCeEEEEeeccc
Confidence 357999999999999999999987 33322 344555444433
No 401
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.03 E-value=0.016 Score=53.89 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=28.0
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEe
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCI 43 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~ 43 (459)
..++|+|+|.+|+||||++..++. .....-..+.+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeC
Confidence 468999999999999999999987 44333234455543
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.02 E-value=0.0072 Score=50.60 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=20.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 403
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.01 E-value=0.021 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.00 E-value=0.013 Score=54.26 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999887
No 405
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.98 E-value=0.0088 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|.|+|++|+||||+|+.++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 406
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.98 E-value=0.02 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 407
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.98 E-value=0.013 Score=51.09 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 408
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.94 E-value=0.017 Score=47.70 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 409
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.94 E-value=0.014 Score=53.49 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 410
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.93 E-value=0.015 Score=49.83 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=23.8
Q ss_pred CCccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 1 MCVIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 1 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
|-+..-.|+|+|.+|+|||||.+.+...
T Consensus 1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 1 MYDYLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4555667899999999999999999874
No 411
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.93 E-value=0.0066 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+-|.|+|++|+|||++|+.+++
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 44578999999999999999998
No 412
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.92 E-value=0.014 Score=51.67 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 413
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.91 E-value=0.019 Score=51.93 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=28.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
++|+|.|-||+||||+|..++. ....+=..+.-++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCCC
Confidence 6888999999999999999987 4443333566676543
No 414
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.90 E-value=0.07 Score=52.06 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=36.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAF 59 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 59 (459)
.-.++.|.|.+|+|||++|.+++.+.... +=..++|++.... ...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~--~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMP--AAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSC--HHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCC--HHHHHHHHHHH
Confidence 45689999999999999999998842221 1236788876543 44555555443
No 415
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.89 E-value=0.023 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999987
No 416
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.89 E-value=0.022 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 417
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.88 E-value=0.015 Score=52.29 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=54.2
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc--CCccCHHHHHHHHHhhc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE--FSKHDLNKLQEVHHQKI 81 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l 81 (459)
...+++|+|+.|+||||+++.+.. .....+.+.+++.-....... +.....+.... ...... ...+.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~---~~~~~~v~q~~~gl~~~~l---~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVF---KHKKSIVNQREVGEDTKSF---ADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCC---CCSSSEEEEEEBTTTBSCH---HHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeec---CCcceeeeHHHhCCCHHHH---HHHHHHHH
Confidence 457899999999999999999887 333222344444321110000 00000000000 011122 33344444
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchh
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSER 125 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 125 (459)
...+=+|++|... +.+....+... ...|..|++||.+..
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~---~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRA---AETGHLVFGTLHTNT 134 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHH---HHTTCEEEEEECCSS
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHH---HccCCEEEEEeCcch
Confidence 4455588889885 22333222222 234667888887643
No 418
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.83 E-value=0.091 Score=50.32 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=17.7
Q ss_pred CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecC
Q 040680 360 LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILG 401 (459)
Q Consensus 360 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~ 401 (459)
|.++.+|+.+.|.. +++.++...|. .+++|+.+.+.+
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~aF~---~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESAFS---NCTALNNIEYSG 366 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGGGT---TCTTCCEEEESS
T ss_pred hhCCCCCCEEEECc--ccCEEhHhHhh---CCCCCCEEEECC
Confidence 45555555555542 34444443333 445555555543
No 419
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.83 E-value=0.021 Score=50.93 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999987
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.83 E-value=0.016 Score=53.46 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+++|.|.|++|+||||+|+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999986
No 421
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.82 E-value=0.039 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=20.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+.|.|.+|.|||+++..++.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999999887
No 422
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.82 E-value=0.024 Score=47.26 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=23.2
Q ss_pred CccCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 2 CVIERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 2 ~~~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-+....|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677899999999999999999875
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.81 E-value=0.016 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++++|.|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 424
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.79 E-value=0.023 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999987
No 425
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.77 E-value=0.016 Score=56.09 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+++|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.72 E-value=0.011 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||++.++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 427
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.70 E-value=0.017 Score=53.10 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=22.3
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.-.+++|+|+.|+|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4457899999999999999999886
No 428
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.69 E-value=0.052 Score=52.35 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=48.8
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccc-cCCC-eEEEEEeCCc-ccHHHHHHHHHHH--hccc----cCCccCH-H----
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVK-NHFD-LRIWMCISDI-FYHKAMLEKIIAF--VAYR----EFSKHDL-N---- 71 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~----~~~~~~~-~---- 71 (459)
.-++|.|.+|+|||+|+.+++++.... ++=+ .++++-++.. ....++.+++... +... ....... .
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 346899999999999999999843321 1111 4555555543 3555666655442 1100 0111111 1
Q ss_pred -HHHHHHHhhc---CCceEEEEEeCC
Q 040680 72 -KLQEVHHQKI---DRKKYLLVLDDV 93 (459)
Q Consensus 72 -~~~~~l~~~l---~~~~~LlvlDdv 93 (459)
...-.+.+++ .++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1112233444 378999999998
No 429
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.68 E-value=0.16 Score=48.51 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=48.4
Q ss_pred cCCCCCcceEeeeeecccccCCC--CCCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCccccccc
Q 040680 336 LKPHKNLRELSIFYFGVRCQYIP--QLEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRID 413 (459)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 413 (459)
+..+.+|+.+.+..+ ...++ .|..+.+|+.++|.. .++.++...|. .+.+|+.+.|.. ++..+....-
T Consensus 293 F~~~~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~---~c~~L~~i~lp~--~l~~I~~~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS---VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR---GCTSLSNINFPL--SLRKIGANAF 362 (394)
T ss_dssp TTTCTTCCEEEECTT---CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTTB
T ss_pred ccccccccccccccc---cceechhhhcCCCCCCEEEeCC--cccEEhHHhcc---CCCCCCEEEECc--cccEehHHHh
Confidence 445567777776543 22222 266777788777763 46666655544 566777777753 3555544322
Q ss_pred cCCCCCCcCCCCCCCCCccceeeecC
Q 040680 414 NDADGSKIDMIEPPSFPCLSELDISG 439 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~L~~L~l~~ 439 (459)
. .+++|+.+++..
T Consensus 363 ~-------------~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 Q-------------GCINLKKVELPK 375 (394)
T ss_dssp T-------------TCTTCCEEEEEG
T ss_pred h-------------CCCCCCEEEECC
Confidence 1 566777777754
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.67 E-value=0.017 Score=54.81 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.5
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+..++++|+|++|+|||||++.++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999999987
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.67 E-value=0.016 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-+++.|+|.+|+||||||..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 432
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.66 E-value=0.017 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999998
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.66 E-value=0.019 Score=54.13 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=29.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF 47 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~ 47 (459)
...+++|+|+.|+||||+++.++. ..... .+.+.+...+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag--~l~~~-~G~V~l~g~D~~ 196 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH--RLKNE-GTKVLMAAGDTF 196 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH--HHHHT-TCCEEEECCCCS
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh--hcccc-CCEEEEeccccc
Confidence 457999999999999999999987 33322 344555444443
No 434
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.64 E-value=0.04 Score=62.79 Aligned_cols=86 Identities=12% Similarity=-0.008 Sum_probs=56.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
++-+++.|+|.+|+||||||.+++.+ ....-..++|++.....+... ++.++.+. .+..+.++..+.+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 45679999999999999999999883 333334788998777665432 44454321 1234555555555
Q ss_pred Hhhc-CCceEEEEEeCCCC
Q 040680 78 HQKI-DRKKYLLVLDDVWI 95 (459)
Q Consensus 78 ~~~l-~~~~~LlvlDdv~~ 95 (459)
.+.. ..+.-++|+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 4332 23455899998853
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.64 E-value=0.031 Score=49.19 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+||||+++.++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.64 E-value=0.017 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.+.|.|.|++|+||||||.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999874
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.16 Score=51.40 Aligned_cols=122 Identities=7% Similarity=0.005 Sum_probs=64.3
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccc-cC-C--CeEEEEEeCC--c--ccH--------------HHHHHHHHHHhccc
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVK-NH-F--DLRIWMCISD--I--FYH--------------KAMLEKIIAFVAYR 63 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~-f--~~~~wv~~~~--~--~~~--------------~~~~~~i~~~l~~~ 63 (459)
.+++|+|+.|+|||||++.++.-..-. +. . ..+.++.-.. . .+. .....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998632111 10 0 0122322110 0 011 12223344444422
Q ss_pred c-----CCccCH-HHHHHHHHhhcCCceEEEEEeCCCC-CChhhHHHHHHhhccC--CCCcEEEEeecchhhh
Q 040680 64 E-----FSKHDL-NKLQEVHHQKIDRKKYLLVLDDVWI-ENCDEWLKLETLLRNS--AGGSNIIVATRSERVA 127 (459)
Q Consensus 64 ~-----~~~~~~-~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~~~ 127 (459)
+ ...-+- +...-.+.+.+..++=+|++|.--. .|......+...+... ..|..||++|.+...+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 2 111222 3333455677777888999997533 2333334444444432 2366788888876543
No 438
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.59 E-value=0.014 Score=55.52 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+.+.|.++|++|+|||++|+.+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999998
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.58 E-value=0.019 Score=57.56 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=27.9
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
.-.+++|.|.+|+|||||++.++.. ....=..++++...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEEEeC
Confidence 3468999999999999999999863 221112356665543
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.58 E-value=0.02 Score=50.56 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=20.9
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...|.|.|+.|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 441
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.57 E-value=0.096 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.8
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++|+|+|.+|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 442
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.55 E-value=0.024 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.6
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356899999999999999999976
No 443
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.54 E-value=0.039 Score=62.02 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=55.7
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
+.-+++.|+|.+|+||||||.+++.+ ....=..++|++.....+... ++.++.+. ....+.++..+.+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 45689999999999999999999883 333335789998877766532 44444221 1223455555554
Q ss_pred HhhcC-CceEEEEEeCCCC
Q 040680 78 HQKID-RKKYLLVLDDVWI 95 (459)
Q Consensus 78 ~~~l~-~~~~LlvlDdv~~ 95 (459)
....+ .+.-++|+|.+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 43332 3455899999854
No 444
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.53 E-value=0.02 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999998
No 445
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.52 E-value=0.27 Score=48.08 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=34.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHH
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKI 56 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 56 (459)
.-.++.|.|.+|+||||||.+++.+.... .-..++|++.... ...+...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s--~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMS--AQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSC--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC--HHHHHHHH
Confidence 45689999999999999999999842222 1236788876543 34444444
No 446
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.52 E-value=0.075 Score=51.83 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=31.9
Q ss_pred eeEEeecCCCCcHHHHH-HHHhCCcccccCCC-eEEEEEeCCcc-cHHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVT-QLVYNDETVKNHFD-LRIWMCISDIF-YHKAMLEKIIA 58 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~ 58 (459)
.-++|.|.+|+|||+|| ..+++. . .-+ .++++-+++.. ...++.+.+..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhh
Confidence 45789999999999995 477773 2 234 34566666543 45555555544
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.51 E-value=0.02 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.7
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...|.|.|+.|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 448
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.51 E-value=0.021 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.0
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..++.+.|.||+||||++..++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH
Confidence 56889999999999999999985
No 449
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.51 E-value=0.019 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.6
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|.|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 450
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.50 E-value=0.024 Score=51.89 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=28.2
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
++|+|.|-||+||||+|..++. .....=..+..|+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~--~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 7889999999999999999987 4433323566666543
No 451
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.49 E-value=0.022 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.5
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
..+|+|+|.+|+|||||+..+...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999999999873
No 452
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.48 E-value=0.037 Score=52.00 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=31.1
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccc--cCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVK--NHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~f~~~~wv~~~~~ 46 (459)
+..+++.+.|.||+||||+|..++. ... ..=..+.-++....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCC
Confidence 4578999999999999999999987 444 33345666666543
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.47 E-value=0.019 Score=49.87 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=19.4
Q ss_pred eEEeecCCCCcHHHHHHHHhC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.|.|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 454
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.45 E-value=0.03 Score=50.40 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=25.8
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEE
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWM 41 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv 41 (459)
-.+++|+|+.|+|||||.+.++. .. ...+.+++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G--l~--p~~G~I~~ 62 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG--LL--PYSGNIFI 62 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT--SS--CCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhC--CC--CCCcEEEE
Confidence 35899999999999999999987 32 33455554
No 455
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.44 E-value=0.021 Score=54.39 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.++|+|.|+.|+||||||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 57899999999999999999986
No 456
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.43 E-value=0.14 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999876
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.43 E-value=0.037 Score=62.19 Aligned_cols=84 Identities=12% Similarity=0.013 Sum_probs=57.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhcccc-----CCccCHHHHHHHH
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYRE-----FSKHDLNKLQEVH 77 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 77 (459)
|.-++|-|+|+.|+||||||.++.. +.+..=..++|+++-...+..- ++.++.+- .++...++.....
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 4568999999999999999999998 5666656788998877766654 56665331 1233334455544
Q ss_pred HhhcCC-ceEEEEEeCC
Q 040680 78 HQKIDR-KKYLLVLDDV 93 (459)
Q Consensus 78 ~~~l~~-~~~LlvlDdv 93 (459)
...++. ..-++|+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 444443 4458889987
No 458
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.42 E-value=0.059 Score=51.96 Aligned_cols=88 Identities=8% Similarity=0.114 Sum_probs=48.6
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccc--------cCCC-eEEEEEeCCc-ccHHHHHHHHHHH--hcc-----ccCCcc
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVK--------NHFD-LRIWMCISDI-FYHKAMLEKIIAF--VAY-----REFSKH 68 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~ 68 (459)
.-++|.|.+|+|||+|+.+++++.... ++=+ .++++-++.. ....++.+++... +.. ......
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 356899999999999999999853331 1112 4555555543 3455555554332 110 001111
Q ss_pred CHHH-----HHHHHHhhc---CCceEEEEEeCC
Q 040680 69 DLNK-----LQEVHHQKI---DRKKYLLVLDDV 93 (459)
Q Consensus 69 ~~~~-----~~~~l~~~l---~~~~~LlvlDdv 93 (459)
.... ..-.+.+++ .++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 112233444 378999999998
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.40 E-value=0.015 Score=52.54 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=21.9
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.....|+|.|+.|+||||+|+.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998887
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.39 E-value=0.021 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.0
Q ss_pred eEEeecCCCCcHHHHHHHHhCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 461
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.39 E-value=0.031 Score=52.55 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999986
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.38 E-value=0.035 Score=47.66 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=29.7
Q ss_pred eeEEee-cCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCccc
Q 040680 6 RFFLSM-EIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFY 48 (459)
Q Consensus 6 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~ 48 (459)
++|+|+ +-||+||||+|..++. ....+-..+..++.....+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCC
Confidence 678887 7799999999999988 4444334577777664433
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.36 E-value=0.019 Score=50.59 Aligned_cols=23 Identities=22% Similarity=-0.022 Sum_probs=21.4
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
..+|+|.|+.|+||||+++.++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999887
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.35 E-value=0.091 Score=53.16 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.4
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.-.+++|+|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 356899999999999999998876
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.35 E-value=0.021 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 466
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.34 E-value=0.037 Score=43.83 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=27.5
Q ss_pred EeecCCCCcc--ccCcccccccCCCeeccCCCccccccccccccCCCCCcchHHHhhccCCCCCcceEeeeee
Q 040680 280 YLNLPGNGIT--KLPNSVSKLLNLETPDCNGCRSLAELPRILEGCGHTDVDVEALLDDLKPHKNLRELSIFYF 350 (459)
Q Consensus 280 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (459)
.++.+++.++ .+|..+ ..+|++|+|++|+ +..+|.. .|..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~----------------~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPG----------------LLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTT----------------TGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChh----------------hhhhccccCEEEecCC
Confidence 4555555555 555432 2346666666643 5555543 3344456666666555
No 467
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.32 E-value=0.028 Score=48.96 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=25.4
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCC
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISD 45 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~ 45 (459)
.|.+.|.||+||||+|..++. ....+-..+.++++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH--AQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCC
Confidence 478899999999999999988 3333222344454543
No 468
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.31 E-value=0.017 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...|.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999998
No 469
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.30 E-value=0.33 Score=46.35 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=57.4
Q ss_pred ccCCCCCcceEeeeeecccccCCCC--CCCCCCCcEEecCCCcCcceeccccCcCCCCCCCcCEEeecCCCCCCcccccc
Q 040680 335 DLKPHKNLRELSIFYFGVRCQYIPQ--LEQLPSLKSLTLSWLDALVYICFSSIASRTRFSSLEYISILGCPELKGWLRRI 412 (459)
Q Consensus 335 ~l~~l~~L~~L~l~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 412 (459)
.+..+.+|+.+.+... ...++. |..+.+|+.+.|.. .++.++...|. .+.+|+.+.|-. ++..+....
T Consensus 283 aF~~c~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~---~C~~L~~i~ip~--sv~~I~~~a 352 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR---ITELPESVFAGCISLKSIDIPE--GITQILDDAFA---GCEQLERIAIPS--SVTKIPESA 352 (394)
T ss_dssp TTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEEECT--TCCBCCGGG
T ss_pred ccccccccccccCCCc---ccccCceeecCCCCcCEEEeCC--cccEehHhHhh---CCCCCCEEEECc--ccCEEhHhH
Confidence 4556688888877543 333333 78888999999874 57778776655 678899998853 566665443
Q ss_pred ccCCCCCCcCCCCCCCCCccceeeecCC
Q 040680 413 DNDADGSKIDMIEPPSFPCLSELDISGC 440 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c 440 (459)
-. .+++|+.+++.++
T Consensus 353 F~-------------~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 FS-------------NCTALNNIEYSGS 367 (394)
T ss_dssp GT-------------TCTTCCEEEESSC
T ss_pred hh-------------CCCCCCEEEECCc
Confidence 32 6788999888764
No 470
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.28 E-value=0.024 Score=48.98 Aligned_cols=92 Identities=10% Similarity=0.093 Sum_probs=47.3
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHH-----HHHHHHHHHhccccCCccCHHHHHHHHHhhc
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHK-----AMLEKIIAFVAYREFSKHDLNKLQEVHHQKI 81 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 81 (459)
+|.|.|++|+||+|.|+.++. + | +...++.++-.... .+...+-..+. .....+.+.....+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~--~----~-g~~~istGdllR~~i~~~t~lg~~~~~~~~--~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK--E----K-GFVHISTGDILREAVQKGTPLGKKAKEYME--RGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--H----H-CCEEEEHHHHHHHHHHHTCHHHHHHHHHHH--HTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHH--H----H-CCeEEcHHHHHHHHHHhcChhhhhHHHHHh--cCCcCCHHHHHHHHHHhh
Confidence 578999999999999999887 2 2 12234332211000 00111111111 111233445666777777
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhhc
Q 040680 82 DRKKYLLVLDDVWIENCDEWLKLETLLR 109 (459)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~ 109 (459)
..... +|||+.=.. ..+.+.+...+.
T Consensus 73 ~~~~~-~ilDGfPRt-~~Qa~~l~~~l~ 98 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRT-VKQAEALDEMLE 98 (206)
T ss_dssp CSSSC-EEEESCCCS-HHHHHHHHHHHH
T ss_pred ccCCc-eEecCCchh-HHHHHHHHhhHH
Confidence 66554 688997332 234444444443
No 471
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.28 E-value=0.026 Score=49.94 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.5
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...+|+|.|+.|+||||+|+.++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 472
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.27 E-value=0.067 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+++.|.|.+|.||||++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999887
No 473
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.26 E-value=0.048 Score=50.91 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=31.7
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCccc
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFY 48 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~ 48 (459)
..+++.+.|.||+||||+|..++. .....-..+.-++.....+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCC
Confidence 468899999999999999999987 4444434566676664433
No 474
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.25 E-value=0.075 Score=45.47 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=30.5
Q ss_pred eEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHH
Q 040680 7 FFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKII 57 (459)
Q Consensus 7 vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 57 (459)
.|+|=|.-|+||||.++.+++ ....+-..+++..--......+....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 478899999999999999988 5554433444443322223334444433
No 475
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.23 E-value=0.024 Score=48.27 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.7
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
-.|+|+|.+|+|||||.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.20 E-value=0.068 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.3
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
...|.|-|+.|+||||+++.++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 477
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.17 E-value=0.089 Score=51.34 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=32.3
Q ss_pred eeEEeecCCCCcHHHHH-HHHhCCcccccCCC-eEEEEEeCCcc-cHHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVT-QLVYNDETVKNHFD-LRIWMCISDIF-YHKAMLEKIIA 58 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~ 58 (459)
..++|.|.+|+|||+|| ..+++.. .-+ .++++-+++.. .+.++.+.+..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 45789999999999996 5777742 234 34566666543 45555555544
No 478
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.17 E-value=0.029 Score=47.89 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=22.4
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
.+..+|+|+|+.|+||+++|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 5678999999999999999988765
No 479
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.15 E-value=0.03 Score=55.75 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=22.5
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
....+|.++|++|.||||+|+.++.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999987
No 480
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.10 E-value=0.028 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.++|+|+|.+|+|||||+..+...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999998873
No 481
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.06 E-value=0.046 Score=52.98 Aligned_cols=88 Identities=8% Similarity=0.090 Sum_probs=49.0
Q ss_pred eeEEeecCCCCcHHHHHHHHhCCcccccCC--CeEEEEEeCCc-ccHHHHHHHHHHHhccc------cCCccCH------
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYNDETVKNHF--DLRIWMCISDI-FYHKAMLEKIIAFVAYR------EFSKHDL------ 70 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~~------ 70 (459)
.-++|.|.+|+|||+|+.+++++......- +.++++-++.. ....++.+++...=... .......
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 456799999999999999998853321111 24555555443 35556666665431000 0011111
Q ss_pred HHHHHHHHhhcC---CceEEEEEeCC
Q 040680 71 NKLQEVHHQKID---RKKYLLVLDDV 93 (459)
Q Consensus 71 ~~~~~~l~~~l~---~~~~LlvlDdv 93 (459)
....-.+.++++ ++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111122334443 68999999997
No 482
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.06 E-value=0.033 Score=46.94 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.6
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 483
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.99 E-value=0.044 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 484
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.97 E-value=0.023 Score=50.53 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=30.0
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCc
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDI 46 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~ 46 (459)
+.-.++.|.|.+|+|||++|.+++.+. ....-..++|++....
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 345789999999999999999987531 2222345667765543
No 485
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.96 E-value=0.061 Score=46.49 Aligned_cols=40 Identities=13% Similarity=-0.043 Sum_probs=28.9
Q ss_pred eEEe-ecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccH
Q 040680 7 FFLS-MEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYH 49 (459)
Q Consensus 7 vv~I-~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~ 49 (459)
+|+| -+-||+||||+|..++. .....- .+..++.....+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~--~la~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA--YLALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHTTS-CEEEEEECTTCHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH--HHHhcC-CEEEEECCCCCCH
Confidence 5666 48899999999999987 444444 6777777655443
No 486
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.90 E-value=0.05 Score=51.28 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999986
No 487
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.88 E-value=0.052 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46899999999999999999986
No 488
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.87 E-value=0.047 Score=51.77 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 46899999999999999999987
No 489
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.86 E-value=0.047 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 46899999999999999999986
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.85 E-value=0.032 Score=51.00 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.1
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999873
No 491
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.83 E-value=0.052 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999986
No 492
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.83 E-value=0.072 Score=52.03 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred eeEEeecCCCCcHHHHH-HHHhCCcccccCCC-eEEEEEeCCcc-cHHHHHHHHH
Q 040680 6 RFFLSMEIGGLGKTAVT-QLVYNDETVKNHFD-LRIWMCISDIF-YHKAMLEKII 57 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~ 57 (459)
.-++|.|.+|+|||+|| ..+++.. . -+ .++++-+++.. ...++.+.+.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~ 214 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQ 214 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTG
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHH
Confidence 45789999999999995 5777742 2 34 34566566543 3444444443
No 493
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.83 E-value=0.037 Score=46.09 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=21.3
Q ss_pred cCeeEEeecCCCCcHHHHHHHHhCC
Q 040680 4 IERFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 4 ~~~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
....|+|+|.+|+|||||...+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999874
No 494
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.80 E-value=0.042 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.2
Q ss_pred CeeEEeecCCCCcHHHHHHHHhC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
-.+++|.|+.|+|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999987
No 495
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.77 E-value=0.15 Score=54.27 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=19.8
Q ss_pred CeeEEeecCCCCcHHHHHHHH
Q 040680 5 ERFFLSMEIGGLGKTAVTQLV 25 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v 25 (459)
.++++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999998
No 496
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.75 E-value=0.047 Score=48.47 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=27.8
Q ss_pred EEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcc
Q 040680 8 FLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIF 47 (459)
Q Consensus 8 v~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~ 47 (459)
|+|.|-||+||||+|..++. .....=..+.-|+.....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~ 40 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDS 40 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTS
T ss_pred EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCc
Confidence 66799999999999999987 444333456777765433
No 497
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.73 E-value=0.038 Score=45.02 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.5
Q ss_pred eeEEeecCCCCcHHHHHHHHhCC
Q 040680 6 RFFLSMEIGGLGKTAVTQLVYND 28 (459)
Q Consensus 6 ~vv~I~G~gGiGKTtLA~~v~~~ 28 (459)
+-|+++|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 498
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.71 E-value=0.2 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYN 27 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~ 27 (459)
+..++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999999886
No 499
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.68 E-value=0.067 Score=50.36 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=27.6
Q ss_pred ccCeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeC
Q 040680 3 VIERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCIS 44 (459)
Q Consensus 3 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~ 44 (459)
+..+++...|.||+||||+|..++. .....=..+.-++..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~--~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGV--YLAEKGLKVVIVSTD 63 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHH--HHHHSSCCEEEEECC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 4567788889999999999998887 333332345555543
No 500
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.67 E-value=0.14 Score=44.08 Aligned_cols=111 Identities=12% Similarity=-0.012 Sum_probs=54.1
Q ss_pred CeeEEeecCCCCcHHHHHHHHhCCcccccCCCeEEEEEeCCcccHHHHHHHHHHHhccccC--CccCHHHHHHHHHhhcC
Q 040680 5 ERFFLSMEIGGLGKTAVTQLVYNDETVKNHFDLRIWMCISDIFYHKAMLEKIIAFVAYREF--SKHDLNKLQEVHHQKID 82 (459)
Q Consensus 5 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 82 (459)
-++..++|.-|.||||.|...+. +...+-..++.+.... +.+.....+...++.... ...+.+ .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 46888999999999999998887 3333333333333221 112222234444432211 011111 2222333
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhhccCCCCcEEEEeecchhh
Q 040680 83 RKKYLLVLDDVWIENCDEWLKLETLLRNSAGGSNIIVATRSERV 126 (459)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~~ 126 (459)
++--++++|.+.--+.+..+.+....+ .|..||+|-++.+.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQDF 140 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBCT
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccccc
Confidence 333489999985433344444443322 37789999987654
Done!