Query 040681
Match_columns 594
No_of_seqs 374 out of 1974
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 8.6E-36 1.9E-40 312.9 26.4 350 157-584 110-487 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.9E-33 6.3E-38 273.2 20.3 310 157-542 72-390 (526)
3 KOG0166 Karyopherin (importin) 100.0 1.5E-30 3.2E-35 273.6 29.8 343 158-580 68-436 (514)
4 PLN03200 cellulose synthase-in 100.0 1E-29 2.3E-34 302.0 37.3 339 159-542 407-756 (2102)
5 PLN03200 cellulose synthase-in 100.0 2.7E-28 5.8E-33 290.0 38.1 354 158-583 364-767 (2102)
6 COG5064 SRP1 Karyopherin (impo 100.0 1.5E-28 3.3E-33 240.3 17.5 351 157-584 115-497 (526)
7 KOG4224 Armadillo repeat prote 99.9 1.3E-25 2.7E-30 221.6 24.8 298 161-540 131-436 (550)
8 KOG4224 Armadillo repeat prote 99.9 4.3E-23 9.3E-28 203.8 23.0 329 164-578 175-520 (550)
9 PF05804 KAP: Kinesin-associat 99.8 1.1E-17 2.3E-22 185.9 35.4 336 158-583 292-652 (708)
10 KOG1048 Neural adherens juncti 99.8 5.5E-18 1.2E-22 184.0 23.7 355 157-535 234-667 (717)
11 PF05804 KAP: Kinesin-associat 99.8 1.3E-16 2.9E-21 177.2 32.5 277 171-534 264-545 (708)
12 KOG4199 Uncharacterized conser 99.7 2E-15 4.4E-20 148.6 28.3 352 73-505 68-444 (461)
13 KOG1048 Neural adherens juncti 99.6 8.5E-14 1.8E-18 151.7 21.4 332 157-503 276-682 (717)
14 PF04826 Arm_2: Armadillo-like 99.5 1E-12 2.2E-17 130.5 21.0 200 194-470 8-207 (254)
15 KOG4199 Uncharacterized conser 99.5 2.7E-11 5.9E-16 119.8 30.1 380 101-578 21-442 (461)
16 PRK09687 putative lyase; Provi 99.5 1.2E-12 2.7E-17 132.6 21.5 247 158-542 25-274 (280)
17 KOG2122 Beta-catenin-binding p 99.4 1.8E-12 3.9E-17 146.5 16.4 260 175-505 317-601 (2195)
18 PRK09687 putative lyase; Provi 99.4 9.7E-12 2.1E-16 126.1 20.2 252 198-577 23-279 (280)
19 KOG4500 Rho/Rac GTPase guanine 99.4 6.1E-11 1.3E-15 120.7 24.9 300 162-539 93-420 (604)
20 PF04826 Arm_2: Armadillo-like 99.4 5.6E-11 1.2E-15 118.2 21.7 187 158-415 14-204 (254)
21 PF10508 Proteasom_PSMB: Prote 99.4 7.7E-10 1.7E-14 121.7 32.8 309 158-542 79-412 (503)
22 PRK13800 putative oxidoreducta 99.3 6E-10 1.3E-14 130.9 28.4 236 158-542 623-859 (897)
23 KOG2122 Beta-catenin-binding p 99.3 1.2E-10 2.7E-15 132.1 19.5 304 158-536 237-586 (2195)
24 PF10508 Proteasom_PSMB: Prote 99.3 5.5E-09 1.2E-13 115.0 31.7 299 161-542 43-358 (503)
25 cd00020 ARM Armadillo/beta-cat 99.3 1.1E-10 2.5E-15 102.3 14.7 101 193-294 2-103 (120)
26 cd00020 ARM Armadillo/beta-cat 99.3 1.1E-10 2.3E-15 102.5 14.0 111 158-269 9-120 (120)
27 PRK13800 putative oxidoreducta 99.2 4.5E-09 9.7E-14 123.6 25.1 237 158-542 654-891 (897)
28 KOG4500 Rho/Rac GTPase guanine 99.1 3.4E-09 7.3E-14 108.2 17.5 338 171-542 151-511 (604)
29 KOG1222 Kinesin associated pro 99.1 1.6E-08 3.4E-13 104.5 21.4 289 158-533 306-601 (791)
30 KOG2160 Armadillo/beta-catenin 98.9 7.7E-08 1.7E-12 97.5 20.0 187 166-415 93-281 (342)
31 cd00256 VATPase_H VATPase_H, r 98.9 6E-07 1.3E-11 95.2 24.4 278 161-505 106-425 (429)
32 KOG2160 Armadillo/beta-catenin 98.8 1.5E-06 3.2E-11 88.3 22.8 142 212-415 96-239 (342)
33 KOG0168 Putative ubiquitin fus 98.7 1.2E-06 2.7E-11 96.3 21.7 238 158-469 169-414 (1051)
34 PF01602 Adaptin_N: Adaptin N 98.7 4.4E-06 9.5E-11 93.0 26.4 100 161-272 47-146 (526)
35 KOG1222 Kinesin associated pro 98.7 7.6E-06 1.7E-10 85.1 24.1 274 173-534 280-559 (791)
36 KOG1293 Proteins containing ar 98.6 6.6E-06 1.4E-10 88.8 23.2 113 160-272 13-128 (678)
37 cd00256 VATPase_H VATPase_H, r 98.6 2.8E-05 6E-10 82.7 26.4 307 160-542 57-417 (429)
38 KOG3678 SARM protein (with ste 98.6 2.7E-06 5.9E-11 87.9 18.0 257 192-536 174-437 (832)
39 KOG4646 Uncharacterized conser 98.6 3.4E-07 7.4E-12 79.8 9.5 126 152-279 12-138 (173)
40 PF01602 Adaptin_N: Adaptin N 98.5 2E-05 4.4E-10 87.6 25.4 300 158-536 81-391 (526)
41 KOG1241 Karyopherin (importin) 98.5 4E-05 8.6E-10 84.0 24.3 309 151-535 358-693 (859)
42 KOG2759 Vacuolar H+-ATPase V1 98.5 2.6E-05 5.6E-10 80.4 21.7 277 161-505 119-438 (442)
43 KOG0946 ER-Golgi vesicle-tethe 98.4 0.00011 2.4E-09 80.8 26.1 284 156-519 22-356 (970)
44 TIGR02270 conserved hypothetic 98.4 6.2E-05 1.3E-09 80.3 22.5 226 161-505 59-296 (410)
45 PF00514 Arm: Armadillo/beta-c 98.4 4.8E-07 1E-11 63.6 4.3 41 187-228 1-41 (41)
46 PF03224 V-ATPase_H_N: V-ATPas 98.4 7.1E-06 1.5E-10 85.1 14.9 183 159-405 108-303 (312)
47 PF03224 V-ATPase_H_N: V-ATPas 98.4 1.4E-05 3E-10 82.9 16.6 196 160-415 62-268 (312)
48 PTZ00429 beta-adaptin; Provisi 98.3 0.0012 2.6E-08 75.6 33.2 123 157-294 69-191 (746)
49 KOG0168 Putative ubiquitin fus 98.3 4.1E-05 8.9E-10 84.7 20.0 252 201-532 170-436 (1051)
50 PTZ00429 beta-adaptin; Provisi 98.3 0.00067 1.4E-08 77.6 28.8 283 158-542 34-318 (746)
51 PF00514 Arm: Armadillo/beta-c 98.3 1.7E-06 3.8E-11 60.8 5.0 41 229-269 1-41 (41)
52 COG1413 FOG: HEAT repeat [Ener 98.2 0.00026 5.7E-09 74.1 22.3 227 157-503 44-271 (335)
53 KOG2171 Karyopherin (importin) 98.2 0.0015 3.3E-08 75.2 28.3 329 142-542 142-496 (1075)
54 KOG2023 Nuclear transport rece 98.1 0.00015 3.1E-09 78.6 18.2 321 151-542 169-497 (885)
55 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0018 3.8E-08 71.7 26.2 273 158-485 124-416 (970)
56 KOG1062 Vesicle coat complex A 98.1 0.0007 1.5E-08 75.0 22.6 283 144-503 130-449 (866)
57 TIGR02270 conserved hypothetic 97.9 0.00081 1.7E-08 71.9 19.8 154 197-467 53-206 (410)
58 PF05536 Neurochondrin: Neuroc 97.9 0.0012 2.6E-08 73.3 21.9 239 157-468 6-261 (543)
59 KOG1062 Vesicle coat complex A 97.9 0.001 2.3E-08 73.7 20.6 261 161-505 112-379 (866)
60 KOG1293 Proteins containing ar 97.9 0.0012 2.6E-08 71.8 19.6 244 213-528 391-649 (678)
61 KOG2973 Uncharacterized conser 97.9 0.0031 6.7E-08 63.0 20.6 276 158-535 5-297 (353)
62 COG5215 KAP95 Karyopherin (imp 97.8 0.0014 3E-08 70.0 18.6 310 151-535 360-693 (858)
63 COG1413 FOG: HEAT repeat [Ener 97.8 0.0019 4.1E-08 67.6 20.0 204 198-536 43-258 (335)
64 KOG4646 Uncharacterized conser 97.8 0.00038 8.3E-09 61.1 11.5 95 199-294 17-111 (173)
65 KOG2171 Karyopherin (importin) 97.8 0.002 4.4E-08 74.3 20.4 194 200-468 346-546 (1075)
66 PF13646 HEAT_2: HEAT repeats; 97.8 9E-05 2E-09 61.1 7.4 86 158-265 1-88 (88)
67 KOG1517 Guanine nucleotide bin 97.7 0.0012 2.6E-08 74.9 17.8 239 173-505 487-732 (1387)
68 PF13646 HEAT_2: HEAT repeats; 97.7 0.0001 2.2E-09 60.8 6.9 82 440-542 1-84 (88)
69 smart00185 ARM Armadillo/beta- 97.7 8.7E-05 1.9E-09 51.7 5.1 40 188-228 2-41 (41)
70 KOG2759 Vacuolar H+-ATPase V1 97.7 0.0027 5.8E-08 65.9 17.8 242 164-415 164-437 (442)
71 KOG1060 Vesicle coat complex A 97.7 0.021 4.6E-07 63.5 25.4 325 152-505 67-458 (968)
72 smart00185 ARM Armadillo/beta- 97.5 0.00019 4.1E-09 49.9 5.2 39 230-268 2-40 (41)
73 KOG1789 Endocytosis protein RM 97.5 0.037 8E-07 63.3 25.2 120 173-294 1742-1865(2235)
74 KOG4413 26S proteasome regulat 97.5 0.027 5.9E-07 56.7 21.3 281 161-515 87-386 (524)
75 KOG0567 HEAT repeat-containing 97.5 0.011 2.3E-07 58.0 17.8 228 169-504 49-279 (289)
76 KOG1059 Vesicle coat complex A 97.4 0.013 2.8E-07 64.5 19.0 221 200-508 146-368 (877)
77 PF14664 RICTOR_N: Rapamycin-i 97.4 0.036 7.9E-07 58.6 22.0 249 178-505 5-269 (371)
78 KOG1242 Protein containing ada 97.3 0.074 1.6E-06 58.1 24.0 288 158-534 136-465 (569)
79 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00041 8.8E-09 52.0 5.0 55 213-267 1-55 (55)
80 PF10165 Ric8: Guanine nucleot 97.3 0.042 9.1E-07 59.8 21.6 276 177-505 2-337 (446)
81 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00064 1.4E-08 50.9 4.9 51 453-503 1-55 (55)
82 KOG1059 Vesicle coat complex A 97.2 0.089 1.9E-06 58.3 22.7 229 144-467 132-364 (877)
83 KOG3678 SARM protein (with ste 97.2 0.062 1.3E-06 56.6 20.3 129 159-290 183-315 (832)
84 PF09759 Atx10homo_assoc: Spin 97.2 0.0023 5.1E-08 54.1 8.4 66 216-281 3-71 (102)
85 KOG1241 Karyopherin (importin) 97.1 0.23 5E-06 55.5 24.8 348 165-593 99-493 (859)
86 KOG1061 Vesicle coat complex A 97.0 0.013 2.8E-07 65.3 15.0 67 158-228 123-189 (734)
87 KOG2023 Nuclear transport rece 97.0 0.033 7.1E-07 61.0 17.5 260 198-539 128-452 (885)
88 COG5240 SEC21 Vesicle coat com 97.0 0.056 1.2E-06 58.2 18.8 88 178-273 249-336 (898)
89 PF09759 Atx10homo_assoc: Spin 97.0 0.004 8.7E-08 52.7 8.4 69 256-385 2-70 (102)
90 KOG1242 Protein containing ada 97.0 0.075 1.6E-06 58.1 19.8 260 156-504 216-482 (569)
91 KOG2259 Uncharacterized conser 96.9 0.013 2.9E-07 63.8 13.5 269 155-503 196-473 (823)
92 PF10165 Ric8: Guanine nucleot 96.9 0.12 2.7E-06 56.2 20.7 127 166-293 42-191 (446)
93 PF05536 Neurochondrin: Neuroc 96.9 0.16 3.5E-06 56.6 21.9 198 200-470 7-215 (543)
94 KOG0567 HEAT repeat-containing 96.9 0.15 3.3E-06 50.2 18.8 232 242-580 38-280 (289)
95 KOG1517 Guanine nucleotide bin 96.8 0.048 1E-06 62.5 17.0 138 217-414 485-627 (1387)
96 KOG0213 Splicing factor 3b, su 96.7 0.082 1.8E-06 58.6 17.5 251 160-505 803-1065(1172)
97 KOG1789 Endocytosis protein RM 96.7 1.5 3.2E-05 51.0 27.1 332 167-534 1783-2142(2235)
98 PF12348 CLASP_N: CLASP N term 96.4 0.046 1E-06 53.7 12.4 104 166-271 17-125 (228)
99 KOG1824 TATA-binding protein-i 96.4 0.18 4E-06 57.4 17.8 268 160-505 9-286 (1233)
100 KOG0213 Splicing factor 3b, su 96.4 0.13 2.8E-06 57.1 16.2 168 386-584 882-1069(1172)
101 PF06025 DUF913: Domain of Unk 96.3 0.47 1E-05 50.4 20.1 131 233-427 98-240 (379)
102 KOG4413 26S proteasome regulat 96.2 1.7 3.6E-05 44.3 23.5 293 162-529 134-459 (524)
103 KOG1824 TATA-binding protein-i 96.2 0.17 3.7E-06 57.7 16.4 69 439-508 818-888 (1233)
104 COG5369 Uncharacterized conser 96.2 0.037 7.9E-07 59.2 10.6 119 175-294 408-528 (743)
105 PF14664 RICTOR_N: Rapamycin-i 96.1 0.95 2.1E-05 48.0 21.2 126 164-294 33-159 (371)
106 COG5181 HSH155 U2 snRNP splice 95.9 0.16 3.4E-06 55.4 14.0 254 157-505 605-870 (975)
107 COG5215 KAP95 Karyopherin (imp 95.9 3.4 7.4E-05 45.2 23.4 289 164-532 102-418 (858)
108 COG5369 Uncharacterized conser 95.6 0.13 2.9E-06 55.2 11.8 132 365-505 451-594 (743)
109 KOG2734 Uncharacterized conser 95.5 2.2 4.8E-05 45.1 20.2 114 176-291 104-233 (536)
110 KOG1077 Vesicle coat complex A 95.5 5.4 0.00012 44.7 25.3 327 157-540 75-423 (938)
111 KOG1061 Vesicle coat complex A 95.5 0.15 3.2E-06 57.2 12.4 126 154-294 47-172 (734)
112 KOG2734 Uncharacterized conser 95.5 4.1 8.8E-05 43.2 23.1 255 157-470 126-402 (536)
113 COG5096 Vesicle coat complex, 95.5 0.34 7.3E-06 55.2 15.3 147 365-542 40-187 (757)
114 COG5231 VMA13 Vacuolar H+-ATPa 95.4 1.8 4E-05 43.9 18.5 232 206-505 157-428 (432)
115 PF05004 IFRD: Interferon-rela 95.4 1 2.2E-05 46.6 17.6 109 158-269 45-160 (309)
116 KOG1060 Vesicle coat complex A 95.2 3.9 8.4E-05 46.3 21.8 265 160-538 39-338 (968)
117 KOG4535 HEAT and armadillo rep 95.0 0.068 1.5E-06 56.5 7.3 101 358-467 497-602 (728)
118 KOG1058 Vesicle coat complex C 95.0 0.46 1E-05 53.1 13.9 89 362-469 376-464 (948)
119 PF12348 CLASP_N: CLASP N term 95.0 0.7 1.5E-05 45.2 14.4 169 362-542 24-198 (228)
120 PF12755 Vac14_Fab1_bd: Vacuol 94.9 0.13 2.9E-06 43.4 7.6 90 173-267 3-94 (97)
121 PF08045 CDC14: Cell division 94.6 0.36 7.8E-06 48.1 11.0 98 172-269 107-207 (257)
122 COG5096 Vesicle coat complex, 94.6 9.1 0.0002 44.0 23.3 129 151-294 50-178 (757)
123 COG5181 HSH155 U2 snRNP splice 94.5 1.2 2.5E-05 49.0 15.3 86 386-486 687-772 (975)
124 KOG0212 Uncharacterized conser 94.5 2.5 5.4E-05 46.1 17.5 227 161-468 213-444 (675)
125 PF11841 DUF3361: Domain of un 94.3 1.6 3.4E-05 40.2 13.7 126 381-519 5-142 (160)
126 PF06025 DUF913: Domain of Unk 94.3 4.1 8.9E-05 43.3 19.1 112 169-280 122-243 (379)
127 KOG2973 Uncharacterized conser 94.3 1.3 2.9E-05 44.7 14.1 89 201-294 6-94 (353)
128 KOG1078 Vesicle coat complex C 94.3 1 2.2E-05 50.8 14.5 70 198-272 241-314 (865)
129 KOG3036 Protein involved in ce 94.2 1.9 4.2E-05 42.2 14.6 158 255-473 94-252 (293)
130 PF05659 RPW8: Arabidopsis bro 94.1 0.23 4.9E-06 45.3 7.8 93 19-119 17-109 (147)
131 KOG1077 Vesicle coat complex A 94.0 3.6 7.8E-05 46.0 17.9 140 387-541 329-479 (938)
132 KOG2259 Uncharacterized conser 94.0 1.9 4E-05 47.8 15.7 53 453-505 387-439 (823)
133 PF11841 DUF3361: Domain of un 94.0 1.5 3.2E-05 40.4 12.8 104 191-294 4-114 (160)
134 PF12717 Cnd1: non-SMC mitotic 93.9 0.48 1E-05 44.7 10.1 91 400-505 1-92 (178)
135 PF11698 V-ATPase_H_C: V-ATPas 93.9 0.22 4.8E-06 43.4 6.9 75 152-227 39-114 (119)
136 PF02985 HEAT: HEAT repeat; I 93.8 0.11 2.4E-06 33.7 3.9 28 242-269 2-29 (31)
137 PF05004 IFRD: Interferon-rela 93.8 5.1 0.00011 41.4 18.2 109 387-503 129-255 (309)
138 KOG4535 HEAT and armadillo rep 93.8 0.26 5.6E-06 52.3 8.5 169 361-540 407-593 (728)
139 PF02985 HEAT: HEAT repeat; I 93.8 0.091 2E-06 34.1 3.4 29 477-505 1-29 (31)
140 PF08569 Mo25: Mo25-like; Int 93.6 4.9 0.00011 42.0 17.7 204 235-505 71-283 (335)
141 PF06371 Drf_GBD: Diaphanous G 93.5 0.73 1.6E-05 43.6 10.7 107 160-268 70-186 (187)
142 KOG0212 Uncharacterized conser 93.4 8.9 0.00019 42.0 19.2 265 158-503 169-442 (675)
143 KOG1058 Vesicle coat complex C 93.4 1.5 3.2E-05 49.3 13.8 127 362-508 223-349 (948)
144 PF14668 RICTOR_V: Rapamycin-i 93.3 0.45 9.7E-06 37.8 7.2 66 216-282 4-70 (73)
145 PF12717 Cnd1: non-SMC mitotic 93.3 0.54 1.2E-05 44.4 9.3 112 169-294 1-113 (178)
146 KOG0414 Chromosome condensatio 92.9 0.75 1.6E-05 54.0 11.1 128 388-538 920-1052(1251)
147 KOG0211 Protein phosphatase 2A 92.9 23 0.00049 41.1 25.4 111 152-269 232-345 (759)
148 PF11698 V-ATPase_H_C: V-ATPas 92.9 0.27 5.9E-06 42.9 5.9 72 199-270 44-116 (119)
149 COG5231 VMA13 Vacuolar H+-ATPa 92.8 6.1 0.00013 40.3 15.9 247 157-414 149-426 (432)
150 PF08569 Mo25: Mo25-like; Int 92.8 13 0.00028 38.9 19.3 204 158-426 78-293 (335)
151 PF12719 Cnd3: Nuclear condens 92.7 3.3 7.1E-05 42.6 14.8 109 157-271 27-145 (298)
152 PF13764 E3_UbLigase_R4: E3 ub 92.6 25 0.00055 41.0 24.1 76 194-269 113-200 (802)
153 KOG1240 Protein kinase contain 92.5 17 0.00037 43.4 21.1 269 169-505 436-725 (1431)
154 PF08045 CDC14: Cell division 92.5 0.93 2E-05 45.2 9.9 83 213-295 105-189 (257)
155 KOG1943 Beta-tubulin folding c 92.4 6.5 0.00014 46.1 17.4 243 198-504 341-610 (1133)
156 KOG4151 Myosin assembly protei 92.1 1.7 3.6E-05 49.2 12.2 186 161-415 509-698 (748)
157 KOG4151 Myosin assembly protei 92.0 1.5 3.3E-05 49.5 11.8 199 229-505 493-699 (748)
158 KOG0915 Uncharacterized conser 91.9 22 0.00048 43.5 21.5 91 140-231 976-1071(1702)
159 PF12755 Vac14_Fab1_bd: Vacuol 91.9 0.63 1.4E-05 39.3 6.8 59 476-541 27-88 (97)
160 PF04063 DUF383: Domain of unk 91.8 1.2 2.6E-05 42.6 9.4 95 198-292 52-157 (192)
161 PF04078 Rcd1: Cell differenti 91.4 17 0.00036 36.3 19.8 197 213-474 9-224 (262)
162 KOG1967 DNA repair/transcripti 91.0 3.8 8.2E-05 47.2 13.5 107 387-503 909-1022(1030)
163 KOG1240 Protein kinase contain 90.8 15 0.00032 43.9 18.2 272 200-542 424-717 (1431)
164 KOG4653 Uncharacterized conser 90.3 11 0.00024 43.2 16.3 182 207-468 736-918 (982)
165 KOG2062 26S proteasome regulat 90.1 6.2 0.00013 44.5 13.9 99 387-505 519-618 (929)
166 KOG2062 26S proteasome regulat 89.9 18 0.00039 41.0 17.2 107 360-492 570-681 (929)
167 PF11701 UNC45-central: Myosin 89.9 9.3 0.0002 35.2 13.3 93 362-465 60-156 (157)
168 KOG3036 Protein involved in ce 89.9 22 0.00047 35.2 16.5 99 172-271 95-199 (293)
169 PF01347 Vitellogenin_N: Lipop 89.8 14 0.00031 42.0 17.6 100 362-494 507-611 (618)
170 KOG2032 Uncharacterized conser 88.8 39 0.00084 36.7 19.0 106 161-269 263-371 (533)
171 KOG2999 Regulator of Rac1, req 88.4 10 0.00022 41.5 13.6 153 200-415 85-241 (713)
172 KOG2611 Neurochondrin/leucine- 88.2 42 0.00092 36.3 20.4 128 161-291 16-161 (698)
173 PF14668 RICTOR_V: Rapamycin-i 87.9 2.7 5.8E-05 33.4 7.0 67 173-240 4-70 (73)
174 KOG0414 Chromosome condensatio 87.6 3.9 8.4E-05 48.4 10.8 128 352-503 934-1062(1251)
175 smart00638 LPD_N Lipoprotein N 87.6 37 0.0008 38.3 18.9 98 363-493 464-566 (574)
176 PF04063 DUF383: Domain of unk 87.6 5.1 0.00011 38.3 10.1 127 401-536 9-161 (192)
177 KOG0211 Protein phosphatase 2A 87.4 62 0.0013 37.7 20.2 281 172-542 371-656 (759)
178 KOG2999 Regulator of Rac1, req 87.3 4.7 0.0001 43.9 10.4 137 157-294 84-225 (713)
179 KOG1943 Beta-tubulin folding c 86.7 77 0.0017 37.7 20.4 223 239-551 340-611 (1133)
180 KOG1078 Vesicle coat complex C 86.3 61 0.0013 37.2 18.6 68 439-508 355-423 (865)
181 PF05918 API5: Apoptosis inhib 85.9 5 0.00011 44.5 10.2 119 360-501 37-158 (556)
182 COG5240 SEC21 Vesicle coat com 84.1 74 0.0016 35.3 18.4 123 361-505 319-442 (898)
183 PF11701 UNC45-central: Myosin 83.9 3 6.5E-05 38.5 6.4 107 158-266 44-156 (157)
184 PF05918 API5: Apoptosis inhib 83.9 4.1 8.8E-05 45.2 8.4 90 399-503 34-123 (556)
185 PF08167 RIX1: rRNA processing 83.1 11 0.00023 35.1 9.8 115 154-272 23-146 (165)
186 KOG2956 CLIP-associating prote 82.4 62 0.0014 35.0 15.9 115 157-272 287-404 (516)
187 PF13764 E3_UbLigase_R4: E3 ub 82.3 1.1E+02 0.0024 35.9 21.8 103 175-278 141-267 (802)
188 COG5116 RPN2 26S proteasome re 80.4 3.9 8.4E-05 44.7 6.3 89 438-542 551-642 (926)
189 PF07814 WAPL: Wings apart-lik 80.1 85 0.0018 33.2 19.8 92 158-250 23-116 (361)
190 PF12031 DUF3518: Domain of un 79.7 4.1 8.9E-05 40.0 5.8 81 214-294 139-228 (257)
191 PF12719 Cnd3: Nuclear condens 79.7 77 0.0017 32.4 16.2 159 360-532 42-207 (298)
192 PF08167 RIX1: rRNA processing 78.7 20 0.00043 33.3 10.0 106 388-505 26-143 (165)
193 PF12031 DUF3518: Domain of un 77.7 6.3 0.00014 38.7 6.4 81 171-252 139-228 (257)
194 KOG3665 ZYG-1-like serine/thre 77.5 38 0.00081 39.2 13.7 151 368-532 494-677 (699)
195 COG5209 RCD1 Uncharacterized p 76.2 23 0.0005 34.5 9.5 104 362-470 163-270 (315)
196 KOG0413 Uncharacterized conser 75.8 18 0.00038 42.2 10.0 115 403-541 947-1064(1529)
197 KOG2611 Neurochondrin/leucine- 74.9 81 0.0018 34.3 13.9 134 203-397 16-162 (698)
198 PF04078 Rcd1: Cell differenti 74.8 10 0.00022 37.8 7.1 100 171-271 65-170 (262)
199 COG5098 Chromosome condensatio 74.7 13 0.00029 41.7 8.5 106 388-508 934-1040(1128)
200 PF12460 MMS19_C: RNAPII trans 74.6 28 0.00062 37.5 11.3 112 158-272 273-397 (415)
201 KOG1991 Nuclear transport rece 73.5 2E+02 0.0043 34.1 20.9 115 169-289 431-550 (1010)
202 KOG1248 Uncharacterized conser 72.7 2.3E+02 0.0049 34.4 19.5 110 388-505 782-898 (1176)
203 PF12530 DUF3730: Protein of u 72.5 1E+02 0.0022 30.3 19.0 147 200-415 2-150 (234)
204 KOG1991 Nuclear transport rece 72.0 2.2E+02 0.0047 33.9 18.0 74 198-271 410-493 (1010)
205 PF06371 Drf_GBD: Diaphanous G 71.7 31 0.00067 32.3 9.6 55 361-415 132-186 (187)
206 smart00638 LPD_N Lipoprotein N 69.8 2E+02 0.0042 32.4 18.0 131 388-542 394-537 (574)
207 KOG2025 Chromosome condensatio 69.6 21 0.00045 40.4 8.6 102 387-499 85-187 (892)
208 KOG2274 Predicted importin 9 [ 67.6 2E+02 0.0043 33.9 15.8 119 170-294 505-625 (1005)
209 COG5098 Chromosome condensatio 67.4 41 0.00089 38.1 10.2 115 399-536 908-1022(1128)
210 KOG0915 Uncharacterized conser 66.9 3.4E+02 0.0073 34.1 20.1 107 386-503 1234-1342(1702)
211 PF14225 MOR2-PAG1_C: Cell mor 66.3 1.5E+02 0.0033 29.8 19.8 208 157-449 8-239 (262)
212 PF14726 RTTN_N: Rotatin, an a 65.4 43 0.00094 28.2 7.9 94 171-265 2-96 (98)
213 KOG3665 ZYG-1-like serine/thre 65.3 58 0.0013 37.7 11.6 94 179-272 494-590 (699)
214 cd03569 VHS_Hrs_Vps27p VHS dom 65.3 30 0.00064 31.3 7.5 73 156-228 41-114 (142)
215 PF13251 DUF4042: Domain of un 65.3 94 0.002 29.4 11.1 67 439-505 102-174 (182)
216 PF11865 DUF3385: Domain of un 64.8 37 0.00081 31.3 8.3 36 200-235 12-47 (160)
217 KOG1832 HIV-1 Vpr-binding prot 62.8 3.2E+02 0.0069 32.3 20.1 123 167-294 364-492 (1516)
218 PF10363 DUF2435: Protein of u 62.4 22 0.00047 29.6 5.6 82 202-293 7-88 (92)
219 cd03568 VHS_STAM VHS domain fa 60.9 33 0.00071 31.1 7.0 69 200-269 39-110 (144)
220 PF12460 MMS19_C: RNAPII trans 60.9 2.4E+02 0.0052 30.3 19.2 75 388-472 324-398 (415)
221 COG5116 RPN2 26S proteasome re 60.3 24 0.00053 38.8 6.8 89 165-268 561-649 (926)
222 KOG2025 Chromosome condensatio 59.6 39 0.00085 38.3 8.4 94 439-542 86-185 (892)
223 smart00567 EZ_HEAT E-Z type HE 59.5 8.2 0.00018 24.4 2.1 27 491-532 2-28 (30)
224 KOG2032 Uncharacterized conser 58.9 95 0.002 33.9 10.8 140 352-505 267-415 (533)
225 PRK14707 hypothetical protein; 58.9 5.4E+02 0.012 33.7 23.6 287 167-536 301-598 (2710)
226 cd03561 VHS VHS domain family; 58.8 60 0.0013 28.9 8.3 72 157-228 38-112 (133)
227 smart00288 VHS Domain present 58.4 48 0.001 29.5 7.6 73 156-228 37-111 (133)
228 KOG1243 Protein kinase [Genera 56.1 2.3E+02 0.0049 32.4 13.5 252 161-504 259-514 (690)
229 KOG1020 Sister chromatid cohes 55.9 93 0.002 38.5 11.1 107 388-508 817-923 (1692)
230 PF03130 HEAT_PBS: PBS lyase H 55.8 6.5 0.00014 24.5 1.1 26 455-486 1-26 (27)
231 KOG2933 Uncharacterized conser 54.3 1E+02 0.0022 31.6 9.7 67 438-505 88-158 (334)
232 cd03569 VHS_Hrs_Vps27p VHS dom 54.2 48 0.001 30.0 6.9 70 199-269 42-114 (142)
233 KOG1820 Microtubule-associated 54.1 2E+02 0.0043 33.9 13.3 123 161-295 258-384 (815)
234 KOG1248 Uncharacterized conser 53.6 4.9E+02 0.011 31.7 19.6 99 166-268 664-766 (1176)
235 COG5218 YCG1 Chromosome conden 52.8 74 0.0016 35.4 8.9 105 387-505 91-196 (885)
236 KOG2274 Predicted importin 9 [ 52.7 4.6E+02 0.0099 31.1 18.5 132 362-505 547-689 (1005)
237 cd03567 VHS_GGA VHS domain fam 52.6 56 0.0012 29.5 7.0 70 199-269 39-116 (139)
238 cd03568 VHS_STAM VHS domain fa 52.6 70 0.0015 29.0 7.7 73 156-228 37-110 (144)
239 PF14225 MOR2-PAG1_C: Cell mor 51.5 2.7E+02 0.0058 28.0 18.0 129 383-534 107-240 (262)
240 cd03561 VHS VHS domain family; 50.5 74 0.0016 28.3 7.5 70 199-269 38-112 (133)
241 smart00288 VHS Domain present 50.0 62 0.0013 28.8 6.9 69 200-269 39-111 (133)
242 PF10363 DUF2435: Protein of u 49.9 75 0.0016 26.4 6.8 64 441-505 6-72 (92)
243 KOG4464 Signaling protein RIC- 49.7 1.1E+02 0.0024 32.6 9.3 92 203-294 50-151 (532)
244 PF12830 Nipped-B_C: Sister ch 49.5 65 0.0014 30.5 7.4 67 438-505 8-74 (187)
245 COG5218 YCG1 Chromosome conden 48.4 1E+02 0.0022 34.3 9.2 93 439-542 92-191 (885)
246 cd03567 VHS_GGA VHS domain fam 47.8 89 0.0019 28.2 7.5 72 157-228 39-116 (139)
247 PF00790 VHS: VHS domain; Int 47.7 60 0.0013 29.1 6.5 72 157-228 43-118 (140)
248 PF01365 RYDR_ITPR: RIH domain 46.9 60 0.0013 31.2 6.8 78 360-449 76-153 (207)
249 PF07814 WAPL: Wings apart-lik 46.8 92 0.002 32.9 8.7 93 200-292 23-116 (361)
250 KOG4653 Uncharacterized conser 45.2 5.4E+02 0.012 30.4 14.4 159 361-542 743-910 (982)
251 PF08324 PUL: PUL domain; Int 45.1 2.6E+02 0.0055 27.9 11.4 100 362-470 127-233 (268)
252 cd07670 BAR_SNX18 The Bin/Amph 44.5 1.4E+02 0.003 28.7 8.4 73 5-90 23-95 (207)
253 COG5209 RCD1 Uncharacterized p 44.0 46 0.001 32.4 5.2 98 173-271 117-220 (315)
254 PF08216 CTNNBL: Catenin-beta- 43.2 31 0.00068 29.6 3.6 43 216-258 63-105 (108)
255 PF01347 Vitellogenin_N: Lipop 42.6 78 0.0017 36.0 7.9 85 164-266 498-586 (618)
256 PF11791 Aconitase_B_N: Aconit 41.5 57 0.0012 29.7 5.1 44 216-269 80-123 (154)
257 PF06685 DUF1186: Protein of u 41.5 2E+02 0.0043 28.7 9.5 80 196-280 71-153 (249)
258 KOG1788 Uncharacterized conser 41.1 6.4E+02 0.014 30.7 14.2 122 164-294 475-601 (2799)
259 KOG2137 Protein kinase [Signal 40.7 1.5E+02 0.0033 33.8 9.4 135 384-535 386-521 (700)
260 PF12726 SEN1_N: SEN1 N termin 40.5 1.6E+02 0.0035 34.3 10.2 113 154-269 438-553 (727)
261 PF11707 Npa1: Ribosome 60S bi 39.9 4.5E+02 0.0098 27.3 13.0 151 380-534 50-216 (330)
262 PF12530 DUF3730: Protein of u 39.1 3.8E+02 0.0083 26.3 13.6 125 361-505 17-151 (234)
263 KOG1020 Sister chromatid cohes 38.1 7E+02 0.015 31.5 14.6 34 240-273 816-849 (1692)
264 PF00790 VHS: VHS domain; Int 37.9 2.8E+02 0.006 24.7 9.3 90 388-485 43-136 (140)
265 PF06012 DUF908: Domain of Unk 37.0 1.3E+02 0.0028 31.4 7.9 67 214-280 237-308 (329)
266 KOG2676 Uncharacterized conser 36.9 45 0.00097 34.7 4.1 62 219-280 376-440 (478)
267 KOG0413 Uncharacterized conser 35.8 46 0.00099 39.1 4.4 81 453-542 945-1027(1529)
268 KOG1967 DNA repair/transcripti 35.6 79 0.0017 37.0 6.2 105 158-263 911-1018(1030)
269 PF01365 RYDR_ITPR: RIH domain 34.4 92 0.002 29.9 5.9 115 233-415 36-168 (207)
270 KOG1243 Protein kinase [Genera 33.8 2.2E+02 0.0047 32.5 9.1 72 195-270 327-399 (690)
271 PF08324 PUL: PUL domain; Int 33.1 4.5E+02 0.0098 26.0 11.0 99 171-270 78-187 (268)
272 PF07923 N1221: N1221-like pro 32.1 75 0.0016 32.5 5.1 58 474-532 58-126 (293)
273 PF07923 N1221: N1221-like pro 32.1 85 0.0019 32.1 5.5 55 155-209 59-127 (293)
274 PF08216 CTNNBL: Catenin-beta- 31.8 46 0.001 28.6 2.8 41 174-216 64-104 (108)
275 KOG2933 Uncharacterized conser 31.7 3.8E+02 0.0083 27.6 9.7 106 389-505 90-199 (334)
276 cd07668 BAR_SNX9 The Bin/Amphi 30.9 2.9E+02 0.0064 26.7 8.3 73 5-90 23-95 (210)
277 KOG1832 HIV-1 Vpr-binding prot 30.1 1.6E+02 0.0035 34.6 7.4 102 169-280 675-783 (1516)
278 cd07669 BAR_SNX33 The Bin/Amph 29.4 3.3E+02 0.0072 26.3 8.4 72 5-89 23-94 (207)
279 COG5656 SXM1 Importin, protein 29.0 9.8E+02 0.021 27.9 13.8 114 384-505 405-528 (970)
280 PF12397 U3snoRNP10: U3 small 28.4 3.2E+02 0.0069 23.5 7.9 68 388-470 7-76 (121)
281 PF14663 RasGEF_N_2: Rapamycin 28.2 1.3E+02 0.0029 25.9 5.3 40 240-280 8-47 (115)
282 KOG4231 Intracellular membrane 28.2 99 0.0021 33.8 5.1 60 210-269 339-399 (763)
283 PF08606 Prp19: Prp19/Pso4-lik 27.8 2.9E+02 0.0064 21.7 6.3 46 32-86 11-64 (70)
284 PF14663 RasGEF_N_2: Rapamycin 27.5 1.2E+02 0.0027 26.2 4.9 39 199-238 9-47 (115)
285 PF04499 SAPS: SIT4 phosphatas 26.6 4.5E+02 0.0097 29.0 10.1 85 377-468 52-148 (475)
286 PF04388 Hamartin: Hamartin pr 25.3 4E+02 0.0087 30.8 9.9 56 213-268 82-139 (668)
287 cd07626 BAR_SNX9_like The Bin/ 23.5 5.5E+02 0.012 24.7 8.9 73 5-90 15-87 (199)
288 PF11865 DUF3385: Domain of un 23.3 1E+02 0.0022 28.4 3.8 32 437-468 9-40 (160)
289 KOG2137 Protein kinase [Signal 22.2 4.9E+02 0.011 29.9 9.4 123 164-294 397-520 (700)
290 KOG4464 Signaling protein RIC- 22.1 5.1E+02 0.011 27.8 8.8 90 439-532 46-149 (532)
291 PF11791 Aconitase_B_N: Aconit 22.1 69 0.0015 29.2 2.3 43 457-505 81-123 (154)
292 cd03565 VHS_Tom1 VHS domain fa 21.6 4.6E+02 0.01 23.5 7.6 68 202-269 42-115 (141)
293 KOG2956 CLIP-associating prote 21.5 1.1E+03 0.024 25.9 16.1 53 453-505 420-477 (516)
294 PF06685 DUF1186: Protein of u 20.9 8.4E+02 0.018 24.3 10.9 83 441-526 114-201 (249)
295 cd03572 ENTH_epsin_related ENT 20.9 5.8E+02 0.013 22.4 8.5 51 369-426 25-75 (122)
296 cd03572 ENTH_epsin_related ENT 20.6 5.9E+02 0.013 22.4 8.4 69 200-269 40-119 (122)
297 PF12830 Nipped-B_C: Sister ch 20.5 7.1E+02 0.015 23.3 11.4 126 157-294 9-142 (187)
298 PF10274 ParcG: Parkin co-regu 20.5 7.4E+02 0.016 23.5 10.2 71 157-228 39-109 (183)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-36 Score=312.88 Aligned_cols=350 Identities=20% Similarity=0.247 Sum_probs=292.2
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.|..+|..|. ..++..+.+|+|+|.+++.++.+..+.+++.|+||.|++||.+++ .+++++|+|||+|+++| +..|.
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHHHH
Confidence 4667888886 556999999999999999999999999999999999999999999 99999999999999995 55799
Q ss_pred HHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcC-HHhH-HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIM-KVQIQVASLVARMAEHD-ALAQ-DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~-~v~~~aa~aL~~La~~~-~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
.+++.|++++|+.++...+. ....+++|+|+|||.+. |... +.+. .+++.|+.++.+. |
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~--~iLp~L~~ll~~~----D------------ 250 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA--PILPALLRLLHST----D------------ 250 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH--HHHHHHHHHHhcC----C------------
Confidence 99999999999999988754 78899999999999874 3222 3333 3788888888665 1
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
.++...|++||.+|+.+.++..+.+++.|+++.
T Consensus 251 -----------------------------------------------~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 251 -----------------------------------------------EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR 283 (514)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence 134678999999999888888999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|+.+|.+.+..++..|+.++.||+ .++....+. +.++| +++.|..++.++....++..|+++|.|++....
T Consensus 284 LV~lL~~~~~~v~~PaLRaiGNIv---tG~d~QTq~--vi~~~----~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 284 LVDLLGHSSPKVVTPALRAIGNIV---TGSDEQTQV--VINSG----ALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HHHHHcCCCcccccHHHhhcccee---eccHHHHHH--HHhcC----hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 999999999999999999999987 555544452 34444 889999999877767799999999999997333
Q ss_pred h-----hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHh---HH
Q 040681 472 A-----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH---GL 542 (594)
Q Consensus 472 ~-----~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~---Al 542 (594)
. ...+++|.|+++|..+++++++||+|||+|++++++ +++.+++++.|+|+||+.+|...|. +... |+
T Consensus 355 ~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l 431 (514)
T KOG0166|consen 355 EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGL 431 (514)
T ss_pred HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHH
Confidence 1 123899999999999999999999999999999887 5999999999999999999987776 4333 33
Q ss_pred ----HHHH-------HHHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 ----ALEQ-------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 ----~l~~-------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
..++ ..+-..+| +.+..+.+|.|+.+++|.+|+.+|+.||+.
T Consensus 432 ~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 432 ENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 1111 22223344 777888999999999999999999999994
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.9e-33 Score=273.18 Aligned_cols=310 Identities=21% Similarity=0.305 Sum_probs=254.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~ 234 (594)
..+++.+.|.++|.+.+.+|....+.+.. ++..--..+++.|.||.+++++++......+-+|+|+|.|++.... .-+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 45778889999999999999999887654 3334447888999999999999776547788899999999998544 456
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.++++|++|.++++|.+++.+|++++.|+|+|++..++.||+.+.++|++.+++.+|.+.. +|
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~-------------~~---- 214 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA-------------IH---- 214 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc-------------ch----
Confidence 6679999999999999999999999999999999999999999999999999999997541 00
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
..+.+++.+.|.|||+|...--..-.-..++|.|.+
T Consensus 215 --------------------------------------------ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 215 --------------------------------------------ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred --------------------------------------------HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 135778999999999987322222223447999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
|+.+.++++...|+|+|++|+.++. +.-++ +.+.| ....|+.+|.+. +..++.||++.+||+.. +...+
T Consensus 251 Liys~D~evlvDA~WAiSYlsDg~~---E~i~a--vld~g----~~~RLvElLs~~-sa~iqtPalR~vGNIVT-G~D~Q 319 (526)
T COG5064 251 LIYSRDPEVLVDACWAISYLSDGPN---EKIQA--VLDVG----IPGRLVELLSHE-SAKIQTPALRSVGNIVT-GSDDQ 319 (526)
T ss_pred HHhhcCHHHHHHHHHHHHHhccCcH---HHHHH--HHhcC----CcHHHHHHhcCc-cccccCHHHHhhcCeee-cCccc
Confidence 9999999999999999999985542 22232 23343 455688888754 48999999999999984 44344
Q ss_pred h------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 475 T------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 475 ~------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+ |+++.+-.+|.+....+++||||.|+|+++ +| .++.+++++.+.||+|+++|.+.+. .+++|+
T Consensus 320 TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-Gn---teqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-GN---TEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred eehheecccHHHHHHHhcChhhhhhhhhheeeccccc-CC---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 3 889999999999989999999999999998 66 5999999999999999999999888 888877
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.5e-30 Score=273.55 Aligned_cols=343 Identities=20% Similarity=0.273 Sum_probs=273.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
....++.+.++++..+..|..+++.+.. +.......++..|.||.||.+|+..+++.+|.+|+|+|.|++. ..+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4456788899999999999999887654 2223345555669999999999877669999999999999998 6667788
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
++++|++|.|+++|.+++.+|++.|+|+|+|++.+++.+|+.+.++|++.+|+.++.....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~------------------- 208 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK------------------- 208 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-------------------
Confidence 8899999999999999999999999999999999999999999999999999999876621
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..+.+++.++|.|||++...--..-.-..++|.|..+
T Consensus 209 -------------------------------------------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l 245 (514)
T KOG0166|consen 209 -------------------------------------------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL 245 (514)
T ss_pred -------------------------------------------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence 1247789999999998873222233345589999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~ 475 (594)
+.+.|+++...|+|+|++|+++. |+.++- +.++ ++++.|+.+|.... ..++.||++++||++ ++...++
T Consensus 246 l~~~D~~Vl~Da~WAlsyLsdg~--ne~iq~---vi~~----gvv~~LV~lL~~~~-~~v~~PaLRaiGNIv-tG~d~QT 314 (514)
T KOG0166|consen 246 LHSTDEEVLTDACWALSYLTDGS--NEKIQM---VIDA----GVVPRLVDLLGHSS-PKVVTPALRAIGNIV-TGSDEQT 314 (514)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCC--hHHHHH---HHHc----cchHHHHHHHcCCC-cccccHHHhhcccee-eccHHHH
Confidence 99999999999999999998443 333333 2233 38899999998655 889999999999988 4444444
Q ss_pred ------ccHHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH-----
Q 040681 476 ------RVIGPLVAHLS-HRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL----- 542 (594)
Q Consensus 476 ------~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al----- 542 (594)
|++|.|..+|. +....+++||||+|+|++. || +++.++++++|.+|.|+.+|..++. +|++|.
T Consensus 315 q~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~---~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GN---QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CC---HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 88999999997 5666699999999999999 77 5999999999999999999999998 999877
Q ss_pred -----------HHHHHHHHHHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 543 -----------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 543 -----------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
-|.+.+++.-|... ...+|+.+.....++++-|..
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdl---L~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDL---LTCPDVKIILVALDGLENILK 436 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhc---ccCCChHHHHHHHHHHHHHHH
Confidence 12223333333221 134577777777777776644
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.98 E-value=1e-29 Score=301.97 Aligned_cols=339 Identities=17% Similarity=0.181 Sum_probs=271.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 040681 159 WSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIV 237 (594)
Q Consensus 159 ~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv 237 (594)
..+|.+|..++.+.+.+++++|.+++.+++++++.|++.|+||+|+++|++++ ..+|+.|+++|+||+. +++++..|+
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34777888889999999999999999999999999999999999999999998 9999999999999997 677899999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
++|+||+|+++|.+++.++++.|+|+|+|||.+++.++..+.++|++++|+++|.+++.+. .+...+ .+.|+
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~------q~~Aa~--AL~nL 557 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG------QEIAAK--TLTKL 557 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH------HHHHHH--HHHHH
Confidence 9999999999999999999999999999999988788888889999999999998874211 011122 22333
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc---CChhhHHHHHhhCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR---GSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~---~~~~~~~~i~e~g~l~~L~~ 394 (594)
.... +...+++++..+ ..+++ .++..+.++|.++.. +++...+.....|+++.|++
T Consensus 558 i~~~----d~~~I~~Lv~LL-------------lsdd~----~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 558 VRTA----DAATISQLTALL-------------LGDLP----ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred Hhcc----chhHHHHHHHHh-------------cCCCh----hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 2211 112223333222 12333 235566777777643 22222333346799999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
||+++++.+++.|+|+|.|++ .++++++.. +.. .+++++|+.+|.+++ .+++..++++|+||++.....+
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~---a~~~d~~~a-vv~-----agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIF---SSRQDLCES-LAT-----DEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHh---cCChHHHHH-HHH-----cCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999998 567777774 342 348999999998776 8899999999999997544332
Q ss_pred ------hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 475 ------TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 475 ------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.|++++|+++|++.+.++...|+.+|.|++. +.+....+.+.|+|++|+++|++|++ .+++|.
T Consensus 687 ~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-----~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-----DPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-----CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 3899999999999999999999999999988 35788889999999999999999988 777655
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=2.7e-28 Score=290.03 Aligned_cols=354 Identities=17% Similarity=0.159 Sum_probs=278.6
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 158 VWSYIAAIQMGQLSD-RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~-~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
+|-|+.++.+.++.. +..++.+|+.+. +|+.+++.+.+.|++++||.||...+ .++|++++++|++|+. +++.++.
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~~L~~~daik~LV~LL~~~~-~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSRKLNHAEAKKVLVGLITMAT-ADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhccchhhhhhhhccCC-HHHHHHHHHHHHHHhCCCHHHHHH
Confidence 578888888776554 677788888876 45899999999999999999999998 9999999999999997 5778999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
|++.|++|.|+++|++++..+|+.++|+|++|+..+++.+..+.++|+||+|+++|.++.
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~-------------------- 501 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS-------------------- 501 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------------------
Confidence 999999999999999999999999999999999888889999999999999999997662
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..|+++|+|++..+++++..+.+.|+++.|+++
T Consensus 502 -------------------------------------------~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 502 -------------------------------------------QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 1357889999999987555555556688999999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCC-------------HHHHHHhh---------------hcCChhhHHHHHHHHHHH
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESN-------------ADLRRAAF---------------KTNSPAAKAVVDQLLRVI 447 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~-------------~~~r~~~~---------------~~~~~~~~~~v~~Ll~lL 447 (594)
|++++.+.|.+|+|+|.||+...+.. +..+..++ ....-...++++.|..++
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 99999999999999999996322110 00000000 000000134889999999
Q ss_pred hcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcC
Q 040681 448 NDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFN 522 (594)
Q Consensus 448 ~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g 522 (594)
++++ +.+++.|+++|.+++...+.. ..|++++|+.+|.+++.+++++|+|+|.|+..+.+ .+++..+++.|
T Consensus 619 ~sgs-~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~---~~q~~~~v~~G 694 (2102)
T PLN03200 619 SSSK-EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK---ENRKVSYAAED 694 (2102)
T ss_pred cCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC---HHHHHHHHHcC
Confidence 9776 999999999999999755432 23899999999999999999999999999987444 46677889999
Q ss_pred ChHHHHHhccCCch-HhHhHH--------------HHHHHHHHHHHhhhccccccccchHHHHHHHHHHhcccccc
Q 040681 523 AVPPLMRLLRGNDR-TQLHGL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHA 583 (594)
Q Consensus 523 ~i~~Lv~lL~~~~~-vq~~Al--------------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~ 583 (594)
+|++|+++|..++. +...|+ ++...+++..|....+. ..++.|+-..+|+..|..-++
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~---G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE---GTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---CChHHHHHHHHHHHHHHhCCC
Confidence 99999999998876 655554 12223333333322221 257788888888887755443
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.5e-28 Score=240.26 Aligned_cols=351 Identities=17% Similarity=0.234 Sum_probs=278.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHH
Q 040681 157 WVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~ 234 (594)
.|+.+|+++ .+...-.+.+|+|+|.|++.+.....+.+++.|+||.+++||.+++ .+++++++|||+|+++|.+ +|+
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHH
Confidence 366678888 4556667899999999999998888999999999999999999998 9999999999999999655 688
Q ss_pred HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhc-CHH-hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 235 VIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEH-DAL-AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
.+.++|++.+++.+|.+. +..+..++.|+|+|||.. +|. .-..+.+ ++|.|.+|+.+.
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiys~---------------- 255 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYSR---------------- 255 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhhc----------------
Confidence 888999999999999877 568899999999999975 332 2333433 688888887554
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
|| ++...|++|+..|+.|..+..+.+.+.|.-+
T Consensus 256 -------------------------------------------D~----evlvDA~WAiSYlsDg~~E~i~avld~g~~~ 288 (526)
T COG5064 256 -------------------------------------------DP----EVLVDACWAISYLSDGPNEKIQAVLDVGIPG 288 (526)
T ss_pred -------------------------------------------CH----HHHHHHHHHHHHhccCcHHHHHHHHhcCCcH
Confidence 11 2356789999999888888888999999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.|+.+|.+++..+|..|+..+.||.. ++. .+.. +..+.| +++.+..+|.+.. ..++..||++|.|+....
T Consensus 289 RLvElLs~~sa~iqtPalR~vGNIVT---G~D-~QTq-viI~~G----~L~a~~~lLs~~k-e~irKEaCWTiSNITAGn 358 (526)
T COG5064 289 RLVELLSHESAKIQTPALRSVGNIVT---GSD-DQTQ-VIINCG----ALKAFRSLLSSPK-ENIRKEACWTISNITAGN 358 (526)
T ss_pred HHHHHhcCccccccCHHHHhhcCeee---cCc-ccee-hheecc----cHHHHHHHhcChh-hhhhhhhheeecccccCC
Confidence 99999999999999999999999973 332 2332 344555 5666666666554 799999999999998543
Q ss_pred hhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch----HhHhH
Q 040681 471 PAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR----TQLHG 541 (594)
Q Consensus 471 ~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~----vq~~A 541 (594)
... +...||+|+++|..-+..+++|||||+.|..++++. -++..+.+++.|.|+||+.+|...+. ++..|
T Consensus 359 teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~ 437 (526)
T COG5064 359 TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDA 437 (526)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHH
Confidence 221 237799999999999999999999999999886653 46888999999999999999995543 45555
Q ss_pred H-------HHHHHH------HHHH-Hh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 542 L-------ALEQAR------VLTA-LE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 542 l-------~l~~~~------~l~~-Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
+ +..+.. .-.+ .| +.+..+-+|+...+.++.+|+++|+.||+.
T Consensus 438 ~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 438 IENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 5 111110 1111 22 555566788999999999999999999964
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-25 Score=221.59 Aligned_cols=298 Identities=23% Similarity=0.312 Sum_probs=256.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
|+..+.++..+++..|+.||.+++.. +.+|.-|...|++.||.+|-++.+ ..+|..+..+|.|+....++|+.++.+|
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~EnRr~LV~aG 208 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSRENRRVLVHAG 208 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhhhhhhhhhccC
Confidence 44455667778999999999999988 899999999999999999878777 9999999999999999999999999999
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC--ChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAREN--VIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
++|.||.+++++++++|..++.++++++. +...|..+++.+ .++.||+++.+++
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s----------------------- 264 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS----------------------- 264 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC-----------------------
Confidence 99999999999999999999999999998 567899999988 8999999997773
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK 398 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~ 398 (594)
.++|..|.-||++++. +.+.+..+++.|++|.+++||++
T Consensus 265 ----------------------------------------~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs 303 (550)
T KOG4224|consen 265 ----------------------------------------DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQS 303 (550)
T ss_pred ----------------------------------------hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhC
Confidence 1346678899999974 67789999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-----h
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA-----R 473 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~-----~ 473 (594)
+..........|+.||+ +...|. ..... .+++.+|+++|+..++.+++..|..+|+||+...+. .
T Consensus 304 ~~~plilasVaCIrnis-ihplNe-----~lI~d----agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 304 PMGPLILASVACIRNIS-IHPLNE-----VLIAD----AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred cchhHHHHHHHHHhhcc-cccCcc-----cceec----ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 88887788899999986 444553 12323 348899999999999899999999999999975432 2
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHh
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH 540 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~ 540 (594)
+.|+||.+..++-++...+|.+-..++.-++- ..+.+.++.+.|.++.|+.++.+... +|-+
T Consensus 374 esgAi~kl~eL~lD~pvsvqseisac~a~Lal-----~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN 436 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDGPVSVQSEISACIAQLAL-----NDNDKEALLDSGIIPILIPWTGSESEEVRGN 436 (550)
T ss_pred hcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-----ccccHHHHhhcCCcceeecccCccchhhccc
Confidence 34999999999999999999998888888776 23567889999999999999987765 7654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.3e-23 Score=203.79 Aligned_cols=329 Identities=22% Similarity=0.284 Sum_probs=259.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC--C
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL--G 241 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g--~ 241 (594)
.-++.|..++..|..+|.++... .++|+.++..|++|.||.++++++ .++|+.++.+++|++.+.-.|+.+++.+ .
T Consensus 175 LakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 33678888999999999999865 899999999999999999999999 9999999999999999999999999988 9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcc
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEK 321 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~ 321 (594)
+|.||.+..+++++++-.|..+|.||++ +.+.+..+.+.|++|.||++|+++..
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~------------------------- 306 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMG------------------------- 306 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcch-------------------------
Confidence 9999999999999999999999999998 45788889999999999999976621
Q ss_pred cccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCC-
Q 040681 322 NSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ- 400 (594)
Q Consensus 322 ~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~- 400 (594)
.+......+++|++ -++-+--.|++.|.+.+|+.+|..++
T Consensus 307 --------------------------------------plilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 307 --------------------------------------PLILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred --------------------------------------hHHHHHHHHHhhcc-cccCcccceecccchhHHHHHHhcCCc
Confidence 11233456788986 46777888999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh----hc
Q 040681 401 GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE----TR 476 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~----~~ 476 (594)
+++|..|..+|.||+.-.++|. + +|. .+| .++.+..++..++ ..+|..-..++.-|+-+...++ .|
T Consensus 348 EeiqchAvstLrnLAasse~n~---~-~i~-esg----Ai~kl~eL~lD~p-vsvqseisac~a~Lal~d~~k~~lld~g 417 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNV---S-VIR-ESG----AIPKLIELLLDGP-VSVQSEISACIAQLALNDNDKEALLDSG 417 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhh---H-HHh-hcC----chHHHHHHHhcCC-hhHHHHHHHHHHHHHhccccHHHHhhcC
Confidence 5699999999999986555543 4 344 333 6788888887766 8899888888888886655444 39
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHc-----CCh-HHHHHhccCCch-HhHhHHHHHHHHH
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF-----NAV-PPLMRLLRGNDR-TQLHGLALEQARV 549 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~-----g~i-~~Lv~lL~~~~~-vq~~Al~l~~~~~ 549 (594)
++|.|+..+.+.+.+|+.+|+.||.||++ .++|-..++++ +|| ..|++++.+++. ++.-|. -.+
T Consensus 418 i~~iLIp~t~s~s~Ev~gNaAaAL~Nlss-----~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~----wTI 488 (550)
T KOG4224|consen 418 IIPILIPWTGSESEEVRGNAAAALINLSS-----DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIAR----WTI 488 (550)
T ss_pred CcceeecccCccchhhcccHHHHHHhhhh-----hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHH----HHH
Confidence 99999999999999999999999999987 34665566654 455 458888887776 443332 223
Q ss_pred HHHHhhhcc---ccccccchHHHHHHHHHHhc
Q 040681 550 LTALEGADR---TVVAQHPELKELVSEALYHL 578 (594)
Q Consensus 550 l~~Le~~~~---~~~~q~~~~~~l~~~a~~~l 578 (594)
...+|...- .++-.++++.+++.+-..|.
T Consensus 489 ~qLle~h~~~~~~~i~~~ddii~~~~~~~~r~ 520 (550)
T KOG4224|consen 489 QQLLEDHDLPLTAFIQSSDDIIELLNDIVARD 520 (550)
T ss_pred HHHHHhCCccHHHHHhCchhHHHHHHHHHHHh
Confidence 334442111 11112456666666666655
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=1.1e-17 Score=185.93 Aligned_cols=336 Identities=22% Similarity=0.258 Sum_probs=259.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
|.-|+..|..++.+....++..|..++.. .+|+..+.+.|+|++|++++.+++ .+++..++++|.||+.|++.|..++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45578889999999999999999999988 789999999999999999999988 9999999999999999999999999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+.|.+|.|+.+|.++ ..+..+..+|++||. +++++..|...++++.+++++-.++...
T Consensus 370 ~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~------------------- 427 (708)
T PF05804_consen 370 SLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEE------------------- 427 (708)
T ss_pred HCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCcc-------------------
Confidence 999999999999865 466779999999998 5589999999999999999876552100
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
+...+...+.|++ .++.+.+.+++.|+++.|++..-
T Consensus 428 -------------------------------------------v~~eliaL~iNLa-~~~rnaqlm~~g~gL~~L~~ra~ 463 (708)
T PF05804_consen 428 -------------------------------------------VQLELIALLINLA-LNKRNAQLMCEGNGLQSLMKRAL 463 (708)
T ss_pred -------------------------------------------ccHHHHHHHHHHh-cCHHHHHHHHhcCcHHHHHHHHH
Confidence 1223466778896 57888999999999999999876
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-----
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----- 472 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----- 472 (594)
+..+.+- ...|.||+ .++...+. .|. ..+..|++++.+.++++....|+++|+||......
T Consensus 464 ~~~D~lL---lKlIRNiS---~h~~~~k~-~f~-------~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll 529 (708)
T PF05804_consen 464 KTRDPLL---LKLIRNIS---QHDGPLKE-LFV-------DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLL 529 (708)
T ss_pred hcccHHH---HHHHHHHH---hcCchHHH-HHH-------HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 6554432 35788887 55545555 344 37888999999888899999999999999854321
Q ss_pred hhhccHHHHHHhccCC--CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--c-h--HhHh-HH-H
Q 040681 473 RETRVIGPLVAHLSHR--NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--D-R--TQLH-GL-A 543 (594)
Q Consensus 473 ~~~~~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~-~--vq~~-Al-~ 543 (594)
.+.+++|.|..+|..+ ..++..+++..++.+++ +++....+.+.|.++.|+.+|... | + +|.- ++ .
T Consensus 530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-----d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-----DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-----CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 1238899999999544 56899999999999988 356677888999999999999943 2 3 3442 22 1
Q ss_pred -----------HHHHHHHHHHhhhccccccccchHHHHHHHHHHhcccccc
Q 040681 544 -----------LEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHA 583 (594)
Q Consensus 544 -----------l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~ 583 (594)
+.+.++...|-..-+. .++++++....++.++--|..
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d---~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHD---KNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhCH
Confidence 1112222222111111 246888888888877755543
No 10
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=5.5e-18 Score=184.05 Aligned_cols=355 Identities=17% Similarity=0.161 Sum_probs=249.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC---ChhHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN---DQERV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~---~~~~~ 233 (594)
.+.+.|.+|.+.++..+..|+..|..+|+++.+.+..+.+.|+|+.||.+|.+.+ .++|.+|+++|.||.. +++++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccc
Confidence 3567888999999999999999999999999999999999999999999999998 9999999999999985 34589
Q ss_pred HHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCc---CCCcc-Cccchhh
Q 040681 234 RVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETF---VDDPR-ANSGKQS 308 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~-~v~~~~s 308 (594)
-.|.+.++|+.++++|+. .|.++++.++.+|+||+++| ..+..+.. .++..|-..+-.+.. .++.. .+....-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCccccccccee
Confidence 999999999999999997 59999999999999999975 45555543 355555554332211 00000 0000000
Q ss_pred HH--HHHHHhhhhcc-----cccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-hh-
Q 040681 309 IH--TIVQINKEMEK-----NSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV-AN- 379 (594)
Q Consensus 309 i~--~l~l~~~~~~~-----~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~-~~- 379 (594)
+. .-|+.|++... .++...|.|..|+.+.++.- .....++ +..++|...|+||+---. ++
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i------~~~~~d~-----K~VENcvCilRNLSYrl~~Evp 459 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAI------QKSDLDS-----KSVENCVCILRNLSYRLEAEVP 459 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHH------Hhccccc-----hhHHHHHHHHhhcCchhhhhcC
Confidence 00 12555665422 33456788888875443110 0011222 224555555666531100 00
Q ss_pred -----------------------------HHH----------------------HHhhCcHHHHHHHhh-hCCHHHHHHH
Q 040681 380 -----------------------------SRR----------------------ISETKGLLCLAKLVE-KEQGELQFNC 407 (594)
Q Consensus 380 -----------------------------~~~----------------------i~e~g~l~~L~~LL~-~~~~~v~~~A 407 (594)
.+. ....-+|..-..||. +.+..+.+++
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEas 539 (717)
T KOG1048|consen 460 PKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEAS 539 (717)
T ss_pred HhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHh
Confidence 000 011112333334443 4567889999
Q ss_pred HHHHHHHHHHhcCCH-HHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh---ccHHHHHH
Q 040681 408 LMTIMEITAAAESNA-DLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET---RVIGPLVA 483 (594)
Q Consensus 408 ~~aL~nL~~~~~~~~-~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~---~~i~~Lv~ 483 (594)
+.+|.|+++...--+ .++. .+... +.+.+.|+++|+..+ +.+.+.++.+|+||+++..+++. ++|+.||+
T Consensus 540 aGaLQNltA~~~~~~~~~~~-~v~~k----ekgl~~l~~ll~~~~-~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~ 613 (717)
T KOG1048|consen 540 AGALQNLTAGLWTWSEYMRG-AVFRK----EKGLPPLVELLRNDD-SDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVR 613 (717)
T ss_pred hhhHhhhhccCCcchhHHHh-hhhhh----ccCccHHHHHHhcCC-chHHHHHHHHHhhhccCchhhhhhhcchHHHHHH
Confidence 999999996654333 3444 34322 347899999999877 89999999999999988776553 79999999
Q ss_pred hccCC------CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 484 HLSHR------NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 484 lL~~~------~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
.|.+. +.++...+|.+|.|++. +| .++.+.+.+.+|++.|+.+..+..
T Consensus 614 ~Lp~~~~~~~~sedtv~~vc~tl~niv~-~~---~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 614 CLPGSGPSTSLSEDTVRAVCHTLNNIVR-KN---VLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred hCcCCCCCcCchHHHHHHHHHhHHHHHH-Hh---HHHHHHHHhccChHHHHHHhcccC
Confidence 99432 46889999999999987 55 589999999999999999988643
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=1.3e-16 Score=177.23 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhc
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLS 250 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~ 250 (594)
..-+.+...|.|++.+ +++...+++.|+|+.|+++|++++ .++...+++.|.+|+-..+++..+.+.|++++|++++.
T Consensus 264 qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3344666779999976 899999999999999999999988 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCc
Q 040681 251 DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNY 330 (594)
Q Consensus 251 ~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~ 330 (594)
+++.+++..+.++|.||+. ++..|..+++.|++|.|+.+|.++.
T Consensus 342 s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~----------------------------------- 385 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN----------------------------------- 385 (708)
T ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc-----------------------------------
Confidence 9999999999999999998 5689999999999999999997652
Q ss_pred ccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-CCHHHHHHHHH
Q 040681 331 RPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-EQGELQFNCLM 409 (594)
Q Consensus 331 ~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-~~~~v~~~A~~ 409 (594)
.+..+...|.+++. +++.+..+...+++|.++++|-. +++.++...++
T Consensus 386 ------------------------------~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~elia 434 (708)
T PF05804_consen 386 ------------------------------FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIA 434 (708)
T ss_pred ------------------------------hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHH
Confidence 13346788999975 67888889999999999998755 45667778888
Q ss_pred HHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh---ccHHHHHHhcc
Q 040681 410 TIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET---RVIGPLVAHLS 486 (594)
Q Consensus 410 aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~---~~i~~Lv~lL~ 486 (594)
.+.|++ .++...+ .+. .. ++++.|++..-+..++ ..++.++|++...+..+. +++.+|+.++.
T Consensus 435 L~iNLa----~~~rnaq-lm~-~g----~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 435 LLINLA----LNKRNAQ-LMC-EG----NGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVS 500 (708)
T ss_pred HHHHHh----cCHHHHH-HHH-hc----CcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 888887 3443444 233 22 2566666554433322 235899999987755554 56778888885
Q ss_pred C-CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 487 H-RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 487 ~-~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
. .+.+...++..+|+|+..+ + .+..+.+.+.+.+|.|.++|..+
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~-~---ld~~~ll~~~~llp~L~~~L~~g 545 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIP-D---LDWAQLLQEYNLLPWLKDLLKPG 545 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccC-C---cCHHHHHHhCCHHHHHHHHhCCC
Confidence 4 5778999999999999873 2 24455556789999999999855
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2e-15 Score=148.58 Aligned_cols=352 Identities=16% Similarity=0.185 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHHHHHH----hccCCCceeeeeeecchhhHHHHHHHHHh-hcCcchhhhhccc-CCCCCCCCCcccccC
Q 040681 73 VVSEVSKNLERSLTLVR----KCKRQSVLRRVVTIVSAADFRKLLNLLDA-SVGDMRWLLSIFD-SENGGASGGIVLTLP 146 (594)
Q Consensus 73 ~~~~~~~~l~~~~~l~~----~c~~~g~~~r~~~~~~~~~~~~~~~~l~~-~~~d~~~ll~~~~-~~~~~~~~~~~~~l~ 146 (594)
|=..+.+.+++...|.+ .|+. ++..|+..-. +++++.++..++. +.++...+++... ... ..-+.|
T Consensus 68 i~e~i~~~~~E~s~ll~~l~d~ck~-~~A~r~la~~-~ga~~~~it~~~la~~~~~~~l~ksL~al~~------lt~~qp 139 (461)
T KOG4199|consen 68 IKEHIGQKLEETTELLEQLADECKK-SLAHRVLAGK-NGAHDALITLLELAESPNESVLKKSLEAINS------LTHKQP 139 (461)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhh-hHHHHHHhcc-CCCcchhhhHHHHhhCCchhHHHHHHHHHHH------hhcCCc
Confidence 33445566777776554 5555 6777766654 7888888877663 4566665554221 000 011345
Q ss_pred CcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh-ccCCCHHHHHHHHHHHHH
Q 040681 147 PIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL-KETASSEAQSAAATALYN 225 (594)
Q Consensus 147 ~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~ 225 (594)
.+...+.+ ..+.+++. ++.++.+.......+++.-|..++.||+.+++.+..+.+.+.| ..+. ..+..++.|+++.
T Consensus 140 dl~da~g~-~vvv~lL~-~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk-~~~VRel~~a~r~ 216 (461)
T KOG4199|consen 140 DLFDAEAM-AVVLKLLA-LKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK-TRTVRELYDAIRA 216 (461)
T ss_pred chhccccH-HHHHHHHh-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc-cHHHHHHHHHHHH
Confidence 55444433 34555543 3667778888889999999999999999999999999998655 5566 5788899999999
Q ss_pred hhCChhHH----------HHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 226 IANDQERV----------RVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 226 La~~~~~~----------~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
|..+++.| +.|+++|++..|+..|.-+ ++++......+|..|+.++ +....+.+.||+..|+.++.+.
T Consensus 217 l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 217 LLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDS 295 (461)
T ss_pred hcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhh
Confidence 99877654 7888999999999999988 8999999999999999977 5667778999999999999775
Q ss_pred CcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc
Q 040681 295 TFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR 374 (594)
Q Consensus 295 ~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~ 374 (594)
..++ . ..+...++..|+.|+
T Consensus 296 n~~~----------------------------------------------------------~-r~l~k~~lslLralA- 315 (461)
T KOG4199|consen 296 NEQG----------------------------------------------------------N-RTLAKTCLSLLRALA- 315 (461)
T ss_pred chhh----------------------------------------------------------H-HHHHHHHHHHHHHHh-
Confidence 3111 0 123455778889996
Q ss_pred CChhhHHHHHhhCcHHHHHHHhhh--CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC
Q 040681 375 GSVANSRRISETKGLLCLAKLVEK--EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS 452 (594)
Q Consensus 375 ~~~~~~~~i~e~g~l~~L~~LL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~ 452 (594)
|+++++..|++.|+.+.++.++.. .++.+...++.+++-|| -..|+.... |. ..| .-+..+..++.++-
T Consensus 316 G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~---LR~pdhsa~-~i-e~G----~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 316 GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC---LRSPDHSAK-AI-EAG----AADLAVQAMKAHPV 386 (461)
T ss_pred CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH---hcCcchHHH-HH-hcc----hHHHHHHHHHhCcH
Confidence 899999999999999999999864 45677777777887666 556665553 44 233 44556677777764
Q ss_pred -hhhHHHHHHHHHHhhcCChhhhh----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 453 -PTLQIPAIKSIGSLARTFPARET----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 453 -~~v~~~a~~aL~~La~~~~~~~~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..+|..++..++|++..+.+..+ .++..|++.-...++.....|-.||..+.+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 67899999999999976554433 668888888888888888888889999988
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.59 E-value=8.5e-14 Score=151.71 Aligned_cols=332 Identities=16% Similarity=0.130 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDR--NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~--~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
.|..+|+.|.+...+++.+|+++|+|+..++.. |+..|.+.+|||.|+++|+...+.+++++.+.+|+||+..+..+.
T Consensus 276 gI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~ 355 (717)
T KOG1048|consen 276 GIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM 355 (717)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH
Confidence 477799999999999999999999999997666 999999999999999999974339999999999999999977777
Q ss_pred HHHhcCCHHHHHHhhcCC--------------CHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChhhHHHhhhcCCcCCC
Q 040681 235 VIVSELGVPTIVNVLSDS--------------IMKVQIQVASLVARMAEHDALAQDDFARE-NVIRPLVTLLSFETFVDD 299 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--------------~~~v~~~aa~aL~~La~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~ 299 (594)
.|+.. +++.|..-+-.+ +.++-.+++.+|.|+++...+.|+.+.++ |.|..|+..+++.....+
T Consensus 356 ~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 356 LIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred HHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 77753 577776644211 25688899999999999777899999886 669999999874321111
Q ss_pred ccCccchhhHHHH-HHHhhhhccc--cc-------ccC----CCccc--ccchhc----c-------c--cCCCccccc-
Q 040681 300 PRANSGKQSIHTI-VQINKEMEKN--SF-------VGS----KNYRP--YLYSEY----C-------S--SRSGQNRKD- 349 (594)
Q Consensus 300 ~~~v~~~~si~~l-~l~~~~~~~~--~~-------~~~----g~~~~--L~~~~~----~-------~--s~~~~~~~~- 349 (594)
. .++..-..+ ++-|+++.-. +. .+. +.-+| ...++. . + ..-....|+
T Consensus 435 ~---d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 435 L---DSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred c---cchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 1 111100111 3344443210 00 000 00000 000000 0 0 000000001
Q ss_pred cccCChHH------------HHHHHHHHHHHHHHhccCC----hhhHHHH-HhhCcHHHHHHHhhhCCHHHHHHHHHHHH
Q 040681 350 RENEKPEV------------KIKLKIACAEALWMLARGS----VANSRRI-SETKGLLCLAKLVEKEQGELQFNCLMTIM 412 (594)
Q Consensus 350 ~~~~dp~~------------k~~l~~~a~~aL~~L~~~~----~~~~~~i-~e~g~l~~L~~LL~~~~~~v~~~A~~aL~ 412 (594)
.-...|++ +....+.+++||-||+.++ ..++..+ ..+.+++.++.||+.+++.+...++.+|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 00111221 2345678899999998776 3445555 78899999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-----hhhHHHHHHHHHHhhcCChhh-----hhccHHHHH
Q 040681 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS-----PTLQIPAIKSIGSLARTFPAR-----ETRVIGPLV 482 (594)
Q Consensus 413 nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~-----~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv 482 (594)
||+ .++.++.. +. +.+++.|++.|..+.. +++...++.+|.|+.+..... +.+.++.|+
T Consensus 592 Nls----~d~rnk~l-ig------k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~ 660 (717)
T KOG1048|consen 592 NLS----RDIRNKEL-IG------KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLR 660 (717)
T ss_pred hhc----cCchhhhh-hh------cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHH
Confidence 997 45555552 22 4588999999987665 788899999999999755432 338899999
Q ss_pred HhccC-CCHHHHHHHHHHHHHh
Q 040681 483 AHLSH-RNQEVATEAAIALQKF 503 (594)
Q Consensus 483 ~lL~~-~~~~v~~~Aa~aL~nl 503 (594)
.+..+ .++.+.+.|+..|..|
T Consensus 661 ~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 661 LISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred HHhcccCCHHHHHHHHHHHHHH
Confidence 98855 5668888888888887
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=1e-12 Score=130.53 Aligned_cols=200 Identities=18% Similarity=0.191 Sum_probs=162.4
Q ss_pred HHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH
Q 040681 194 IVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL 273 (594)
Q Consensus 194 i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~ 273 (594)
+.+.+.+..|+.+|+..+++.+++.+..+++|.+.++.++..|.+.|+++.+..+|.++++.+++.|.++|.||+.+. +
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-E 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-h
Confidence 467788999999999875599999999999999999999999999999999999999999999999999999999854 6
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
++..+.. .++.+++.+.+... ++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~l--ns----------------------------------------------------- 109 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPL--NS----------------------------------------------------- 109 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCC--CC-----------------------------------------------------
Confidence 8888754 46666665443310 11
Q ss_pred ChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCC
Q 040681 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~ 433 (594)
.++..+.++|.+|+.. ++.+..+. +.++.|+.||.+|+..+|.+++.+|.||+ .++++.+..+..
T Consensus 110 ------~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS----~np~~~~~Ll~~-- 174 (254)
T PF04826_consen 110 ------EVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS----ENPDMTRELLSA-- 174 (254)
T ss_pred ------HHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc----cCHHHHHHHHhc--
Confidence 2466789999999754 44455554 47999999999999999999999999997 567665533321
Q ss_pred hhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 434 PAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 434 ~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++..++.+++...+.++...++..+.|+....
T Consensus 175 ----q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 175 ----QVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred ----cchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 267888999988877889999999999997543
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.7e-11 Score=119.80 Aligned_cols=380 Identities=14% Similarity=0.167 Sum_probs=250.1
Q ss_pred eeecchhhHHHHHHHHHhhcCcchhhhhcccCCCCCCCCCcccccCCcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040681 101 VTIVSAADFRKLLNLLDASVGDMRWLLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIEL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~d~~~ll~~~~~~~~~~~~~~~~~l~~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L 180 (594)
|.+.|..+-+..+.++++..+++..+.+-++-+.. .+.|.+ .+.+.++-.-+. .-++. -...|
T Consensus 21 f~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~-------~~qp~i------~~~~~~i~e~i~-~~~~E---~s~ll 83 (461)
T KOG4199|consen 21 FSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQ-------TGQPVI------NETVDKIKEHIG-QKLEE---TTELL 83 (461)
T ss_pred HhcCccccchHHHHHHHhccCcccccccccCCCCC-------CCCccH------HHhHHHHHHHHH-hhhHH---HHHHH
Confidence 33447778889999999999999877654432111 122322 111111111111 11111 12222
Q ss_pred HHhh---ccCchhHHHHHhcCChHHHHHhhc---cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC--
Q 040681 181 ASLA---KDNDRNKKIIVEEGGVPPLLKLLK---ETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-- 252 (594)
Q Consensus 181 ~~la---~~~~~~~~~i~~~g~I~~Lv~LL~---~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-- 252 (594)
.+++ +.+...+-.-.+.|+.+.++.++. +++ ..+..+++.+|..+... ...+.++-++..++++|...
T Consensus 84 ~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~~~~~ 159 (461)
T KOG4199|consen 84 EQLADECKKSLAHRVLAGKNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLALKVE 159 (461)
T ss_pred HHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHhcccc
Confidence 2222 111111122224566676665543 344 66777788888777653 34566788999999999654
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCccc
Q 040681 253 IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRP 332 (594)
Q Consensus 253 ~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~ 332 (594)
+.++.......+..-|-.++.+|+.|.+.++++.+...|..+. +
T Consensus 160 ~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g---k--------------------------------- 203 (461)
T KOG4199|consen 160 SEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG---K--------------------------------- 203 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC---c---------------------------------
Confidence 7778888888888888888899999999999999988876552 1
Q ss_pred ccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh----------hHHHHHhhCcHHHHHHHhhhC-CH
Q 040681 333 YLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA----------NSRRISETKGLLCLAKLVEKE-QG 401 (594)
Q Consensus 333 L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~----------~~~~i~e~g~l~~L~~LL~~~-~~ 401 (594)
..+.+.+++|++.|.. +++ .-+.|+.+|++..|...+.-+ ++
T Consensus 204 --------------------------~~~VRel~~a~r~l~~-dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 204 --------------------------TRTVRELYDAIRALLT-DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred --------------------------cHHHHHHHHHHHHhcC-CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 1124556777877753 333 245678889999999999765 46
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhH---HHHHHHHHHhhcCChhhh----
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ---IPAIKSIGSLARTFPARE---- 474 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~---~~a~~aL~~La~~~~~~~---- 474 (594)
++-...+.+|..|+ - +.+++++ +. .+ |+++.|++++.+.+....+ ..|+..|+.|+.+...+.
T Consensus 257 ~~L~~l~~tl~~lA---V-r~E~C~~-I~-e~----GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~ 326 (461)
T KOG4199|consen 257 DSLVSLSTTLKALA---V-RDEICKS-IA-ES----GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE 326 (461)
T ss_pred cHHHHHHHHHHHHH---H-HHHHHHH-HH-Hc----cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 77777888887665 3 4567774 44 33 3899999999986655554 678899999998776543
Q ss_pred hccHHHHHHhc--cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch---HhHhHHHHHHHHH
Q 040681 475 TRVIGPLVAHL--SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR---TQLHGLALEQARV 549 (594)
Q Consensus 475 ~~~i~~Lv~lL--~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~---vq~~Al~l~~~~~ 549 (594)
.|+.+.++.++ ++.++.|..+++.+++-++- +. ++|...+++.|+-...++.++-++. +|+.|..+-+.-+
T Consensus 327 ~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L-R~---pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 327 KGGLDKIITLALRHSDDPLVIQEVMAIISILCL-RS---PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh-cC---cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 48999999988 77889999999999998876 55 5999999999999999999996654 8888872221111
Q ss_pred ------HHH-----HhhhccccccccchHHHHHHHHHHhc
Q 040681 550 ------LTA-----LEGADRTVVAQHPELKELVSEALYHL 578 (594)
Q Consensus 550 ------l~~-----Le~~~~~~~~q~~~~~~l~~~a~~~l 578 (594)
... .|...+.-+..++..+.....|+.-|
T Consensus 403 ~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 403 VRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 111 12222223345777777777776654
No 16
>PRK09687 putative lyase; Provisional
Probab=99.52 E-value=1.2e-12 Score=132.58 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=184.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+.+|+..|.+.+..+|..|++.|..+-. ...++.+.+++++.+ +.++..|+++|+.|...+..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc-----
Confidence 4457788899999999999999987753 245788888998888 99999999999999763322
Q ss_pred hcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIVNV-LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv~l-L~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...+++.|..+ ++++++.|+..|+.+|++++...... ...++..|...+.+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~---------------------- 140 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDK---------------------- 140 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCC----------------------
Confidence 12357788877 67779999999999999996532100 011233333333322
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
+ ..++..++.+|..+ ++++ +++.|+.+|
T Consensus 141 -------------------------------------~----~~VR~~a~~aLg~~--~~~~---------ai~~L~~~L 168 (280)
T PRK09687 141 -------------------------------------S----TNVRFAVAFALSVI--NDEA---------AIPLLINLL 168 (280)
T ss_pred -------------------------------------C----HHHHHHHHHHHhcc--CCHH---------HHHHHHHHh
Confidence 1 13477788888877 3444 799999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
.+++..++..|+.+|.++. .+++ .+++.|+..|.+.+ +.|+..|+.+|+.+- ...
T Consensus 169 ~d~~~~VR~~A~~aLg~~~---~~~~---------------~~~~~L~~~L~D~~-~~VR~~A~~aLg~~~------~~~ 223 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNK---YDNP---------------DIREAFVAMLQDKN-EEIRIEAIIGLALRK------DKR 223 (280)
T ss_pred cCCCHHHHHHHHHHHhcCC---CCCH---------------HHHHHHHHHhcCCC-hHHHHHHHHHHHccC------Chh
Confidence 9999999999999997662 2232 26677888887665 999999999999975 357
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc-CCch-HhHhHH
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDR-TQLHGL 542 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~-~~~~-vq~~Al 542 (594)
++++|++.|.+++ ++..|+.||+++.. .-++|.|.+++. +.|. ++..|.
T Consensus 224 av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 224 VLSVLIKELKKGT--VGDLIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred HHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHH
Confidence 9999999998876 67899999999965 247899999997 6676 776654
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.44 E-value=1.8e-12 Score=146.52 Aligned_cols=260 Identities=17% Similarity=0.204 Sum_probs=207.8
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-----------CCHHHHHHHHHHHHHhhC-ChhHHHHHH-hcCC
Q 040681 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-----------ASSEAQSAAATALYNIAN-DQERVRVIV-SELG 241 (594)
Q Consensus 175 ~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-----------~~~~v~e~A~~aL~~La~-~~~~~~~iv-~~g~ 241 (594)
.|+..|..+.++ +++|+.+-+.|++..+-.||... .+..++..|..+|.||.. |..++..++ .-|.
T Consensus 317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 566778888877 99999999999999888877431 124688999999999997 555787777 6789
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHh-hhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTL-LSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+..+|..|.+.+.++.+..+.+|.||+-+ |...+..+.+.|-+..|+.. +....
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k------------------------ 451 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK------------------------ 451 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc------------------------
Confidence 99999999999999999999999999976 43467777778888877764 22220
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHh-hCcHHHHHHHhhh
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISE-TKGLLCLAKLVEK 398 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e-~g~l~~L~~LL~~ 398 (594)
|+ .......|||||+....+|+..|+. .|++..|+.+|..
T Consensus 452 -------------------------------Es--------TLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY 492 (2195)
T KOG2122|consen 452 -------------------------------ES--------TLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSY 492 (2195)
T ss_pred -------------------------------cc--------hHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccc
Confidence 01 1234678999998777888888875 6889999999975
Q ss_pred C----CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 399 E----QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 399 ~----~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
. .-.+.+++-++|.|.+..-..+.+.|+ +...++ ++..|+..|+++. -.+...+|++||||+...+..|
T Consensus 493 ~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ-ILR~~N-----CLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQ 565 (2195)
T KOG2122|consen 493 EGQSNTLAIIESAGGILRNVSSLIATCEDYRQ-ILRRHN-----CLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPEDQ 565 (2195)
T ss_pred cCCcchhhhhhcCccHHHHHHhHhhccchHHH-HHHHhh-----HHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHHHH
Confidence 4 246778899999998866556667777 344444 8999999999987 8899999999999997666544
Q ss_pred h-----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 475 T-----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 ~-----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
. |+++.|..++++++..+.+-++.||.|+..
T Consensus 566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 3 899999999999999999999999999865
No 18
>PRK09687 putative lyase; Provisional
Probab=99.43 E-value=9.7e-12 Score=126.10 Aligned_cols=252 Identities=14% Similarity=0.093 Sum_probs=185.0
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
-.++.|+.+|.+.+ ..++..|+++|+.+.. ..+++.+..+++++++.+|..++++|+.|-.... .
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 35889999999988 9999999999998865 3467888899999999999999999999954221 1
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
...+++.|..++.++. +
T Consensus 88 --~~~a~~~L~~l~~~D~---d---------------------------------------------------------- 104 (280)
T PRK09687 88 --QDNVFNILNNLALEDK---S---------------------------------------------------------- 104 (280)
T ss_pred --hHHHHHHHHHHHhcCC---C----------------------------------------------------------
Confidence 1225666766643331 1
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
..++..|+.+|++++...... ...++..+..++.+++..|+..++++|.++. ++
T Consensus 105 -~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----~~--------------- 158 (280)
T PRK09687 105 -ACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----DE--------------- 158 (280)
T ss_pred -HHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----CH---------------
Confidence 135788999999986433211 1225666777788889999999999996542 21
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHH
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKA 517 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~ 517 (594)
..++.|+.+|++.+ +.|+..|+.+||.+.. ....+++.|+.+|.+.+.+|+.+|+++|+++-.
T Consensus 159 ~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------------ 221 (280)
T PRK09687 159 AAIPLLINLLKDPN-GDVRNWAAFALNSNKY----DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------------ 221 (280)
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCC----CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------------
Confidence 26788999998766 8899999999999932 123688999999999999999999999999743
Q ss_pred HHHcCChHHHHHhccCCchHhHh---HH-HHHHHHHHHHHhhhcc-ccccccchHHHHHHHHHHh
Q 040681 518 IIEFNAVPPLMRLLRGNDRTQLH---GL-ALEQARVLTALEGADR-TVVAQHPELKELVSEALYH 577 (594)
Q Consensus 518 i~~~g~i~~Lv~lL~~~~~vq~~---Al-~l~~~~~l~~Le~~~~-~~~~q~~~~~~l~~~a~~~ 577 (594)
..++++|++.|..++. +.. || ++...+++..|....+ .. |+.++.-..+|++.
T Consensus 222 ---~~av~~Li~~L~~~~~-~~~a~~ALg~ig~~~a~p~L~~l~~~~~---d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 ---KRVLSVLIKELKKGTV-GDLIIEAAGELGDKTLLPVLDTLLYKFD---DNEIITKAIDKLKR 279 (280)
T ss_pred ---hhHHHHHHHHHcCCch-HHHHHHHHHhcCCHhHHHHHHHHHhhCC---ChhHHHHHHHHHhc
Confidence 3589999999998774 333 33 5555667777763322 22 67777666666553
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.42 E-value=6.1e-11 Score=120.66 Aligned_cols=300 Identities=13% Similarity=0.050 Sum_probs=218.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC------CHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA------SSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~------~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+...+.|.++..+..++|+|+|.+|+++|..+.+.||-..++..|+... +.+...-+...|.|-.. +++.+.
T Consensus 93 rq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~a 172 (604)
T KOG4500|consen 93 RQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRA 172 (604)
T ss_pred HhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 33446778899999999999999999999999999999888888886531 13455556678888776 556799
Q ss_pred HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 235 VIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
++++.|+++.|+..+.-+ +....+.......||.+.- +-....+.++.....|+.+|......
T Consensus 173 q~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~-------------- 238 (604)
T KOG4500|consen 173 QVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE-------------- 238 (604)
T ss_pred HHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc--------------
Confidence 999999999999988755 6677777776666665431 11234445566667777777544210
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
....++...|...+ .++.++-.+++.|.+.+
T Consensus 239 ------------------------------------------------d~~eM~feila~~a-end~Vkl~la~~gl~e~ 269 (604)
T KOG4500|consen 239 ------------------------------------------------DIDEMIFEILAKAA-ENDLVKLSLAQNGLLED 269 (604)
T ss_pred ------------------------------------------------chhhHHHHHHHHHh-cCcceeeehhhcchHHH
Confidence 12344566777775 68899999999999999
Q ss_pred HHHHhhhCCH-HHH-------HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 392 LAKLVEKEQG-ELQ-------FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 392 L~~LL~~~~~-~v~-------~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
+..+++.-.. .-+ ..++....-|. .++..++. .+. . +.+++.++..++|.+ .+.+..+.-+|
T Consensus 270 ~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll---tGDeSMq~-L~~--~---p~~l~~~~sw~~S~d-~~l~t~g~Lai 339 (604)
T KOG4500|consen 270 SIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL---TGDESMQK-LHA--D---PQFLDFLESWFRSDD-SNLITMGSLAI 339 (604)
T ss_pred HHHHHHhcccccchHHHHHHHHhhhhHhhhhh---cCchHHHH-Hhc--C---cHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 9999986221 111 11222222222 45655666 232 1 348899999998776 88999999999
Q ss_pred HHhhcCChhh----hhccHHHHHHhc-----cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 464 GSLARTFPAR----ETRVIGPLVAHL-----SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 464 ~~La~~~~~~----~~~~i~~Lv~lL-----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
||++|+.... +.+++..|+.+| -+++.+++..++.||+|++. ++.++..++.+|..+.++..++..
T Consensus 340 gNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-----Pv~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 340 GNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-----PVSNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-----cCCchhhccccchHHHHHHHHHhc
Confidence 9999987754 448899999988 35788899999999999987 356788899999999999999976
Q ss_pred ch-HhH
Q 040681 535 DR-TQL 539 (594)
Q Consensus 535 ~~-vq~ 539 (594)
.+ ++.
T Consensus 415 ~ppv~f 420 (604)
T KOG4500|consen 415 SPPVTF 420 (604)
T ss_pred CCcchH
Confidence 55 543
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.39 E-value=5.6e-11 Score=118.17 Aligned_cols=187 Identities=20% Similarity=0.205 Sum_probs=159.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
+..++..|+ +.|+..+..|..++.+.+.. +.++..|.+.|+++.+..+|..++ +.+++.|+++|.|++.+.+++..|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPN-PSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChhhHHHH
Confidence 456788887 56899999999999998866 899999999999999999999998 999999999999999999998887
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
-. .++.+++...+. +.++|..+..+|.+|+..+ +.+..+.. .++.|+.+|..++
T Consensus 92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~~--~i~~ll~LL~~G~------------------- 147 (254)
T PF04826_consen 92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLAN--YIPDLLSLLSSGS------------------- 147 (254)
T ss_pred HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHHh--hHHHHHHHHHcCC-------------------
Confidence 43 577777765554 7899999999999998754 56777754 7999999998873
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
..++..+.++|.||+ .++...+.+...+++..|+.
T Consensus 148 --------------------------------------------~~~k~~vLk~L~nLS-~np~~~~~Ll~~q~~~~~~~ 182 (254)
T PF04826_consen 148 --------------------------------------------EKTKVQVLKVLVNLS-ENPDMTRELLSAQVLSSFLS 182 (254)
T ss_pred --------------------------------------------hHHHHHHHHHHHHhc-cCHHHHHHHHhccchhHHHH
Confidence 134677899999996 58888899999999999999
Q ss_pred HhhhC-CHHHHHHHHHHHHHHH
Q 040681 395 LVEKE-QGELQFNCLMTIMEIT 415 (594)
Q Consensus 395 LL~~~-~~~v~~~A~~aL~nL~ 415 (594)
|+.+. +.++...+.....||.
T Consensus 183 Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 183 LFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HHccCCccHHHHHHHHHHHHHH
Confidence 99875 5778888999999996
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=7.7e-10 Score=121.68 Aligned_cols=309 Identities=16% Similarity=0.201 Sum_probs=233.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
...+...|++.++.+|..+++.|++++.+++.....+.+.+.++.++.+|.+++ ..+...|+.+|.+|+.++..-..++
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCCchhHHHHh
Confidence 344667889999999999999999999988777888889999999999999998 9999999999999999888888898
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
..+.++.|..++...+..+|-++.+++.+++..+++....+.+.|.++.++..|.++ |.
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d----Di----------------- 216 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD----DI----------------- 216 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc----cH-----------------
Confidence 999999999999988888999999999999999999999999999999999988764 21
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
-++.+++..|..|+. .+...+.+.+.|+++.|..++.
T Consensus 217 ------------------------------------------Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 217 ------------------------------------------LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHh
Confidence 247788999999987 6777999999999999999997
Q ss_pred hCCHHH-----HH-HHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 398 KEQGEL-----QF-NCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 398 ~~~~~v-----~~-~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
..+.+. -. .......+++.. ....+.. ..+.+++.|...+.+.+ +..+..|.-++|.++.+..
T Consensus 254 ~~~~dp~~~~~~l~g~~~f~g~la~~--~~~~v~~--------~~p~~~~~l~~~~~s~d-~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 254 DSEEDPRLSSLLLPGRMKFFGNLARV--SPQEVLE--------LYPAFLERLFSMLESQD-PTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred ccccCCcccchhhhhHHHHHHHHHhc--ChHHHHH--------HHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHhCCHH
Confidence 543322 11 122344444422 2222222 13557778888887766 8899999999999997665
Q ss_pred hhhh----------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhh----HHHHH---HcCChH-HHHHhccC
Q 040681 472 ARET----------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEH----SKAII---EFNAVP-PLMRLLRG 533 (594)
Q Consensus 472 ~~~~----------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~----~~~i~---~~g~i~-~Lv~lL~~ 533 (594)
..+. .++..+-....++..+++..+..+|.++...++.-+.+. .+.+. ..+... .++.+++.
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 4322 234444445577888999999999999943222101121 22222 223333 56677776
Q ss_pred C-chHhHhHH
Q 040681 534 N-DRTQLHGL 542 (594)
Q Consensus 534 ~-~~vq~~Al 542 (594)
+ +++|.+|+
T Consensus 403 PF~elr~a~~ 412 (503)
T PF10508_consen 403 PFPELRCAAY 412 (503)
T ss_pred CchHHHHHHH
Confidence 6 34888777
No 22
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.32 E-value=6e-10 Score=130.89 Aligned_cols=236 Identities=19% Similarity=0.178 Sum_probs=146.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..|+..|.+.++.+|..|+..|..+.. .+.++.|+++|++++ +.++..|+.+|..+....
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-------
Confidence 4457778888999999999999987642 356888999998887 999999999998875421
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
...+.|...|++.++.||..++.+|..+...+ ...|+..|.+..
T Consensus 684 --~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d---------------------- 727 (897)
T PRK13800 684 --PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPD---------------------- 727 (897)
T ss_pred --CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCC----------------------
Confidence 12357778888888999999988888764211 234556664441
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..++..|+.+|..+ +. .+.|..++.
T Consensus 728 -----------------------------------------~~VR~~Av~aL~~~--~~------------~~~l~~~l~ 752 (897)
T PRK13800 728 -----------------------------------------HRVRIEAVRALVSV--DD------------VESVAGAAT 752 (897)
T ss_pred -----------------------------------------HHHHHHHHHHHhcc--cC------------cHHHHHHhc
Confidence 02344455555543 11 123445566
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~ 477 (594)
+++.+++..++.+|..+. .... ..++.|+.++++.+ +.++..|+.+|+++.. ....
T Consensus 753 D~~~~VR~~aa~aL~~~~---~~~~---------------~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g~-----~~~~ 808 (897)
T PRK13800 753 DENREVRIAVAKGLATLG---AGGA---------------PAGDAVRALTGDPD-PLVRAAALAALAELGC-----PPDD 808 (897)
T ss_pred CCCHHHHHHHHHHHHHhc---cccc---------------hhHHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----cchh
Confidence 666666666666665442 1110 02344555555444 6666666666666642 1123
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++.++..|.+.++.|+..|+.+|..+.. ...++.|+.+|...+. |++.|+
T Consensus 809 ~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 809 VAAATAALRASAWQVRQGAARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHH
Confidence 3556666666666666666666666533 1245666666666555 666554
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=1.2e-10 Score=132.06 Aligned_cols=304 Identities=16% Similarity=0.177 Sum_probs=221.6
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHh----------hccC------CCHHHHH-
Q 040681 158 VWSYIAAIQM---GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKL----------LKET------ASSEAQS- 217 (594)
Q Consensus 158 i~~lv~~L~~---~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~L----------L~~~------~~~~v~e- 217 (594)
+.-|+.+|+- ++.+.+..|-.+|.|+...+++-+..=.+.-+++.|=++ |... .+.+-+.
T Consensus 237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lc 316 (2195)
T KOG2122|consen 237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLC 316 (2195)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhH
Confidence 3346777764 356788889999999998777665544444444444321 2221 1234444
Q ss_pred HHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcC-----------C-CHHHHHHHHHHHHHHhhcCHHhHHHHHH-cCCh
Q 040681 218 AAATALYNIANDQERVRVIVSELGVPTIVNVLSD-----------S-IMKVQIQVASLVARMAEHDALAQDDFAR-ENVI 284 (594)
Q Consensus 218 ~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~-----------~-~~~v~~~aa~aL~~La~~~~~~~~~i~~-~g~i 284 (594)
.|+.+|..++.|+++|..+.+.|++..+..+|.- + .-.+|..+..+|.||...+..++..++. -|++
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 7888999999999999999999999999887732 1 3468999999999999887777766654 5789
Q ss_pred hhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHH
Q 040681 285 RPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIA 364 (594)
Q Consensus 285 ~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~ 364 (594)
+.+|..|.+.. +++...
T Consensus 397 eavVAQL~s~p---------------------------------------------------------------eeL~QV 413 (2195)
T KOG2122|consen 397 EAVVAQLISAP---------------------------------------------------------------EELLQV 413 (2195)
T ss_pred HHHHHHHhcCh---------------------------------------------------------------HHHHHH
Confidence 99999887652 123444
Q ss_pred HHHHHHHhc-cCChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHH
Q 040681 365 CAEALWMLA-RGSVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQ 442 (594)
Q Consensus 365 a~~aL~~L~-~~~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~ 442 (594)
.+.+|+||+ +.+...++.+-+.|-+..|+... +...+......+.||+||++=+..|. . .|.. +.+.+..
T Consensus 414 ~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK---A-~iCa----VDGALaF 485 (2195)
T KOG2122|consen 414 YASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK---A-EICA----VDGALAF 485 (2195)
T ss_pred HHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc---h-hhhc----ccchHHH
Confidence 578899987 33344466777889998888774 55555666778999999985444442 3 3443 2346677
Q ss_pred HHHHHhcCC---ChhhHHHHHHHHHHhhcCChhhh--------hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccc
Q 040681 443 LLRVINDLD---SPTLQIPAIKSIGSLARTFPARE--------TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLC 511 (594)
Q Consensus 443 Ll~lL~s~~---~~~v~~~a~~aL~~La~~~~~~~--------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~ 511 (594)
|+..|.... ...+.+.+-++|+|.+.....++ ...+..|++.|++.+..+..++|.+|+||.. .+
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA-R~--- 561 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RS--- 561 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc-CC---
Confidence 777776442 25678899999999886433222 2678999999999999999999999999988 55
Q ss_pred hhhHHHHHHcCChHHHHHhccCCch
Q 040681 512 TEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 512 ~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
++.++.+.+.|+|+.|..|+++.+.
T Consensus 562 p~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 562 PEDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred HHHHHHHHhcccHHHHHHHHhhhhh
Confidence 5889999999999999999998765
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.28 E-value=5.5e-09 Score=114.99 Aligned_cols=299 Identities=18% Similarity=0.228 Sum_probs=219.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH-HHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER-VRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~-~~~iv~~ 239 (594)
++..|++.+.+....+...|..+...- ....+ ..+..+.|...|.+++ +.++..+++.|++++.+.+. ...+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 566777777777777777787776542 22222 4577888999999998 99999999999999986665 5666689
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+.++.++.+|.+++..+...|+.+|.+|+.+.+ ....+...+.+..|..++...+ +
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~---~-------------------- 174 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSS---D-------------------- 174 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccC---H--------------------
Confidence 999999999999999999999999999998764 4445657777888888876631 1
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
.++..+..++.+++..+++....+.+.|.++.+++.|.++
T Consensus 175 ----------------------------------------~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d 214 (503)
T PF10508_consen 175 ----------------------------------------IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD 214 (503)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc
Confidence 1244467778889888889888999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCCh----hhHHHHH-HHHHHhhcCChhhh
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSP----TLQIPAI-KSIGSLARTFPARE 474 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~----~v~~~a~-~aL~~La~~~~~~~ 474 (594)
|.-+|.+++..|..|+ + .+.-.+ |..+.| +++.|..++.....+ .+..+.. +..++++...+..-
T Consensus 215 DiLvqlnalell~~La---~-~~~g~~--yL~~~g----i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 215 DILVQLNALELLSELA---E-TPHGLQ--YLEQQG----IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred cHHHHHHHHHHHHHHH---c-ChhHHH--HHHhCC----HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 8889999999999887 3 333334 344443 888888888765432 2344444 88999997543322
Q ss_pred h----ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH-HHc-CChHHHHHh----ccCCch-HhHhHH
Q 040681 475 T----RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI-IEF-NAVPPLMRL----LRGNDR-TQLHGL 542 (594)
Q Consensus 475 ~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i-~~~-g~i~~Lv~l----L~~~~~-vq~~Al 542 (594)
. .++..|.+++.+.++..+.-|..+++.+++ +.+....+ ... +.+++.++. ...+.. +|..++
T Consensus 285 ~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-----t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 285 LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-----TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-----CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 345566666788999999999999999977 35666666 333 244444443 334443 666655
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=1.1e-10 Score=102.28 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=93.7
Q ss_pred HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 193 IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 193 ~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.+++.|+|+.|+++|++++ ..+++.++++|++++.+ ++.+..+++.|++|.++++|.+++++++..++|+|++|+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3678999999999999998 99999999999999986 788999999999999999999999999999999999999988
Q ss_pred HHhHHHHHHcCChhhHHHhhhcC
Q 040681 272 ALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 272 ~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+..+..+.+.|+++.|++++..+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC
Confidence 77888888999999999999765
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.26 E-value=1.1e-10 Score=102.47 Aligned_cols=111 Identities=29% Similarity=0.418 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-hHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ-ERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~~~~~i 236 (594)
+..++..|+.++...+..|+++|.+++.+++.++..+++.|++|.|+++|.+++ +.++..++++|+||+.+. ..+..+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-HHHHHHHHHHHHHHccCcHHHHHHH
Confidence 455778889999999999999999999998999999999999999999999988 999999999999999865 567778
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
++.|+++.|+++|.+++.++++.++++|.+|++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999999999974
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=4.5e-09 Score=123.60 Aligned_cols=237 Identities=18% Similarity=0.169 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..|+..|..++..+|..|+.+|..+...- ...+.|...|++++ +.++..|+.+|+.+..
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~--------- 713 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPD-PVVRAAALDVLRALRA--------- 713 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCC-HHHHHHHHHHHHhhcc---------
Confidence 344777888889999999999998774321 22467888999887 9999999999998753
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+....|++.|++.++.||..|+.+|..+- . .+.|..++.++.
T Consensus 714 --~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--~------------~~~l~~~l~D~~---------------------- 755 (897)
T PRK13800 714 --GDAALFAAALGDPDHRVRIEAVRALVSVD--D------------VESVAGAATDEN---------------------- 755 (897)
T ss_pred --CCHHHHHHHhcCCCHHHHHHHHHHHhccc--C------------cHHHHHHhcCCC----------------------
Confidence 22456788999999999999999998762 1 234555554431
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..++..++.+|..+..... ..++.|..++.
T Consensus 756 -----------------------------------------~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~ 785 (897)
T PRK13800 756 -----------------------------------------REVRIAVAKGLATLGAGGA---------PAGDAVRALTG 785 (897)
T ss_pred -----------------------------------------HHHHHHHHHHHHHhccccc---------hhHHHHHHHhc
Confidence 1357788999998843222 24788999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~ 477 (594)
++++.++..|+.+|.++. . .+ .++..++..|.+.+ +.|+..|+.+|+.+. ....
T Consensus 786 D~d~~VR~aA~~aLg~~g---~-~~---------------~~~~~l~~aL~d~d-~~VR~~Aa~aL~~l~------~~~a 839 (897)
T PRK13800 786 DPDPLVRAAALAALAELG---C-PP---------------DDVAAATAALRASA-WQVRQGAARALAGAA------ADVA 839 (897)
T ss_pred CCCHHHHHHHHHHHHhcC---C-cc---------------hhHHHHHHHhcCCC-hHHHHHHHHHHHhcc------ccch
Confidence 999999999999997653 1 11 13345667776654 899999999999886 2356
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++.|+.+|++.++.||++|+++|..+.. + ....+.|.++|...+. |+..|.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~~~--~------------~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRWPG--D------------PAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCC--C------------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 8999999999999999999999999732 2 1246788888988887 887764
No 28
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.10 E-value=3.4e-09 Score=108.19 Aligned_cols=338 Identities=14% Similarity=0.094 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC--CCHHHHHHHHHHHHHhhCC-hhH-HHHHHhcCCHHHHH
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET--ASSEAQSAAATALYNIAND-QER-VRVIVSELGVPTIV 246 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~-~~~-~~~iv~~g~i~~Lv 246 (594)
+.-.-+..-|.|...+++.++..+++.|.++.|..++.-+ + .+..+......+||... .+. .....+......++
T Consensus 151 ~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qN-aa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~ 229 (604)
T KOG4500|consen 151 EYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQN-AALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLL 229 (604)
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhccccc-HHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHH
Confidence 3344455678899999999999999999999999988654 4 66777777777777763 333 45555677788889
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC-Cc--CCCccCccchhhHHHHHHHhhhhccc
Q 040681 247 NVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE-TF--VDDPRANSGKQSIHTIVQINKEMEKN 322 (594)
Q Consensus 247 ~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~--~~~~~~v~~~~si~~l~l~~~~~~~~ 322 (594)
++|.+. .+++.+.+..+|...+.++ ..+-.+++.|.+..++++++.- +. ..+..+....-+-+.+ +-. .+++
T Consensus 230 ~ll~~~v~~d~~eM~feila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~v-lll--tGDe 305 (604)
T KOG4500|consen 230 QLLPSMVREDIDEMIFEILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDV-LLL--TGDE 305 (604)
T ss_pred HHHHHhhccchhhHHHHHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhh-hhh--cCch
Confidence 999877 8899999999999999976 6888899999999999998762 11 1110000000000000 000 1110
Q ss_pred c--cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh--
Q 040681 323 S--FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-- 398 (594)
Q Consensus 323 ~--~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-- 398 (594)
. +-+.+. .++ +.-+.+-|++...+...+.-+++|+++ ++++|..+++.|.+..|+.+|..
T Consensus 306 SMq~L~~~p--~~l-------------~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 306 SMQKLHADP--QFL-------------DFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred HHHHHhcCc--HHH-------------HHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 000000 000 001111122224567888999999986 68889999999999999999964
Q ss_pred ---CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh--h
Q 040681 399 ---EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA--R 473 (594)
Q Consensus 399 ---~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~--~ 473 (594)
++-++|..++.+|.|+. ++..| ++.|.+ . |+++.++..++.+. +.++..-.++++.+-...+. .
T Consensus 370 ~vdgnV~~qhA~lsALRnl~-IPv~n----ka~~~~-a----GvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~ 438 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLM-IPVSN----KAHFAP-A----GVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIAC 438 (604)
T ss_pred CCCccchhHHHHHHHHHhcc-ccCCc----hhhccc-c----chHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHH
Confidence 44578999999999985 44444 323442 2 37788888888777 77887788888877754441 1
Q ss_pred hh----ccHHHHHHhccCCCH-HHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 474 ET----RVIGPLVAHLSHRNQ-EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 474 ~~----~~i~~Lv~lL~~~~~-~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+. ..+..||.--++++. +|..|.-+.|.-+.. ..+ ..+-..++.+.|||++++.++....- +|.+|+
T Consensus 439 eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk-Hs~-~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEal 511 (604)
T KOG4500|consen 439 ELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK-HSK-YKDVILTVPKSGGIKEKVSMFTKNHINMQNEAL 511 (604)
T ss_pred HHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH-hhH-hhhhHhhccccccHHHHHHHHHHhhHHHhHHHH
Confidence 22 335555555566555 499999999888876 211 13445667799999999999998777 888887
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.6e-08 Score=104.52 Aligned_cols=289 Identities=18% Similarity=0.179 Sum_probs=212.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
|--||..|...+.+.-.-....|..++.. ++|+..+.+.|.|..|++++.... ++++......|.|++.|...|..++
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHh
Confidence 44467777777767666677778888877 789999999999999999999988 9999999999999999999999999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
..|.+|.|+.+|.+... ..-|...|+.|+.++ ..+..|+...+|+.|.+.+-.++... +
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~-------------v----- 442 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSE-------------V----- 442 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCce-------------e-----
Confidence 99999999999987632 344777888888855 79999999999999999776653111 0
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
. ....+- --|||. +..+.+.+++..++..|+..--
T Consensus 443 ------------------------------------------d-l~lia~-ciNl~l-nkRNaQlvceGqgL~~LM~ra~ 477 (791)
T KOG1222|consen 443 ------------------------------------------D-LALIAL-CINLCL-NKRNAQLVCEGQGLDLLMERAI 477 (791)
T ss_pred ------------------------------------------c-HHHHHH-HHHHHh-ccccceEEecCcchHHHHHHHh
Confidence 0 110111 136753 5666778888888988887654
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh----
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR---- 473 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~---- 473 (594)
...+.+.. ..+.||+ .+....+. .|.. -|..|.++++..++...-..|+++++||.-+.-.-
T Consensus 478 k~~D~lLm---K~vRniS---qHeg~tqn-~Fid-------yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~il 543 (791)
T KOG1222|consen 478 KSRDLLLM---KVVRNIS---QHEGATQN-MFID-------YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKIL 543 (791)
T ss_pred cccchHHH---HHHHHhh---hccchHHH-HHHH-------HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 33333333 4455665 33333455 3442 56778888888777778889999999998643221
Q ss_pred -hhccHHHHHHhccC--CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC
Q 040681 474 -ETRVIGPLVAHLSH--RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533 (594)
Q Consensus 474 -~~~~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~ 533 (594)
....+|-+-..|.. ...+.+.+.+.+++.++++ ......+..+|.|+.|++||..
T Consensus 544 q~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-----~~cA~Lla~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 544 QSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-----LDCARLLAPAKLIDTLIELLQA 601 (791)
T ss_pred hhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-----hHHHHHhCccccHHHHHHHHHh
Confidence 12667877777754 4567888999999998882 2344555688999999999984
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.7e-08 Score=97.49 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=159.6
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHH
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPT 244 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~ 244 (594)
++.+++.+..|+..|..++.+ =.|...++..||..+|+.+|++++ ..+++.|+++|+..+. ++.....+++.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 456889999999999999865 788899999999999999999998 9999999999999998 7889999999999999
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccc
Q 040681 245 IVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNS 323 (594)
Q Consensus 245 Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~ 323 (594)
|+.+|.+. +..++.+|..+++.|-.+++..+..|...+|...|...+++++ ++
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~----------------------- 224 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TS----------------------- 224 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cc-----------------------
Confidence 99999866 7778999999999999999999999999999999999998863 11
Q ss_pred cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHH
Q 040681 324 FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGEL 403 (594)
Q Consensus 324 ~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v 403 (594)
..+++.++..+..+...+...+..+...+....+..+....+.++
T Consensus 225 -----------------------------------~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~ 269 (342)
T KOG2160|consen 225 -----------------------------------VKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEV 269 (342)
T ss_pred -----------------------------------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhh
Confidence 134566677788877666666776667777788888888888899
Q ss_pred HHHHHHHHHHHH
Q 040681 404 QFNCLMTIMEIT 415 (594)
Q Consensus 404 ~~~A~~aL~nL~ 415 (594)
.+.+..++..+.
T Consensus 270 ~e~~l~~~l~~l 281 (342)
T KOG2160|consen 270 NEAALTALLSLL 281 (342)
T ss_pred hHHHHHHHHHHH
Confidence 998888876543
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.87 E-value=6e-07 Score=95.22 Aligned_cols=278 Identities=19% Similarity=0.174 Sum_probs=189.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
++..|+.+|.-....|+..|..+..............-.+..|...|+++++...+.-++.+|..|...++.|..+.+.+
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 45577778888888999998888764333211111111234556666665447888889999999999999999999999
Q ss_pred CHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 241 GVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 241 ~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
++++|+.+|+.. +..++-.+.-+++-|+-+ +.....+...+.|+.|+++++...
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~----------------------- 241 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKEST----------------------- 241 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhh-----------------------
Confidence 999999999864 567888999999999874 456667777889999999986541
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC------hhhHHHHHhhCcHHHH
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS------VANSRRISETKGLLCL 392 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~------~~~~~~i~e~g~l~~L 392 (594)
|.++.+.+..+|+|+...+ ......+++.|.++.+
T Consensus 242 ---------------------------------------KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l 282 (429)
T cd00256 242 ---------------------------------------KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTL 282 (429)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHH
Confidence 2355677888899986422 2234556666666655
Q ss_pred HHHhhh--CCHHHHHHHHHH--------HHHHHHHhcCCHHHHHH-------------------hhhcCChhhHHHHHHH
Q 040681 393 AKLVEK--EQGELQFNCLMT--------IMEITAAAESNADLRRA-------------------AFKTNSPAAKAVVDQL 443 (594)
Q Consensus 393 ~~LL~~--~~~~v~~~A~~a--------L~nL~~~~~~~~~~r~~-------------------~~~~~~~~~~~~v~~L 443 (594)
-.|... +|+++... ... +..+++..+.-.++... -|..+. -.++..|
T Consensus 283 ~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~---~~llk~L 358 (429)
T cd00256 283 QSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN---YELLKIL 358 (429)
T ss_pred HHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc---hHHHHHH
Confidence 444433 34444331 111 12222221111111110 022222 3578899
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 444 LRVINDLDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 444 l~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++|..++++.+..-||-=||.+++..|... .|+=..+.++|.+.+++|+.+|..++.++..
T Consensus 359 ~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 359 IHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999766668888999999999998765432 2777888999999999999999999998854
No 32
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-06 Score=88.28 Aligned_cols=142 Identities=14% Similarity=0.199 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 212 SSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 212 ~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
+.+-++.|..-|-.++.+-++-..++..||..+++..|++++..+|+.|+|+|+..++++|.+|..+.+.|+.+.|+..|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 37888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHH
Q 040681 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 292 ~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
.+..+. ..+..|..|+..
T Consensus 176 s~~~~~--------------------------------------------------------------~~r~kaL~Aiss 193 (342)
T KOG2160|consen 176 SSDDPN--------------------------------------------------------------TVRTKALFAISS 193 (342)
T ss_pred ccCCCc--------------------------------------------------------------hHHHHHHHHHHH
Confidence 855210 125567888888
Q ss_pred hccCChhhHHHHHhhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHH
Q 040681 372 LARGSVANSRRISETKGLLCLAKLVEKE--QGELQFNCLMTIMEIT 415 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~ 415 (594)
+-+.++..+..+...++..+|...|+++ +..+|..++..+.++.
T Consensus 194 LIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 194 LIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 8788888888898899999999999985 4567788888898887
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-06 Score=96.26 Aligned_cols=238 Identities=13% Similarity=0.174 Sum_probs=174.0
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHh-hccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 158 VWSYIAAIQMG-QLSDRIEAAIELASL-AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~-~~~~~~~Aa~~L~~l-a~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
+-+|+.-|+.. |+..+.+|+..|..+ ..+|++.-..+--.-.||.|+.||+...+.+++..|++||.+|+. -|.+..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45577777765 888899999888754 445665555444556799999999987669999999999999998 788899
Q ss_pred HHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 235 VIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
.+|+.++||.|+.-|.. .-+++-|++..+|-.|+..++ .++.++|++-..+..|.+-+ +
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFS-------------i---- 308 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFS-------------I---- 308 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHH-------------H----
Confidence 99999999999986654 489999999999999998654 45668999998888886542 1
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETKGLLCL 392 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L 392 (594)
..++.|...-.|+|.. .++--..++| ++|.|
T Consensus 309 ----------------------------------------------~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL 340 (1051)
T KOG0168|consen 309 ----------------------------------------------HAQRVALAIAANCCKSIRSDEFHFVME--ALPLL 340 (1051)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHhcCCCccchHHHH--HHHHH
Confidence 1255566666676632 1222344444 79999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHhhcC
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS---PTLQIPAIKSIGSLART 469 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~---~~v~~~a~~aL~~La~~ 469 (594)
..+|...+....++++.+++.|+..+.+.++.-+. +. ..+++.....+|.-.+. ..+....++.|..+|..
T Consensus 341 ~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~-----s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 341 TPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LC-----SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-Hh-----chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 99999999999999999999998888777765552 22 23467766666654331 23344555666666644
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.72 E-value=4.4e-06 Score=93.00 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
.+..+.+.+...|+-+--++..+...+++.... .+..|.+=|.+++ +.++..|+++|++++ +++-.+.+
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~-~~~~~~~l---- 115 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPN-PYIRGLALRTLSNIR-TPEMAEPL---- 115 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSS-HHHHHHHHHHHHHH--SHHHHHHH----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCC-HHHHHHHHhhhhhhc-ccchhhHH----
Confidence 333444555555555555555555444432111 2444555555555 666666666666655 22222222
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
++.+.++|.++++.||..|+.++.++...+|
T Consensus 116 -~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 116 -IPDVIKLLSDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHHHHHhccCH
Confidence 4555666666666666666666666655443
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.6e-06 Score=85.06 Aligned_cols=274 Identities=16% Similarity=0.133 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS 252 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~ 252 (594)
-+.|..-|.|++.+ -..-..++....|..||+.|...+ .++.......|..|+-..+++..+.+.|.+..|+++....
T Consensus 280 Lrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 280 LRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 34566778899865 555566778889999999999988 8898899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCccc
Q 040681 253 IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRP 332 (594)
Q Consensus 253 ~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~ 332 (594)
.++++......|.||+..+ ..+..+++.|.+|.|+.+|.+++ +
T Consensus 358 h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~---~--------------------------------- 400 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDT---K--------------------------------- 400 (791)
T ss_pred CHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcc---c---------------------------------
Confidence 9999999999999999854 78888889999999999998773 1
Q ss_pred ccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCC-HHHHHHHHHHH
Q 040681 333 YLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ-GELQFNCLMTI 411 (594)
Q Consensus 333 L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~-~~v~~~A~~aL 411 (594)
+..|...|..++ .++..+..++-..+++.+.+.+-++. .++-..-...-
T Consensus 401 -----------------------------~~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~c 450 (791)
T KOG1222|consen 401 -----------------------------HGIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALC 450 (791)
T ss_pred -----------------------------chhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHH
Confidence 223566677885 46777777888889999998876554 34433322233
Q ss_pred HHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHH-HHhcCCChhhHHHHHHHHHHhhcCChhhhh---ccHHHHHHhccC
Q 040681 412 MEITAAAESNADLRRAAFKTNSPAAKAVVDQLLR-VINDLDSPTLQIPAIKSIGSLARTFPARET---RVIGPLVAHLSH 487 (594)
Q Consensus 412 ~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~-lL~s~~~~~v~~~a~~aL~~La~~~~~~~~---~~i~~Lv~lL~~ 487 (594)
.||| +...|. + ++... .+++.|++ .+++.+ . .-.+.++|++....+.+. ..++.|...++.
T Consensus 451 iNl~-lnkRNa---Q--lvceG----qgL~~LM~ra~k~~D-~----lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~n 515 (791)
T KOG1222|consen 451 INLC-LNKRNA---Q--LVCEG----QGLDLLMERAIKSRD-L----LLMKVVRNISQHEGATQNMFIDYVGDLAGIAKN 515 (791)
T ss_pred HHHH-hccccc---e--EEecC----cchHHHHHHHhcccc-h----HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhc
Confidence 4665 222332 2 33322 24455543 233222 1 245788999976665555 456778877754
Q ss_pred C-CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 488 R-NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 488 ~-~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
. +.....|....|+|+..++ -+..+-+.+..-||.+-+.|..+
T Consensus 516 d~~E~F~~EClGtlanL~v~d----ldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 516 DNSESFGLECLGTLANLKVTD----LDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred CchHHHHHHHHHHHhhcccCC----CCHHHHHhhccccHHHHHhhcCC
Confidence 4 4557788999999998743 36677777889999998888855
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.64 E-value=6.6e-06 Score=88.81 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=96.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIAN-DQERVRVIV 237 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~-~~~~~~~iv 237 (594)
+++..+.+.+++....|..-..|+..+++.++..+++.|+++.|..++...+ +.+.+.+.+.+++.+.. +.+....+.
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 3556777889999999999999999999999999999999999999987653 26666666667777665 677899999
Q ss_pred hcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCH
Q 040681 238 SELGVPTIVNVLSDSI-MKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~-~~v~~~aa~aL~~La~~~~ 272 (594)
+.+.++.|.++|.+.+ ..+++...+.+.++.+.++
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 9999999999999887 8899999999999988664
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.59 E-value=2.8e-05 Score=82.68 Aligned_cols=307 Identities=12% Similarity=0.135 Sum_probs=199.5
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhc-----CChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhH
Q 040681 160 SYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEE-----GGVPPLLKLLKETASSEAQSAAATALYNIAND-QER 232 (594)
Q Consensus 160 ~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-----g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~ 232 (594)
-++..|+ ....+.....+.-+..+..+++.....+.+. +...+++.+|..++ .-++..|+..|..+... ...
T Consensus 57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~ 135 (429)
T cd00256 57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAK 135 (429)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccc
Confidence 3444443 3455666666677777777766666666654 46788899998877 88999999999998752 221
Q ss_pred HHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
.......-....|...|+++ +...+..++.+|+.|...+ ..|..|.+.+++++|+.+|+.... .
T Consensus 136 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~---~----------- 200 (429)
T cd00256 136 MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATL---G----------- 200 (429)
T ss_pred cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccc---c-----------
Confidence 11111111234555666655 5778888899999998855 789999999999999999976420 0
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
.+++-.++-++|-|+- +++....+...+.++.
T Consensus 201 -----------------------------------------------~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~ 232 (429)
T cd00256 201 -----------------------------------------------FQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQD 232 (429)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHhc-cHHHHHhhccccHHHH
Confidence 1456677889999964 5556667777899999
Q ss_pred HHHHhhhC-CHHHHHHHHHHHHHHHHHhcCC---HHHHHHhhhcCChhhHHHHHHHHHHHhcCC--ChhhHHHHHHH---
Q 040681 392 LAKLVEKE-QGELQFNCLMTIMEITAAAESN---ADLRRAAFKTNSPAAKAVVDQLLRVINDLD--SPTLQIPAIKS--- 462 (594)
Q Consensus 392 L~~LL~~~-~~~v~~~A~~aL~nL~~~~~~~---~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~--~~~v~~~a~~a--- 462 (594)
|+.+++.. .+.+.+-+..++.|+...+... ..... .++ .. .+..++..|.... ++++.+.--..
T Consensus 233 l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~-~mv-~~-----~l~~~l~~L~~rk~~DedL~edl~~L~e~ 305 (429)
T cd00256 233 LSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAAL-QMV-QC-----KVLKTLQSLEQRKYDDEDLTDDLKFLTEE 305 (429)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHH-HHH-Hc-----ChHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 99999754 4677778999999998433111 01111 011 11 2334444444321 23333221111
Q ss_pred ----HHHhhcCChh---------------h----------------hhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCC
Q 040681 463 ----IGSLARTFPA---------------R----------------ETRVIGPLVAHL-SHRNQEVATEAAIALQKFASP 506 (594)
Q Consensus 463 ----L~~La~~~~~---------------~----------------~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~ 506 (594)
+..++ +++. . ...++..|+++| .+.++.+..=||.=|+.++.
T Consensus 306 L~~~~k~lt-sfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr- 383 (429)
T cd00256 306 LKNSVQDLS-SFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR- 383 (429)
T ss_pred HHHHHHHcC-CHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH-
Confidence 11121 1110 0 114578999999 45677777788888999986
Q ss_pred CCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 507 ENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 507 ~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+++.+.-+-+-||=..+++|+.+.++ |+.+||
T Consensus 384 ---~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL 417 (429)
T cd00256 384 ---HYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417 (429)
T ss_pred ---HCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 245666666678888889999999888 999998
No 38
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.59 E-value=2.7e-06 Score=87.95 Aligned_cols=257 Identities=20% Similarity=0.252 Sum_probs=177.4
Q ss_pred HHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhh
Q 040681 192 KIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAE 269 (594)
Q Consensus 192 ~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~ 269 (594)
..|...|++..|++++..++ ...++.+|+..|-.+.. .++++.++.-| +..++.+-+.. .++.+..++.+|.+|..
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45666799999999999986 13458889998887644 46788888766 55565555544 88999999999999999
Q ss_pred cCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccc
Q 040681 270 HDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKD 349 (594)
Q Consensus 270 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~ 349 (594)
++++...-++..|++...+--++...
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~------------------------------------------------------ 277 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTD------------------------------------------------------ 277 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCC------------------------------------------------------
Confidence 97776666667888887766654431
Q ss_pred cccCChHHHHHHHHHHHHHHHHhc-cCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 350 RENEKPEVKIKLKIACAEALWMLA-RGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 350 ~~~~dp~~k~~l~~~a~~aL~~L~-~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
| .+.+.|+-||.|++ .+.-++++.|++..+-+.|.-|-.+.++-.+..||.+++-|+.. .++-+.
T Consensus 278 -----P----~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~----KE~E~~- 343 (832)
T KOG3678|consen 278 -----P----ALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN----KEVERE- 343 (832)
T ss_pred -----H----HHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh----hhhhHH-
Confidence 1 24567888999865 34577899999999999999988888888899999999877633 333331
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-h---hccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-E---TRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~---~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+..++ ..++|+.++..++ + +..+++.... + ..-++.|+.+|++..-+.+.-++.-++-=+
T Consensus 344 -VrkS~-TlaLVEPlva~~D----P----------~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EA 407 (832)
T KOG3678|consen 344 -VRKSG-TLALVEPLVASLD----P----------GRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEA 407 (832)
T ss_pred -Hhhcc-chhhhhhhhhccC----c----------chhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHH
Confidence 22233 3457777776543 1 1122222111 1 145889999999887777777776666544
Q ss_pred CCCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 505 SPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
..... ....+-+-+-|+|..|-++..+.+.
T Consensus 408 aIKs~--Q~K~kVFseIGAIQaLKevaSS~d~ 437 (832)
T KOG3678|consen 408 AIKSL--QGKTKVFSEIGAIQALKEVASSPDE 437 (832)
T ss_pred HHHHh--ccchhHHHHHHHHHHHHHHhcCchH
Confidence 32210 1122345688999999999888776
No 39
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.58 E-value=3.4e-07 Score=79.79 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=111.9
Q ss_pred CcchHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh
Q 040681 152 DPMLSWVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 152 ~~i~~~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~ 230 (594)
-+.+.++..||..-+ ..+.+.|.+-...|.|.+.+ |.|+..+.+.+++..++.-|...+ ..+.+.+...|+|+|.|+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d~ 89 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLDK 89 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccCh
Confidence 345567777777554 56889999999999999988 999999999999999999999998 999999999999999999
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 040681 231 ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 231 ~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~ 279 (594)
.++..|.+++++|.++..|.+++..+...++.++..|+......++.+.
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 9999999999999999999999999999999999999876545566554
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.54 E-value=2e-05 Score=87.63 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=177.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~i 236 (594)
+-.+..-|.+.++..+..|+.+|.+++. ++.... .++.+.++|.+++ +.++..|+.++..+.. +++....
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~~- 151 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVED- 151 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHHH-
Confidence 4445567788999999999999999873 444333 4788899999988 9999999999999986 5543221
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh----cCCcCCCccCccchhhHHHH
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS----FETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~~v~~~~si~~l 312 (594)
. .++.+.++|.+.++.|+..|+.++..+ ..++.... ..++.++..|. ..+ + +..+
T Consensus 152 --~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~----~--------~~q~ 210 (526)
T PF01602_consen 152 --E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPD----P--------WLQI 210 (526)
T ss_dssp --G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCS----H--------HHHH
T ss_pred --H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccc----h--------HHHH
Confidence 2 488999999999999999999999999 32322111 23333333332 221 1 0000
Q ss_pred -HHHhhhh-ccccc-cc--CCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 313 -VQINKEM-EKNSF-VG--SKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 313 -~l~~~~~-~~~~~-~~--~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
++.-+.. ..... .. ...++++.+.+. .....+...++.++..+. .++. .-..
T Consensus 211 ~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------s~~~~V~~e~~~~i~~l~-~~~~-----~~~~ 267 (526)
T PF01602_consen 211 KILRLLRRYAPMEPEDADKNRIIEPLLNLLQ-----------------SSSPSVVYEAIRLIIKLS-PSPE-----LLQK 267 (526)
T ss_dssp HHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHS-SSHH-----HHHH
T ss_pred HHHHHHHhcccCChhhhhHHHHHHHHHHHhh-----------------ccccHHHHHHHHHHHHhh-cchH-----HHHh
Confidence 0000000 00000 00 011111111110 112355666777777664 2333 3345
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
+++.|..+|.+++++++..++.+|..|+ ..++ .. +. .....+..+...++..++..++..|.+++
T Consensus 268 ~~~~L~~lL~s~~~nvr~~~L~~L~~l~---~~~~---~~-v~--------~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 268 AINPLIKLLSSSDPNVRYIALDSLSQLA---QSNP---PA-VF--------NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHC---CHCH---HH-HG--------THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHhhcccchhehhHHHHHHHhh---cccc---hh-hh--------hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 7888888888888888888888887765 4342 11 11 11223445554555888888888888888
Q ss_pred cCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 468 RTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 468 ~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
... .-..+++.|.+.+ +..+.+++.+++.+|+.++.. . +... .-.+..+++++..+..
T Consensus 333 ~~~--n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~-~---~~~~-----~~~v~~l~~ll~~~~~ 391 (526)
T PF01602_consen 333 NES--NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEK-F---PPDA-----EWYVDTLLKLLEISGD 391 (526)
T ss_dssp -HH--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH-H---GSSH-----HHHHHHHHHHHHCTGG
T ss_pred ccc--chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhc-c---CchH-----HHHHHHHHHhhhhccc
Confidence 321 2235778888888 445778899999998888651 1 1111 1246778888885544
No 41
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=4e-05 Score=84.01 Aligned_cols=309 Identities=19% Similarity=0.188 Sum_probs=190.0
Q ss_pred CCcchHHHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-
Q 040681 151 NDPMLSWVWSYIA-AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN- 228 (594)
Q Consensus 151 ~~~i~~~i~~lv~-~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~- 228 (594)
.|.|...||.+|+ .+++.|-..|.-|+.+++++..+-+..+..-+-.+++|.++.++.++. -.++..++|+|+.++.
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADF 436 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhh
Confidence 5677778999988 788888888888999999999886666666667899999999999777 8899999999999997
Q ss_pred ChhHHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-------CChhhHHHhhhcCCcCCCc
Q 040681 229 DQERVR-VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE-------NVIRPLVTLLSFETFVDDP 300 (594)
Q Consensus 229 ~~~~~~-~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~-------g~i~~Lv~lL~~~~~~~~~ 300 (594)
.++... ...-.+.++.++.-|.+ .|.+-.+++|++.+|+..-+ +..... ...+.+++-|-..+.+.+-
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~---eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY---EAAVSNGQTDPATPFYEAIIGSLLKVTDRADG 512 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH---HhccCCCCCCccchhHHHHHHHHHhhcccccc
Confidence 343221 11123334444444433 78899999999999986422 111111 1122233322222211100
Q ss_pred cCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhH
Q 040681 301 RANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANS 380 (594)
Q Consensus 301 ~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~ 380 (594)
....++..|..||..+-...+.-+
T Consensus 513 --------------------------------------------------------nqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 513 --------------------------------------------------------NQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred --------------------------------------------------------chhhHHHHHHHHHHHHHHcCcHHH
Confidence 001356777788877654444333
Q ss_pred HHHHhhC---cHHHHHHHhh-----hCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 040681 381 RRISETK---GLLCLAKLVE-----KEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN 448 (594)
Q Consensus 381 ~~i~e~g---~l~~L~~LL~-----~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~ 448 (594)
--++..= .+..|-+.++ ..+ .++|..-|.+|..+.+.-.. +++. ....+...+++++.
T Consensus 537 y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~~~--------~~d~iM~lflri~~ 606 (859)
T KOG1241|consen 537 YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DIRE--------VSDQIMGLFLRIFE 606 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cchh--------HHHHHHHHHHHHHc
Confidence 2222110 1111112222 112 25666777777776543322 2333 13557788889998
Q ss_pred cCCChhhHHHHHHHHHHhhcC----ChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCC
Q 040681 449 DLDSPTLQIPAIKSIGSLART----FPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523 (594)
Q Consensus 449 s~~~~~v~~~a~~aL~~La~~----~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~ 523 (594)
+..+..+.+.|..+++.|+.. |......+.|.|..-| .-.+..|...|+..++.++.. -+..-...-.+.
T Consensus 607 s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-----L~~~i~py~d~~ 681 (859)
T KOG1241|consen 607 SKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-----LEDDILPYCDEL 681 (859)
T ss_pred CCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-----HHhhhhhHHHHH
Confidence 867677889998888888742 2222235678888888 455667888888888887541 111111224456
Q ss_pred hHHHHHhccCCc
Q 040681 524 VPPLMRLLRGND 535 (594)
Q Consensus 524 i~~Lv~lL~~~~ 535 (594)
...|++.|.++.
T Consensus 682 mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 682 MTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHccCcc
Confidence 788999998764
No 42
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.48 E-value=2.6e-05 Score=80.44 Aligned_cols=277 Identities=18% Similarity=0.182 Sum_probs=191.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC----hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG----VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~----I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..|..+|.-....+.+.+..++...... ++.+. ...|-.+++++++.+...-|+++|-.+...++.|..+
T Consensus 119 fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 119 FLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 566777777766666777776665532221 11111 1234445666544788888999999999999999999
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
+.+.|+..++..|.+. +-.++-...-+++-|+-+ |...+.+...+.|+.|+++++..+
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~------------------- 254 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKEST------------------- 254 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 9999999999999433 778899999999999975 455566677788999999986552
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh------hhHHHHHhhCc
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV------ANSRRISETKG 388 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~------~~~~~i~e~g~ 388 (594)
|.++-+.++.++.|+....+ +....++..++
T Consensus 255 -------------------------------------------KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v 291 (442)
T KOG2759|consen 255 -------------------------------------------KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV 291 (442)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc
Confidence 34556677888899875543 34456677777
Q ss_pred HHHHHHHhhh--CCHHHHH-------HHHHHHHHHHHHhcCCHHHHHHhhhcCChh-----------------hHHHHHH
Q 040681 389 LLCLAKLVEK--EQGELQF-------NCLMTIMEITAAAESNADLRRAAFKTNSPA-----------------AKAVVDQ 442 (594)
Q Consensus 389 l~~L~~LL~~--~~~~v~~-------~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~-----------------~~~~v~~ 442 (594)
.+++-.|.+. .|+++.. .--.-...|++..+...+++.. ...-+|. --.++..
T Consensus 292 ~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG-~L~WSP~Hk~e~FW~eNa~rlnennyellki 370 (442)
T KOG2759|consen 292 LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSG-RLEWSPVHKSEKFWRENADRLNENNYELLKI 370 (442)
T ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhC-CcCCCccccccchHHHhHHHHhhccHHHHHH
Confidence 6666665543 2343322 1122223344333333333321 1111222 2358899
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 443 LLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 443 Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
|+++|..++++.+..-|+-=||...+..|.. +.|+=..+.++|++.+++|+.+|..|+..+..
T Consensus 371 L~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 371 LIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999999888999999999999999876643 33888999999999999999999999988755
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00011 Score=80.80 Aligned_cols=284 Identities=17% Similarity=0.251 Sum_probs=203.5
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCChh--
Q 040681 156 SWVWSYIAAIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIANDQE-- 231 (594)
Q Consensus 156 ~~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~~~-- 231 (594)
..|..|+.++.+ --.+.|+.|+..|..+++. ||.. +...|.+||++.|+.. .++++...++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 357778888854 4578999999999999854 5544 4567899999999775 348999999999999876442
Q ss_pred -----HH----------HHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHc-CChhhHHHhhhc
Q 040681 232 -----RV----------RVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARE-NVIRPLVTLLSF 293 (594)
Q Consensus 232 -----~~----------~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~-g~i~~Lv~lL~~ 293 (594)
.+ +.++ ..+-|..|+..+...+--||..+...|.++-++ .++.|+++... -||..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 22 3344 577899999999999999999999999998765 56678877654 579999999965
Q ss_pred CCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhc
Q 040681 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLA 373 (594)
Q Consensus 294 ~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~ 373 (594)
.. . .++-.+.-.|..|.
T Consensus 178 sr----E-----------------------------------------------------------~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 178 SR----E-----------------------------------------------------------PIRNEAILLLSELV 194 (970)
T ss_pred hh----h-----------------------------------------------------------hhchhHHHHHHHHH
Confidence 41 0 11334556677888
Q ss_pred cCChhhHHHHHhhCcHHHHHHHhhhCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 040681 374 RGSVANSRRISETKGLLCLAKLVEKEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND 449 (594)
Q Consensus 374 ~~~~~~~~~i~e~g~l~~L~~LL~~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s 449 (594)
++++.+++.++=+.++..|..+++.+. +-|...|+..|.||- ..|...+. .|...+ -++.|.++|.-
T Consensus 195 k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL---K~N~SNQ~-~FrE~~-----~i~rL~klL~~ 265 (970)
T KOG0946|consen 195 KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL---KNNISNQN-FFREGS-----YIPRLLKLLSV 265 (970)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---hhCcchhh-HHhccc-----cHHHHHhhcCc
Confidence 899999999999999999999997532 257788899998887 45555566 566544 67888877652
Q ss_pred C---C----ChhhH-----HHHHHHHHHhhcCChh------h-----hhccHHHHHHhccC--CCHHHHHHHHHHHHHhc
Q 040681 450 L---D----SPTLQ-----IPAIKSIGSLARTFPA------R-----ETRVIGPLVAHLSH--RNQEVATEAAIALQKFA 504 (594)
Q Consensus 450 ~---~----~~~v~-----~~a~~aL~~La~~~~~------~-----~~~~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~ 504 (594)
. + .+.-+ ..++.+++.|...+.. . +.+.+..|..++-+ -..+|+.++..++++.+
T Consensus 266 f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 266 FEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVV 345 (970)
T ss_pred ccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHH
Confidence 2 2 12211 3455555555542221 1 12667777777733 46789999999999998
Q ss_pred CCCCccchhhHHHHH
Q 040681 505 SPENFLCTEHSKAII 519 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~ 519 (594)
. +|+ .++..+.
T Consensus 346 R-gn~---~nQ~~F~ 356 (970)
T KOG0946|consen 346 R-GNA---RNQDEFA 356 (970)
T ss_pred H-hch---HHHHHHh
Confidence 8 553 5555554
No 44
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.38 E-value=6.2e-05 Score=80.29 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=138.5
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 161 YIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
++..|. .++.+++..|+..+... +++ .++..|++.|.+.+ +.++..++.+|+.+-. .
T Consensus 59 L~~aL~~d~~~ev~~~aa~al~~~--~~~---------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~----------~ 116 (410)
T TIGR02270 59 LVSALAEADEPGRVACAALALLAQ--EDA---------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG----------R 116 (410)
T ss_pred HHHHHhhCCChhHHHHHHHHHhcc--CCh---------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc----------h
Confidence 555663 45566666555555322 211 13778888887776 7788888888876554 3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+..+.|+.+|++.++.++..+..++...- ....+.|..+|++.+
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d------------------------ 160 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHED------------------------ 160 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCC------------------------
Confidence 45677788888778888877776665521 123456777765431
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
..++..|+++|+.+. ..+ +++.|...+.+.
T Consensus 161 ---------------------------------------~~Vra~A~raLG~l~--~~~---------a~~~L~~al~d~ 190 (410)
T TIGR02270 161 ---------------------------------------ALVRAAALRALGELP--RRL---------SESTLRLYLRDS 190 (410)
T ss_pred ---------------------------------------HHHHHHHHHHHHhhc--ccc---------chHHHHHHHcCC
Confidence 124666777777763 222 466677777777
Q ss_pred CHHHHHHHHHHHHHHHH----------Hhc-CCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 400 QGELQFNCLMTIMEITA----------AAE-SNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~----------~~~-~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++.|+..|++++..+.. ... +.+.-++.+.....+.....++.|..++++ +.++..++.++|.+-
T Consensus 191 ~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d---~~vr~~a~~AlG~lg- 266 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA---AATRREALRAVGLVG- 266 (410)
T ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC---hhhHHHHHHHHHHcC-
Confidence 77888777777754420 000 000000000000000122456667777653 458899999999876
Q ss_pred CChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 469 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
....++.|++.+++.. ++..|..++.+++.
T Consensus 267 -----~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 267 -----DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred -----CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 4578999999997654 89999999999865
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.37 E-value=4.8e-07 Score=63.63 Aligned_cols=41 Identities=51% Similarity=0.721 Sum_probs=38.4
Q ss_pred CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 187 NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 187 ~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
|+++++.+++.|+||+|+++|++++ ++++++|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPD-PEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSS-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 4789999999999999999999888 9999999999999974
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.37 E-value=7.1e-06 Score=85.08 Aligned_cols=183 Identities=21% Similarity=0.222 Sum_probs=134.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC---CHHHHHHHHHHHHHhhCChhHHHH
Q 040681 159 WSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA---SSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 159 ~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~---~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
..++..+..+|.-.+..|+..|..++...+....... .+.++.+++.|++.. +.+.+.-++.+|.+|...++.|..
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~ 186 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV 186 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH
Confidence 3466678889999999999999999876555443322 566788888887631 156779999999999999999999
Q ss_pred HHhcCCHHHHHHhh------cCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 236 IVSELGVPTIVNVL------SDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 236 iv~~g~i~~Lv~lL------~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
+.+.|+++.|..+| .+. +..++-.+.-++|-|+- +++....+.+.+.|+.|+++++...
T Consensus 187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~------------- 252 (312)
T PF03224_consen 187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSI------------- 252 (312)
T ss_dssp HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---------------
T ss_pred HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcc-------------
Confidence 99999999999999 222 67789999999999997 5678888888899999999986652
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh-hHHHHHhhC
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA-NSRRISETK 387 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~-~~~~i~e~g 387 (594)
|.++.+.+..+|+|+....++ +...|+..|
T Consensus 253 -------------------------------------------------KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~ 283 (312)
T PF03224_consen 253 -------------------------------------------------KEKVVRVSLAILRNLLSKAPKSNIELMVLCG 283 (312)
T ss_dssp -------------------------------------------------SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred -------------------------------------------------cchHHHHHHHHHHHHHhccHHHHHHHHHHcc
Confidence 235677889999999754433 788888888
Q ss_pred cHHHHHHHhhh--CCHHHHH
Q 040681 388 GLLCLAKLVEK--EQGELQF 405 (594)
Q Consensus 388 ~l~~L~~LL~~--~~~~v~~ 405 (594)
+++.+-.|.+. +|+++..
T Consensus 284 ~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 284 LLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HHHHHHHHHSS--SSHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHH
Confidence 88777776654 4566654
No 47
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.35 E-value=1.4e-05 Score=82.95 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=141.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh------cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE------EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~------~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
.++..+ +.+.+.....+..+.++..+++.....+.+ .....+|++++..++ .-++..|+..|..|......+
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCCcc
Confidence 455555 567888889999999999988877777766 235789999999888 999999999999998744433
Q ss_pred HHHHhcCCHHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLSDS----IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~----~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
..-...+.++.++..|.+. +.+++..++.+|.+|.. .+..|..|.+.|+++.|+.+|.........
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~--------- 209 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNS--------- 209 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----------------
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCC---------
Confidence 3322255678888888753 55678999999999997 568999999999999999999422100000
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcH
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGL 389 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l 389 (594)
...+++-.++-++|.|+ -+++....+...+.+
T Consensus 210 -----------------------------------------------~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i 241 (312)
T PF03224_consen 210 -----------------------------------------------SGIQLQYQALLCLWLLS-FEPEIAEELNKKYLI 241 (312)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHH
T ss_pred -----------------------------------------------CchhHHHHHHHHHHHHh-cCHHHHHHHhccchH
Confidence 01356788899999996 578889999999999
Q ss_pred HHHHHHhhh-CCHHHHHHHHHHHHHHH
Q 040681 390 LCLAKLVEK-EQGELQFNCLMTIMEIT 415 (594)
Q Consensus 390 ~~L~~LL~~-~~~~v~~~A~~aL~nL~ 415 (594)
+.|+.+++. ..+.+.+-+.+++.|+.
T Consensus 242 ~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 242 PLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 999999975 45778888999999997
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=98.35 E-value=0.0012 Score=75.56 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
+..+.+..+++.|.+.|+-.--+|.+.+..+++.... +|..|.+=+++++ +.++-.|+++|+++-.. +..+.
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~~-~i~e~- 140 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSS-PVVRALAVRTMMCIRVS-SVLEY- 140 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCcH-HHHHH-
Confidence 4445566667777777777777777777655543222 3566666677776 77777777777776441 12222
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
.++++.+.|.+.++-||..|+.++.++...+| +.+.+.|.++.|.++|.+.
T Consensus 141 ----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 141 ----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCC
Confidence 35566777777778888888888888766554 2333445666777766543
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.1e-05 Score=84.67 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=177.2
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHh-hC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 201 PPLLKLLKETASSEAQSAAATALYNI-AN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 201 ~~Lv~LL~~~~~~~v~e~A~~aL~~L-a~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
..|++=|+...++..|.+|+.=|+.+ +. +++.-.-+--.-.+|.|+.+|+.. +.+++-.|+++|.+||..-|..-..
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 34444444442278888888877754 43 555544333345799999999977 9999999999999999988888889
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
++++++||.|++-|..- ..+
T Consensus 250 vV~~~aIPvl~~kL~~I---------------eyi--------------------------------------------- 269 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTI---------------EYI--------------------------------------------- 269 (1051)
T ss_pred eecccchHHHHHhhhhh---------------hhh---------------------------------------------
Confidence 99999999999876332 001
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
.+-+.+..||-.+++.++ +.+..+|++-..+..|.--...+|..|+.+..|+|.--..+ .|. .+.
T Consensus 270 --DvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd------~f~----~v~ 334 (1051)
T KOG0168|consen 270 --DVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD------EFH----FVM 334 (1051)
T ss_pred --HHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cch----HHH
Confidence 345667888999976544 56788999999999998778889999999999998322111 122 133
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--------hhccHHHHHHhccCC----CHHHHHHHHHHHHHhcC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--------ETRVIGPLVAHLSHR----NQEVATEAAIALQKFAS 505 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--------~~~~i~~Lv~lL~~~----~~~v~~~Aa~aL~nl~~ 505 (594)
..++.|..+|..++ ....+.++.++..++..+... ..+.|....+||.-. +..+-.-....|..+++
T Consensus 335 ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS 413 (1051)
T KOG0168|consen 335 EALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSS 413 (1051)
T ss_pred HHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHcc
Confidence 47888999998887 888889999999888655321 126777777777322 22344455666777766
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
+. +.....+.+.+....|-.+|.
T Consensus 414 -~~---pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 414 -GS---PLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred -CC---hHHHHHHHHhhHHHHHHHHHh
Confidence 33 456666666666666666665
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=98.27 E-value=0.00067 Score=77.56 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-hccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASL-AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~l-a~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
+.++-..|++.+...|.+|++.+... +.+. ... ...+-.++++.+.+ .+++.-.--.|.+.+. +++..-.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHHH
Confidence 44566778888888899999876544 4443 221 34566778888887 8999888888888887 4433211
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
++..|.+=+.++++-+|..|.++|+++-. +..-+. .++++.+.|.+. +
T Consensus 106 -----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~----~---------------- 153 (746)
T PTZ00429 106 -----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADP----D---------------- 153 (746)
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCC----C----------------
Confidence 37788888899999999999999988843 222221 234444444332 1
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..|+-++.++...+++ .+.+.|.++.|..+
T Consensus 154 -------------------------------------------pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~L 187 (746)
T PTZ00429 154 -------------------------------------------PYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVEL 187 (746)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHH
Confidence 13577788888888655554 33466788999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~ 475 (594)
|.+.++.++.+|+.+|.+|. +.+++.-. . ....+..|+..|...+ +-.|...+..|....-.......
T Consensus 188 L~D~dp~Vv~nAl~aL~eI~---~~~~~~l~----l----~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~P~~~~e~~ 255 (746)
T PTZ00429 188 LNDNNPVVASNAAAIVCEVN---DYGSEKIE----S----SNEWVNRLVYHLPECN-EWGQLYILELLAAQRPSDKESAE 255 (746)
T ss_pred hcCCCccHHHHHHHHHHHHH---HhCchhhH----H----HHHHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCcHHHH
Confidence 99999999999999999887 33331111 0 1235566676665544 44455555555332211111123
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCchHhHhHH
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGL 542 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~vq~~Al 542 (594)
.++..+...|.+.++.|..+|+.++.++...-+ .+..+.+... ..++|+.|+.+...+|.-+|
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~---~~~~~~~~~r-l~~pLv~L~ss~~eiqyvaL 318 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS---QELIERCTVR-VNTALLTLSRRDAETQYIVC 318 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC---HHHHHHHHHH-HHHHHHHhhCCCccHHHHHH
Confidence 678888889999999999999999999864111 2322222211 23677777654333666555
No 51
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=1.7e-06 Score=60.76 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=38.5
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 229 ~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+++++..+++.|++|+|+++|++++.++++.|+|+|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 52
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.20 E-value=0.00026 Score=74.09 Aligned_cols=227 Identities=23% Similarity=0.326 Sum_probs=165.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..++..+.+.+...|..|+..++.+... -.+|+|..+|.+.+ +.++..|+.+|+.+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDED-PRVRDAAADALGELGD-------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--------
Confidence 344566777888899999999997766432 57899999999998 9999999999998865
Q ss_pred HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 237 VSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 237 v~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
..++++|+.+|. +++..++..++++|..+-. ..++.+|+..+....... . ..
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~-a-----------~~-- 156 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGS-A-----------AA-- 156 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhh-h-----------hh--
Confidence 346899999999 5799999999999999843 224888888887652100 0 00
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..+++. ..++..+..+|..+ +++. .++.+..+
T Consensus 157 -----------------------------------~~~~~~--~~~r~~a~~~l~~~--~~~~---------~~~~l~~~ 188 (335)
T COG1413 157 -----------------------------------ALDAAL--LDVRAAAAEALGEL--GDPE---------AIPLLIEL 188 (335)
T ss_pred -----------------------------------hccchH--HHHHHHHHHHHHHc--CChh---------hhHHHHHH
Confidence 000000 13466777888877 4554 68899999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~ 475 (594)
+...+..++..|+.+|..+. ..+. .+++.+...+...+ ..++..++.+|+.+- ..
T Consensus 189 l~~~~~~vr~~Aa~aL~~~~---~~~~---------------~~~~~l~~~~~~~~-~~vr~~~~~~l~~~~------~~ 243 (335)
T COG1413 189 LEDEDADVRRAAASALGQLG---SENV---------------EAADLLVKALSDES-LEVRKAALLALGEIG------DE 243 (335)
T ss_pred HhCchHHHHHHHHHHHHHhh---cchh---------------hHHHHHHHHhcCCC-HHHHHHHHHHhcccC------cc
Confidence 99988999999999997665 2221 14455565655444 888888888888875 34
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..+..++..+.+.+..++..+..++..+
T Consensus 244 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 271 (335)
T COG1413 244 EAVDALAKALEDEDVILALLAAAALGAL 271 (335)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHhccc
Confidence 5688888899888888888887777633
No 53
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0015 Score=75.22 Aligned_cols=329 Identities=18% Similarity=0.209 Sum_probs=194.6
Q ss_pred ccccCCcccCCcchHHHHHHH----HHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhc----cCCC
Q 040681 142 VLTLPPIASNDPMLSWVWSYI----AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLK----ETAS 212 (594)
Q Consensus 142 ~~~l~~ia~~~~i~~~i~~lv----~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~----~~~~ 212 (594)
..++|.+..+... ..+.++. +.+...+..+|..|++++...+..++.++.....- ..+|.++..|. .++
T Consensus 142 l~s~~~~~~~~~~-~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d- 219 (1075)
T KOG2171|consen 142 LSSLPETFGNTLQ-PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD- 219 (1075)
T ss_pred HHhhhhhhccccc-hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-
Confidence 4456655544332 1233333 34455555599999999999888766555555443 45777777654 445
Q ss_pred HHHHHHHHHHHHHhhC-ChhH-HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC--Chhh
Q 040681 213 SEAQSAAATALYNIAN-DQER-VRVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFAREN--VIRP 286 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~-~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g--~i~~ 286 (594)
.+.-..+..+|-.|+. .+.. +..+.+ .|..-..+.++. +..+|..|...|..++++-|...+.-...| .++.
T Consensus 220 ~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 220 DDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 5666677778887776 3333 444433 455666666665 788999999999999886443322222211 2333
Q ss_pred HHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHH
Q 040681 287 LVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACA 366 (594)
Q Consensus 287 Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~ 366 (594)
++..+...... +. |. +.++... -+.++| ...|.
T Consensus 298 ~l~~mte~~~D-~e--------w~--------~~d~~de------------------------d~~~~~------~~~A~ 330 (1075)
T KOG2171|consen 298 LLAMMTEEEDD-DE--------WS--------NEDDLDE------------------------DDEETP------YRAAE 330 (1075)
T ss_pred HHHhcCCcccc-hh--------hc--------ccccccc------------------------ccccCc------HHHHH
Confidence 33333222110 00 00 0000000 011222 34567
Q ss_pred HHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHH
Q 040681 367 EALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRV 446 (594)
Q Consensus 367 ~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~l 446 (594)
++|-.++.+=+..+ +-.-.++.+-.+|.+.+..-+..++++|+.++ ++..+.-.. . ...+++.++..
T Consensus 331 ~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~---EGc~~~m~~-~------l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 331 QALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIA---EGCSDVMIG-N------LPKILPIVLNG 397 (1075)
T ss_pred HHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---cccHHHHHH-H------HHHHHHHHHhh
Confidence 77777764322211 00113556666778888888999999997666 665544332 1 24578888888
Q ss_pred HhcCCChhhHHHHHHHHHHhhcCChhh-h----hccHHHHHHhccC-CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHH
Q 040681 447 INDLDSPTLQIPAIKSIGSLARTFPAR-E----TRVIGPLVAHLSH-RNQEVATEAAIALQKFASPENFLCTEHSKAIIE 520 (594)
Q Consensus 447 L~s~~~~~v~~~a~~aL~~La~~~~~~-~----~~~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~ 520 (594)
|++.. +.||-.|+.++|.++.++... + ..+++.|+..+++ .++.|+..|+.||-|+.. + .-+.+++
T Consensus 398 l~Dph-prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E-~------~~~~~l~ 469 (1075)
T KOG2171|consen 398 LNDPH-PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE-E------CDKSILE 469 (1075)
T ss_pred cCCCC-HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH-h------CcHHHHH
Confidence 87655 999999999999999776431 2 2677888888855 677999999999999976 2 2333332
Q ss_pred ---cCChHHHHHhcc-CCch-HhHhHH
Q 040681 521 ---FNAVPPLMRLLR-GNDR-TQLHGL 542 (594)
Q Consensus 521 ---~g~i~~Lv~lL~-~~~~-vq~~Al 542 (594)
.+...+++.+|. ++.+ +|..++
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 234443444444 5555 777655
No 54
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00015 Score=78.55 Aligned_cols=321 Identities=12% Similarity=0.098 Sum_probs=176.1
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-ChHHHHHhhccCCCHHHHHHHHHHHHHhhCC
Q 040681 151 NDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEG-GVPPLLKLLKETASSEAQSAAATALYNIAND 229 (594)
Q Consensus 151 ~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g-~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~ 229 (594)
+.|+...++.++...++.++..|..|+.++........ ...+...+ -+..|..+-.+.+ ++++.+.+.+|..|-..
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~-~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDED-PEVRKNVCRALVFLLEV 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHh
Confidence 56777889999999999999999999999977654322 22222222 3555666655566 99999999999998763
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 230 QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 230 ~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
...|-.=.=.+.++.+++.-.+.+.+|--.|+.....+|.. |-++..+.. -++.|+-+|-++-.-++.
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p--~l~kliPvLl~~M~Ysd~--------- 313 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQP--YLDKLIPVLLSGMVYSDD--------- 313 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHH--HHHHHHHHHHccCccccc---------
Confidence 22221111234567777777788999999999999999984 467777654 344444444333110110
Q ss_pred HHHHHHhhhhcccccc-cCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCc
Q 040681 310 HTIVQINKEMEKNSFV-GSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKG 388 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~-~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~ 388 (594)
.-+++.|-..+..... +.++- |-.. |.|+ ....+.+...++--...-+..+
T Consensus 314 D~~LL~~~eeD~~vpDreeDIk-PRfh------------ksk~---------------~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIK-PRFH------------KSKE---------------HGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred cHHHhcCccccccCCchhhhcc-chhh------------hchh---------------ccCccccccccccccccccccc
Confidence 0012221111111111 11111 1000 0000 0000000000000000000000
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
-++-.++..++.+|--|+.+- ++. +. ..+++.|-..|.+.+ +.+++.++-+||.+|.
T Consensus 366 ---------~~dWNLRkCSAAaLDVLanvf------~~e-lL------~~l~PlLk~~L~~~~-W~vrEagvLAlGAIAE 422 (885)
T KOG2023|consen 366 ---------FSDWNLRKCSAAALDVLANVF------GDE-LL------PILLPLLKEHLSSEE-WKVREAGVLALGAIAE 422 (885)
T ss_pred ---------cccccHhhccHHHHHHHHHhh------HHH-HH------HHHHHHHHHHcCcch-hhhhhhhHHHHHHHHH
Confidence 011257777777776665332 111 11 224455555555544 9999999999999994
Q ss_pred CChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhH-HHHHHcCChHHHHHhccCCc-hHhHhHH
Q 040681 469 TFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHS-KAIIEFNAVPPLMRLLRGND-RTQLHGL 542 (594)
Q Consensus 469 ~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~-~~i~~~g~i~~Lv~lL~~~~-~vq~~Al 542 (594)
..-.. -...||.|+++|+++.+-||.-.||+|+.++. ++..++. +.+.. ....|++.+-.++ .||.+|+
T Consensus 423 GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~---wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAc 497 (885)
T KOG2023|consen 423 GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK---WVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAAC 497 (885)
T ss_pred HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh---hHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHH
Confidence 21100 01357899999999999999999999999853 2212222 22211 2333333333444 4999887
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0018 Score=71.70 Aligned_cols=273 Identities=15% Similarity=0.192 Sum_probs=189.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHh-cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVE-EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~-~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
|.-++..+..-|-.+|..|..-|.++.+. ..+.+.++.. --||..|+.+|.+.. +.++-.+.-.|..|..+..+.+.
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~~IQK 202 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNSSIQK 202 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCchHHH
Confidence 33456666777888999999999887653 3566666664 478999999999988 88999999999999998777666
Q ss_pred HH-hcCCHHHHHHhhcCC---C-HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 236 IV-SELGVPTIVNVLSDS---I-MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 236 iv-~~g~i~~Lv~lL~~~---~-~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
++ =+++..-|..+++.. + .-|.+.|...|-||-.++..+|..|.+.+-|+.|.++|......+.. +
T Consensus 203 lVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~E--v------- 273 (970)
T KOG0946|consen 203 LVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGE--V------- 273 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcc--c-------
Confidence 66 578899999999753 2 35889999999999999888999999999999999999765332211 0
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc-CC-----hhhHHHHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR-GS-----VANSRRIS 384 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~-~~-----~~~~~~i~ 384 (594)
.++++.-... ...+..+++.+.. |+ ..+++.+.
T Consensus 274 ----------------------------------------~~W~~Qrv~N-v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ 312 (970)
T KOG0946|consen 274 ----------------------------------------FGWSTQRVQN-VIEALQIVRSLVSPGNTSSITHQNQKALV 312 (970)
T ss_pred ----------------------------------------ccccHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 0122111001 1123344444432 22 23456778
Q ss_pred hhCcHHHHHHHhhhCC--HHHHHHHHHHHHHHHHHhcCCHHHHHHhhh----cCCh-hhHHHHHHHHHHHhcCCChhhHH
Q 040681 385 ETKGLLCLAKLVEKEQ--GELQFNCLMTIMEITAAAESNADLRRAAFK----TNSP-AAKAVVDQLLRVINDLDSPTLQI 457 (594)
Q Consensus 385 e~g~l~~L~~LL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~----~~~~-~~~~~v~~Ll~lL~s~~~~~v~~ 457 (594)
..+++..|..++-++. .+++..+..++++..++... .+. .|. +..| ....++-.++.+..+..+...|.
T Consensus 313 ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~---nQ~-~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRc 388 (970)
T KOG0946|consen 313 SSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR---NQD-EFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRC 388 (970)
T ss_pred HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH---HHH-HHhhccCCCCCCCccchhHHHHHHHhccCCchHHH
Confidence 8899999999887663 47888888999888755443 334 233 3333 23445555666666666688899
Q ss_pred HHHHHHHHhhcCChhhhhccHHHHHHhc
Q 040681 458 PAIKSIGSLARTFPARETRVIGPLVAHL 485 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~~~~i~~Lv~lL 485 (594)
++..++.+.-......+..++..++..-
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 9999999887655555556666666655
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0007 Score=74.98 Aligned_cols=283 Identities=17% Similarity=0.173 Sum_probs=177.1
Q ss_pred ccCCcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHH
Q 040681 144 TLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATAL 223 (594)
Q Consensus 144 ~l~~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL 223 (594)
.+..|.+.|=++...++....|++.++-.|.+|+.|...+.+..|.....+ +++..++|.+.+ ..+...++..+
T Consensus 130 alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~-hGVL~~~l~l~ 203 (866)
T KOG1062|consen 130 ALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKH-HGVLIAGLHLI 203 (866)
T ss_pred HhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcC-CceeeeHHHHH
Confidence 355666666666677777778899999999999999988888777765554 677888898877 77777778888
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhH
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSD---------------SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~---------------~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~L 287 (594)
..++. +++.-..+-+ .++.||..|+. ++|-+|....++|+-|-+++++..+.+.+ .|
T Consensus 204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iL 276 (866)
T KOG1062|consen 204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----IL 276 (866)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Confidence 88876 5555444433 67788888753 27889999999999999988777776654 23
Q ss_pred HHhhhcCCcCCCccCccchh---hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHH
Q 040681 288 VTLLSFETFVDDPRANSGKQ---SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIA 364 (594)
Q Consensus 288 v~lL~~~~~~~~~~~v~~~~---si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~ 364 (594)
-+++.+. +-++++.+.- |++.+. ... . ...++..
T Consensus 277 aqvatnt---dsskN~GnAILYE~V~TI~---------------------~I~---------------~----~~~Lrvl 313 (866)
T KOG1062|consen 277 AQVATNT---DSSKNAGNAILYECVRTIM---------------------DIR---------------S----NSGLRVL 313 (866)
T ss_pred HHHHhcc---cccccchhHHHHHHHHHHH---------------------hcc---------------C----CchHHHH
Confidence 3333332 1122222211 233220 000 0 0135666
Q ss_pred HHHHHHHhccCChhhHHHHHhhCcHHHH------------------HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 365 CAEALWMLARGSVANSRRISETKGLLCL------------------AKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 365 a~~aL~~L~~~~~~~~~~i~e~g~l~~L------------------~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
|+.+|+.+-.+.+.|.+.+ ++..| +..|++.|..+|..|...+.-|+ +
T Consensus 314 ainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv----n------ 379 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV----N------ 379 (866)
T ss_pred HHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----c------
Confidence 7777777644444444433 23333 34445555666666665554443 1
Q ss_pred HhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 427 AAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 427 ~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
+.-+..+++.|+.+|.+.+ ++.+..++.-+..++..+.....=.|..+.+.|...-.-|...+...+..+
T Consensus 380 ------~~Nv~~mv~eLl~fL~~~d-~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 380 ------ESNVRVMVKELLEFLESSD-EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRL 449 (866)
T ss_pred ------cccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 1113448899999999885 999999999999999877654333444444444433333444444444333
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.93 E-value=0.00081 Score=71.87 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=100.2
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
..+++.|+..|....++++...++.++.. .++ ..++..|+..|.+.++.++..++.+|..+- +
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~----- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--G----- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--c-----
Confidence 35688899999654337777766655543 221 113888999999999999999999998762 2
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
..+.+.|+.+|.+. +.
T Consensus 116 ----~~a~~~L~~~L~~~----~p-------------------------------------------------------- 131 (410)
T TIGR02270 116 ----RQAEPWLEPLLAAS----EP-------------------------------------------------------- 131 (410)
T ss_pred ----hHHHHHHHHHhcCC----Ch--------------------------------------------------------
Confidence 23567788887554 11
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
.++..+..++... +. ...+.+..+|++.++.++..|+.+|..|. . .
T Consensus 132 ---~vR~aal~al~~r--~~----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~---~--~-------------- 177 (410)
T TIGR02270 132 ---PGRAIGLAALGAH--RH----------DPGPALEAALTHEDALVRAAALRALGELP---R--R-------------- 177 (410)
T ss_pred ---HHHHHHHHHHHhh--cc----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc---c--c--------------
Confidence 1244455555442 11 13678888899899999999999997663 1 0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
..++.|...+.+.+ +.|+..|+.+++.+-
T Consensus 178 -~a~~~L~~al~d~~-~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 -LSESTLRLYLRDSD-PEVRFAALEAGLLAG 206 (410)
T ss_pred -cchHHHHHHHcCCC-HHHHHHHHHHHHHcC
Confidence 03344555555444 777777777776553
No 58
>PF05536 Neurochondrin: Neurochondrin
Probab=97.93 E-value=0.0012 Score=73.26 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=162.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchh---HHHHHhcCChHHHHHhhccCC------CHHHHHHHHHHHHHhh
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRN---KKIIVEEGGVPPLLKLLKETA------SSEAQSAAATALYNIA 227 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~---~~~i~~~g~I~~Lv~LL~~~~------~~~v~e~A~~aL~~La 227 (594)
.+.+.+..|+..+.+.|..++.-+..+...++.. ++.|.+.=|...|-+||+++. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3556778899988888888999999999876643 345778877889999998832 2567778999999999
Q ss_pred CChhHH--HHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCcc
Q 040681 228 NDQERV--RVIVSELGVPTIVNVLSDSIM-KVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANS 304 (594)
Q Consensus 228 ~~~~~~--~~iv~~g~i~~Lv~lL~~~~~-~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~ 304 (594)
.+++.. ..++ +-||.|+.++.+.+. .+...+..+|..++. +++.+..+.+.|+++.|++.+.++. .
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~---~----- 154 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQS---F----- 154 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCc---c-----
Confidence 987753 4554 359999999988866 999999999999996 6689999999999999999987742 1
Q ss_pred chhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-----hh
Q 040681 305 GKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV-----AN 379 (594)
Q Consensus 305 ~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~-----~~ 379 (594)
....+..+|.++..... +.
T Consensus 155 --------------------------------------------------------~~E~Al~lL~~Lls~~~~~~~~~~ 178 (543)
T PF05536_consen 155 --------------------------------------------------------QMEIALNLLLNLLSRLGQKSWAED 178 (543)
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHhcchhhhhhh
Confidence 13344555555433211 00
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHH
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPA 459 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a 459 (594)
.+.+ ...++.+...+.......+...+..|..+-.-....+ .+. ..+......+..-+..+|++...+.-+.++
T Consensus 179 ~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~--~~~--~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 179 SQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP--LES--PPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred HHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc--ccc--CChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1111 1245566666666666666777777766642110000 010 111122345666677788877767777788
Q ss_pred HHHHHHhhc
Q 040681 460 IKSIGSLAR 468 (594)
Q Consensus 460 ~~aL~~La~ 468 (594)
+....+|..
T Consensus 253 l~Laa~Ll~ 261 (543)
T PF05536_consen 253 LNLAASLLD 261 (543)
T ss_pred HHHHHHHHH
Confidence 877777764
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.001 Score=73.68 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=184.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~ 239 (594)
+..-|++.+.-+.--|+.+|++++.. +..+ +..|-..++|+..+ +-++..|+-+...+-+ .++..+.+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~--Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f--- 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSP--EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF--- 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCH--HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh---
Confidence 34467788888888999999999864 3322 23455667888888 9999999888887776 67666655
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
++...++|.+.+..|.......+..||..+++.-.-+.+ .++-||..|+.-+....+.
T Consensus 181 --~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~ysp------------------ 238 (866)
T KOG1062|consen 181 --VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSP------------------ 238 (866)
T ss_pred --hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCC------------------
Confidence 567788898888889889999999999988888788877 7888888886532111100
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
.+.-.|+ .||- ++....+.|+-|..++++..+.|.+ .|.++....
T Consensus 239 ---eydv~gi-----------------------~dPF----LQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatnt 283 (866)
T KOG1062|consen 239 ---EYDVHGI-----------------------SDPF----LQIRILRLLRILGQNDADASDLMND-----ILAQVATNT 283 (866)
T ss_pred ---ccCccCC-----------------------CchH----HHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcc
Confidence 0001122 3332 4666788888887777765655543 445555432
Q ss_pred C------HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 400 Q------GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 400 ~------~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
+ .-+-+.|..+|+.|- .++.+|-. .++.|-++|.+.+ ..++--|+.+|..+....+..
T Consensus 284 dsskN~GnAILYE~V~TI~~I~----~~~~Lrvl-----------ainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIR----SNSGLRVL-----------AINILGKFLLNRD-NNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred cccccchhHHHHHHHHHHHhcc----CCchHHHH-----------HHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcHH
Confidence 2 246677888887663 45556553 6778888887666 888888888888888655544
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
-.+--..+++.|++.+..+++.|...+..++-
T Consensus 348 vqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 348 VQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 44556788999999999999999999988876
No 60
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.87 E-value=0.0012 Score=71.77 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHhhCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 213 SEAQSAAATALYNIAND-QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~-~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
......|+-.+.++++. ..-+.-.-...++.+||++|..|+..++..+.++|.|+.......|..|...|+|..|.+.+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 45555566666666663 22344455677899999999999999999999999999986546899999999999999998
Q ss_pred hcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHH
Q 040681 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 292 ~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
.+.. + .++..+.++|++
T Consensus 471 ~~~~---~------------------------------------------------------------n~r~~~~~~Lr~ 487 (678)
T KOG1293|consen 471 TDPD---F------------------------------------------------------------NSRANSLWVLRH 487 (678)
T ss_pred cCCC---c------------------------------------------------------------hHHHHHHHHHHH
Confidence 6652 1 125677899999
Q ss_pred hccCChhhHHHHHhhCcH-HHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 040681 372 LARGSVANSRRISETKGL-LCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL 450 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l-~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~ 450 (594)
+.-+.++..+.....+.- ..++.+.++++..||+.|...|.|+++.....- . |.... .+.+++.....++-.
T Consensus 488 l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~sv---d--fll~~--~~~~ld~i~l~lk~a 560 (678)
T KOG1293|consen 488 LMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSV---D--FLLEK--FKDVLDKIDLQLKIA 560 (678)
T ss_pred HHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHH---H--HHHHh--hhHHHHHHHHHHhhc
Confidence 865555544444433333 455566678889999999999999984433222 2 11111 122333333333322
Q ss_pred CChhhHHHHHHHHHHhhcCChhhhh----ccHHHHHHh---c-----cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 451 DSPTLQIPAIKSIGSLARTFPARET----RVIGPLVAH---L-----SHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 451 ~~~~v~~~a~~aL~~La~~~~~~~~----~~i~~Lv~l---L-----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
....+.+....-+.++....+..+. |..+.++.. + .+.......++.|.+.|+..++.. .+..+.+
T Consensus 561 ~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~--s~~dr~~ 638 (678)
T KOG1293|consen 561 IGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSS--SNFDRSN 638 (678)
T ss_pred cCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCC--cccchhh
Confidence 2233333333333333322221122 333333321 1 345667888999999999886553 3445555
Q ss_pred HH-cCChHHHH
Q 040681 519 IE-FNAVPPLM 528 (594)
Q Consensus 519 ~~-~g~i~~Lv 528 (594)
.- .++..+.+
T Consensus 639 ~~~n~i~e~~~ 649 (678)
T KOG1293|consen 639 LKLNCIWELNN 649 (678)
T ss_pred ccccceechhh
Confidence 43 33444333
No 61
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0031 Score=62.97 Aligned_cols=276 Identities=16% Similarity=0.146 Sum_probs=165.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
..+++.+|++.++.+|..|+..|..+... ..+.... +.-.++.|.+|++... + -+.|+++|.|++.++..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhHHHHHHH
Confidence 45688899999999999999998888755 2222221 2345788999998877 4 778999999999999999998
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH------cCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR------ENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
.+. .+..++..+.++....-.-.+..|.||+..+..+...... .|.++.....+..+.- .+
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n-~~----------- 146 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYN-AY----------- 146 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccc-cc-----------
Confidence 877 7777777777775566677888999999866444433322 1122222222221100 00
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.. ....+-.+.||++ .+.-++.+.+...++
T Consensus 147 ------------------------------------------------a~-f~ylA~vf~nls~-~~~gR~l~~~~k~~p 176 (353)
T KOG2973|consen 147 ------------------------------------------------AE-FHYLAPVFANLSQ-FEAGRKLLLEPKRFP 176 (353)
T ss_pred ------------------------------------------------cc-hhHHHHHHHHHhh-hhhhhhHhcchhhhh
Confidence 00 1223556677754 455577666665332
Q ss_pred --HHHHHhhhCCHHHH-HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 391 --CLAKLVEKEQGELQ-FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 391 --~L~~LL~~~~~~v~-~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+..+ .+.+..++ ...+++|.|+|.-+. .... ....+ -.+.+.++ .=||
T Consensus 177 ~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~----~h~~-lL~e~---~~lLp~iL-------------------lPla 228 (353)
T KOG2973|consen 177 DQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAK----LHEV-LLDES---INLLPAIL-------------------LPLA 228 (353)
T ss_pred Hhhhhcc-cccchhhhccchHHHHHhhhccch----hHHH-Hhcch---HHHHHHHH-------------------hhcC
Confidence 22222 23444554 367889999873322 2221 11110 11222222 2223
Q ss_pred cCChhhhh--ccHHHHHHhc-----cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 468 RTFPARET--RVIGPLVAHL-----SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 468 ~~~~~~~~--~~i~~Lv~lL-----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+..+-.+. .-+|.=+++| .+.++.+++.-..+|.-+++ ..+.+.++..-|+.++++-++.+.
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca------T~~GRe~lR~kgvYpilRElhk~e 297 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA------TRAGREVLRSKGVYPILRELHKWE 297 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh------hhHhHHHHHhcCchHHHHHHhcCC
Confidence 22111121 2233333777 35688999999999998877 245566666677888888888553
No 62
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0014 Score=70.03 Aligned_cols=310 Identities=15% Similarity=0.135 Sum_probs=178.4
Q ss_pred CCcchHHHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC
Q 040681 151 NDPMLSWVWSYIA-AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND 229 (594)
Q Consensus 151 ~~~i~~~i~~lv~-~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~ 229 (594)
.+.|...||.+|+ .+++++-.-|..|+.+++++..+-.+....-+=..++|.+..+..++. --++..++|+++.|+.+
T Consensus 360 gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 360 GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHH
Confidence 4556667888887 567777667777899999998764333333333578888888888776 88999999999999863
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHH--HcCChhhHHHhhhcCCcCCCccCcc
Q 040681 230 QERVRVIVSELGVPTIVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFA--RENVIRPLVTLLSFETFVDDPRANS 304 (594)
Q Consensus 230 ~~~~~~iv~~g~i~~Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~v~ 304 (594)
....|-.+|-+++.+.-+--| .|.+..++.|...||..+-++.-...- -..-.+.++.-|-.++.+..
T Consensus 439 --va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~----- 511 (858)
T COG5215 439 --VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL----- 511 (858)
T ss_pred --HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc-----
Confidence 222333466677777655444 788899999999999876432221100 01122333333222211000
Q ss_pred chhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHH
Q 040681 305 GKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRI 383 (594)
Q Consensus 305 ~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i 383 (594)
.|. .++..+..+|..|-.-. +.+...+
T Consensus 512 ---------------------------------------------Ne~-------n~R~s~fsaLgtli~~~~d~V~~~~ 539 (858)
T COG5215 512 ---------------------------------------------NES-------NLRVSLFSALGTLILICPDAVSDIL 539 (858)
T ss_pred ---------------------------------------------cch-------hHHHHHHHHHHHHHhhcchhHHHHH
Confidence 000 11233333333321111 1111111
Q ss_pred Hh---------hCcHHHHHHHhhhCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 040681 384 SE---------TKGLLCLAKLVEKEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL 450 (594)
Q Consensus 384 ~e---------~g~l~~L~~LL~~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~ 450 (594)
+. ...+..+-+.+..++ +++|.|-+..|..+.+- ..++++ +....+++.++++|.+.
T Consensus 540 a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~--~~~~ie--------~v~D~lm~Lf~r~les~ 609 (858)
T COG5215 540 AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT--RRRDIE--------DVEDQLMELFIRILEST 609 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh--cCCCcc--------cHHHHHHHHHHHHHhcc
Confidence 00 112333333333322 35666666666433211 111111 22334677788899888
Q ss_pred CChhhHHHHHHHHHHhhc----CChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHH
Q 040681 451 DSPTLQIPAIKSIGSLAR----TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPP 526 (594)
Q Consensus 451 ~~~~v~~~a~~aL~~La~----~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~ 526 (594)
++..+-.....++++|+. .|......++|.|.+.|...+..|.-.|+..++.++-. -+..-.+....-...
T Consensus 610 ~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant-----l~~df~~y~d~~ms~ 684 (858)
T COG5215 610 KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT-----LGTDFNIYADVLMSS 684 (858)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHH
Confidence 666777888889999986 33333447899999999888888999999998888641 111112222334567
Q ss_pred HHHhccCCc
Q 040681 527 LMRLLRGND 535 (594)
Q Consensus 527 Lv~lL~~~~ 535 (594)
|++.|.+..
T Consensus 685 LvQ~lss~~ 693 (858)
T COG5215 685 LVQCLSSEA 693 (858)
T ss_pred HHHHhcChh
Confidence 888888653
No 63
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.81 E-value=0.0019 Score=67.62 Aligned_cols=204 Identities=26% Similarity=0.336 Sum_probs=149.4
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
..++.+++++.+.+ ..++..+++.++.+.. .-+++.+..+|.+.++.+|..++.+|+++- ++
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence 57889999999987 9999999999888765 346999999999999999999999888873 22
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
..+++|+.++..+. +
T Consensus 105 ----~a~~~li~~l~~d~---~---------------------------------------------------------- 119 (335)
T COG1413 105 ----EAVPPLVELLENDE---N---------------------------------------------------------- 119 (335)
T ss_pred ----hHHHHHHHHHHcCC---c----------------------------------------------------------
Confidence 36889999987521 1
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCH------------HHHHHHHHHHHHHHHHhcCCHHHH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG------------ELQFNCLMTIMEITAAAESNADLR 425 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~------------~v~~~A~~aL~nL~~~~~~~~~~r 425 (594)
..++..++++|..+ ++.. ++..++..+.+... .++..+..++.++- +
T Consensus 120 -~~vR~~aa~aL~~~--~~~~---------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----~---- 178 (335)
T COG1413 120 -EGVRAAAARALGKL--GDER---------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----D---- 178 (335)
T ss_pred -HhHHHHHHHHHHhc--Cchh---------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----C----
Confidence 13467788888887 3333 47777777776542 24444555554331 1
Q ss_pred HHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 426 RAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 426 ~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..++.+...+.... ..++..|+.+|+.+.... ..+.+.++..+.+.+..++..++.+|+.+-.
T Consensus 179 -----------~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 179 -----------PEAIPLLIELLEDED-ADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred -----------hhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 224566666776555 789999999999998422 2567889999999999999999999998854
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
...+..++..+...+.
T Consensus 243 ---------------~~~~~~l~~~l~~~~~ 258 (335)
T COG1413 243 ---------------EEAVDALAKALEDEDV 258 (335)
T ss_pred ---------------chhHHHHHHHHhccch
Confidence 2345666676766655
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.78 E-value=0.00038 Score=61.07 Aligned_cols=95 Identities=14% Similarity=0.031 Sum_probs=83.9
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
.+..||.-.....+.+.+++...-|.|++.|+.+-..+.+..++..++.-|...+..+.+.+...|+|+|- ++.+...|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHH
Confidence 34556665555545999999999999999999999999999999999999999999999999999999998 67899999
Q ss_pred HHcCChhhHHHhhhcC
Q 040681 279 ARENVIRPLVTLLSFE 294 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~ 294 (594)
.++++++..+..+.++
T Consensus 96 ~ea~g~plii~~lssp 111 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSP 111 (173)
T ss_pred HHhcCCceEEeecCCC
Confidence 9999999988887665
No 65
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.002 Score=74.26 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=130.8
Q ss_pred hHHHHH----hhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHH
Q 040681 200 VPPLLK----LLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DAL 273 (594)
Q Consensus 200 I~~Lv~----LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~ 273 (594)
.|+++. +|.+.+ ..-+..+..||+.++. ..+.-.... ...++..+..|+++++.||-.|+.+++.|+.+ .|+
T Consensus 346 ~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 555544 567777 8899999999999987 444433333 34688888999999999999999999999875 455
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
.+....+ -.++.|+..+.+. ++
T Consensus 424 iqk~~~e-~l~~aL~~~ld~~---~~------------------------------------------------------ 445 (1075)
T KOG2171|consen 424 IQKKHHE-RLPPALIALLDST---QN------------------------------------------------------ 445 (1075)
T ss_pred HHHHHHH-hccHHHHHHhccc---Cc------------------------------------------------------
Confidence 5555533 3566777777544 11
Q ss_pred ChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH-HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcC
Q 040681 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL-CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTN 432 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~-~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~ 432 (594)
..++..|+.|+-|++...+...-.=.-.+.+. .|..|++++++.+|+.++.+|...+..++ . .|.
T Consensus 446 -----~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~------~-~F~-- 511 (1075)
T KOG2171|consen 446 -----VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ------E-KFI-- 511 (1075)
T ss_pred -----hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh------h-hhH--
Confidence 13467788889887543332111111123444 33334567889999999999988775443 2 244
Q ss_pred ChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 433 SPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 433 ~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
|....+++.|.++|.+.++.+.+.-..+++-+++.
T Consensus 512 -pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisl 546 (1075)
T KOG2171|consen 512 -PYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSL 546 (1075)
T ss_pred -hHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHH
Confidence 35678999999999988877766666665555553
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=9e-05 Score=61.14 Aligned_cols=86 Identities=26% Similarity=0.340 Sum_probs=69.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
|..|+..| .+.++.+|..|+.+|+.+... ..++.|++++++++ +.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDED-PMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC--------
Confidence 34577888 788999999999999955321 45999999998888 9999999999999853
Q ss_pred HhcCCHHHHHHhhcCC-CHHHHHHHHHHHH
Q 040681 237 VSELGVPTIVNVLSDS-IMKVQIQVASLVA 265 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~ 265 (594)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34799999999886 6667999988874
No 67
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.0012 Score=74.86 Aligned_cols=239 Identities=20% Similarity=0.184 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHH-HhhCChhHHHHHHhcCCHHHHHHhhcC
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALY-NIANDQERVRVIVSELGVPTIVNVLSD 251 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~-~La~~~~~~~~iv~~g~i~~Lv~lL~~ 251 (594)
|..|+.-|.....-.+-....-...|..|..++||+++. .+++---+..=. -|+-|+.+...+++++|-..++++|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 555666665444333444445556799999999999998 777765554333 356798899999999999999999987
Q ss_pred -C--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCC
Q 040681 252 -S--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSK 328 (594)
Q Consensus 252 -~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g 328 (594)
. +++-|..||-+|+-++.+.+..|....+.+.+..-+++|+++. +
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~---~----------------------------- 613 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP---E----------------------------- 613 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc---c-----------------------------
Confidence 3 6799999999999999987778888777776666666665531 1
Q ss_pred CcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHH
Q 040681 329 NYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCL 408 (594)
Q Consensus 329 ~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~ 408 (594)
| -++..++-+|+.|-...++.+-.-++.++.+.|..+|.++-++|+..|.
T Consensus 614 ---p---------------------------LLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAV 663 (1387)
T KOG1517|consen 614 ---P---------------------------LLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAV 663 (1387)
T ss_pred ---H---------------------------HHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHH
Confidence 1 1345566677777666777777778999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc---HHHHHHhc
Q 040681 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV---IGPLVAHL 485 (594)
Q Consensus 409 ~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~---i~~Lv~lL 485 (594)
.||.-+-.....+ |-.+ ..+++..+.+ . + ..+. .+.-+ .-.++.++
T Consensus 664 FALgtfl~~~~d~-------fde~----~~~~~~~~~l-~--~-~~~~----------------~E~~i~~~~~~ll~~v 712 (1387)
T KOG1517|consen 664 FALGTFLSNGSDN-------FDEQ----TLVVEEEIDL-D--D-ERTS----------------IEDLIIKGLMSLLALV 712 (1387)
T ss_pred HHHHHHhcccccc-------cchh----hhhhhhhhcc-h--h-hhhh----------------HHHHHHhhHHHHHHHH
Confidence 9998665322111 1111 1133333321 0 0 0000 01111 24777888
Q ss_pred cCCCHHHHHHHHHHHHHhcC
Q 040681 486 SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 486 ~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+++++-|+.|.+.+|..++.
T Consensus 713 sdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 713 SDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hccchHHHHHHHHHHHHHHH
Confidence 99999999999999999987
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.71 E-value=0.0001 Score=60.79 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII 519 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~ 519 (594)
++.|++.|.++.++.++..++.+|+.+. ...+++.|++++++.++.|+.+|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 4678888866666999999999999654 44789999999999999999999999999843
Q ss_pred HcCChHHHHHhccCCch--HhHhHH
Q 040681 520 EFNAVPPLMRLLRGNDR--TQLHGL 542 (594)
Q Consensus 520 ~~g~i~~Lv~lL~~~~~--vq~~Al 542 (594)
..+++.|.+++.+.+. ++..|.
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3488999999986543 666554
No 69
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.68 E-value=8.7e-05 Score=51.67 Aligned_cols=40 Identities=40% Similarity=0.640 Sum_probs=36.5
Q ss_pred chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 188 DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 188 ~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
+.++..+++.|+|++|+++|++++ +++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC
Confidence 458889999999999999999877 9999999999999973
No 70
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.68 E-value=0.0027 Score=65.92 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=155.0
Q ss_pred HHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC
Q 040681 164 AIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIANDQERVRVIVSELG 241 (594)
Q Consensus 164 ~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~ 241 (594)
.+++ .+.+...-|+.+|..+.+. +++|-.++.++|+..|+..|. ....-.+|-+...+++.|+.++.-.+.+-..+.
T Consensus 164 ~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~l 242 (442)
T KOG2759|consen 164 QLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDL 242 (442)
T ss_pred HHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccH
Confidence 4444 6677888899999999988 899999999999999999884 332378899999999999999888888888889
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCH------HhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH--
Q 040681 242 VPTIVNVLSDS-IMKVQIQVASLVARMAEHDA------LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI-- 312 (594)
Q Consensus 242 i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l-- 312 (594)
|+.|+.++++. ..+|..-+..++.|+....+ +....+..++ +++-+++|...--.+.. +.. -+..+
T Consensus 243 i~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDED--L~~--di~~L~e 317 (442)
T KOG2759|consen 243 IQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDED--LVD--DIEFLTE 317 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHH--HHH--HHHHHHH
Confidence 99999999977 78899999999999998664 2334455444 55556666543111111 000 00000
Q ss_pred HHHhhhhc---ccccc---cCCCcccc-cchhcc-ccCCC--ccccc-----------cccCChHHHHHHHHHHHHHHHH
Q 040681 313 VQINKEME---KNSFV---GSKNYRPY-LYSEYC-SSRSG--QNRKD-----------RENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 313 ~l~~~~~~---~~~~~---~~g~~~~L-~~~~~~-~s~~~--~~~~~-----------~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
-+.+.... -+.+. .+|..+.- ++.... ++.+. .+-+. ....||.+ ...|+.=++.
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i----L~VAc~DIge 393 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII----LCVACHDIGE 393 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce----eehhhhhHHH
Confidence 00000000 01111 33443311 000000 00000 00000 12223322 3345555666
Q ss_pred hccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 372 LARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
..+..|+.+..+...||=..+++||.+++++|+.+|..|+.-|-
T Consensus 394 ~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 394 YVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 65666887888889999999999999999999999999997654
No 71
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.021 Score=63.53 Aligned_cols=325 Identities=17% Similarity=0.211 Sum_probs=169.6
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh
Q 040681 152 DPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE 231 (594)
Q Consensus 152 ~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~ 231 (594)
+.+-.+..+.|....+.+.++|.----+|...|..++...- =-|..+-+-|++++ +.++..|.++|..+=
T Consensus 67 ~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSIntfQk~L~DpN-~LiRasALRvlSsIR---- 136 (968)
T KOG1060|consen 67 KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSINTFQKALKDPN-QLIRASALRVLSSIR---- 136 (968)
T ss_pred CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHHHHHhhhcCCc-HHHHHHHHHHHHhcc----
Confidence 33334455566666677777777776777666665443211 13566677788888 888865555555432
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccc-hh-h-
Q 040681 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSG-KQ-S- 308 (594)
Q Consensus 232 ~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~-~~-s- 308 (594)
..++..=.+-.+-+...+.++-||..||.+|-+|-+-+++-+.++.+ +|. .||.+.++.--..++.. +. |
T Consensus 137 --vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e--~I~---~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 137 --VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE--VIK---KLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred --hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH--HHH---HHhcCCCCcchhHHHHHHHHhch
Confidence 12221111222333445668899999999999998877766665544 233 23333321100000000 00 0
Q ss_pred ---------HHHHHHHhhhhcc--ccc--------ccCCCccccc-chhcc-ccCC------CccccccccCChHHHH--
Q 040681 309 ---------IHTIVQINKEMEK--NSF--------VGSKNYRPYL-YSEYC-SSRS------GQNRKDRENEKPEVKI-- 359 (594)
Q Consensus 309 ---------i~~l~l~~~~~~~--~~~--------~~~g~~~~L~-~~~~~-~s~~------~~~~~~~~~~dp~~k~-- 359 (594)
.|.+|..-...++ +.+ ...+...|.. ...++ -+.+ +...+.....||..+.
T Consensus 210 erldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL 289 (968)
T KOG1060|consen 210 ERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLL 289 (968)
T ss_pred hHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHH
Confidence 0111100000000 000 0111111100 00000 0000 0001111122333321
Q ss_pred ------------HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH-
Q 040681 360 ------------KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR- 426 (594)
Q Consensus 360 ------------~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~- 426 (594)
.+.-.++++.|.++..+ ++ .+.+..|+.||.+. .++|+- .|+||+.++..++.+-.
T Consensus 290 ~stkpLl~S~n~sVVmA~aql~y~lAP~~-~~------~~i~kaLvrLLrs~-~~vqyv---vL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 290 QSTKPLLQSRNPSVVMAVAQLFYHLAPKN-QV------TKIAKALVRLLRSN-REVQYV---VLQNIATISIKRPTLFEP 358 (968)
T ss_pred HhccHHHhcCCcHHHHHHHhHHHhhCCHH-HH------HHHHHHHHHHHhcC-Ccchhh---hHHHHHHHHhcchhhhhh
Confidence 23456788899986422 22 23478889988754 455553 33343433344432211
Q ss_pred ---Hhhhc-------------------CChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHh
Q 040681 427 ---AAFKT-------------------NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAH 484 (594)
Q Consensus 427 ---~~~~~-------------------~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~l 484 (594)
..|+. +..-...++..+..++++++ -.+...++++||..+..........+.-||.+
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~L 437 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRIGSVTDTCLNGLVQL 437 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhCchhhHHHHHHHHH
Confidence 01111 11114456667777887777 46888999999999976555555778999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcC
Q 040681 485 LSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 485 L~~~~~~v~~~Aa~aL~nl~~ 505 (594)
|.+.+..|..+|+..|..+..
T Consensus 438 lsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 438 LSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HhcccchhHHHHHHHHHHHHh
Confidence 999999999999999999976
No 72
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.54 E-value=0.00019 Score=49.94 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=36.4
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 230 QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 230 ~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
++++..+++.|++++|+++|++++.+++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457889999999999999999989999999999999997
No 73
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.037 Score=63.25 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhccCchhHHHHH----hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHh
Q 040681 173 RIEAAIELASLAKDNDRNKKIIV----EEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNV 248 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~----~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~l 248 (594)
..-++.+|+|+...|++....+- -.|..+.+..+|.....+.++..|..++..+..+.++...++..|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 34578999999998886654433 23777888888887655899999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 249 L~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
|.+ -+..|+.+..+|+.|+++. +..+.-.++|++..+..++-..
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~ 1865 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLT 1865 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhcc
Confidence 976 4667899999999999854 6666667889988888776444
No 74
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.027 Score=56.70 Aligned_cols=281 Identities=16% Similarity=0.166 Sum_probs=170.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhH----HHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNK----KIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~----~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
|-.-|..+|..+|.-|+..++.+..+++.|. ..++..|..+.++..+...+ .++-..|...|..++..++.-..|
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpaaleai 165 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPAALEAI 165 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHHHHHHh
Confidence 3334556788899999999988888777443 34557788888999888877 899999999999999999998888
Q ss_pred HhcCCHHHHH--HhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIV--NVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv--~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
++.....++- .+--..+.-+|-++...+-.+.+-+|+.....-..|.+..|..-|... ++. +
T Consensus 166 FeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDt-----------L-- 229 (524)
T KOG4413|consen 166 FESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDT-----------L-- 229 (524)
T ss_pred cccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cce-----------e--
Confidence 8766554432 222223455677788888888888887777776667655555444322 111 0
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+..++......|+. ....++.+..+|.+..+..
T Consensus 230 ----------------------------------------------VianciElvteLae-teHgreflaQeglIdlicn 262 (524)
T KOG4413|consen 230 ----------------------------------------------VIANCIELVTELAE-TEHGREFLAQEGLIDLICN 262 (524)
T ss_pred ----------------------------------------------ehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHH
Confidence 12233333344432 2334666667777777777
Q ss_pred HhhhC--CHHHHHHHHHHHHHHH----HHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 395 LVEKE--QGELQFNCLMTIMEIT----AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 395 LL~~~--~~~v~~~A~~aL~nL~----~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++... ++--+..+.+....+- -+......+.++ ..-.++..+..+...| ++.++.|+-++|-|-.
T Consensus 263 IIsGadsdPfekfralmgfgkffgkeaimdvseeaicea--------liiaidgsfEmiEmnD-pdaieaAiDalGilGS 333 (524)
T KOG4413|consen 263 IISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA--------LIIAIDGSFEMIEMND-PDAIEAAIDALGILGS 333 (524)
T ss_pred HhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH--------HHHHHHhhHHhhhcCC-chHHHHHHHHHHhccC
Confidence 76532 2322333333322221 000011112221 1225566666666666 9999999999999987
Q ss_pred CChhhhh----c--cHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 469 TFPARET----R--VIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 469 ~~~~~~~----~--~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
+....+. | ....++.-. +.....-+..+..+|.+++. ..++.++++
T Consensus 334 nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag-elrlkpeqi 386 (524)
T KOG4413|consen 334 NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG-ELRLKPEQI 386 (524)
T ss_pred CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc-cccCChhhc
Confidence 6654332 2 233333333 33334456677789999876 555444443
No 75
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.011 Score=58.03 Aligned_cols=228 Identities=18% Similarity=0.242 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVN 247 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~ 247 (594)
+..-+.+.+.+|+.... +.+||.|+..|... ..+.++.+|+.+|+.+. ++ +.++.+-+
T Consensus 49 s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k 107 (289)
T KOG0567|consen 49 SALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTK 107 (289)
T ss_pred hhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHH
Confidence 33455566777766653 36899999977653 23788999999999988 43 34667777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccC
Q 040681 248 VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGS 327 (594)
Q Consensus 248 lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~ 327 (594)
..+++.+.|++.+..++.++-..+ .+...--..++.. . |+..-.+..+++.+-...+
T Consensus 108 ~~~dp~~~v~ETc~lAi~rle~~~-----~~~~~~~~~p~~S--v------dPa~p~~~ssv~~lr~~ll---------- 164 (289)
T KOG0567|consen 108 YIKDPCKEVRETCELAIKRLEWKD-----IIDKIANSSPYIS--V------DPAPPANLSSVHELRAELL---------- 164 (289)
T ss_pred HhcCCccccchHHHHHHHHHHHhh-----ccccccccCcccc--C------CCCCccccccHHHHHHHHH----------
Confidence 777778889998888888874322 1111000111111 0 1110011112222200000
Q ss_pred CCcccccchhccccCCCccccccccCChHHHH-HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHH
Q 040681 328 KNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI-KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFN 406 (594)
Q Consensus 328 g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~-~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~ 406 (594)
| +++. .-+..+..+|+|+ |.++ +|..|+.-+..++.-.|..
T Consensus 165 --------------------------d-~t~~l~~Ry~amF~LRn~--g~Ee---------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 165 --------------------------D-ETKPLFERYRAMFYLRNI--GTEE---------AINALIDGLADDSALFRHE 206 (289)
T ss_pred --------------------------h-cchhHHHHHhhhhHhhcc--CcHH---------HHHHHHHhcccchHHHHHH
Confidence 0 0000 0133455666666 4454 5777777777777778888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc
Q 040681 407 CLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS-PTLQIPAIKSIGSLARTFPARETRVIGPLVAHL 485 (594)
Q Consensus 407 A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~-~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL 485 (594)
++.++..|- . +..++.|.+.|..... +-|+..|+.+||.++ ....++.|.+.+
T Consensus 207 vAfVfGQl~-----s---------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa------~e~~~~vL~e~~ 260 (289)
T KOG0567|consen 207 VAFVFGQLQ-----S---------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA------DEDCVEVLKEYL 260 (289)
T ss_pred HHHHHhhcc-----c---------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc------CHHHHHHHHHHc
Confidence 888886653 1 1245566666554432 789999999999998 346788999999
Q ss_pred cCCCHHHHHHHHHHHHHhc
Q 040681 486 SHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 486 ~~~~~~v~~~Aa~aL~nl~ 504 (594)
++.++-|++.+..+|.-.-
T Consensus 261 ~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 261 GDEERVVRESCEVALDMLE 279 (289)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 9999989988888887653
No 76
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.013 Score=64.49 Aligned_cols=221 Identities=17% Similarity=0.207 Sum_probs=152.5
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
-+-++.||.++. +-++..|+.+|..+.. -++. + ..++|-|+.-|.++++.|+..|+.+++.|+..+|.+--.
T Consensus 146 a~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 345778899988 9999999999998875 3433 2 125799999999999999999999999999988844222
Q ss_pred HHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHH
Q 040681 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVK 358 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k 358 (594)
.-|.+.++|.+.+ +.
T Consensus 219 ----LAP~ffkllttSs---NN---------------------------------------------------------- 233 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSS---NN---------------------------------------------------------- 233 (877)
T ss_pred ----ccHHHHHHHhccC---CC----------------------------------------------------------
Confidence 3466677765442 10
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCH-HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 359 IKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG-ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 359 ~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~-~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
++........++|+--.|-.. ...+++|..++++... .+.+.|..++..- .+.++.++.-. .++
T Consensus 234 -WmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~-s~s~g~~d~~a--------siq 298 (877)
T KOG1059|consen 234 -WVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAV-SMSSGMSDHSA--------SIQ 298 (877)
T ss_pred -eehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheee-hhccCCCCcHH--------HHH
Confidence 122233555666654444432 2368899999987653 5566666665321 11122111112 134
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.+|..|-.++.+.| +.++--++-+++.+..+.+..-...-..++++|++.+..++..|.-.|.-++..+|
T Consensus 299 LCvqKLr~fiedsD-qNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN 368 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN 368 (877)
T ss_pred HHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh
Confidence 57888888887666 88888899999999877664434455778899999999999999999999987444
No 77
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.36 E-value=0.036 Score=58.61 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=171.3
Q ss_pred HHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC--CHH
Q 040681 178 IELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS--IMK 255 (594)
Q Consensus 178 ~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~--~~~ 255 (594)
..|..+.+.++..+..+.-....+.+..++-+++ .+++-.+.++++.+..+.+.-..+.+.+.--.++.-|..+ ...
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 4455556666655555444344455554454555 8999999999999999999999999988777777777654 444
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccc
Q 040681 256 VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLY 335 (594)
Q Consensus 256 v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~ 335 (594)
=|++|...+..+.... .....+ -.|.++.+|.+.... +
T Consensus 84 ER~QALkliR~~l~~~-~~~~~~-~~~vvralvaiae~~---~------------------------------------- 121 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK-KGPKEI-PRGVVRALVAIAEHE---D------------------------------------- 121 (371)
T ss_pred HHHHHHHHHHHHHHhc-CCcccC-CHHHHHHHHHHHhCC---c-------------------------------------
Confidence 5778999888887652 122222 235566677665443 1
Q ss_pred hhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 336 SEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 336 ~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
+.++..|..+|..++..+|+ .+++.||+..|.+.+-.+..++....+.++..+-
T Consensus 122 -----------------------D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 122 -----------------------DRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred -----------------------hHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 24577888999999877665 5678999999999998776667778888888775
Q ss_pred HHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC------CCh--hhHHHHHHHHHHhhcCChhhh------hccHHHH
Q 040681 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL------DSP--TLQIPAIKSIGSLARTFPARE------TRVIGPL 481 (594)
Q Consensus 416 ~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~------~~~--~v~~~a~~aL~~La~~~~~~~------~~~i~~L 481 (594)
++|..|+ -+.... -++.++....+. ++. +-...+..++..+-++++..- -..+..|
T Consensus 176 ----d~p~tR~-yl~~~~-----dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 176 ----DSPRTRK-YLRPGF-----DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred ----CCcchhh-hhcCCc-----cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 6677777 233211 244444444333 112 355678888888888776421 2678999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcC
Q 040681 482 VAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 482 v~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..|.-+++++++.....+..+-.
T Consensus 246 v~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHC
Confidence 999999999999988888877644
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.074 Score=58.08 Aligned_cols=288 Identities=18% Similarity=0.192 Sum_probs=170.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHH----HHHHHhhCChhHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAA----TALYNIANDQERV 233 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~----~aL~~La~~~~~~ 233 (594)
...+...+...+...+..|+..+..+..++ .-..+.+.+.+..|-+.+++.++...++.+. .+.++|..
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----- 208 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----- 208 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-----
Confidence 344566777888899999999999988763 3355667788888888887765333333122 22233332
Q ss_pred HHHHhcCCHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 234 RVIVSELGVPTIVNVL---SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL---~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
-.+...+|.+-.+| .+...+||+.+..+...+-..- ...+++.++--+-..
T Consensus 209 --~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--------~~~aVK~llpsll~~---------------- 262 (569)
T KOG1242|consen 209 --PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--------SAYAVKLLLPSLLGS---------------- 262 (569)
T ss_pred --CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc--------CcchhhHhhhhhHHH----------------
Confidence 12334444444444 4557888888877766654321 123444333221111
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
+. + .|=..+..++..|+.++.. ...+-......++|
T Consensus 263 -l~---------------------------------------~---~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP 298 (569)
T KOG1242|consen 263 -LL---------------------------------------E---AKWRTKMASLELLGAMADC-APKQLSLCLPDLIP 298 (569)
T ss_pred -HH---------------------------------------H---HhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhH
Confidence 00 0 0001255567777777533 33355566778999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc-----------------------------CChhhHHHHH
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT-----------------------------NSPAAKAVVD 441 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~-----------------------------~~~~~~~~v~ 441 (594)
.+...|.+.+++++..+-.+|-.++..- .|+++.+ +.+ ..|...-+++
T Consensus 299 ~lsevl~DT~~evr~a~~~~l~~~~svi-dN~dI~~--~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvp 375 (569)
T KOG1242|consen 299 VLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPDIQK--IIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVP 375 (569)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHHHHH--HHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHH
Confidence 9999999999999999999999988765 5777766 221 1111122233
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh--cc----HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPARET--RV----IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~--~~----i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
.|-+-+... +......++..++|+|.-.+..+. .+ +|.|-..+.+..+++|..++.||+.+.- ..
T Consensus 376 iL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e--------~~ 446 (569)
T KOG1242|consen 376 ILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE--------RL 446 (569)
T ss_pred HHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH--------HH
Confidence 333333322 367778899999999975432221 22 3444444466689999999999988743 11
Q ss_pred HHHHHcCChHHHHHhccCC
Q 040681 516 KAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 516 ~~i~~~g~i~~Lv~lL~~~ 534 (594)
......+.+|.|...++..
T Consensus 447 g~~~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 447 GEVSFDDLIPELSETLTSE 465 (569)
T ss_pred HhhcccccccHHHHhhccc
Confidence 1111256677777777644
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.32 E-value=0.00041 Score=51.95 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARM 267 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~L 267 (594)
+.++..|+++|++++........-.....++.|+.+|++++.+||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987544433334556899999999999889999999999875
No 80
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.26 E-value=0.042 Score=59.80 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=170.6
Q ss_pred HHHHHHhhccCchhHHHHHhcCChHHHHHhh---------ccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHH
Q 040681 177 AIELASLAKDNDRNKKIIVEEGGVPPLLKLL---------KETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIV 246 (594)
Q Consensus 177 a~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL---------~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv 246 (594)
+.+|+-+.++ +.+...+....++..|+++= ....+.++..+|.++|+|+-. ++..|..+++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777766 66667777777777777754 223348999999999999987 677899999999999999
Q ss_pred HhhcCC-----CHHHHHHHHHHHHHHhhcCHHhHHHHH-HcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhc
Q 040681 247 NVLSDS-----IMKVQIQVASLVARMAEHDALAQDDFA-RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEME 320 (594)
Q Consensus 247 ~lL~~~-----~~~v~~~aa~aL~~La~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~ 320 (594)
..|+.. +.++.--..++|.=++...+..+..+. +++++..++..|.........
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~-------------------- 140 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK-------------------- 140 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc--------------------
Confidence 999887 788888899999888876666665554 458888888887654211000
Q ss_pred ccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC-
Q 040681 321 KNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE- 399 (594)
Q Consensus 321 ~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~- 399 (594)
.... .....|. .......+.+.+.|+....+.... -.+...++.++.++..-
T Consensus 141 ----------------------~~~~---~~~~~~~-~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l 193 (446)
T PF10165_consen 141 ----------------------SSQE---PTAPSPM-DEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLL 193 (446)
T ss_pred ----------------------cccc---cCCCCcc-hHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHh
Confidence 0000 0000000 123345567888887543222111 12344555555554321
Q ss_pred --------CHHHHHHHHHHHHHHHHHhcCCHHH-------HHHhhhcCChhhHHHHHHHHHHHhc----CC---ChhhHH
Q 040681 400 --------QGELQFNCLMTIMEITAAAESNADL-------RRAAFKTNSPAAKAVVDQLLRVIND----LD---SPTLQI 457 (594)
Q Consensus 400 --------~~~v~~~A~~aL~nL~~~~~~~~~~-------r~~~~~~~~~~~~~~v~~Ll~lL~s----~~---~~~v~~ 457 (594)
......++..+|.|+= -...+. ..+ .. ..+.-..++..|+.+|+. .. -++...
T Consensus 194 ~~~~~~~~l~~~~~~~in~L~nlp---l~~~~~l~~~~~~~~~-~~-~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~ 268 (446)
T PF10165_consen 194 PPPPSSPPLDPPHSHAINALLNLP---LECLDSLLSPKFQQSS-LF-PEGDNMDVVERLLDFLDKRLDKYEALKLDELLT 268 (446)
T ss_pred ccCCCCCcchhhHHHHHHHHhCCC---hHHHhhhhcccCCccc-cc-CCCCChHHHHHHHHHHHHHHHhcCcccchhhHh
Confidence 1356667778887651 111100 000 00 011123466666666653 21 135778
Q ss_pred HHHHHHHHhhcCChhhh---------------------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 458 PAIKSIGSLARTFPARE---------------------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~---------------------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
|.+.+|.++++...... ...-..|++++.+..+.++..++..|..++.
T Consensus 269 PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 269 PLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 89999999997543211 1346899999988888888888888888754
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.20 E-value=0.00064 Score=50.89 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHhhcCChhhh----hccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 453 PTLQIPAIKSIGSLARTFPARE----TRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
+.++..|+.+||+++...+... ..+++.|+.+|.+++..|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999886554332 27889999999999999999999999985
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.089 Score=58.25 Aligned_cols=229 Identities=17% Similarity=0.248 Sum_probs=148.8
Q ss_pred ccCCcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHH
Q 040681 144 TLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATAL 223 (594)
Q Consensus 144 ~l~~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL 223 (594)
||..+..-+=.+.+..+++.+|.+.-+-+|..|...|..+.- +|-.++. ..+|.|+.-|.+++ +.++-.|+.++
T Consensus 132 GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAlr--~~FprL~EkLeDpD-p~V~SAAV~VI 205 (877)
T KOG1059|consen 132 GLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL---KYPEALR--PCFPRLVEKLEDPD-PSVVSAAVSVI 205 (877)
T ss_pred ccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhHh--hhHHHHHHhccCCC-chHHHHHHHHH
Confidence 444444444445677888999999999999999999877764 3334443 56899999999999 99999999999
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCcc
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPR 301 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 301 (594)
|.||+ +|.+--.+ -|.+-++|.+. +-=+.-......++|+-..|.-. ...+++|.+++.+..
T Consensus 206 CELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~------ 269 (877)
T KOG1059|consen 206 CELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTV------ 269 (877)
T ss_pred HHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhH------
Confidence 99998 77654333 57788888765 43456667778888877665322 236889999987652
Q ss_pred CccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHH--HhccCChhh
Q 040681 302 ANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALW--MLARGSVAN 379 (594)
Q Consensus 302 ~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~--~L~~~~~~~ 379 (594)
.++ + ...|..++- ++..|.++.
T Consensus 270 ----AmS---L-------------------------------------------------lYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 270 ----AMS---L-------------------------------------------------LYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred ----HHH---H-------------------------------------------------HHHHHHHheeehhccCCCCc
Confidence 111 0 011111110 333343222
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHH
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPA 459 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a 459 (594)
-..+. =++..|-.++++.++++++-++.|+.-|. .-++..-. +--+.++++|...| +.++..|
T Consensus 294 ~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~---ktHp~~Vq-----------a~kdlIlrcL~DkD-~SIRlrA 356 (877)
T KOG1059|consen 294 SASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKIL---KTHPKAVQ-----------AHKDLILRCLDDKD-ESIRLRA 356 (877)
T ss_pred HHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHh---hhCHHHHH-----------HhHHHHHHHhccCC-chhHHHH
Confidence 22111 14666667778888888888887776665 44553222 24466777777666 7788777
Q ss_pred HHHHHHhh
Q 040681 460 IKSIGSLA 467 (594)
Q Consensus 460 ~~aL~~La 467 (594)
+-.|--+.
T Consensus 357 LdLl~gmV 364 (877)
T KOG1059|consen 357 LDLLYGMV 364 (877)
T ss_pred HHHHHHHh
Confidence 77776665
No 83
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.17 E-value=0.062 Score=56.55 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCHHH--HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 159 WSYIAAIQMGQLSD--RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 159 ~~lv~~L~~~~~~~--~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
..|+.+++..+.+. |.+|+..|..+.. .+|+..|+..| ...++.+-+....++.+...+..|.++-. +++....
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33677778777665 8999999988765 46777777766 55555655666558999999999999987 4567899
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHh
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTL 290 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~l 290 (594)
++..|++..++--.+..++.+...++-+|.|++-+. ...+.-+++..+-+-|.-+
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~L 315 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPL 315 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhh
Confidence 999999999988888889999999999999998763 3455555555554444433
No 84
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.17 E-value=0.0023 Score=54.14 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 040681 216 QSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLS--DSIMKVQIQVASLVARMAEHDALAQDDFARE 281 (594)
Q Consensus 216 ~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~--~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~ 281 (594)
+...+.+|+||+. ++..+..+.+.||||.++..-. ..+|-+++.|.++|.+|+..++++|..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4456789999997 7788999999999999998764 3489999999999999999999999999863
No 85
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.23 Score=55.48 Aligned_cols=348 Identities=16% Similarity=0.140 Sum_probs=187.4
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc----cCCCHHHHHHHHHHHHHhhCChhHHHHHHh-c
Q 040681 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK----ETASSEAQSAAATALYNIANDQERVRVIVS-E 239 (594)
Q Consensus 165 L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~----~~~~~~v~e~A~~aL~~La~~~~~~~~iv~-~ 239 (594)
|.+.-+.....|+.++..++.-.- -.+.-|-|+..|. +..+..+++.++.+||.+|.+-+-....-. .
T Consensus 99 L~~~ep~~~s~Aaq~va~IA~~El-------P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN 171 (859)
T KOG1241|consen 99 LGSPEPRRPSSAAQCVAAIACIEL-------PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN 171 (859)
T ss_pred cCCCCCCccchHHHHHHHHHHhhC-------chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 333344445556666666554211 1234455555443 333246889999999999984332222222 2
Q ss_pred CCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 240 LGVPTIVNVLSD--SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 240 g~i~~Lv~lL~~--~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.++..++.-.+. ++..||-.|..+|.|--. ..+..|...+-...++...-..+
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe---f~~~nF~~E~ern~iMqvvcEat---------------------- 226 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLE---FTKANFNNEMERNYIMQVVCEAT---------------------- 226 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHH---HHHHhhccHhhhceeeeeeeecc----------------------
Confidence 345556655443 378899999999987533 12222211110111111100000
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
...| .+++..|..+|..+....-+..+.-.+...+..-+.-+.
T Consensus 227 ---------------------------------q~~d----~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk 269 (859)
T KOG1241|consen 227 ---------------------------------QSPD----EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK 269 (859)
T ss_pred ---------------------------------cCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0011 244666666776664333332222233334555556667
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHH----HHHhhhcCC---------hhhHHHHHHHHHHHhcCC------ChhhHHH
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADL----RRAAFKTNS---------PAAKAVVDQLLRVINDLD------SPTLQIP 458 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~----r~~~~~~~~---------~~~~~~v~~Ll~lL~s~~------~~~v~~~ 458 (594)
+.++++...+...=+++| +...|+ .. ++-... ++.+.++|.|+.+|...+ ++.+-..
T Consensus 270 s~~deValQaiEFWstic---eEEiD~~~e~~e-~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTIC---EEEIDLAIEYGE-AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred CCcHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 888888887777766666 221221 11 111111 234578999999998732 3566677
Q ss_pred HHHHHHHhhcCChhhh-hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-
Q 040681 459 AIKSIGSLARTFPARE-TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR- 536 (594)
Q Consensus 459 a~~aL~~La~~~~~~~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~- 536 (594)
|-.+|.-++..-...- ..++|.+=+-+.++++.-+..|+.|++.+--+.. +...+.++ .+++|.++.++....-
T Consensus 346 Ag~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~---~~~Lt~iV-~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE---PDKLTPIV-IQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc---hhhhhHHH-hhhhHHHHHHhcCchhh
Confidence 7777777774221111 1344444446689999999999999999866333 34444444 4689999999984333
Q ss_pred HhHh-HHHHHH---------------HHHHHHHhhhccccccccchHHHHHHHHHHhcc--cccc-cCCCCCCCCC
Q 040681 537 TQLH-GLALEQ---------------ARVLTALEGADRTVVAQHPELKELVSEALYHLN--LYHA-GVHPQRQAYA 593 (594)
Q Consensus 537 vq~~-Al~l~~---------------~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~--~~~~-~~~~~~~~~~ 593 (594)
++.. |..+.+ ..++.+|- + .+.+.|.+-.-.+||+.-+- .|.+ -++++.+++-
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~---~-gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t 493 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALL---E-GLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT 493 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH---H-HhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 4422 222221 11111111 1 13347889999999998884 6666 3345665553
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.013 Score=65.29 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
...+...++.+++.+|..|+.+...+-. .....+.+.|.++.|-.++.+.+ +.+..+|+.+|..+..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHE 189 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHH
Confidence 4446678889999999999999988754 34567778899999999999887 9999999999999986
No 87
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.033 Score=60.98 Aligned_cols=260 Identities=16% Similarity=0.210 Sum_probs=160.3
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH--Hh---cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI--VS---ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i--v~---~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
.++|.|..+|.+++ ...+|-|..||..++.|....-.- .. .-.+|.++++.+++++++|..|..++-..-...
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence 56889999999988 889999999999999865432111 01 125899999999999999999988775543321
Q ss_pred HhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccccc
Q 040681 273 LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDREN 352 (594)
Q Consensus 273 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~ 352 (594)
.+..+. .|..+++.|-.- ..-
T Consensus 206 -~qal~~---~iD~Fle~lFal-------------------------------------------------------anD 226 (885)
T KOG2023|consen 206 -TQALYV---HIDKFLEILFAL-------------------------------------------------------AND 226 (885)
T ss_pred -cHHHHH---HHHHHHHHHHHH-------------------------------------------------------ccC
Confidence 122221 123333322110 001
Q ss_pred CChHHHHHHHHHHHHHHHHhccCChhhHHHH-HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc
Q 040681 353 EKPEVKIKLKIACAEALWMLARGSVANSRRI-SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT 431 (594)
Q Consensus 353 ~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i-~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~ 431 (594)
++|+ ++.+.|++|..|-.-.++ +.+ --.++++.+++.-++.++++-..||.....++ ++ +..+. ...
T Consensus 227 ~~~e----VRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a---eq-pi~~~-~L~- 294 (885)
T KOG2023|consen 227 EDPE----VRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA---EQ-PICKE-VLQ- 294 (885)
T ss_pred CCHH----HHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh---cC-cCcHH-HHH-
Confidence 2333 466778888887432222 111 12356777777778888899889998887665 43 33333 222
Q ss_pred CChhhHHHHHHHHH----------HHhcCC---------------------------------------------ChhhH
Q 040681 432 NSPAAKAVVDQLLR----------VINDLD---------------------------------------------SPTLQ 456 (594)
Q Consensus 432 ~~~~~~~~v~~Ll~----------lL~s~~---------------------------------------------~~~v~ 456 (594)
|....+++.|+. +|++.+ ++.+|
T Consensus 295 --p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR 372 (885)
T KOG2023|consen 295 --PYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR 372 (885)
T ss_pred --HHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh
Confidence 223445665543 333111 14577
Q ss_pred HHHHHHHHHhhcCChhhhh-ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHc--CChHHHHHhccC
Q 040681 457 IPAIKSIGSLARTFPARET-RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF--NAVPPLMRLLRG 533 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~~~~-~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~--g~i~~Lv~lL~~ 533 (594)
...+.+|.-|+.-++..-. -++|.|-+.|.+..+-+++.++.||+.++-|.. +.++.. .-||.|+++|..
T Consensus 373 kCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------QGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------hhcccchHHHHHHHHHHhcc
Confidence 7888888888865542222 445666677788999999999999999975322 112211 257778888887
Q ss_pred Cch-HhH
Q 040681 534 NDR-TQL 539 (594)
Q Consensus 534 ~~~-vq~ 539 (594)
..+ |+.
T Consensus 446 KkplVRs 452 (885)
T KOG2023|consen 446 KKPLVRS 452 (885)
T ss_pred Cccceee
Confidence 666 554
No 88
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.056 Score=58.24 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=56.7
Q ss_pred HHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHH
Q 040681 178 IELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQ 257 (594)
Q Consensus 178 ~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~ 257 (594)
++...+...|++....+ .|.|-.-|++.- +.++.+++++++.++...- -...++ ..+..|-.+|+++....|
T Consensus 249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k~-emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 249 RATVELLKENSQALLQL-----RPFLNSWLSDKF-EMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHhChHHHHHH-----HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhcchHHHH
Confidence 34444444444443332 234444555544 7899999999999886221 111221 246778888899999999
Q ss_pred HHHHHHHHHHhhcCHH
Q 040681 258 IQVASLVARMAEHDAL 273 (594)
Q Consensus 258 ~~aa~aL~~La~~~~~ 273 (594)
-.|.++|..|+...|+
T Consensus 321 FsA~Riln~lam~~P~ 336 (898)
T COG5240 321 FSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHHHhhCCc
Confidence 9999999999987763
No 89
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.01 E-value=0.004 Score=52.73 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccc
Q 040681 256 VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLY 335 (594)
Q Consensus 256 v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~ 335 (594)
.+.....+|+|||..++.+|+.+++.|+++.++..+..+ ++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD---~~n----------------------------------- 43 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID---DHN----------------------------------- 43 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC---ccc-----------------------------------
Confidence 356788999999999999999999999999999987554 111
Q ss_pred hhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHh
Q 040681 336 SEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISE 385 (594)
Q Consensus 336 ~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e 385 (594)
..+++.|..|+++|+.+++++++.+.+
T Consensus 44 -----------------------P~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 44 -----------------------PFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred -----------------------HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 135888999999999999999987765
No 90
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.075 Score=58.05 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchh-HHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRN-KKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~-~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
...+.++.........+|..|..+...+.+--+.+ .+. .+|+++.-+.... -..+..++..|+.++......-
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~k-WrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHH
Confidence 34444555555666777777777666655431221 111 2455555343334 5678889999999988666666
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
...-...+|.+.+.|-+..++++..+..+|.++++.- ++-+ |.. .+|.|++-+..++-.. ..|++++
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I~~--~ip~Lld~l~dp~~~~-------~e~~~~L-- 356 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-IQK--IIPTLLDALADPSCYT-------PECLDSL-- 356 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-HHH--HHHHHHHHhcCcccch-------HHHHHhh--
Confidence 6667789999999999999999999999999998743 2333 222 5677777776552000 0011111
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
.. ..... .++.-.+..++-
T Consensus 357 -------------------------------------------------------~~-----ttFV~-~V~~psLalmvp 375 (569)
T KOG1242|consen 357 -------------------------------------------------------GA-----TTFVA-EVDAPSLALMVP 375 (569)
T ss_pred -------------------------------------------------------cc-----eeeee-eecchhHHHHHH
Confidence 11 00000 011122334444
Q ss_pred Hh----hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 395 LV----EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 395 LL----~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
+| ...+.+++..++..+.|+|...+...++-. | .+.+++.|-..+..- .+++|.-+.++|+.+-..-
T Consensus 376 iL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap--f------l~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 376 ILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP--F------LPSLLPGLKENLDDA-VPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh--h------HHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Confidence 44 344567788899999999988754333222 2 233555565665544 4899999999998887533
Q ss_pred hhhh-hccHHHHHHhccCCCHHH-HHHHHHHHHHhc
Q 040681 471 PARE-TRVIGPLVAHLSHRNQEV-ATEAAIALQKFA 504 (594)
Q Consensus 471 ~~~~-~~~i~~Lv~lL~~~~~~v-~~~Aa~aL~nl~ 504 (594)
.... ...+|.+.+.+.+....+ +..++..|+...
T Consensus 447 g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl 482 (569)
T KOG1242|consen 447 GEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVL 482 (569)
T ss_pred HhhcccccccHHHHhhccchhhhhhHHHhhhHHHHH
Confidence 3222 356777777774433322 233444444443
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.013 Score=63.84 Aligned_cols=269 Identities=14% Similarity=0.132 Sum_probs=162.1
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-C---
Q 040681 155 LSWVWS-YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-D--- 229 (594)
Q Consensus 155 ~~~i~~-lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~--- 229 (594)
+..+|. ++..-+.+|..+|..|+..|..+..+ -+..+.+ ....++++++.. ..++..|+.+++-.+. .
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~-----Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKAC-----YSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHHH-----HHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCc
Confidence 346667 56566778999999999998877654 3333333 345678888887 8999988766655443 1
Q ss_pred --hh-HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC-CcCCCccCccc
Q 040681 230 --QE-RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE-TFVDDPRANSG 305 (594)
Q Consensus 230 --~~-~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~v~~ 305 (594)
.+ ....++ ..+...++..+.+.+..||..|+.+|+.+-..+++.-..-.+ ..+..-++.. +.....
T Consensus 269 ~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrp----- 338 (823)
T KOG2259|consen 269 LERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRP----- 338 (823)
T ss_pred ccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccch-----
Confidence 11 223333 246888999999999999999999999986544332111111 1122211111 000000
Q ss_pred hhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHh
Q 040681 306 KQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISE 385 (594)
Q Consensus 306 ~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e 385 (594)
..+..+|...++++..+...+.+ .++--..|+.
T Consensus 339 --------------------------------k~l~s~GewSsGk~~~advpsee---------------~d~~~~siI~ 371 (823)
T KOG2259|consen 339 --------------------------------KALYSSGEWSSGKEWNADVPSEE---------------DDEEEESIIP 371 (823)
T ss_pred --------------------------------HHHHhcCCcccCccccccCchhh---------------cccccccccc
Confidence 00001122222233322111111 1222445777
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.|+.-.++.-|+++--+|+.+|...++.|+ ...|.+- ...++-|+..+++.. ..|+..|+.+|..
T Consensus 372 sGACGA~VhGlEDEf~EVR~AAV~Sl~~La---~ssP~FA-----------~~aldfLvDMfNDE~-~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 372 SGACGALVHGLEDEFYEVRRAAVASLCSLA---TSSPGFA-----------VRALDFLVDMFNDEI-EVVRLKAIFALTM 436 (823)
T ss_pred ccccceeeeechHHHHHHHHHHHHHHHHHH---cCCCCcH-----------HHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 888888888888777788888888886665 4444221 226677777776554 7888889999888
Q ss_pred hhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 466 LARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
++.... .+...++.+...|.+.+.+++.+.-..|.+.
T Consensus 437 Is~~l~-i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 437 ISVHLA-IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHhe-ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 885422 2235577788888888888888777666654
No 92
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.87 E-value=0.12 Score=56.20 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhC-ChhHHHHHH-hc
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIAN-DQERVRVIV-SE 239 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~-~~~~~~~iv-~~ 239 (594)
...+..+..+|+++|.|+...++..+..+++.|+.+.+++.|+... +.++.--..+.|..++. ..+.+..++ +.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3457889999999999999999999999999999999999998871 27888888888888775 666777777 45
Q ss_pred CCHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc
Q 040681 240 LGVPTIVNVLSDS-----------------IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 240 g~i~~Lv~lL~~~-----------------~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~ 293 (594)
+++..++..|... +......+..+++|+..+.+..... ...+.++.|+.+|..
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~-~~~~~~~~l~~il~~ 191 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE-EFSPSIPHLVSILRR 191 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch-hhhHHHHHHHHHHHH
Confidence 7888888876321 3345667888899998765433330 123467777777653
No 93
>PF05536 Neurochondrin: Neurochondrin
Probab=96.85 E-value=0.16 Score=56.63 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=132.6
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChh----HHHHHHhcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQE----RVRVIVSELGVPTIVNVLSDS-------IMKVQIQVASLVARMA 268 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~----~~~~iv~~g~i~~Lv~lL~~~-------~~~v~~~aa~aL~~La 268 (594)
+..-+++|+..+ .+-+-.+...+.++....+ .++.|.++=|.+.|-++|+++ ....+.-+..+|+.+|
T Consensus 7 l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 455678898887 7777778888888876333 255688888899999999883 3557888889999999
Q ss_pred hcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccc
Q 040681 269 EHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRK 348 (594)
Q Consensus 269 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~ 348 (594)
. +|+....-.-.+-||.|++.+...+.
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~---------------------------------------------------- 112 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSD---------------------------------------------------- 112 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCc----------------------------------------------------
Confidence 8 55543221112379999999877631
Q ss_pred ccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 349 DRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 349 ~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
..+...|..+|..++ .+++-++.+.+.|+++.|...+.+ .+.....|...+.+++.......
T Consensus 113 ----------~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~------ 174 (543)
T PF05536_consen 113 ----------LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKS------ 174 (543)
T ss_pred ----------hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhh------
Confidence 023456788999997 577779999999999999999987 45566778888888874432110
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
..........++..+-+...... ...+...+..|.++-...
T Consensus 175 ~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 175 WAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRS 215 (543)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcC
Confidence 00011112234445544444332 444556677777666544
No 94
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.15 Score=50.19 Aligned_cols=232 Identities=18% Similarity=0.231 Sum_probs=135.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcc
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEK 321 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~ 321 (594)
+..+.+...+++...+...+..|..+.. ..+++.|+..|...+..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~------------------------ 82 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQE------------------------ 82 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccc------------------------
Confidence 4555555556666667777777776643 33788898888665311
Q ss_pred cccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCH
Q 040681 322 NSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG 401 (594)
Q Consensus 322 ~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~ 401 (594)
..++-.|+.||.++. .++ .++.+-++.+++..
T Consensus 83 -------------------------------------pmvRhEAaealga~~--~~~---------~~~~l~k~~~dp~~ 114 (289)
T KOG0567|consen 83 -------------------------------------PMVRHEAAEALGAIG--DPE---------SLEILTKYIKDPCK 114 (289)
T ss_pred -------------------------------------hHHHHHHHHHHHhhc--chh---------hHHHHHHHhcCCcc
Confidence 123566888888873 444 46777777766667
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChh---hHHHHHHHHHHHhcCCChhhH-HHHHHHHHHhhcCChhhhhcc
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPA---AKAVVDQLLRVINDLDSPTLQ-IPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~---~~~~v~~Ll~lL~s~~~~~v~-~~a~~aL~~La~~~~~~~~~~ 477 (594)
++++-+..+|..+............+.+....|+ ...-|..|-..|...+.+... ..|.-.|+|+- -...
T Consensus 115 ~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g------~Eea 188 (289)
T KOG0567|consen 115 EVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG------TEEA 188 (289)
T ss_pred ccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC------cHHH
Confidence 7887778888777533221110001011112222 222345555444444323332 34445555543 1245
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--ch-HhHhHH----HHHHHHHH
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--DR-TQLHGL----ALEQARVL 550 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~-vq~~Al----~l~~~~~l 550 (594)
|..|+.=|..++.-.|.+++..++.+-+ .-+|+.|.+.|... .+ |+.+|. .++....+
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s---------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~ 253 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQS---------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCV 253 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccc---------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHH
Confidence 7778888887888888899998888855 23678888877733 33 565554 44556667
Q ss_pred HHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 551 TALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 551 ~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
.+|....... ++.++.-..-|+..++.
T Consensus 254 ~vL~e~~~D~---~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 254 EVLKEYLGDE---ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHcCCc---HHHHHHHHHHHHHHHHH
Confidence 7776333322 45666666667776654
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.048 Score=62.52 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhCChh-H---HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh
Q 040681 217 SAAATALYNIANDQE-R---VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292 (594)
Q Consensus 217 e~A~~aL~~La~~~~-~---~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~ 292 (594)
..-.+||..|++.-+ . ...-..-|..|..+++|.+...+++---+-+-.++-..|+.||..+.+.+|-..++..|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 334567777776433 3 334447899999999999999999988888878887778899999999988888888775
Q ss_pred cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHh
Q 040681 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWML 372 (594)
Q Consensus 293 ~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L 372 (594)
.+. . + + .+-+.+|+.+|..+
T Consensus 565 ~~~--~----~--------------------------------------------------~----~EqrtmaAFVLAvi 584 (1387)
T KOG1517|consen 565 PSQ--A----I--------------------------------------------------P----PEQRTMAAFVLAVI 584 (1387)
T ss_pred CcC--C----C--------------------------------------------------C----HHHHHHHHHHHHHH
Confidence 531 0 0 0 13478899999999
Q ss_pred ccCChhhHHHHHhhCcHHHHHHHhhhC-CHHHHHHHHHHHHHH
Q 040681 373 ARGSVANSRRISETKGLLCLAKLVEKE-QGELQFNCLMTIMEI 414 (594)
Q Consensus 373 ~~~~~~~~~~i~e~g~l~~L~~LL~~~-~~~v~~~A~~aL~nL 414 (594)
+.+..--++...+.+.+......|.++ .+-++.-+|-+|..|
T Consensus 585 v~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 585 VRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 887776677777777777666777664 355555566666544
No 96
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.72 E-value=0.082 Score=58.61 Aligned_cols=251 Identities=20% Similarity=0.172 Sum_probs=145.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccC--chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hhHHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDN--DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND---QERVR 234 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~--~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~~~~ 234 (594)
..+-+|++.++.+|.+|+..+..++.-= -.--+.+...|.| |...|.... +++.-..+.||..+... ..-..
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeey-pEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCccc-HHHHHHHHHHHHHHHHhccccccCC
Confidence 3556889999999999999988876420 0001223333433 566777766 88776555555554431 11111
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH---hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL---AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
- -.+.+|.|.-+|++...+|++++...+..+|.+.++ .|+-++- ---|+++|...
T Consensus 880 P--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLkah----------------- 937 (1172)
T KOG0213|consen 880 P--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKAH----------------- 937 (1172)
T ss_pred C--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHH-----------------
Confidence 1 146789999999999999999999999999998765 2333321 22355555443
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
|..++++|...++.++.. |-=..++..
T Consensus 938 ----------------------------------------------kK~iRRaa~nTfG~Iaka-------IGPqdVLat 964 (1172)
T KOG0213|consen 938 ----------------------------------------------KKEIRRAAVNTFGYIAKA-------IGPQDVLAT 964 (1172)
T ss_pred ----------------------------------------------HHHHHHHHHhhhhHHHHh-------cCHHHHHHH
Confidence 124566777777776531 111123444
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|+.=|+..+...+....-+| +-+++.+ . -|- |++.|+.=.+... ..||--.+++|..+-....
T Consensus 965 LlnnLkvqeRq~RvcTtvaI---aIVaE~c----~-pFt--------VLPalmneYrtPe-~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 965 LLNNLKVQERQNRVCTTVAI---AIVAETC----G-PFT--------VLPALMNEYRTPE-ANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred HHhcchHHHHHhchhhhhhh---hhhhhhc----C-chh--------hhHHHHhhccCch-hHHHHhHHHHHHHHHHHHH
Confidence 44444443333333333333 2222222 1 122 6666664433222 5677667777766653222
Q ss_pred hhhh----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 472 ARET----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 472 ~~~~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.... -+.|.|-..|-+.+.--+.-|+.++..++-
T Consensus 1028 emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1028 EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1111 334666667888888888899999999876
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=1.5 Score=51.00 Aligned_cols=332 Identities=14% Similarity=0.108 Sum_probs=176.7
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHH
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIV 246 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv 246 (594)
.+++..+.-|+..+.-+. .|......++..|.+..|+.+|.+. |..++.+..+|+.|+.+++..+.-.+.|++..+.
T Consensus 1783 ~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil 1859 (2235)
T KOG1789|consen 1783 RKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALEHGGLMYIL 1859 (2235)
T ss_pred cCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhh
Confidence 466677777777665554 4577888899999999999999764 7889999999999999999877777889988888
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHhhcC---HH------------hHHHHHHcCChhhHHHhhhcCCcCCCcc-CccchhhH
Q 040681 247 NVLSD-SIMKVQIQVASLVARMAEHD---AL------------AQDDFARENVIRPLVTLLSFETFVDDPR-ANSGKQSI 309 (594)
Q Consensus 247 ~lL~~-~~~~v~~~aa~aL~~La~~~---~~------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~-~v~~~~si 309 (594)
.++-. .++.+|..++..+++|.... |. ..+.+++ +-+..|..+...+...+-. +......+
T Consensus 1860 ~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD--~PEAaVH~fE~T~EnPELiWn~~~r~kv 1937 (2235)
T KOG1789|consen 1860 SILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD--SPEAAVHMFESTSENPELIWNEVTRQKV 1937 (2235)
T ss_pred HHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc--CHHHHHHHHhccCCCcccccCHhHHHHH
Confidence 77754 48889999999999997532 11 1122222 2244555554332111000 00000000
Q ss_pred HHHHHHhhhhcccccc--cCCC-cccccchhccccCCCccccccccCC-hHHHH-HHHHHHHHHHHHhccCChhhHHHHH
Q 040681 310 HTIVQINKEMEKNSFV--GSKN-YRPYLYSEYCSSRSGQNRKDRENEK-PEVKI-KLKIACAEALWMLARGSVANSRRIS 384 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~--~~g~-~~~L~~~~~~~s~~~~~~~~~~~~d-p~~k~-~l~~~a~~aL~~L~~~~~~~~~~i~ 384 (594)
...+.. +..+.+. +.|. +..=++ .-+. | ..|.++ +.+.. .++.-...-=|+| .+| +. .
T Consensus 1938 S~~i~t---M~~~~y~~QQk~p~~~W~~P---EqsA-g----~~Ea~~E~aVGG~~~R~Fi~~P~f~L--R~P--k~--F 2000 (2235)
T KOG1789|consen 1938 SGIIDT---MVGKLYEQQQKDPTVKWNTP---EQSA-G----TSEADKECAVGGSINREFVVGPGFNL--RHP--KL--F 2000 (2235)
T ss_pred HHHHHH---HHHHHHHHhccCCcccccCc---hhhc-c----hhhhccCcccchhhhHHHhhCCCCcc--cCH--HH--H
Confidence 000000 0001111 0010 000000 0000 0 011111 00000 0000000000111 111 11 1
Q ss_pred hhCcHHHHHHHhhhCCHHH--HHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHH
Q 040681 385 ETKGLLCLAKLVEKEQGEL--QFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKS 462 (594)
Q Consensus 385 e~g~l~~L~~LL~~~~~~v--~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~a 462 (594)
-.+.++.+..++...+++- ..--.+++..|. ..+|.+... ++.-| -++.++..+.-.+ ..+-..|+++
T Consensus 2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~---r~hP~LADq--ip~LG----ylPK~~~Am~~~n-~s~P~SaiRV 2070 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELV---RHHPNLADQ--LPSLG----YLPKFCTAMCLQN-TSAPRSAIRV 2070 (2235)
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH---HhCcchhhh--CCCcc----chHHHHHHHHhcC-CcCcHHHHHH
Confidence 2356778888887655421 111222333232 455655552 33333 5666666665444 4444789999
Q ss_pred HHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 463 IGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 463 L~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
|..|+.+.--. +...+.+++..|...- +.-.-|+.+|..+.. .+ ..+-....+..|-||.|++||.+.
T Consensus 2071 lH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~-r~--~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2071 LHELSENQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMK-RN--TGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHhhccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHH-Hh--HHHHHHHHhccCcHHHHHHHhccc
Confidence 99998654211 1245667777775433 334478888888865 22 134445567889999999999854
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.39 E-value=0.046 Score=53.69 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred hcCCHHHHHHHHHHHHHhhccC--chhHHHHHhc--CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHHHHhcC
Q 040681 166 QMGQLSDRIEAAIELASLAKDN--DRNKKIIVEE--GGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRVIVSEL 240 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~--~~~~~~i~~~--g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~iv~~g 240 (594)
...+=+.|.+|+..|+.+..++ ......+.+. ..+..+...+.+.. ..+...|+.++..|+..-. .-... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 4567778899999999999886 3333443321 55677777887777 7888999999999986322 22222 234
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.+|+|++.+.++...+++.|..+|..++.+.
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 6899999999999999999999999998854
No 99
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.36 E-value=0.18 Score=57.44 Aligned_cols=268 Identities=13% Similarity=0.153 Sum_probs=143.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-Chh-HHHHHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQE-RVRVIV 237 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~-~~~~iv 237 (594)
.+++.+.+.|.+.|.-|..-|..-..++..+-+.=-+...+..|+++|.+.+ +++|..|+.+|+-|+. -++ ..+.++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~~v 87 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLETIV 87 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4566777777777877776665433221111111112356788999999988 9999999999999985 222 233332
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
+ .|+.-+-++....+.-+.-.|.-.-.+ .| .-..+....+.+.+...|.......
T Consensus 88 e-----~L~~~~~s~keq~rdissi~Lktvi~nl~P-~~~~~la~tV~~~~t~~l~~~i~~q------------------ 143 (1233)
T KOG1824|consen 88 E-----NLCSNMLSGKEQLRDISSIGLKTVIANLPP-SSSSFLAATVCKRITPKLKQAISKQ------------------ 143 (1233)
T ss_pred H-----HHhhhhccchhhhccHHHHHHHHHHhcCCC-ccccccccHHHHHHHHHHHHHhhhc------------------
Confidence 2 233332233333333333222222111 11 0011111222333333332221000
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
.++..++.+.....+..+.++..--++ ...+.+.+++--+
T Consensus 144 -----------------------------------e~~sai~~e~lDil~d~lsr~g~ll~~-----fh~~il~~l~~ql 183 (1233)
T KOG1824|consen 144 -----------------------------------EDVSAIKCEVLDILADVLSRFGTLLPN-----FHLSILKCLLPQL 183 (1233)
T ss_pred -----------------------------------ccchhhHHHHHHHHHHHHHhhcccCcc-----hHHHHHHHHhhcc
Confidence 011111222223333444444221122 2344566666667
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE-- 474 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-- 474 (594)
.+...-++..|+.+|..++....+ . +| ..+++.|++=|.....+....--+.+|+.+++....+-
T Consensus 184 ~s~R~aVrKkai~~l~~la~~~~~-----~-ly-------~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~ 250 (1233)
T KOG1824|consen 184 QSPRLAVRKKAITALGHLASSCNR-----D-LY-------VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS 250 (1233)
T ss_pred cChHHHHHHHHHHHHHHHHHhcCH-----H-HH-------HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc
Confidence 777788999999999988744321 1 22 34788888877766555555667778888886443221
Q ss_pred --hccHHHHHHhc---cCCCHHHHHHHHHHHHHhcC
Q 040681 475 --TRVIGPLVAHL---SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 --~~~i~~Lv~lL---~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++|.+.... ...+.+.++....++.-|..
T Consensus 251 h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 251 HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 15677777777 67778888888888777754
No 100
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.36 E-value=0.13 Score=57.14 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=98.1
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.+.+|.|.-+|++....+++|+...+.-|+.........|. . ..+-=.|+.+|+++. ..++..|..++|.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE-W--------MRIcfeLlelLkahk-K~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE-W--------MRICFELLELLKAHK-KEIRRAAVNTFGY 951 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH-H--------HHHHHHHHHHHHHHH-HHHHHHHHhhhhH
Confidence 45789999999999999999999999988844332222222 1 123345777888887 9999999999999
Q ss_pred hhcCChhhhhccHHHHHHhccCCCH-H----HHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhH
Q 040681 466 LARTFPARETRVIGPLVAHLSHRNQ-E----VATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQL 539 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~~~~~-~----v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~ 539 (594)
++. ..|--..|..||++-.. + |....+.++-.=.| +- ...+|.|+.=-+..+. ||.
T Consensus 952 Iak-----aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c-~p------------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 952 IAK-----AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-GP------------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred HHH-----hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc-Cc------------hhhhHHHHhhccCchhHHHH
Confidence 994 33444455555543222 2 22222222211111 11 2356666665555555 665
Q ss_pred hHH-----------HHHHH---HHHHHHhhhccccccccchHHHHHHHHHHhccccccc
Q 040681 540 HGL-----------ALEQA---RVLTALEGADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 540 ~Al-----------~l~~~---~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
--| +.+.. .+...|| ...+-.|+.-|.+-..++.++-|--.|
T Consensus 1014 GVLkalsf~FeyigemskdYiyav~Plle---DAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYAVTPLLE---DALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhHHHH---HhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 433 11111 1223334 122334777788888888888664334
No 101
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.31 E-value=0.47 Score=50.43 Aligned_cols=131 Identities=8% Similarity=0.118 Sum_probs=90.9
Q ss_pred HHHHHh-cCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh-cCCcCCCccCccchh
Q 040681 233 VRVIVS-ELGVPTIVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS-FETFVDDPRANSGKQ 307 (594)
Q Consensus 233 ~~~iv~-~g~i~~Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~v~~~~ 307 (594)
-+.+++ ...+..|..++++. .+.+-..|+.++..+-.++|.+-..+.+.|.++.+++.+. .+....
T Consensus 98 lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s--------- 168 (379)
T PF06025_consen 98 LRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPS--------- 168 (379)
T ss_pred cccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCc---------
Confidence 344555 44566677777765 6789999999999999999999999999999999999887 442110
Q ss_pred hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 308 si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
.++....-.+|..||- |..-.+.+.+.+
T Consensus 169 ---------------------------------------------------~e~l~~lP~~l~AicL-N~~Gl~~~~~~~ 196 (379)
T PF06025_consen 169 ---------------------------------------------------SEVLTSLPNVLSAICL-NNRGLEKVKSSN 196 (379)
T ss_pred ---------------------------------------------------HHHHHHHHHHHhHHhc-CHHHHHHHHhcC
Confidence 1223344567778874 677788899999
Q ss_pred cHHHHHHHhhhCCH--HHHH-HHHHH----HHHHHHHhcCCHHHHHH
Q 040681 388 GLLCLAKLVEKEQG--ELQF-NCLMT----IMEITAAAESNADLRRA 427 (594)
Q Consensus 388 ~l~~L~~LL~~~~~--~v~~-~A~~a----L~nL~~~~~~~~~~r~~ 427 (594)
.++.+++++.+.+- .++. ..+.. +-+|. .+++.+|..
T Consensus 197 ~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~---RH~p~Lk~~ 240 (379)
T PF06025_consen 197 PLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM---RHHPSLKPD 240 (379)
T ss_pred hHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH---ccCHHHHHH
Confidence 99999999976542 1211 22333 33333 677777763
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=1.7 Score=44.28 Aligned_cols=293 Identities=15% Similarity=0.090 Sum_probs=175.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHH--HHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHh
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPL--LKLLKETASSEAQSAAATALYNIAN-DQERVRVIVS 238 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~L--v~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~ 238 (594)
+..+-.+|.++-..|..+|..++.. +..-..|.+.....++ ..+--..+ .-++......+-.+.. ++++-...-.
T Consensus 134 ldcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 4455567888888889999999987 5555666666655544 33322223 4555556666666655 7777777778
Q ss_pred cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 239 ELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 239 ~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.|.+..|..=|+. .+.-|+.++......|+.. ...++.+.+.|.|..+..++...+....+ .++.+
T Consensus 212 SGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfe-------kfral----- 278 (524)
T KOG4413|consen 212 SGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFE-------KFRAL----- 278 (524)
T ss_pred hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHH-------HHHHH-----
Confidence 8888888777765 4777899999999999874 36788888888888888877543210000 01111
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc---CChhhHHHHHhhCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR---GSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~---~~~~~~~~i~e~g~l~~L~~ 394 (594)
|. -.+-+.+.+. ....+|+...- ++..-..
T Consensus 279 ----------------mg-----------------------------fgkffgkeaimdvseeaicealii--aidgsfE 311 (524)
T KOG4413|consen 279 ----------------MG-----------------------------FGKFFGKEAIMDVSEEAICEALII--AIDGSFE 311 (524)
T ss_pred ----------------HH-----------------------------HHHHhcchHHhhcCHHHHHHHHHH--HHHhhHH
Confidence 00 0111111111 11233333221 3555566
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC---h
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF---P 471 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~---~ 471 (594)
+++..+++.+..|..++..+.+-.++.. + ..++..|+.+ ..+.+....+ ...-++.++.+|.+++.-. +
T Consensus 312 miEmnDpdaieaAiDalGilGSnteGad-l---llkTgppaae---hllarafdqn-ahakqeaaihaLaaIagelrlkp 383 (524)
T KOG4413|consen 312 MIEMNDPDAIEAAIDALGILGSNTEGAD-L---LLKTGPPAAE---HLLARAFDQN-AHAKQEAAIHALAAIAGELRLKP 383 (524)
T ss_pred hhhcCCchHHHHHHHHHHhccCCcchhH-H---HhccCChHHH---HHHHHHhccc-ccchHHHHHHHHHHhhccccCCh
Confidence 7788899999999999988764444332 1 1122223322 2334443322 2667888899999988522 1
Q ss_pred hhhh----------------------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHH-HcCChHHHH
Q 040681 472 ARET----------------------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII-EFNAVPPLM 528 (594)
Q Consensus 472 ~~~~----------------------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~-~~g~i~~Lv 528 (594)
...+ .-...+...+....+++.-.|...+..++. . +=..+.|. ..|.|...+
T Consensus 384 eqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa-q----PWalkeifakeefieiVt 458 (524)
T KOG4413|consen 384 EQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA-Q----PWALKEIFAKEEFIEIVT 458 (524)
T ss_pred hhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc-C----cHHHHHHhcCccceeeec
Confidence 1111 113445556677899999999999988876 2 33445554 444444443
Q ss_pred H
Q 040681 529 R 529 (594)
Q Consensus 529 ~ 529 (594)
+
T Consensus 459 D 459 (524)
T KOG4413|consen 459 D 459 (524)
T ss_pred c
Confidence 3
No 103
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.20 E-value=0.17 Score=57.70 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=52.4
Q ss_pred HHHHHH-HHHhcCCChhhHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 439 VVDQLL-RVINDLDSPTLQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 439 ~v~~Ll-~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.+..|+ .+.....++.++.-|.-.||.+-+..+.. +.+.-..+++.+++.+.+|+.+|+.||++++. ||
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v-gn 888 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV-GN 888 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc-Cc
Confidence 444444 34444455888999999999998755433 33566788899999999999999999999988 55
No 104
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.037 Score=59.23 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCC
Q 040681 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSI 253 (594)
Q Consensus 175 ~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~ 253 (594)
.++..|.++++.-...|.-+.+...+.+|+++|+.++ ..+.--+..+++|+.. ...-+..+.+.|.|..|+.++.+.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 3445566776654556667778889999999999877 6677778889999876 5556888889999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChhhHHHhhhcC
Q 040681 254 MKVQIQVASLVARMAEHDA-LAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 254 ~~v~~~aa~aL~~La~~~~-~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
..+|.+..|.++.+.-+.. ..+-.+....++..++++++++
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp 528 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP 528 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc
Confidence 8999999999999876543 2344555667889999988665
No 105
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.12 E-value=0.95 Score=47.98 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCChhHHHHHHhcCCH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIANDQERVRVIVSELGV 242 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i 242 (594)
.+-+++.++|..|.+.++.+..+ +..-+.+.+.+.=-.++.-|... ++..-+++|...++.+..-+..... +..|.+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHH
Confidence 44455688998899999988877 67777777777555555555443 3366788999988887764333222 256778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 243 PTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 243 ~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
..+|.+.++.+...+..|..+|..++-.+| +.+..+||++.|+..+.++
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhc
Confidence 899999999999999999999999998776 6778899999999998765
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.92 E-value=0.16 Score=55.42 Aligned_cols=254 Identities=17% Similarity=0.132 Sum_probs=146.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hh
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKD--NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND---QE 231 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~--~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~ 231 (594)
.|-..+..|++..+.+|.+|+....+++.- +-.-.+.+...|.| |..-|.... +++.-....|++.+... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDY-PEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence 355567789999999999999888877642 00111333334433 455566656 88876666666666541 11
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH---hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL---AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 232 ~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
-..- -.|.+|.|.-+|++...+++.+....+..+|.+.|+ .|+-++- ---|++.|.+.
T Consensus 682 mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~-------------- 742 (975)
T COG5181 682 MQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSW-------------- 742 (975)
T ss_pred cCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHh--------------
Confidence 1112 257899999999999999999999999999998775 2222221 12344444333
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCc
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKG 388 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~ 388 (594)
+.+++++|...++.++.. |--..+
T Consensus 743 -------------------------------------------------nKeiRR~A~~tfG~Is~a-------iGPqdv 766 (975)
T COG5181 743 -------------------------------------------------NKEIRRNATETFGCISRA-------IGPQDV 766 (975)
T ss_pred -------------------------------------------------hHHHHHhhhhhhhhHHhh-------cCHHHH
Confidence 124567777777766431 111124
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
+..|+.=|+..+...+....-+|.- +++.+ . -|- +++.|+.=..... ..||--.++++..+-.
T Consensus 767 L~~LlnnLkvqeRq~RvctsvaI~i---Vae~c----g-pfs--------VlP~lm~dY~TPe-~nVQnGvLkam~fmFe 829 (975)
T COG5181 767 LDILLNNLKVQERQQRVCTSVAISI---VAEYC----G-PFS--------VLPTLMSDYETPE-ANVQNGVLKAMCFMFE 829 (975)
T ss_pred HHHHHhcchHHHHHhhhhhhhhhhh---hHhhc----C-chh--------hHHHHHhcccCch-hHHHHhHHHHHHHHHH
Confidence 4555554544444444433333322 22211 1 121 6666664333222 5566666666655543
Q ss_pred CChhhhh---c-cHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 469 TFPARET---R-VIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 469 ~~~~~~~---~-~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
....... . +.|.|-..|.+.++--+.-|+..+..++-
T Consensus 830 yig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 830 YIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 2211111 2 33555567888888888889999998865
No 107
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.86 E-value=3.4 Score=45.16 Aligned_cols=289 Identities=13% Similarity=0.132 Sum_probs=160.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc----cCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK----ETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~----~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
.|.+..+.....|+..+..++.-. +-.+.-|-|+.-+. ++....++.+++.++++.+...+....+-..
T Consensus 102 aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 102 ALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 445555566666777777666532 12355666655443 3344678889999999998743332222222
Q ss_pred CC--HHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 240 LG--VPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 240 g~--i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
+. +......++.+ +..+|-.+..+|.+-+. ..|..|...+-...+++..-.-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceat--------------------- 230 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEAT--------------------- 230 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhc---------------------
Confidence 22 23333345555 67788888888887433 34444443333333332211111
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..+| .+++..+..+|..+-.-.-...+...|.-......+.+
T Consensus 231 ----------------------------------q~~d----~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m 272 (858)
T COG5215 231 ----------------------------------QGND----EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM 272 (858)
T ss_pred ----------------------------------cCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112 23455666666665433333344444444445555667
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHH--HHHHhhhcCChh---------hHHHHHHHHHHHhcC------CChhhHHHH
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNAD--LRRAAFKTNSPA---------AKAVVDQLLRVINDL------DSPTLQIPA 459 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~--~r~~~~~~~~~~---------~~~~v~~Ll~lL~s~------~~~~v~~~a 459 (594)
.+.++++...|...=+-+| +...+ +-. ...+..|+ +..+++.|+++|... |++.+-..|
T Consensus 273 ks~nd~va~qavEfWstic---eEeid~~~e~-~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 273 KSQNDEVAIQAVEFWSTIC---EEEIDGEMED-KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred cCcchHHHHHHHHHHHHHH---HHHhhhHHHH-hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 7788888776665544444 22111 111 11222222 456899999999872 346677777
Q ss_pred HHHHHHhhcCChhhhhccHHHHHHh----ccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 460 IKSIGSLARTFPARETRVIGPLVAH----LSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 460 ~~aL~~La~~~~~~~~~~i~~Lv~l----L~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
..+|--.+..- ...++.+.... +.+.++.-+..|+.|++..-.+.+ ......++ ..++|.+..+..
T Consensus 349 ~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~---~~~lT~~V-~qalp~i~n~m~ 418 (858)
T COG5215 349 SSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPC---EDCLTKIV-PQALPGIENEMS 418 (858)
T ss_pred HHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCcc---HHHHHhhH-HhhhHHHHHhcc
Confidence 77776666321 12344554444 478899999999999999866333 44444444 346777777665
No 108
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.13 Score=55.16 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=94.3
Q ss_pred HHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHH
Q 040681 365 CAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLL 444 (594)
Q Consensus 365 a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll 444 (594)
+..+++|+.......+..+.+.|.+..|++++.+.+..+|.++.|.+..+.-....+..++ |. ++-+++.++
T Consensus 451 ~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~---~L-----akig~~kvl 522 (743)
T COG5369 451 DTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK---FL-----AKIGVEKVL 522 (743)
T ss_pred chhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh---hH-----HhcCHHHHH
Confidence 3556677655555667788999999999999999899999999999998864444443221 22 344788889
Q ss_pred HHHhcCCChhhHHHHHHHHHHhhcCChhhhh------------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 445 RVINDLDSPTLQIPAIKSIGSLARTFPARET------------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 445 ~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~------------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+.+... ..+++.+...|+|+.-+....+. -....|+..+...++--..+.+..|-+++.
T Consensus 523 ~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa 594 (743)
T COG5369 523 SYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAA 594 (743)
T ss_pred HHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHh
Confidence 8887555 89999999999999863332211 235667777777777666666777777655
No 109
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=2.2 Score=45.14 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=86.9
Q ss_pred HHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hh-------HHHHHHhcCCHHHH
Q 040681 176 AAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND---QE-------RVRVIVSELGVPTI 245 (594)
Q Consensus 176 Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~-------~~~~iv~~g~i~~L 245 (594)
....+..++.. |..--.+++.++|+.|+.||.+.+ .++-...+..|..|... .+ -...+++.++++.|
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 44556666766 777788999999999999999988 89998889999888752 12 14678889999999
Q ss_pred HHhhcCCCHH------HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 246 VNVLSDSIMK------VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 246 v~lL~~~~~~------v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
++-++.-+.. -..++...+-||....+.....+++.|.+..|+.-+
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl 233 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRL 233 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHH
Confidence 9988654333 445667778888888777777878877777766644
No 110
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=5.4 Score=44.71 Aligned_cols=327 Identities=15% Similarity=0.143 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.-.+-+.+|++.-...|.-.-..+.-+...|.+.-+.+ +..+.+=|.+.+ +.-+..|+.+++|+..- +.++.+
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn-~~fv~LAL~~I~niG~r-e~~ea~ 147 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRN-PTFVCLALHCIANIGSR-EMAEAF 147 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCC-cHHHHHHHHHHHhhccH-hHHHHh
Confidence 33455666766665566555555554554443333333 233444455556 78888899999998762 344444
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccc-hh-hHHHH
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSG-KQ-SIHTI 312 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~-~~-si~~l 312 (594)
.. -|| ++|.++ ..-|+..+|-+|..|-..+|+ .+.-.+-...++.+|.+.. -. |.. .. -|..+
T Consensus 148 ~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~----~g-v~ta~~sLi~~l 214 (938)
T KOG1077|consen 148 AD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQH----MG-VVTAATSLIEAL 214 (938)
T ss_pred hh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccc----cc-eeeehHHHHHHH
Confidence 22 233 777777 345899999999999876653 3322345778888886552 11 111 01 12222
Q ss_pred HHHhhhhcccccccCCCcccccchh-ccccCCCcccccc-ccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSE-YCSSRSGQNRKDR-ENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGL 389 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~-~~~s~~~~~~~~~-~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l 389 (594)
+..+...-. +.+++-+.-+ +.....|+...+. .+--|. .++....++.|.+.-... +..+.. .+
T Consensus 215 vk~~p~~yk------~~~~~avs~L~riv~~~~t~~qdYTyy~vP~--PWL~vKl~rlLq~~p~~~D~~~r~~-----l~ 281 (938)
T KOG1077|consen 215 VKKNPESYK------TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPA--PWLQVKLLRLLQIYPTPEDPSTRAR-----LN 281 (938)
T ss_pred HHcCCHHHh------hhHHHHHHHHHHHHhhcccchhhceeecCCC--hHHHHHHHHHHHhCCCCCCchHHHH-----HH
Confidence 211111100 0000000000 0000000000000 000011 245666677776653211 222322 23
Q ss_pred HHHHHHhhhCC-----HHHH-HHHHHHHH----HHH-HHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHH
Q 040681 390 LCLAKLVEKEQ-----GELQ-FNCLMTIM----EIT-AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIP 458 (594)
Q Consensus 390 ~~L~~LL~~~~-----~~v~-~~A~~aL~----nL~-~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~ 458 (594)
++|-.+|...+ .+++ .+|-.++. ++. -+.+... .....+.+|-.+|.+.. ..++--
T Consensus 282 evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~------------ll~~~~~~Lg~fls~rE-~NiRYL 348 (938)
T KOG1077|consen 282 EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE------------LLSRAVNQLGQFLSHRE-TNIRYL 348 (938)
T ss_pred HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH------------HHHHHHHHHHHHhhccc-ccchhh
Confidence 44444443222 1233 23333321 111 1111111 12236677777777555 888888
Q ss_pred HHHHHHHhhcCChhhhh--ccHHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 459 AIKSIGSLARTFPARET--RVIGPLVAHLS-HRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 459 a~~aL~~La~~~~~~~~--~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
|...+..|+......+. .-...++..|+ +++..+++.|+-.|..|+- +++.+.|++ -|++-|...|
T Consensus 349 aLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD------~~Nak~IV~-----elLqYL~tAd 417 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD------VSNAKQIVA-----ELLQYLETAD 417 (938)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc------hhhHHHHHH-----HHHHHHhhcc
Confidence 88888888876543322 23677888887 8999999999999999965 566776654 4677777676
Q ss_pred h-HhHh
Q 040681 536 R-TQLH 540 (594)
Q Consensus 536 ~-vq~~ 540 (594)
. +|.+
T Consensus 418 ~siree 423 (938)
T KOG1077|consen 418 YSIREE 423 (938)
T ss_pred hHHHHH
Confidence 6 5543
No 111
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.15 Score=57.17 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 154 MLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 154 i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
+.....+.+...++.|.+.|.-.--+|.+.+...+.. ..++|..+++=.++++ +.++..|.+.++.+-.+ ...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~-~i~ 119 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD-KIT 119 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh-HHH
Confidence 3345567788888899888888888899999886654 2356777777777777 89998888877766442 222
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
.. .+.++.+.+++.++.+|..++-.+.++-. ...+.+.+.|.+..|-+++.+.
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC
Confidence 22 46789999999999999999999999854 3457777888899999988744
No 112
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=4.1 Score=43.24 Aligned_cols=255 Identities=12% Similarity=0.111 Sum_probs=157.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-----cCc----hhHHHHHhcCChHHHHHhhccCC-----CHHHHHHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAK-----DND----RNKKIIVEEGGVPPLLKLLKETA-----SSEAQSAAATA 222 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-----~~~----~~~~~i~~~g~I~~Lv~LL~~~~-----~~~v~e~A~~a 222 (594)
.|..++.+|.+++.+.-...+.-|..+.. ++. ..-..+++.+.++.|++-+..-+ ......++...
T Consensus 126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v 205 (536)
T KOG2734|consen 126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV 205 (536)
T ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence 35567777777777776666666666543 222 23456677788999988765432 24556677888
Q ss_pred HHHhhC-ChhHHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCC
Q 040681 223 LYNIAN-DQERVRVIVSELGVPTIVNVLSD--SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDD 299 (594)
Q Consensus 223 L~~La~-~~~~~~~iv~~g~i~~Lv~lL~~--~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 299 (594)
+-|+.. +++....+++.|.+..|++-+.. +-..-+..|..+|+-+-+++.+++......+|+..|+.-+.--.- .+
T Consensus 206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~-~d 284 (536)
T KOG2734|consen 206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR-HD 284 (536)
T ss_pred HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc-cC
Confidence 889887 77788888888888877774432 234457788899999988877788888888888888776532100 00
Q ss_pred ccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhh
Q 040681 300 PRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVAN 379 (594)
Q Consensus 300 ~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~ 379 (594)
+ ...+. .++-++...+|+.+- -.+++
T Consensus 285 P-------------------------------------------------~~~~E----~EmmeNLFdcLCs~l-m~~~n 310 (536)
T KOG2734|consen 285 P-------------------------------------------------ATVDE----EEMMENLFDCLCSLL-MAPAN 310 (536)
T ss_pred C-------------------------------------------------CCcCH----HHHHHHHHHHHHHHh-cChhh
Confidence 0 00000 234455555666553 46788
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh-----cCCChh
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN-----DLDSPT 454 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~-----s~~~~~ 454 (594)
+..+....++....-+++. ..-.+..+..+|-.+..+.++.+.+-+ |+. .++.+.+.+..++.=. .....+
T Consensus 311 r~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~k--fVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e 386 (536)
T KOG2734|consen 311 RERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNK--FVE-ILGLRTIFPLFMKTPLKRKKRKISADE 386 (536)
T ss_pred hhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHH--HHH-HHhHHHHHHHHhhCccchhcccCcHHH
Confidence 9999888888755555543 555667788888888866665554433 342 2222333333331100 011145
Q ss_pred hHHHHHHHHHHhhcCC
Q 040681 455 LQIPAIKSIGSLARTF 470 (594)
Q Consensus 455 v~~~a~~aL~~La~~~ 470 (594)
.-+..+..|++|-++-
T Consensus 387 ~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 387 HEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5677777777776533
No 113
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.48 E-value=0.34 Score=55.17 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=104.4
Q ss_pred HHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHH
Q 040681 365 CAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLL 444 (594)
Q Consensus 365 a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll 444 (594)
.-+.|..+..|++ ... .++-+++.+.+.+.+++.-.--=|.+. ++.+|+... . .++.+.
T Consensus 40 mK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~y---ak~~P~~~l---L--------avNti~ 98 (757)
T COG5096 40 MKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERY---AKLKPELAL---L--------AVNTIQ 98 (757)
T ss_pred HHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHH---hccCHHHHH---H--------HHHHHH
Confidence 3456777877765 121 356666777778888887554445444 477774433 1 667777
Q ss_pred HHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCCh
Q 040681 445 RVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524 (594)
Q Consensus 445 ~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i 524 (594)
+=+.+.+ +.+|..|+++++.|-. +..-..+++++.++++++++.||+.|+.|+.++=. -....+.+.|.+
T Consensus 99 kDl~d~N-~~iR~~AlR~ls~l~~--~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-------ld~~l~~~~g~~ 168 (757)
T COG5096 99 KDLQDPN-EEIRGFALRTLSLLRV--KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-------LDKDLYHELGLI 168 (757)
T ss_pred hhccCCC-HHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-------cCHhhhhcccHH
Confidence 7766554 9999999999998852 22223678999999999999999999999999843 123345577888
Q ss_pred HHHHHhccCCch-HhHhHH
Q 040681 525 PPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 525 ~~Lv~lL~~~~~-vq~~Al 542 (594)
.++..++...++ |..+|+
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 169 DILKELVADSDPIVIANAL 187 (757)
T ss_pred HHHHHHhhCCCchHHHHHH
Confidence 899999988888 666666
No 114
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.44 E-value=1.8 Score=43.88 Aligned_cols=232 Identities=17% Similarity=0.150 Sum_probs=141.3
Q ss_pred hhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC-CHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHc-
Q 040681 206 LLKETASSEAQSAAATALYNIANDQERVRVIVSEL-GVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARE- 281 (594)
Q Consensus 206 LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g-~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~- 281 (594)
+++.-+ +-.+.-|+.+|.++..+++.|..+-.++ .-..++.+++.. +..+|-+..-+++-|+- ++++.+.+-..
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 444445 6688889999999999999988877555 445678888776 67889999999999986 55666444331
Q ss_pred CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHH
Q 040681 282 NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKL 361 (594)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l 361 (594)
..+.-|+.+.+.. +|.++
T Consensus 235 dli~dli~iVk~~--------------------------------------------------------------~keKV 252 (432)
T COG5231 235 DLINDLIAIVKER--------------------------------------------------------------AKEKV 252 (432)
T ss_pred HHHHHHHHHHHHH--------------------------------------------------------------HHHHH
Confidence 2345555554332 12345
Q ss_pred HHHHHHHHHHhccCC-hhhHHHH-HhhCcHHHHHHHhhhC--CHHHHHHH---HHHHHH----HHHHh-------c----
Q 040681 362 KIACAEALWMLARGS-VANSRRI-SETKGLLCLAKLVEKE--QGELQFNC---LMTIME----ITAAA-------E---- 419 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~-~~~~~~i-~e~g~l~~L~~LL~~~--~~~v~~~A---~~aL~n----L~~~~-------~---- 419 (594)
-+.++..+.|++... ...-..+ ...++.++.-.|++.+ ++++...- -..|-+ +|... .
T Consensus 253 ~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~ 332 (432)
T COG5231 253 LRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLE 332 (432)
T ss_pred HHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCccc
Confidence 566777777776422 1222223 3333444444444432 33333211 111110 11000 0
Q ss_pred -CCH--------HHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhc
Q 040681 420 -SNA--------DLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHL 485 (594)
Q Consensus 420 -~~~--------~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL 485 (594)
..+ +.-+ .+..+ --.++..|.+++++..+.....-|+.-|+.+.+..|.. ..|+=..+..++
T Consensus 333 wSp~H~~~dFWs~N~d-~l~kd---ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~ 408 (432)
T COG5231 333 WSPYHHKKDFWSTNLD-MLIKD---NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLI 408 (432)
T ss_pred CCCcccccCchhhhHH-HHhhh---hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHh
Confidence 000 0001 01111 13578899999998875556778888899998876643 348889999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC
Q 040681 486 SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 486 ~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+++++|+.+|..|+..+.+
T Consensus 409 nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 409 NHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred cCCCchhhHHHHHHHHHHHh
Confidence 99999999999999877644
No 115
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.41 E-value=1 Score=46.62 Aligned_cols=109 Identities=25% Similarity=0.144 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hhH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE--EGGVPPLLKLLKETASSEAQSAAATALYNIAND---QER 232 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~--~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~~ 232 (594)
+.+.|..+.......|..|+..|.++..... ....+.+ .-.+..+.+.++.++ .+-+..|+.+++.++-. .+.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence 5567778877788999999999998886532 2233322 234777888888888 66677788888887753 234
Q ss_pred HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhh
Q 040681 233 VRVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAE 269 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~ 269 (594)
...+++ ...|+|.+++.++ ++.+|..++.+|+-++.
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 455554 4688999999877 56677777777776654
No 116
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=3.9 Score=46.35 Aligned_cols=265 Identities=20% Similarity=0.199 Sum_probs=162.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-hccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHh
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASL-AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVS 238 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~l-a~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~ 238 (594)
+|..+|.+.....+.+|+.-|..+ +++.+ . ....|..|+...+.+ .+++...---|...|..+.+-.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA---- 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA---- 106 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce----
Confidence 577889998889999999877554 55532 1 234678888888887 8998877666666665322211
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHh-hhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 239 ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL-LSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.=-|..+=+-|+++++.+|..|.++|+.+=. ..|.|++-+ ++..
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRv------------p~IaPI~llAIk~~----------------------- 151 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRV------------PMIAPIMLLAIKKA----------------------- 151 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch------------hhHHHHHHHHHHHH-----------------------
Confidence 1247788888999999999888877766522 123333322 1111
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..||+ ..++..|+.||-.|-+-+++.... .+.++-.||.
T Consensus 152 ----------------------------------~~D~s--~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLa 190 (968)
T KOG1060|consen 152 ----------------------------------VTDPS--PYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLA 190 (968)
T ss_pred ----------------------------------hcCCc--HHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhc
Confidence 01111 256788899998887666664443 3567778888
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh---
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--- 474 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--- 474 (594)
+.++-|.-.|++|.-++| -++-++-.- =-..|.++|...+.+ -|...+..|..-||..=...
T Consensus 191 D~splVvgsAv~AF~evC---PerldLIHk-----------nyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~ 255 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVC---PERLDLIHK-----------NYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVV 255 (968)
T ss_pred CCCCcchhHHHHHHHHhc---hhHHHHhhH-----------HHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCcccc
Confidence 888888888888887776 333322221 122344444333322 24445555555554220000
Q ss_pred ---------------------h---------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCCh
Q 040681 475 ---------------------T---------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524 (594)
Q Consensus 475 ---------------------~---------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i 524 (594)
+ -.+...-.+|.+.++.|...+|.+...++- .+.. ...+
T Consensus 256 ~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP------~~~~-----~~i~ 324 (968)
T KOG1060|consen 256 DSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP------KNQV-----TKIA 324 (968)
T ss_pred ccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC------HHHH-----HHHH
Confidence 0 012222235578899999999999999876 2222 2347
Q ss_pred HHHHHhccCCchHh
Q 040681 525 PPLMRLLRGNDRTQ 538 (594)
Q Consensus 525 ~~Lv~lL~~~~~vq 538 (594)
++|+++|+++..+|
T Consensus 325 kaLvrLLrs~~~vq 338 (968)
T KOG1060|consen 325 KALVRLLRSNREVQ 338 (968)
T ss_pred HHHHHHHhcCCcch
Confidence 89999999876543
No 117
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.98 E-value=0.068 Score=56.54 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhccCChhhH---HHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhh-hcC
Q 040681 358 KIKLKIACAEALWMLARGSVANS---RRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAF-KTN 432 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~---~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~-~~~ 432 (594)
+.+++.++.++|.|+..--..+. -..++.+.+..+..-. -.+.-.+|.|+|.++.||. .|+ +| ..+
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf----kn~-----a~~lq~ 567 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF----KNP-----ALPLQT 567 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh----cCc-----cccccC
Confidence 35678889999998742111111 1112233333222221 2244579999999999997 454 34 455
Q ss_pred ChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 433 SPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 433 ~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+.+..+.+.|..++.++.+-.++..|+.+|.--.
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 66777889999999998888889999988886655
No 118
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.46 Score=53.10 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
+..-.+++...+..-++ +.+.+++.|++.+.+.++..-...+..+.+.- +..|.+|.. .++
T Consensus 376 RqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~i---ek~p~Lr~~-----------ii~ 436 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAI---EKFPNLRAS-----------IIE 436 (948)
T ss_pred HHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---HhCchHHHH-----------HHH
Confidence 44556777777766676 34456899999998877765444444444433 677777774 444
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcC
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLART 469 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~ 469 (594)
.|+.-+..-.+..+-..|++.+|.-|..
T Consensus 437 ~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 437 KLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred HHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 4544443333345556666666666643
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.97 E-value=0.7 Score=45.25 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccCC--hhhHHHHHh--hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 362 KIACAEALWMLARGS--VANSRRISE--TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~--~~~~~~i~e--~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
+..+..-|..+..++ ......+.+ ...+..+...+.+....+...|+.++..|+...... |. +...
T Consensus 24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-------~~---~~~~ 93 (228)
T PF12348_consen 24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-------FE---PYAD 93 (228)
T ss_dssp HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-------GH---HHHH
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-------HH---HHHH
Confidence 455666677766555 222222221 134566666676666678888999998887443221 21 1245
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc-HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV-IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~-i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
.+++.|++.+.+.. ..++..|..+|..++...+ ....+ .+.+...+.++++.++..++..|..+....+.-......
T Consensus 94 ~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 68888998887665 7889999999999996543 12234 677777889999999999999998886521100011111
Q ss_pred HHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 517 AIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 517 ~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
...-...++.+.+++..+++ |+..|-
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar 198 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAAR 198 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 11112356778888888888 887765
No 120
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.87 E-value=0.13 Score=43.37 Aligned_cols=90 Identities=24% Similarity=0.274 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH--hcCCHHHHHHhhc
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV--SELGVPTIVNVLS 250 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv--~~g~i~~Lv~lL~ 250 (594)
|.-++.+|...+..-....... -.-.+||++..+.+.+ ..++..|+.+|.|++..- +..+. -......|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQD-SRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 4455666666655433321111 1346899999999998 999999999999998632 22332 2346788889999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 040681 251 DSIMKVQIQVASLVARM 267 (594)
Q Consensus 251 ~~~~~v~~~aa~aL~~L 267 (594)
+.++.|+. +++.|-+|
T Consensus 79 D~d~~Vr~-~a~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRS-AAELLDRL 94 (97)
T ss_pred CCchhHHH-HHHHHHHH
Confidence 99999887 44666655
No 121
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.59 E-value=0.36 Score=48.05 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh-CChhHHHHHHhcCCHHHHHHhhc
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNVLS 250 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La-~~~~~~~~iv~~g~i~~Lv~lL~ 250 (594)
....|+..|..++--++..+..+.+..++..|+.+|.....+.++..+..+|..+- .++.+.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888888889999999999999999999965544889988888777654 57889999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHHhh
Q 040681 251 DS--IMKVQIQVASLVARMAE 269 (594)
Q Consensus 251 ~~--~~~v~~~aa~aL~~La~ 269 (594)
+. +.+++-++...|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 67787777777765543
No 122
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.58 E-value=9.1 Score=43.97 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=97.2
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh
Q 040681 151 NDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 151 ~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~ 230 (594)
.+++..+..+.+....+.|.+.|+--=-+|...++.+|.- ++. ++..+.+=|++++ +.+|-.|.++++.+-. +
T Consensus 50 G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~-~ 122 (757)
T COG5096 50 GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV-K 122 (757)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh-H
Confidence 3445456667777777889999988888899998887632 221 4677788888898 9999999888887643 2
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 231 ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 231 ~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+--. ..++++.+++.++++.||..|+-++.++-+.+ .+.+.+.|.+..+..++.+.
T Consensus 123 el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 123 ELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCC
Confidence 2222 35889999999999999999999999997655 35666677777777777554
No 123
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.54 E-value=1.2 Score=48.96 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=60.4
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.|.+|.|.-+|++....++.|....+.-||..+......|. . ..+-=.|+..|++.+ .+++..|..++|+
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rE-W--------MRIcfeLvd~Lks~n-KeiRR~A~~tfG~ 756 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE-W--------MRICFELVDSLKSWN-KEIRRNATETFGC 756 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHH-H--------HHHHHHHHHHHHHhh-HHHHHhhhhhhhh
Confidence 56899999999999999999999999888855443333333 1 123334666777666 9999999999999
Q ss_pred hhcCChhhhhccHHHHHHhcc
Q 040681 466 LARTFPARETRVIGPLVAHLS 486 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~ 486 (594)
+++. .|--..|.-+|+
T Consensus 757 Is~a-----iGPqdvL~~Lln 772 (975)
T COG5181 757 ISRA-----IGPQDVLDILLN 772 (975)
T ss_pred HHhh-----cCHHHHHHHHHh
Confidence 9953 333344444553
No 124
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=2.5 Score=46.09 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=125.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE-EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~-~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
|..+|...+.++|..+=.+|.+.... -++.-...+ ...++.|+.=+.+++ +.+|..|..-|..+..-+...-...-.
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s 290 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLS 290 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 56677778888886655544443221 001111112 245788888899998 999999988888776633322222245
Q ss_pred CCHHHHHHhhcCCCH-HHHHHHHH---HHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 240 LGVPTIVNVLSDSIM-KVQIQVAS---LVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~-~v~~~aa~---aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
|.+..+..++.+.++ .+++.+.. .|..+++ .+.....+.-...+..|...+.++.
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~-------------------- 349 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDR-------------------- 349 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcch--------------------
Confidence 666666667766533 34444333 3444443 2222222211112334444443321
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
.+.+..+..=+..|-. +..++-........+.|++-
T Consensus 350 -------------------------------------------~~tri~~L~Wi~~l~~-~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 350 -------------------------------------------EETRIAVLNWIILLYH-KAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHh-hCcchhhhhccHHHHHHHHh
Confidence 0113333333333322 22223334455678999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
|.+.++++...++..+++||.-. +.+..++ ++..|+.+..... .-+...+.-.++.||.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~-~~~~~~~------------fl~sLL~~f~e~~-~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSS-NSPNLRK------------FLLSLLEMFKEDT-KLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCc-ccccHHH------------HHHHHHHHHhhhh-HHHHhhhhHHHHHHHH
Confidence 99999999999999999998222 2222333 5666776665433 5555677777777774
No 125
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.34 E-value=1.6 Score=40.22 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=88.9
Q ss_pred HHHHhhCcHHHHHHHhhhCC------HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC-Ch
Q 040681 381 RRISETKGLLCLAKLVEKEQ------GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD-SP 453 (594)
Q Consensus 381 ~~i~e~g~l~~L~~LL~~~~------~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~-~~ 453 (594)
..++..+|+..|+++++++. +++...++.+..+|- ++...--. -....+|..+..++.... +.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLM---eHg~vsWd-------~l~~~FI~Kia~~Vn~~~~d~ 74 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELM---EHGIVSWD-------TLSDSFIKKIASYVNSSAMDA 74 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHH---hcCcCchh-------hccHHHHHHHHHHHccccccc
Confidence 45678899999999999877 355666777777765 43321111 013458888898888665 47
Q ss_pred hhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 040681 454 TLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII 519 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~ 519 (594)
.+...|+..|-++..+.+..- .=-++.|+..|...+++++..|...+..+-...+ .+.++.+.
T Consensus 75 ~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~---~~~r~~i~ 142 (160)
T PF11841_consen 75 SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD---DSKRKEIA 142 (160)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC---hHHHHHHH
Confidence 889999999999998766421 1247999999999999999999887777655222 34444443
No 126
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.34 E-value=4.1 Score=43.34 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cC--CCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ET--ASSEAQSAAATALYNIANDQERVRVIVSELGVPTI 245 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~--~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~L 245 (594)
.+..-..|+..+..+..++|..-..+.+.|.++.+++-+. .+ .+.++....-.+|+.||.+.+..+.+.+.+.++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 4567788899999999998999899999999999999887 33 23788888888999999999999999999999999
Q ss_pred HHhhcCCC-------HHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 246 VNVLSDSI-------MKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 246 v~lL~~~~-------~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
.+++.+++ .+.-...-..+-.|..|+|.-|..+.+
T Consensus 202 f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 202 FEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99998751 134445556778888999988887765
No 127
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=1.3 Score=44.72 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=62.7
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 201 PPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 201 ~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
.-|+.+|.+.+ |.++..|+.-|..++..+.....--+.-.++.+.++++...+ -+.|+.+|.|++.. +..+..+.+
T Consensus 6 ~elv~ll~~~s-P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLS-PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCC-hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 35788999998 999999998888887652211111134468888999987766 67799999999984 456666655
Q ss_pred cCChhhHHHhhhcC
Q 040681 281 ENVIRPLVTLLSFE 294 (594)
Q Consensus 281 ~g~i~~Lv~lL~~~ 294 (594)
. .+..+++.+-++
T Consensus 82 ~-~~k~l~~~~~~p 94 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDP 94 (353)
T ss_pred H-HHHHHHHHhcCc
Confidence 4 566666665444
No 128
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=1 Score=50.81 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=50.7
Q ss_pred CChHHHHHhh----ccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 198 GGVPPLLKLL----KETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 198 g~I~~Lv~LL----~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
.+..++..+| ++.. ..+..+|+.++.++..-.. +.+ ..++..|--++.++...+|-.|.++|..+++.+|
T Consensus 241 ~~~s~~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~--r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKS-EMVIYEAARAIVSLPNTNS--REL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred cchhhHHHHHHHHHhchh-HHHHHHHHHHHhhccccCH--hhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 4455555554 4444 7899999999999876211 111 1167777778888899999999999999998766
No 129
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.21 E-value=1.9 Score=42.22 Aligned_cols=158 Identities=14% Similarity=0.090 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCccccc
Q 040681 255 KVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYL 334 (594)
Q Consensus 255 ~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~ 334 (594)
.-.-+|...|..+++ +|+.+..|.++..---|--+|...+. +
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~-~------------------------------------ 135 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSK-S------------------------------------ 135 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhcccc-C------------------------------------
Confidence 344567888888888 45899999886654444445544321 0
Q ss_pred chhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHH
Q 040681 335 YSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIME 413 (594)
Q Consensus 335 ~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~n 413 (594)
|.+ ..++-.+.++++.|.. ++.++-..+...++||..++.++.|++..|.-|...+..
T Consensus 136 ---------------r~f------EyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqK 194 (293)
T KOG3036|consen 136 ---------------RPF------EYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQK 194 (293)
T ss_pred ---------------Cch------HHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 111 2456667788887764 456778888899999999999999999999888888776
Q ss_pred HHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 414 ITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 414 L~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
|---..+-.-++. .+- .--++..++..++..+.+..+..+...++++.-+|+.+..++
T Consensus 195 IlldD~GL~YiCq-t~e-RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 195 ILLDDVGLYYICQ-TAE-RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HhhccccHHHHHH-hHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 5311000000111 000 001123355555555555666778888888888888655433
No 130
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.07 E-value=0.23 Score=45.35 Aligned_cols=93 Identities=18% Similarity=0.332 Sum_probs=74.4
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 040681 19 LLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLR 98 (594)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~l~~~c~~~g~~~ 98 (594)
.|.+.|..+++.+..|+.-...+.+-++.+.+...+.-... +..++|-+..+..+.++|+++..|+.+|.+.+..
T Consensus 17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~----~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~- 91 (147)
T PF05659_consen 17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN----VELDRPRQEEIERLKELLEKGKELVEKCSKVRRW- 91 (147)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh----hhcCCchhHHHHHHHHHHHHHHHHHHHhccccHH-
Confidence 37788999999999999999999999999999999987775 6788888999999999999999999999864421
Q ss_pred eeeeecchhhHHHHHHHHHhh
Q 040681 99 RVVTIVSAADFRKLLNLLDAS 119 (594)
Q Consensus 99 r~~~~~~~~~~~~~~~~l~~~ 119 (594)
.+.-..-|.+-+..++.+
T Consensus 92 ---n~~kk~~y~~Ki~~le~~ 109 (147)
T PF05659_consen 92 ---NLYKKPRYARKIEELEES 109 (147)
T ss_pred ---HHHhhHhHHHHHHHHHHH
Confidence 000134555566666643
No 131
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=3.6 Score=46.01 Aligned_cols=140 Identities=10% Similarity=0.193 Sum_probs=82.8
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
.++..|.++|.+.+..+++-|...++.|+..... .. ++ +.-.+.++..|+...+..++..|+-.|..+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s----~d-av-------K~h~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFS----ID-AV-------KKHQDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccch----HH-HH-------HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3677788888888888888777777766633211 12 11 223567777777666688888888888888
Q ss_pred hcCChhhhhccHHHHHHhccCCCHHHHHHHHHHH----HHhcCCCCccchhhHH-------HHHHcCChHHHHHhccCCc
Q 040681 467 ARTFPARETRVIGPLVAHLSHRNQEVATEAAIAL----QKFASPENFLCTEHSK-------AIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL----~nl~~~~~~l~~~~~~-------~i~~~g~i~~Lv~lL~~~~ 535 (594)
|.... ...++..|++.|..-+..++++-+.=+ -+++.+=++ =++-.- ..++.+..-.+++....++
T Consensus 397 cD~~N--ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W-yVdviLqLiriagd~vsdeVW~RvvQiVvNne 473 (938)
T KOG1077|consen 397 CDVSN--AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSW-YVDVILQLIRIAGDYVSDEVWYRVVQIVVNNE 473 (938)
T ss_pred hchhh--HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHhcccccHHHHHHhheeEecch
Confidence 85443 335677777777777776666543322 233332221 011110 1223445566777766666
Q ss_pred hHhHhH
Q 040681 536 RTQLHG 541 (594)
Q Consensus 536 ~vq~~A 541 (594)
.+|.-|
T Consensus 474 dlq~ya 479 (938)
T KOG1077|consen 474 DLQGYA 479 (938)
T ss_pred hhhHHH
Confidence 555433
No 132
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=1.9 Score=47.85 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 453 PTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+|+++|+..++.|+.+.+.-....+..|+.++.+...+|+..|..+|..++.
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999988777777889999999999999999999999999865
No 133
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.00 E-value=1.5 Score=40.40 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=83.3
Q ss_pred HHHHHhcCChHHHHHhhccCCC-----HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHH
Q 040681 191 KKIIVEEGGVPPLLKLLKETAS-----SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS--IMKVQIQVASL 263 (594)
Q Consensus 191 ~~~i~~~g~I~~Lv~LL~~~~~-----~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~a 263 (594)
...++..||+..|++++.++.. .++...+..++..|-.+.-.-+...+...|..++..+... +..+.+.+..+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567889999999999998762 4677778888888877766566777777788888888765 68899999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 264 VARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 264 L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
|-++..+++.....+.+.=-++.|+.+|+..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~ 114 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS 114 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC
Confidence 9999998877667776655688888888764
No 134
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.89 E-value=0.48 Score=44.73 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH-
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI- 478 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i- 478 (594)
++.++.|+..++..|+ ...+.+ ....++.+...|++.+ +.||..|+.+|..|....-.+-.|-+
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~~-----------ve~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPNL-----------VEPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcHH-----------HHhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceeehhhhh
Confidence 4678899999998776 333322 2337788889998776 99999999999999965544434544
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 479 GPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 479 ~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++.+|.+.+++|+..|...+..+..
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999876
No 135
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.88 E-value=0.22 Score=43.43 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 040681 152 DPMLSWVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227 (594)
Q Consensus 152 ~~i~~~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La 227 (594)
+.-...+..|+..| .+.|+....-|+.-|+.+++..|.-+..+-+.|+=..+++|+.+++ ++++.+|+.++..+-
T Consensus 39 ~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d-~eVr~eAL~avQklm 114 (119)
T PF11698_consen 39 ENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED-PEVRYEALLAVQKLM 114 (119)
T ss_dssp SGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS-HHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 33445677788888 4557778888889999999998888888878899999999999998 999999999987663
No 136
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.84 E-value=0.11 Score=33.75 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+|.+++++++++++||..|+.+|.++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999986
No 137
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.82 E-value=5.1 Score=41.40 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=67.7
Q ss_pred CcHHHHHHHhhhCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH--HHHHhc---------CCCh
Q 040681 387 KGLLCLAKLVEKEQG--ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL--LRVIND---------LDSP 453 (594)
Q Consensus 387 g~l~~L~~LL~~~~~--~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L--l~lL~s---------~~~~ 453 (594)
...|.|.+.+..+.. .++..++.||.-++.++..+.+--... ...++.+ ..+++. .+++
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--------~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--------MESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--------HHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 367888888876654 455667778877766554443211100 0123311 112222 1224
Q ss_pred hhHHHHHHHHHHhhcCChhh---h--hccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 454 TLQIPAIKSIGSLARTFPAR---E--TRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~---~--~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
.+...|+.+-+-|...-+.. . ...++.|+.+|++.+.+||..|..+|.-+
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 67788888877777544431 1 25789999999999999999999988765
No 138
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.81 E-value=0.26 Score=52.34 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccCChhhHH-HHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHhhhcCChhhHH
Q 040681 361 LKIACAEALWMLARGSVANSR-RISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAE-SNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~-~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~r~~~~~~~~~~~~~ 438 (594)
++..|.+++..+. -++..+. .+.-..+.......|.+..-..|..++|++.||++.-- +-|..+. ...+.
T Consensus 407 v~~aA~Ra~~VyV-LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s-------~~eR~ 478 (728)
T KOG4535|consen 407 VKAAASRALGVYV-LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS-------FQERF 478 (728)
T ss_pred HHHHHHhhceeEE-eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH-------HHHHH
Confidence 3445555555443 2343322 23333444555555555566889999999999984321 1111111 11111
Q ss_pred HHHHHHHHHh-----cCCChhhHHHHHHHHHHhhcCChhhhh--------ccHHHHH-HhccCCCHHHHHHHHHHHHHhc
Q 040681 439 VVDQLLRVIN-----DLDSPTLQIPAIKSIGSLARTFPARET--------RVIGPLV-AHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 439 ~v~~Ll~lL~-----s~~~~~v~~~a~~aL~~La~~~~~~~~--------~~i~~Lv-~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
.-..|.+.+. +.+.+.|+..+.++|+|+..--...+. +.+..+. ..+-.+...|+-+||.+++|+.
T Consensus 479 sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf 558 (728)
T KOG4535|consen 479 SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF 558 (728)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh
Confidence 1122333333 334478999999999999863332221 2222222 2234567889999999999997
Q ss_pred CCCCccchhhHHHHHHcCChHHHHHhccCCch--HhHh
Q 040681 505 SPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR--TQLH 540 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~--vq~~ 540 (594)
..+.. ..+..=...-..+.|+.|+.+... ++..
T Consensus 559 kn~a~---~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 559 KNPAL---PLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred cCccc---cccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 62221 011111112256778888885543 5544
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.79 E-value=0.091 Score=34.14 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.3
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++|.+++++.+.+++||..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998853
No 140
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.63 E-value=4.9 Score=41.96 Aligned_cols=204 Identities=13% Similarity=0.166 Sum_probs=135.2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC-CcCCCccCccchhhHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE-TFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~v~~~~si~~l~ 313 (594)
.+...+.+..|+..|..-+-+.+..++.+..++-...... ...|.++.|... . + .+..++
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~--------~~~p~v~yl~~~~p---e--------il~~L~ 131 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGS--------RSPPTVDYLERHRP---E--------ILDILL 131 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTT--------B--HHHHHHHT--T---H--------HHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCC--------CCCchHHHHHhCCH---H--------HHHHHH
Confidence 4556788999999999999999999999999987653211 111223333222 1 0 011111
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLA 393 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~ 393 (594)
.+ +++|++ --.+-..|+.. ...+..++.+.....+-.+.
T Consensus 132 ~g------------------------------------y~~~di----al~~g~mlRec-~k~e~l~~~iL~~~~f~~ff 170 (335)
T PF08569_consen 132 RG------------------------------------YENPDI----ALNCGDMLREC-IKHESLAKIILYSECFWKFF 170 (335)
T ss_dssp HG------------------------------------GGSTTT----HHHHHHHHHHH-TTSHHHHHHHHTSGGGGGHH
T ss_pred HH------------------------------------hcCccc----cchHHHHHHHH-HhhHHHHHHHhCcHHHHHHH
Confidence 11 111111 12233334444 45788888898888999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 394 KLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 394 ~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
+.++.++=++...|..++..+- ..+..+.. .|..++ ...++....++|.+.+ .-.+..+++.||.|-.+....
T Consensus 171 ~~~~~~~Fdiasdaf~t~~~ll---t~hk~~~a-~fl~~n--~d~ff~~~~~Ll~s~N-YvtkrqslkLL~ellldr~n~ 243 (335)
T PF08569_consen 171 KYVQLPNFDIASDAFSTFKELL---TRHKKLVA-EFLSNN--YDRFFQKYNKLLESSN-YVTKRQSLKLLGELLLDRSNF 243 (335)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHH---HSSHHHHH-HHHHHT--HHHHHHHHHHHCT-SS-HHHHHHHHHHHHHHHHSGGGH
T ss_pred HHhcCCccHhHHHHHHHHHHHH---hccHHHHH-HHHHHH--HHHHHHHHHHHccCCC-eEeehhhHHHHHHHHHchhHH
Confidence 9999999899888888888764 45666655 355444 4668888889998766 888999999999998654433
Q ss_pred hh--------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 474 ET--------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 474 ~~--------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+. .-+..+..+|.+.+..+|.+|-...-=|++
T Consensus 244 ~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 244 NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 21 346788889999999999999998887776
No 141
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.54 E-value=0.73 Score=43.60 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=78.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccC--------CCHHHHHHHHHHHHHhhCCh
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKET--------ASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~--------~~~~v~e~A~~aL~~La~~~ 230 (594)
.++..+..+.... +.+..|.-..+.++ ...+.+++.||+..|+.+|..- .....+.+++.+|..|..+.
T Consensus 70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 3566776654332 44555544444433 4567888999999999988541 22578889999999999988
Q ss_pred hHHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 231 ERVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 231 ~~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
.....++ ..+++..|+..|.+++..++..+..+|..+|
T Consensus 148 ~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 148 YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8888888 5789999999999999999999999999887
No 142
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=8.9 Score=42.01 Aligned_cols=265 Identities=13% Similarity=0.119 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhh----CChhH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIA----NDQER 232 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La----~~~~~ 232 (594)
|+-+-.++..-++..|..-+..|..+-.- |.. +.+. -....+.|..+|.+++ ++++..+-.+|+++- .++++
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcCccc
Confidence 33344466777889999888888877544 222 2221 1234667888898888 999987777777653 33332
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
- --...++.++..+.++++.++..|..-|.....-.+ ..-..--.|++..++..+.+.. . +++.
T Consensus 246 ~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc~s~~e---~-------~~i~-- 309 (675)
T KOG0212|consen 246 M---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPCLSDTE---E-------MSIK-- 309 (675)
T ss_pred c---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccCCCCCc---c-------ccHH--
Confidence 1 113468899999999999999988777777655332 1111111223333333322210 0 0000
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC-cHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK-GLLC 391 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g-~l~~ 391 (594)
....+.-.-|..++. .+..... ++.| .+..
T Consensus 310 -----------------------------------------------~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~v 340 (675)
T KOG0212|consen 310 -----------------------------------------------EYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEV 340 (675)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHh-hhhhccc-cchHHHHHH
Confidence 111111222333332 1111111 3333 4688
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|.+.+.++..+.+..++.-+.-|-.-+ .+. .++-+.+ +...|++-|.+.+ +.|...++..+.++|.+..
T Consensus 341 l~~~l~~~~~~tri~~L~Wi~~l~~~~-p~q-----l~~h~~~----if~tLL~tLsd~s-d~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 341 LTKYLSDDREETRIAVLNWIILLYHKA-PGQ-----LLVHNDS----IFLTLLKTLSDRS-DEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHhhC-cch-----hhhhccH----HHHHHHHhhcCch-hHHHHHHHHHHHHHhcCcc
Confidence 888888888889888877776554222 121 2333332 6777888776554 8899999999999997665
Q ss_pred hhhhccHHHHHHhc---cCCCHHHHHHHHHHHHHh
Q 040681 472 ARETRVIGPLVAHL---SHRNQEVATEAAIALQKF 503 (594)
Q Consensus 472 ~~~~~~i~~Lv~lL---~~~~~~v~~~Aa~aL~nl 503 (594)
.. +.++.+..+| .....-+...+...+..+
T Consensus 410 ~~--~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 410 SP--NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred cc--cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 42 3333333333 443333444444444444
No 143
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=1.5 Score=49.25 Aligned_cols=127 Identities=11% Similarity=0.200 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
+.....-+...|..++.- +...+.++..+|.+.++.+...|+++|..++ .++..-+ +...
T Consensus 223 qlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS----~~p~alk-----------~Aa~ 282 (948)
T KOG1058|consen 223 QLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLS----NDPTALK-----------AAAS 282 (948)
T ss_pred HHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEcc----CCHHHHH-----------HHHH
Confidence 334455666666555552 2345899999999999999999999998876 4553222 2556
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.++.++.+.++-.+..-..--|..+.......-.|.+-.++++|++.+.+|++.+......++..+|
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 6666666555445543333333333322111122667778889999999999999988888887565
No 144
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.31 E-value=0.45 Score=37.79 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC
Q 040681 216 QSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFAREN 282 (594)
Q Consensus 216 ~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g 282 (594)
.+.|.||+++++..+..-..+-+.+.++.++++.++. ...+|..+..+|.-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4679999999999888888888889999999999854 88899999999999987 556777776654
No 145
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.29 E-value=0.54 Score=44.38 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC-HHHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG-VPTIVN 247 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~-i~~Lv~ 247 (594)
++.+|..++.+++.++..-+... +..+|.+...|++++ +.++++|+.+|.+|...+-.+. .|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 56789999999999997654332 245788999999998 9999999999999986432211 122 377888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 248 VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 248 lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+|.+++++++..|...+..+.... ....+. ..++.++..|+..
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~--~~~~i~--~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKR--NPNIIY--NNFPELISSLNNC 113 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhc--cchHHH--HHHHHHHHHHhCc
Confidence 899999999999999999998751 222332 2455555555443
No 146
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=0.75 Score=53.99 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=100.9
Q ss_pred cHHHHHHHhh----hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 388 GLLCLAKLVE----KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 388 ~l~~L~~LL~----~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
..|.++.+.+ .+++++|..|.-||..+..+. ..++. .-.+.|..++..++++.++..++-++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fce-----------s~l~llftimeksp~p~IRsN~Vval 985 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCE-----------SHLPLLFTIMEKSPSPRIRSNLVVAL 985 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHH-----------HHHHHHHHHHhcCCCceeeecchhec
Confidence 4566666663 356899999999998877553 22333 25788999999888899999999999
Q ss_pred HHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-Hh
Q 040681 464 GSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQ 538 (594)
Q Consensus 464 ~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq 538 (594)
|.|+-.+++.-...-+.|.+.|.+.++.||+.|...|.++.. ...|--.|-++.+..+|..+++ +.
T Consensus 986 gDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL---------ndmiKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 986 GDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL---------NDMIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred cchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH---------hhhhHhcccHHHHHHHhcCCcHHHH
Confidence 999988887766778899999999999999999999999976 1223346888888888887776 43
No 147
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.87 E-value=23 Score=41.12 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=80.1
Q ss_pred CcchHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--
Q 040681 152 DPMLSWVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-- 228 (594)
Q Consensus 152 ~~i~~~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-- 228 (594)
+++..-+..+...+ +..++.+|.-++..++++++. ..+.....+.+|.+++|+.+.. ..+++.|...+.++..
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhc
Confidence 44544555566655 456777888888889988865 3347777889999999998887 8999999998888875
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 229 ~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+.+. ... .-..+.+++..++++..++...+.....|+.
T Consensus 308 ~~~~--d~~-~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 308 DDDD--DVV-KSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred CCch--hhh-hhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 2221 111 2357888888888888888877777666653
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.85 E-value=0.27 Score=42.86 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=57.7
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
.+..|+++|..++++.+..-|+-=|+.+++ .|..|..+-+.|+=..+..++.+++++|+..|..+++.|-.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 367788999544337777788888999988 677788887899999999999999999999999999988653
No 149
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.82 E-value=6.1 Score=40.30 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=144.1
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-ChHHHHHhhccC--CCHHHHHHHHHHHHHhhCChhH
Q 040681 157 WVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEG-GVPPLLKLLKET--ASSEAQSAAATALYNIANDQER 232 (594)
Q Consensus 157 ~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g-~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~~~~ 232 (594)
++.+++..| +.=++-.+.-|+.+|.++... ++.|..+..+. .-..++.+++.. . .++|-...-.++.|+.+++.
T Consensus 149 LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~~~~ 226 (432)
T COG5231 149 LFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFSKEC 226 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcCHHH
Confidence 444555533 455666899999999999987 78888776554 345688888774 4 68899999999999988877
Q ss_pred HHHHHh-cCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHH--hHHHHHHcCChhhHHHhhhcCCcCCCccCccc-hh
Q 040681 233 VRVIVS-ELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDAL--AQDDFARENVIRPLVTLLSFETFVDDPRANSG-KQ 307 (594)
Q Consensus 233 ~~~iv~-~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~-~~ 307 (594)
.+.|-+ ..-+.-|+++.+.. ..+|-.-++.++.|++...|. ....+. .|-+.+-|++|....-.++. +.. -.
T Consensus 227 aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEe--l~~di~ 303 (432)
T COG5231 227 AQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEE--LVIDIE 303 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHH--HHHHHH
Confidence 633332 33577788888876 778888999999999874432 233332 34455566666544111111 000 00
Q ss_pred hHHHHHHH-hhhhc-cccc-c--cCCCcccccchhccccCC--Cccc----cc-----------cccCChHHHHHHHHHH
Q 040681 308 SIHTIVQI-NKEME-KNSF-V--GSKNYRPYLYSEYCSSRS--GQNR----KD-----------RENEKPEVKIKLKIAC 365 (594)
Q Consensus 308 si~~l~l~-~~~~~-~~~~-~--~~g~~~~L~~~~~~~s~~--~~~~----~~-----------~~~~dp~~k~~l~~~a 365 (594)
.|++.+-. +.... -+.+ . .+|..+.--+ +.+.+ ..+. ++ -....|.+ ....|
T Consensus 304 ~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~---H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt---~i~vA 377 (432)
T COG5231 304 RIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPY---HHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT---WICVA 377 (432)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCc---ccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc---eEeee
Confidence 11111100 00000 0111 1 3344331100 00000 0000 00 00000000 01234
Q ss_pred HHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 040681 366 AEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEI 414 (594)
Q Consensus 366 ~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL 414 (594)
+.=+..+.+..|+....+...|+=..++.|+.+++++++..|..++.-+
T Consensus 378 c~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 378 CSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 5556666666788888899999999999999999999999999998754
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.80 E-value=13 Score=38.85 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHH-----HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKK-----IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~-----~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~ 232 (594)
+..++..|..-+-+.|.+++....++.+.....+. .+. ...-..|..|++..+++++-..+...|+.+..++..
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHH
Confidence 34467777888999999999888888776444432 222 222223333343333367878888899999999888
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCC---hhhHHHhhhcCCcCCCccCccchhhH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENV---IRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
.+.|.....+..+.+....++-++...|..++..+-..++..-..+...+- +.....+|.+++
T Consensus 157 ~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N-------------- 222 (335)
T PF08569_consen 157 AKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN-------------- 222 (335)
T ss_dssp HHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--------------
T ss_pred HHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--------------
Confidence 888888888888999999999999999999999976656544333333221 233344444431
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhH----HHHHh
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANS----RRISE 385 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~----~~i~e 385 (594)
-..++.+...|+.+- .+..+. +.+.+
T Consensus 223 -------------------------------------------------YvtkrqslkLL~ell-ldr~n~~vm~~yi~~ 252 (335)
T PF08569_consen 223 -------------------------------------------------YVTKRQSLKLLGELL-LDRSNFNVMTRYISS 252 (335)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHH-HSGGGHHHHHHHTT-
T ss_pred -------------------------------------------------eEeehhhHHHHHHHH-HchhHHHHHHHHHCC
Confidence 123566677777763 244443 33445
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
..-+..++.||++....+|..|-...--..+.+...+.++.
T Consensus 253 ~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 253 PENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 56788899999999999999998888766655555555555
No 151
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.71 E-value=3.3 Score=42.57 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=79.4
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-Ch-hHH
Q 040681 157 WVWSYI-AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQ-ERV 233 (594)
Q Consensus 157 ~i~~lv-~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~-~~~ 233 (594)
.+..+| ..+++.++.+|..|+.+|+-.+--+.+... ..++.+.+.++.++ ..++..|+.++..+.. ++ +..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhc
Confidence 344454 577889999999999999988876543322 33677888887666 9999999999998864 22 211
Q ss_pred HH-------HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 234 RV-------IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 234 ~~-------iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.. .-....+..+.+.|.+.+++++..++..+++|--++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 11 122345777888888889999999999999987644
No 152
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.60 E-value=25 Score=41.02 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=55.9
Q ss_pred HHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhc----CCC----HHHHHHHH
Q 040681 194 IVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLS----DSI----MKVQIQVA 261 (594)
Q Consensus 194 i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~----~~~----~~v~~~aa 261 (594)
+.+.||+..|+.+|.+.. ..+........|..++.-+.+|+.+++.|+++.|+..|. .+. +++-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 345699999999987632 135555677788888889999999999999999999885 323 56666666
Q ss_pred HHHHHHhh
Q 040681 262 SLVARMAE 269 (594)
Q Consensus 262 ~aL~~La~ 269 (594)
.++..|..
T Consensus 193 ~IiE~ll~ 200 (802)
T PF13764_consen 193 EIIESLLS 200 (802)
T ss_pred HHHHHHHH
Confidence 66666543
No 153
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.52 E-value=17 Score=43.37 Aligned_cols=269 Identities=19% Similarity=0.203 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC----ChhHHHHHHhcCCHH
Q 040681 169 QLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN----DQERVRVIVSELGVP 243 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~----~~~~~~~iv~~g~i~ 243 (594)
..+.|.+|+.-|..++..- ++.+- .-.+|.++.|+.++. ..||..|+.+|..+-. -+..-..|.-+=.+|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 4568899999999888642 22211 246899999999998 9999999998887642 122233444455688
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhccc
Q 040681 244 TIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKN 322 (594)
Q Consensus 244 ~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~ 322 (594)
.|-.++.+. ..-+|-.-|..|..||..- .+ |.+.+--.....++++...+...
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA--~r--Fle~~q~~~~~g~~n~~nset~~---------------------- 564 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTA--YR--FLELTQELRQAGMLNDPNSETAP---------------------- 564 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHH--HH--HHHHHHHHHhcccccCccccccc----------------------
Confidence 888888884 5667877888888887521 11 10100000111122222100000
Q ss_pred ccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-hhHHHHHhhCcHHHHHHHhhhC-C
Q 040681 323 SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV-ANSRRISETKGLLCLAKLVEKE-Q 400 (594)
Q Consensus 323 ~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~-~~~~~i~e~g~l~~L~~LL~~~-~ 400 (594)
. ..-+.+ ...+..........|..+++ -+++.+.+. |-.|....... .
T Consensus 565 --------~-------------------~~~~~~-~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~--i~~LC~FFGk~ks 614 (1431)
T KOG1240|consen 565 --------E-------------------QNYNTE-LQALHHTVEQMVSSLLSDSPPIVKRALLES--IIPLCVFFGKEKS 614 (1431)
T ss_pred --------c-------------------cccchH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHH--HHHHHHHhhhccc
Confidence 0 000000 01122222233333333333 334444444 33333333221 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh----------hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 401 GELQFNCLMTIMEITAAAESNADLRRAAFKTNSP----------AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~----------~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++...=+. +.+...+..+|- +|..+-. ..+.+++.|..-|.+.. +.|.+.|+++|..|+..+
T Consensus 615 ND~iLshLi-----TfLNDkDw~LR~-aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 615 NDVILSHLI-----TFLNDKDWRLRG-AFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLG 687 (1431)
T ss_pred ccchHHHHH-----HHhcCccHHHHH-HHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhc
Confidence 111111011 112223444444 2433222 24557777777776655 788899999999999654
Q ss_pred hhhhh---ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 471 PARET---RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 471 ~~~~~---~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
--.+. .++....-+|-+.+.-+|..++..|...+.
T Consensus 688 ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 688 LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 33332 445566667778888999999998887654
No 154
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.52 E-value=0.93 Score=45.17 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHh
Q 040681 213 SEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL 290 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~l 290 (594)
......|+.+|--++. ++.+|..+.+..++..|+.+|.. .++.++..+..+|..+...+|.+.+.|.+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3445567778877776 89999999999999999999954 489999999999999988899999999999999999999
Q ss_pred hhcCC
Q 040681 291 LSFET 295 (594)
Q Consensus 291 L~~~~ 295 (594)
+++..
T Consensus 185 lk~~~ 189 (257)
T PF08045_consen 185 LKSKS 189 (257)
T ss_pred Hcccc
Confidence 98774
No 155
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=6.5 Score=46.15 Aligned_cols=243 Identities=14% Similarity=0.093 Sum_probs=129.2
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~ 275 (594)
+.|..|+.-|++.+ ..++.-|+.-++.++. .+ ..+++ -+|...+.++.-. +...-..++-+|+.|+...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56667777777777 7888888888888876 44 22221 2455556655443 45566678888888875431111
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
..+. .++|.+++-|..+.... ....
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G----------------------------------------------~~s~------- 440 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRG----------------------------------------------QHSV------- 440 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhc----------------------------------------------cccc-------
Confidence 1111 13344443333221000 0000
Q ss_pred HHHHHHHHHHHHHHHHhccCChhh-HHHHHhhCcHHH-HHHHhhhCCHHHHHHHHHHHHHHH-HHh--------------
Q 040681 356 EVKIKLKIACAEALWMLARGSVAN-SRRISETKGLLC-LAKLVEKEQGELQFNCLMTIMEIT-AAA-------------- 418 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~-~~~i~e~g~l~~-L~~LL~~~~~~v~~~A~~aL~nL~-~~~-------------- 418 (594)
...++..|+.++|.++++.... -+-+. ....+. |...+-+.+-..+..|..|+.+.. +-.
T Consensus 441 --G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy 517 (1133)
T KOG1943|consen 441 --GQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDY 517 (1133)
T ss_pred --ccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcch
Confidence 0135777888888887654331 01111 111111 122223444567777777776542 000
Q ss_pred -------cCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh-ccHHHHHHhccCCCH
Q 040681 419 -------ESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET-RVIGPLVAHLSHRNQ 490 (594)
Q Consensus 419 -------~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~-~~i~~Lv~lL~~~~~ 490 (594)
....++... +...++....+++.|+.-=-.|-+..+++.++.+|.+|+...+..-. +..++|+.-..+.+.
T Consensus 518 ~sV~~rsNcy~~l~~~-ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 518 FSVTNRSNCYLDLCVS-IAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDA 596 (1133)
T ss_pred hhhhhhhhHHHHHhHH-HHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCCh
Confidence 001122221 22333334456666553211244588999999999999976664433 778999988877777
Q ss_pred HHHHHHHHHHHHhc
Q 040681 491 EVATEAAIALQKFA 504 (594)
Q Consensus 491 ~v~~~Aa~aL~nl~ 504 (594)
..+.-...+.+.++
T Consensus 597 ~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 597 SMRHGVFLAAGEVI 610 (1133)
T ss_pred HHhhhhHHHHHHHH
Confidence 76655444444443
No 156
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.05 E-value=1.7 Score=49.24 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=113.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHh
Q 040681 161 YIAAIQMGQLSDRIEAAIELA-SLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVS 238 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~-~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~ 238 (594)
++.+.+.+..+.+..+..+|. .+.....+. ...++++..++.......-.-++..++.||+. ++..|..|++
T Consensus 509 Llrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~k 582 (748)
T KOG4151|consen 509 LLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILK 582 (748)
T ss_pred HHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHH
Confidence 333334445566666666665 222221111 24566776666554323344578899999998 5556888998
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 239 ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE-NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+-+++.+-.++-..++-.|..++..+.||..+.--....+.+. ..++.....+... .
T Consensus 583 e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~----~------------------ 640 (748)
T KOG4151|consen 583 EKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA----D------------------ 640 (748)
T ss_pred HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh----h------------------
Confidence 8888877667777789999999999999988543344444442 2344333333221 0
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHH-HHHhhCcHHHHHHHh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSR-RISETKGLLCLAKLV 396 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~-~i~e~g~l~~L~~LL 396 (594)
......+++++..++.-....|. ..........++.++
T Consensus 641 -----------------------------------------E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i 679 (748)
T KOG4151|consen 641 -----------------------------------------EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAI 679 (748)
T ss_pred -----------------------------------------hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhh
Confidence 01233445555545433333344 223345678888889
Q ss_pred hhCCHHHHHHHHHHHHHHH
Q 040681 397 EKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~ 415 (594)
.+++.++|...+..+.|+.
T Consensus 680 ~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 680 QDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred cCchhhhhhhhhhhhhhHH
Confidence 9999999998888887754
No 157
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.95 E-value=1.5 Score=49.51 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=124.4
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchh
Q 040681 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVA-RMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQ 307 (594)
Q Consensus 229 ~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~-~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~ 307 (594)
...-+...|+.|+...|.++.....+..+-....+|. .+.-.. .. ....++++...+....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~---~~---~~~v~~~~~s~~~~d~------------ 554 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG---ER---SYEVVKPLDSALHNDE------------ 554 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC---Cc---hhhhhhhhcchhhhhH------------
Confidence 4556788889999999999998888887777777776 222111 11 1224555544443320
Q ss_pred hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 308 si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
+..-...+..++.||+..+...++.++...
T Consensus 555 --------------------------------------------------~~~en~E~L~altnLas~s~s~r~~i~ke~ 584 (748)
T KOG4151|consen 555 --------------------------------------------------KGLENFEALEALTNLASISESDRQKILKEK 584 (748)
T ss_pred --------------------------------------------------HHHHHHHHHHHhhcccCcchhhHHHHHHHh
Confidence 011134567889999887778888899888
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc-CChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT-NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~-~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
+++.+-.++..+++..|..++..+.||. .+.--+-+. +.. +. .++.....+...+ .....++++++..+
T Consensus 585 ~~~~ie~~~~ee~~~lqraa~e~~~NLl---~~~~~~e~s-i~e~~~-----~l~~w~~~~e~~~-E~~~lA~a~a~a~I 654 (748)
T KOG4151|consen 585 ALGKIEELMTEENPALQRAALESIINLL---WSPLLYERS-IVEYKD-----RLKLWNLNLEVAD-EKFELAGAGALAAI 654 (748)
T ss_pred cchhhHHHhhcccHHHHHHHHHHHHHHH---hhHHHHHHH-hhcccc-----CchHHHHHHHhhh-hHHhhhccccccch
Confidence 8888777787788899999999999997 333323332 222 22 2333333333322 34444555555534
Q ss_pred hcCChhhh------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPARE------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~~------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
........ ......++.++.+.+.++|.-....+.|+..
T Consensus 655 ~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 655 TSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 43222211 1445677888889999999988888888543
No 158
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=22 Score=43.48 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=52.9
Q ss_pred CcccccCCccc--CCcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHH
Q 040681 140 GIVLTLPPIAS--NDPMLSWVWSYIAAIQ---MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSE 214 (594)
Q Consensus 140 ~~~~~l~~ia~--~~~i~~~i~~lv~~L~---~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~ 214 (594)
++.+|+..|+. .+.+......+|.+|. .+.......|+..+.+....+......-.-.....-|+.-|.+.. -.
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke-wR 1054 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE-WR 1054 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh-HH
Confidence 56677777765 3445555566666662 332233456888888776653322111111223344555455555 78
Q ss_pred HHHHHHHHHHHhhCChh
Q 040681 215 AQSAAATALYNIANDQE 231 (594)
Q Consensus 215 v~e~A~~aL~~La~~~~ 231 (594)
++|.++-||..|-...+
T Consensus 1055 VReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRP 1071 (1702)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999986433
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.90 E-value=0.63 Score=39.25 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=46.8
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHH--cCChHHHHHhccCCch-HhHhH
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIE--FNAVPPLMRLLRGNDR-TQLHG 541 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~-vq~~A 541 (594)
.++++++..+.+.++.||..||.+|.|++- ..+..++. ......|.+++...++ ||..|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k-------~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISK-------VARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 679999999999999999999999999965 33344432 2466778888888887 88766
No 160
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.77 E-value=1.2 Score=42.60 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=69.1
Q ss_pred CChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhCChhHHHHHHhcC--C--HHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 198 GGVPPLLKLLKE-----TASSEAQSAAATALYNIANDQERVRVIVSEL--G--VPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 198 g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g--~--i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
..+..|+.++.. .+...-....+.++.|++..++.|+.+.+.. . +..|+.+..+.+..-|.-++.+|.|+|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 457788887655 1224556778899999999999999999543 3 566666677778888999999999999
Q ss_pred hcCHHhHHHHHH--cCChhhHHHhhh
Q 040681 269 EHDALAQDDFAR--ENVIRPLVTLLS 292 (594)
Q Consensus 269 ~~~~~~~~~i~~--~g~i~~Lv~lL~ 292 (594)
-..+...+.+.. .+.++.|+--|.
T Consensus 132 Fd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 132 FDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred ccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 866555555543 355666666554
No 161
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.38 E-value=17 Score=36.34 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhhC-ChhHHHHHH-hcCCHHHHHHh-------hcCC--CH---HHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 213 SEAQSAAATALYNIAN-DQERVRVIV-SELGVPTIVNV-------LSDS--IM---KVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~~~~iv-~~g~i~~Lv~l-------L~~~--~~---~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
++.++.|..-|+.--. .++-.-.+- ..|.+..|++= |..+ +. .-..+|...|..+|+ +|+.|..|
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 7778877666654433 233333333 45555555442 2222 22 234456667778888 55899999
Q ss_pred HHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHH
Q 040681 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVK 358 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k 358 (594)
.+++..--|.-.|+..+ .. |++
T Consensus 88 l~a~iplyLyPfL~tt~---k~-------------------------------------------------r~~------ 109 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTS---KT-------------------------------------------------RPF------ 109 (262)
T ss_dssp HHTTGGGGGHHHHH-------S-------------------------------------------------HHH------
T ss_pred HHcCchhhehhhhhccc---cc-------------------------------------------------ccc------
Confidence 99887766666775542 10 111
Q ss_pred HHHHHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh---
Q 040681 359 IKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP--- 434 (594)
Q Consensus 359 ~~l~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~--- 434 (594)
..++-...++++.|.. ++.++...+.+...+|..++.|+.|++-.|.-|...+..|- ..+..+. +....+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL---~dd~GL~---yiC~t~eRf 183 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL---LDDVGLN---YICQTAERF 183 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH---HSHHHHH---HHTSSHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH---cchhHHH---HHhcCHHHH
Confidence 2456667777887764 34677888889999999999999999988988888887765 2221111 111111
Q ss_pred -hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 435 -AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 435 -~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
+...++..++..+....++.+....+++.-.|+.+..+++
T Consensus 184 ~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~ 224 (262)
T PF04078_consen 184 FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRARE 224 (262)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHH
Confidence 1334566666666667778888899999999987665544
No 162
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.01 E-value=3.8 Score=47.23 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=78.7
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC--hhhHHHHHHHHH
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS--PTLQIPAIKSIG 464 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~--~~v~~~a~~aL~ 464 (594)
..+|.|++-|.-++..+|..+..++.-+.... ..+... . ...+|+.++.+=.++++ ..|++.|+.+|.
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~---~tL~t~-~------~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~ 978 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTES---ETLQTE-H------LSTLVPYLLSLSSDNDNNMMVVREDALQCLN 978 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhc---cccchH-H------HhHHHHHHHhcCCCCCcchhHHHHHHHHHHH
Confidence 35788888888899999998888887665222 222221 1 23488888877666653 679999999999
Q ss_pred HhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 465 SLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 465 ~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
.|.+..+.+ +..++..|...|+++..-||++|+.+=.+.
T Consensus 979 aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 979 ALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 999844322 237889999999999999999999875544
No 163
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.79 E-value=15 Score=43.93 Aligned_cols=272 Identities=15% Similarity=0.103 Sum_probs=146.5
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc----CHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAN--DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH----DAL 273 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~----~~~ 273 (594)
|+.+...++.-...+.+.+|...|..|+. +++.+-. -++|.++.++.++..+||..|..+|..+-.. .+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444455544447789999999999987 4444322 3589999999999999999999999887542 122
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
....|.+ -.+|.|-.++.+.+. ...+ ++-..+|..+ .... ..|+
T Consensus 500 daniF~e-YlfP~L~~l~~d~~~-~~vR-iayAsnla~L-----A~tA------------~rFl---------------- 543 (1431)
T KOG1240|consen 500 DANIFPE-YLFPHLNHLLNDSSA-QIVR-IAYASNLAQL-----AKTA------------YRFL---------------- 543 (1431)
T ss_pred cchhhHh-hhhhhhHhhhccCcc-ceeh-hhHHhhHHHH-----HHHH------------HHHH----------------
Confidence 2333332 245555555544211 1100 0000011111 0000 0000
Q ss_pred ChHHHHHHHHHHHHHHHHhc-------------cCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcC
Q 040681 354 KPEVKIKLKIACAEALWMLA-------------RGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAES 420 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~-------------~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~ 420 (594)
+....+.+-. ..+.+..+.. .++=.....||.++++-|+..-+..|..||....
T Consensus 544 ----------e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG- 610 (1431)
T KOG1240|consen 544 ----------ELTQELRQAGMLNDPNSETAPEQNYNTELQALH--HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG- 610 (1431)
T ss_pred ----------HHHHHHHhcccccCcccccccccccchHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh-
Confidence 0011111100 1112211111 1122344556666666788766666766663321
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh--hhhhccHHHHHHhccCCCHHHHHHHHH
Q 040681 421 NADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP--ARETRVIGPLVAHLSHRNQEVATEAAI 498 (594)
Q Consensus 421 ~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~--~~~~~~i~~Lv~lL~~~~~~v~~~Aa~ 498 (594)
.. +.+ .-++..|..+|+..| +.++..-...|.-+|.-.. ..+.+++|.|.+-|.++++.|...|..
T Consensus 611 k~-------ksN----D~iLshLiTfLNDkD-w~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~ 678 (1431)
T KOG1240|consen 611 KE-------KSN----DVILSHLITFLNDKD-WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALG 678 (1431)
T ss_pred hc-------ccc----cchHHHHHHHhcCcc-HHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHH
Confidence 10 111 226788899998775 7777666666555543222 124578899999999999999999999
Q ss_pred HHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 499 ALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 499 aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+|.-|+-.+. +..-....|++ -...+|-.++. ++..++
T Consensus 679 ~ls~Lik~~l-l~K~~v~~i~~-----~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 679 SLSILIKLGL-LRKPAVKDILQ-----DVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred HHHHHHHhcc-cchHHHHHHHH-----hhhhheeCchHHHHHHHH
Confidence 9988865333 12222233332 23334555555 777766
No 164
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=11 Score=43.24 Aligned_cols=182 Identities=14% Similarity=0.120 Sum_probs=112.9
Q ss_pred hccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhh
Q 040681 207 LKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRP 286 (594)
Q Consensus 207 L~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~ 286 (594)
+.++. +.++-.+...|..+....+....+...+++......|++.+.-|--+|...+..||...| ...+|.
T Consensus 736 l~d~q-vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d 806 (982)
T KOG4653|consen 736 LHDDQ-VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD 806 (982)
T ss_pred hcCCc-ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence 33444 667788888888888755566666678888889999998888888888888888877654 335666
Q ss_pred HHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHH
Q 040681 287 LVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACA 366 (594)
Q Consensus 287 Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~ 366 (594)
|.+--.+.+.+. + .| ..++ .-
T Consensus 807 L~e~Y~s~k~k~---------------------------------------------------~--~d----~~lk--VG 827 (982)
T KOG4653|consen 807 LSEEYLSEKKKL---------------------------------------------------Q--TD----YRLK--VG 827 (982)
T ss_pred HHHHHHhcccCC---------------------------------------------------C--cc----ceeh--HH
Confidence 665322221000 0 00 0011 11
Q ss_pred HHHHHhccC-ChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHH
Q 040681 367 EALWMLARG-SVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLR 445 (594)
Q Consensus 367 ~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~ 445 (594)
.|+.++... ++-+.+.. +-.+.++++.++.++...+..++..+.++|..... .... ..-.++..++.
T Consensus 828 Eai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~---------~vsd-~~~ev~~~Il~ 895 (982)
T KOG4653|consen 828 EAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF---------QVSD-FFHEVLQLILS 895 (982)
T ss_pred HHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh---------hhhH-HHHHHHHHHHH
Confidence 333332211 11111111 13567888888877778899999999998854421 1111 12236677777
Q ss_pred HHhcCCChhhHHHHHHHHHHhhc
Q 040681 446 VINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 446 lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
+.+..++..++..|+-.+..+-.
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHh
Confidence 77777778899999999988874
No 165
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=6.2 Score=44.52 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=67.0
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
++=+.+-+++.+.++-++.....++.---+++.+|. +|..|+.+--+..+++|+..|+.+||-+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----------------air~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----------------AIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----------------hHHHhhcccccccchHHHHHHHHHheee
Confidence 344555566677777788877666642212222222 5566666633344499999999999998
Q ss_pred hcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+-..+ ...+..|++| .+-++.||--|+.||+=.++
T Consensus 583 l~~dp----~~~~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 583 LFRDP----EQLPSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred EecCh----hhchHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 85433 3467777777 56789999999999997665
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=18 Score=41.03 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
.+++.|.-||+-++..+++ .++..+.+| ++.++.|+..++++|.--|+++ ++. . ++-
T Consensus 570 DVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~---e-Ai~-------- 627 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLK---E-AIN-------- 627 (929)
T ss_pred HHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcH---H-HHH--------
Confidence 5788899999887766676 456667777 5678999999999998666554 332 2 121
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----hhhccHHHHHHhccCCCHHH
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----RETRVIGPLVAHLSHRNQEV 492 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----~~~~~i~~Lv~lL~~~~~~v 492 (594)
+++.|+. ....-||.-|+.+++.+...... +-.++...+.+...++..+.
T Consensus 628 lLepl~~----D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 628 LLEPLTS----DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhhhhc----ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 4444442 22256788888888877642221 12367788888887766653
No 167
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.92 E-value=9.3 Score=35.22 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHH-hhCcHHHHHHHhh--hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 362 KIACAEALWMLARGSVANSRRIS-ETKGLLCLAKLVE--KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~-e~g~l~~L~~LL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
...+..++..+-.+.++++..+. .+|.++.+..++. ..+..++..++.+|.- +..+...|. .+. +.
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a----Ac~d~~~r~-~I~------~~ 128 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSA----ACIDKSCRT-FIS------KN 128 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH----HTTSHHHHH-CCH------HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH----HHccHHHHH-HHH------HH
Confidence 34567778887778888887775 6788899999998 6778888888888842 235666666 233 44
Q ss_pred HHHHHHHHHhcCCChh-hHHHHHHHHHH
Q 040681 439 VVDQLLRVINDLDSPT-LQIPAIKSIGS 465 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~-v~~~a~~aL~~ 465 (594)
+++.|-++++..+++. ++..|+-.|..
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7788888886555454 66666655543
No 168
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.86 E-value=22 Score=35.16 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC----CCHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHH
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET----ASSEAQSAAATALYNIAN--DQERVRVIVSELGVPTI 245 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~----~~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~L 245 (594)
-...|+.-|..++.+ ++.+..+.++..--.|-.+|..+ ..+-++..+.++++.|.. +++.-..+...+++|..
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345667777777876 88899999887655555566432 236788899999999987 34456677789999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
++.++.|+...+..|+.++..+-.++
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999987654
No 169
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.75 E-value=14 Score=42.01 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC---CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE---QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~---~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
+..+.+||+|+ |.+. .++.|..++... +..++..|+++|..+. ...++ .
T Consensus 507 ~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~---~~~~~--------------~ 558 (618)
T PF01347_consen 507 KIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLA---KHCPE--------------K 558 (618)
T ss_dssp HHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG---GT-HH--------------H
T ss_pred HHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHHHHHHHHHHHh---hcCcH--------------H
Confidence 45678999998 5555 688888888766 4678888999996553 33331 1
Q ss_pred HHHHHHHHHhcCC-ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc-CCCHHHHH
Q 040681 439 VVDQLLRVINDLD-SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS-HRNQEVAT 494 (594)
Q Consensus 439 ~v~~Ll~lL~s~~-~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~-~~~~~v~~ 494 (594)
+.+.|+.++.+.. +.++|..|...|..-- + ....+..++..|. +.+.+|..
T Consensus 559 v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P--~~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 559 VREILLPIFMNTTEDPEVRIAAYLILMRCN---P--SPSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHT--------HHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcC---C--CHHHHHHHHHHHhhCchHHHHH
Confidence 4456666666543 3778877776665531 1 2356677777774 44455543
No 170
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=39 Score=36.69 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH---HHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER---VRVIV 237 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~---~~~iv 237 (594)
+..+....+...|..|+..|++.+.+-|.-++.... -.+..++.-|.++.+.+|+.++..+|..+...-.+ ..-++
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 444566677788999999999999884433322221 23445555444544489999999988877652222 22222
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+ +.-.+..+.++.+++++.++...+..|+.
T Consensus 342 ~--ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 342 N--IALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred h--HHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 1 22345556778899999988888777764
No 171
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.35 E-value=10 Score=41.51 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=93.6
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHhhcCHHhH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIM----KVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~----~v~~~aa~aL~~La~~~~~~~ 275 (594)
...+.+++.+++ ...|..|..-|..++.|......++...++..|.++..++.. ++......++..|-.+.- .-
T Consensus 85 a~~i~e~l~~~~-~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGN-NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 445677888888 777777999999999999999999999999999999998843 333333333333322110 00
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
+......+|.....+.+.. + .+
T Consensus 163 W~~~~~~fV~~~a~~V~~~-------------------------------------------------------~--~~- 184 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAK-------------------------------------------------------R--ED- 184 (713)
T ss_pred eeecccHHHHHHHHHHhhh-------------------------------------------------------h--hc-
Confidence 0000000111111110000 0 00
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
......|...|-++..+++...+.+.++--+..|+..|+..+..++..|...+..+.
T Consensus 185 ---a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 185 ---ANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ---ccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 001234555566666677777888888889999999999999988887544444343
No 172
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=88.16 E-value=42 Score=36.30 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCChHHHHHhhccCC-----CHHH-HHHHHHHHHHhhCChh
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDND---RNKKIIVEEGGVPPLLKLLKETA-----SSEA-QSAAATALYNIANDQE 231 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~---~~~~~i~~~g~I~~Lv~LL~~~~-----~~~v-~e~A~~aL~~La~~~~ 231 (594)
+...+...+.+.|..|+--...+++++| .+|+.+.++=|.+.+-+||.+.+ .+.+ +.-+...|.-++++++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455666677788888887888887644 46788999999999999997642 1233 3446677778888887
Q ss_pred H--HHHHHhcCCHHHHHHhhcCC-CHH------HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 232 R--VRVIVSELGVPTIVNVLSDS-IMK------VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 232 ~--~~~iv~~g~i~~Lv~lL~~~-~~~------v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
- -..+++ .||.|..++..+ +++ +.+.+-.+|...+.+ +.....+...|+++.+.+.-
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHH
Confidence 3 455654 599999999765 555 788888999888886 45677777889999988764
No 173
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.90 E-value=2.7 Score=33.41 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
.+.|++++++++.. +.--..+.+.+.|+.++++....+...++=.+..+|+.++...+..+.+-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 56789999999875 44445555678999999998876557889999999999999988877776654
No 174
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.64 E-value=3.9 Score=48.36 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=96.5
Q ss_pred cCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhh
Q 040681 352 NEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE-KEQGELQFNCLMTIMEITAAAESNADLRRAAFK 430 (594)
Q Consensus 352 ~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~ 430 (594)
+.||+ ++..|.-||+.+..-+.+.|.. .+|.|+..|+ ++++-++.|+.-+++.++ -.-+.+ .
T Consensus 934 ~sdp~----Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDla---v~fpnl-----i 996 (1251)
T KOG0414|consen 934 FSDPE----LQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLA---VRFPNL-----I 996 (1251)
T ss_pred CCCHH----HHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchh---hhcccc-----c
Confidence 45554 5788888999876666666654 5899999998 667889999999997765 222211 1
Q ss_pred cCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 431 TNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 431 ~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
...-+.|.+-|.+.+ +.++..|..+|.+|-.+.-.+-.|.++.+..+|.+++.+++.-|=.-.-.+
T Consensus 997 ------e~~T~~Ly~rL~D~~-~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 997 ------EPWTEHLYRRLRDES-PSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ------chhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 225577888887666 999999999999999877666679999999999999999888777333333
No 175
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.60 E-value=37 Score=38.27 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh-hC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 363 IACAEALWMLARGSVANSRRISETKGLLCLAKLVE-KE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 363 ~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~-~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
....+||+|+ |.+. .++.|..++. .. +..++..|+++|..++ ...+. .+
T Consensus 464 ~~~LkaLGN~--g~~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a---~~~p~--------------~v 515 (574)
T smart00638 464 QLYLKALGNA--GHPS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLA---KRDPR--------------KV 515 (574)
T ss_pred eeHHHhhhcc--CChh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH---HhCch--------------HH
Confidence 3467888888 5565 4666666665 21 3478889999998765 32221 13
Q ss_pred HHHHHHHHhcC-CChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc-CCCHHHH
Q 040681 440 VDQLLRVINDL-DSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS-HRNQEVA 493 (594)
Q Consensus 440 v~~Ll~lL~s~-~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~-~~~~~v~ 493 (594)
-+.|+.+..+. .++++|..|.-.|...- + ....+..++..+. +.+.+|.
T Consensus 516 ~~~l~~i~~n~~e~~EvRiaA~~~lm~t~---P--~~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 516 QEVLLPIYLNRAEPPEVRMAAVLVLMETK---P--SVALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcC---C--CHHHHHHHHHHHhhcCcHHHH
Confidence 34455555543 33778877766655431 1 2345666666663 4445553
No 176
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.58 E-value=5.1 Score=38.31 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh----------hhHHHHHHHHHHHhc-----CCChhhHHHHHHHHHH
Q 040681 401 GELQFNCLMTIMEITAAAESNADLRRAAFKTNSP----------AAKAVVDQLLRVIND-----LDSPTLQIPAIKSIGS 465 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~----------~~~~~v~~Ll~lL~s-----~~~~~v~~~a~~aL~~ 465 (594)
......+++.|+|||+..+. .++ .+....+ .....++.|+.++.. .+..+-....+..+.|
T Consensus 9 ~~~adl~~MLLsNlT~~~~~---~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSG---CEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cchHHHHHHHHHHhccchHH---HHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 33445678999998833222 221 1221111 134567888887776 2225567789999999
Q ss_pred hhcCChhhhh------cc--HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHH---cCChHHHHHhccCC
Q 040681 466 LARTFPARET------RV--IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIE---FNAVPPLMRLLRGN 534 (594)
Q Consensus 466 La~~~~~~~~------~~--i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~---~g~i~~Lv~lL~~~ 534 (594)
+++....++. +. +..|+..+.+.+..-+.-++.+|.|.+. + .+....++. .+.+|.|+--|..+
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF-d----~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF-D----TDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc-c----HhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9986655442 34 6777777788877667778889999987 2 233455554 35667776666654
Q ss_pred ch
Q 040681 535 DR 536 (594)
Q Consensus 535 ~~ 536 (594)
+.
T Consensus 160 Ee 161 (192)
T PF04063_consen 160 EE 161 (192)
T ss_pred Cc
Confidence 43
No 177
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.42 E-value=62 Score=37.66 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhh
Q 040681 172 DRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVL 249 (594)
Q Consensus 172 ~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL 249 (594)
.+..++.....++. .+......+.....+|.+-.+..+.+ ..++...+..+..++. .+ +..-+ .--.|.+...+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l 446 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KERTI-SELLPLLIGNL 446 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCcCc-cccChhhhhhc
Confidence 34444433333332 23333344555555666666666666 7777666665555543 22 11111 22467777778
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCC
Q 040681 250 SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKN 329 (594)
Q Consensus 250 ~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~ 329 (594)
++..++|+.+..+.+..+=...+..........-++.++.+-...
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~----------------------------------- 491 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL----------------------------------- 491 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-----------------------------------
Confidence 888999999988877665433321111111222233333321110
Q ss_pred cccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHH
Q 040681 330 YRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLM 409 (594)
Q Consensus 330 ~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~ 409 (594)
+-.++....+.++.++.. . ...+.+...-+.+..-+.+...+++..|+.
T Consensus 492 ----------------------------~wRvr~ail~~ip~la~q-~--~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 492 ----------------------------LWRVRLAILEYIPQLALQ-L--GVEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHh-h--hhHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 001223334444444321 1 122332222222222233344567777777
Q ss_pred HHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC--hhhhhccHHHHHHhccC
Q 040681 410 TIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF--PARETRVIGPLVAHLSH 487 (594)
Q Consensus 410 aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~--~~~~~~~i~~Lv~lL~~ 487 (594)
.+..++-. |..++. ....++.++...... +.-.+...+-++.-|+... +.....+.|.+..+..+
T Consensus 541 ~l~~l~~~-----------~G~~w~-~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D 607 (759)
T KOG0211|consen 541 NLPALVET-----------FGSEWA-RLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD 607 (759)
T ss_pred HhHHHHHH-----------hCcchh-HHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC
Confidence 77655422 221111 223556665544322 2555666666666555422 22334788999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 488 RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 488 ~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
..+.|+..+|..|-.+... ++. ...+.-..|.+..+....+. ++..|.
T Consensus 608 ~vanVR~nvak~L~~i~~~---L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 608 PVANVRINVAKHLPKILKL---LDE----SVRDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred CchhhhhhHHHHHHHHHhh---cch----HHHHHHHHHHHHHhccCcccchhHHHH
Confidence 9999999999999998651 222 23333344555555555555 776665
No 178
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.29 E-value=4.7 Score=43.92 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC---CHHHHHHHHHHHHHhhCChhHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA---SSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~---~~~v~e~A~~aL~~La~~~~~~ 233 (594)
....+...+.+|+...+..|...|.+++.+ ....+.++...|+..|.+++.+++ +.++.....+++..+-.+.-.-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 455677889999999999999999999987 888899999999999999999875 2455555566665554332222
Q ss_pred HHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 234 RVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+..+...+|...+.+.+-. +..+-..|...|-++...++..++.+.+.--+..|+.+++..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~ 225 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS 225 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc
Confidence 2223333333444444322 666778888899998888777777887777788888888765
No 179
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=77 Score=37.75 Aligned_cols=223 Identities=19% Similarity=0.219 Sum_probs=122.6
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 239 ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
++++..|...|++.+..|+..||.-+..++...| ..+++ .+|...++++.... +++ +||.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e--~~~-------aWHg------- 399 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAE--DDS-------AWHG------- 399 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCC--chh-------HHHH-------
Confidence 3578888888888899999999999999998876 22222 24555566443321 111 2332
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK 398 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~ 398 (594)
++-+|+.|+...--.-..+ ..++|.+++-|.-
T Consensus 400 ----------------------------------------------acLaLAELA~rGlLlps~l--~dVvplI~kaL~Y 431 (1133)
T KOG1943|consen 400 ----------------------------------------------ACLALAELALRGLLLPSLL--EDVVPLILKALHY 431 (1133)
T ss_pred ----------------------------------------------HHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhh
Confidence 3455666553221000011 1246666665542
Q ss_pred C--------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH-----HHHHhcCCChhhHHHHHHHHHH
Q 040681 399 E--------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL-----LRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 399 ~--------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L-----l~lL~s~~~~~v~~~a~~aL~~ 465 (594)
+ ...++..||..++.+++..+.+ ++. +++..| ...+-+. ....+..|..|+--
T Consensus 432 d~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l~------------p~l~~L~s~LL~~AlFDr-evncRRAAsAAlqE 497 (1133)
T KOG1943|consen 432 DVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DLK------------PVLQSLASALLIVALFDR-EVNCRRAASAALQE 497 (1133)
T ss_pred hhhhcccccccchHHHHHHHHHHHHhcCChh-hhh------------HHHHHHHHHHHHHHhcCc-hhhHhHHHHHHHHH
Confidence 2 1357777877777666444322 111 133322 2222222 26677788777766
Q ss_pred hhcCChhh------------------hh-------------ccHHHHHHh-----ccCCCHHHHHHHHHHHHHhcCCCCc
Q 040681 466 LARTFPAR------------------ET-------------RVIGPLVAH-----LSHRNQEVATEAAIALQKFASPENF 509 (594)
Q Consensus 466 La~~~~~~------------------~~-------------~~i~~Lv~l-----L~~~~~~v~~~Aa~aL~nl~~~~~~ 509 (594)
..+...+. +. +...++++- +.+-+..++..|+++|.+++-.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~--- 574 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT--- 574 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh---
Confidence 55432211 00 223444443 3567889999999999997541
Q ss_pred cchhhHHHHHHcCChHHHHHhccCCchHhHhHHHHHHHHHHH
Q 040681 510 LCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLT 551 (594)
Q Consensus 510 l~~~~~~~i~~~g~i~~Lv~lL~~~~~vq~~Al~l~~~~~l~ 551 (594)
.-.-...+..++|++...+++.--.++.-++..++..
T Consensus 575 -----~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 575 -----EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred -----hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 1122334678888888877776333444344444433
No 180
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=61 Score=37.19 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCC
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
++.++...+.+-+ ++-+.-.+.++..||..++-..++.+..|.++| .++..+-++...-++..++. +|
T Consensus 355 Lm~qI~~fv~dis-DeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie-~~ 423 (865)
T KOG1078|consen 355 LMKQISSFVSDIS-DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIE-EN 423 (865)
T ss_pred HHHHHHHHHHhcc-ccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH-hC
Confidence 3334443443322 666667778888888888888889999999988 45667777777778877765 44
No 181
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.93 E-value=5 Score=44.51 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
+.|..|+.-|.......|+.. ..++.+++.|.++++..++..|...|-.+| ..+++. +..+
T Consensus 37 k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~c---k~~~~~-----------v~kv 97 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLC---KDNPEH-----------VSKV 97 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG-----T--T------------HHHH
T ss_pred HHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHH---HhHHHH-----------HhHH
Confidence 457778888888877777744 447999999999999999999999998887 444422 2348
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc---CCCHHHHHHHHHHHH
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS---HRNQEVATEAAIALQ 501 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~Aa~aL~ 501 (594)
++.|+++|.+.+ +.....+-.+|..|-...+ .+.+..|...+. +++..++..+...|.
T Consensus 98 aDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~---k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ADVLVQLLQTDD-PVELDAVKNSLMSLLKQDP---KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-HHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 899999998766 5555566677766664332 233444444332 566677887776663
No 182
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.13 E-value=74 Score=35.31 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
++..|.+.|..|+...|+- ..+ +=+-+-.|+.+.+..+-..|.-+|.. .++.+.- ..++
T Consensus 319 ~rFsA~Riln~lam~~P~k--v~v---cN~evEsLIsd~Nr~IstyAITtLLK-----TGt~e~i-----------drLv 377 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQK--VSV---CNKEVESLISDENRTISTYAITTLLK-----TGTEETI-----------DRLV 377 (898)
T ss_pred HHHHHHHHHHHHHhhCCce--eee---cChhHHHHhhcccccchHHHHHHHHH-----cCchhhH-----------HHHH
Confidence 3667788888877544431 000 11233345556666665655555532 2332111 1244
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++...+..-. ++.+.-++-+++.|+..++..+.-++..|...| +.+..+-++.++-||..+..
T Consensus 378 ~~I~sfvhD~S-D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 378 NLIPSFVHDMS-DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred HHHHHHHHhhc-cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 55555554333 677788889999999999987777888888766 67778888888888888765
No 183
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.91 E-value=3 Score=38.50 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhc--cCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 158 VWSYIA-AIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLK--ETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 158 i~~lv~-~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~--~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
+-+.+. ++..++.+....+...+..+-..-+.....+. .+|..+.++.+.. ..+ ..++..++.+|..=+.+...|
T Consensus 44 ~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~-~~~~~~~lell~aAc~d~~~r 122 (157)
T PF11701_consen 44 ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKD-RKVQKAALELLSAACIDKSCR 122 (157)
T ss_dssp HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHccHHHH
Confidence 334443 33344445777888888887776666666666 5677888888888 445 888888888888777777777
Q ss_pred HHHHhcCCHHHHHHhhcCC-CHH-HHHHHHHHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDS-IMK-VQIQVASLVAR 266 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~-~~~-v~~~aa~aL~~ 266 (594)
..|.+. +++.|-+.++.+ +.. ++..|+-.|.+
T Consensus 123 ~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 123 TFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 777664 689999999655 555 78888777765
No 184
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.88 E-value=4.1 Score=45.20 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI 478 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i 478 (594)
++...+.-|+..|.. ....-|+++.. .++.++.+..+.+ ..||..|++.|..+|...+..-.+++
T Consensus 34 g~~k~K~Laaq~I~k---ffk~FP~l~~~-----------Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPK---FFKHFPDLQEE-----------AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp S-HHHHHHHHHHHHH---HHCC-GGGHHH-----------HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred CCHHHHHHHHHHHHH---HHhhChhhHHH-----------HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 566677766666643 33555555553 6777888877665 88999999999999987655556889
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 479 GPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 479 ~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..|+++|.+.++.....+-.+|..+
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999877765444444444433
No 185
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.12 E-value=11 Score=35.13 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC--hHHHHHhhccCCCHHHHHHHHHHHHHhhC---
Q 040681 154 MLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG--VPPLLKLLKETASSEAQSAAATALYNIAN--- 228 (594)
Q Consensus 154 i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~--I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--- 228 (594)
...++-.+...|++.++..|-.++.-+.-.+..++ +..+.+.|. +..|++.|+.++++.+.+.++.+|..|-.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566667778889898888888887777775532 455655554 77889999998768888888888887753
Q ss_pred -ChhHHHHHHhcC---CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 229 -DQERVRVIVSEL---GVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 229 -~~~~~~~iv~~g---~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
.++-.+.+.... .++.++++++. ....+.+..+|..+-.++|
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 445444444322 23444444443 3455556666666555443
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.36 E-value=62 Score=34.96 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 157 WVWSYIAAIQM-GQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
.|.+++..+.. +..+.+..|...|..+..++ -..|..-. ...+..+++.|....+...++.|.+.|..++.+...|-
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 45556655543 36677888888887776654 22222111 11245567778775448889999999999988654331
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHH-HHHHHHhhcCH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVA-SLVARMAEHDA 272 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa-~aL~~La~~~~ 272 (594)
.=-.+-+|..++..-++...++...|. .++.-+++++|
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 111122344444444455444444444 44556677776
No 187
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=82.31 E-value=1.1e+02 Score=35.92 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=64.7
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCChHHHHHhhcc---CC----CHHHHHHHHHHHHHhhCChhH--H---HHHHhcCC-
Q 040681 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE---TA----SSEAQSAAATALYNIANDQER--V---RVIVSELG- 241 (594)
Q Consensus 175 ~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~---~~----~~~v~e~A~~aL~~La~~~~~--~---~~iv~~g~- 241 (594)
..+.-|...++- ..||+.+++.|+|+.|++.|.. .+ .+++-++...++..|..+... . .......+
T Consensus 141 ~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~ 219 (802)
T PF13764_consen 141 VLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGS 219 (802)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccccccccc
Confidence 344445555554 8999999999999999997741 11 146666666666665542211 1 01011222
Q ss_pred -------HHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 242 -------VPTIVNVLSDS----IMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 242 -------i~~Lv~lL~~~----~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
+..|++.+.++ ++.+....+++|-+|+..+++.-+.+
T Consensus 220 ~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 220 EEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred ccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 66666666654 68889999999999998765444433
No 188
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=3.9 Score=44.68 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=59.7
Q ss_pred HHHHHHHHH-HhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 438 AVVDQLLRV-INDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 438 ~~v~~Ll~l-L~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
++|..|+.+ +... +++|+.+|+.+||-+|-.. ...++..|++| ++.++.|+.-.+.+|+-.++ ++- .
T Consensus 551 ~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiaca-g~G---~-- 619 (926)
T COG5116 551 GVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACA-GTG---D-- 619 (926)
T ss_pred hhHhhhheeecccC-chHHHHHHHHheeeeEecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhc-CCc---c--
Confidence 367777777 4444 4999999999999988533 24566667777 57889999999999987666 321 0
Q ss_pred HHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 516 KAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 516 ~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.-++..|-.|.+.... |++.|+
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~Am 642 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAM 642 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHH
Confidence 1134445555555555 766654
No 189
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=80.13 E-value=85 Score=33.21 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=66.0
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhcc-CCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 158 VWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE-TASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~-~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
|-.++..|. ......|+.++..|..-+.+ +..+..+...|.+..+++.+.. ++++..--.++.++.-++.+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 444555555 44567888999999999876 9999999999999999998844 44234444555666666666655555
Q ss_pred HHhcCCHHHHHHhhc
Q 040681 236 IVSELGVPTIVNVLS 250 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~ 250 (594)
+-+.+....++++|+
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556666777788887
No 190
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.69 E-value=4.1 Score=39.96 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHhcCC-------HHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHH-HHcCCh
Q 040681 214 EAQSAAATALYNIANDQERVRVIVSELG-------VPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDF-ARENVI 284 (594)
Q Consensus 214 ~v~e~A~~aL~~La~~~~~~~~iv~~g~-------i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i-~~~g~i 284 (594)
.-|..|..+|+.|+-.+.|.+.|...+- +..|+++|... ++-.||.|...|.+||..++.....+ .+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4688999999999988888877776553 45566666655 88899999999999999876654444 456889
Q ss_pred hhHHHhhhcC
Q 040681 285 RPLVTLLSFE 294 (594)
Q Consensus 285 ~~Lv~lL~~~ 294 (594)
..|+..+...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 191
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.67 E-value=77 Score=32.43 Aligned_cols=159 Identities=14% Similarity=0.212 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc--CChhhH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT--NSPAAK 437 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~--~~~~~~ 437 (594)
.++..+.++|+-.|.-+.+... ..++.+...++.+++.++..|+.+|..+...- +...+... .. ......
T Consensus 42 ~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~-g~~~~~~~--~~~~~~~~~~ 113 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTH-GIDIFDSE--SDNDESVDSK 113 (298)
T ss_pred HHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-Cchhccch--hccCccchHh
Confidence 4577788888887755544222 24777888888888999999999998876332 22211110 00 011245
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh-hccHHHHHHhc----cCCCHHHHHHHHHHHHHhcCCCCccch
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE-TRVIGPLVAHL----SHRNQEVATEAAIALQKFASPENFLCT 512 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-~~~i~~Lv~lL----~~~~~~v~~~Aa~aL~nl~~~~~~l~~ 512 (594)
.+++.+.+++.+.+ ++++..|+..+..|--.+.... ..++..|+-+- ...+..+++--..-+-.++. . +.
T Consensus 114 ~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~-s---~~ 188 (298)
T PF12719_consen 114 SLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS-S---SP 188 (298)
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc-C---CH
Confidence 68888999999875 8999999999999887666555 55666665544 23445666665556666665 2 34
Q ss_pred hhHHHHHHcCChHHHHHhcc
Q 040681 513 EHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 513 ~~~~~i~~~g~i~~Lv~lL~ 532 (594)
+|+..+. ...++.+-.+..
T Consensus 189 ~~Q~~l~-~~f~~~l~~~~~ 207 (298)
T PF12719_consen 189 ENQERLA-EAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHH-HHHHHHHHHHHh
Confidence 6654444 445666666655
No 192
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.74 E-value=20 Score=33.30 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=68.9
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESN-ADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~-~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
.+..+..+|.+++..-+..++..+.-++ +.+ .++ |..+ +..-+..|+.+|++.++..+.+.|+.+|..|
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~---~~~~~e~----l~~~---~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTV---EQCSWEI----LLSH---GSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHH---HHhhHHH----HHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3556778888888888887777776555 222 221 2211 2457888999999988888999999999988
Q ss_pred hcCC---hh--hhh------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 467 ARTF---PA--RET------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~---~~--~~~------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.... +. ++. ++++.+++++++ ......+..+|..+..
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 7422 21 111 556777777664 4455566666666543
No 193
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.75 E-value=6.3 Score=38.69 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCh-------HHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHHHH-hcCC
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGV-------PPLLKLLKETASSEAQSAAATALYNIANDQE-RVRVIV-SELG 241 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I-------~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~iv-~~g~ 241 (594)
.-|.-|+.+|..++.. +.|...|...+-. ..|+++|....+...+|-|+-.|.+|+..++ ..+.+. +.++
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4567788888888876 6777777665543 3556666666558999999999999998444 343444 7889
Q ss_pred HHHHHHhhcCC
Q 040681 242 VPTIVNVLSDS 252 (594)
Q Consensus 242 i~~Lv~lL~~~ 252 (594)
|..|+.++++.
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=77.47 E-value=38 Score=39.21 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=99.5
Q ss_pred HHHHhccCChhhHHHHHhhCcHHHHHHHhhhC-CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH--HHH
Q 040681 368 ALWMLARGSVANSRRISETKGLLCLAKLVEKE-QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD--QLL 444 (594)
Q Consensus 368 aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~--~Ll 444 (594)
+||++...+++.|+.+.+.|++..+...++.- ..+++..+...+.|++-..+.++...- |. .++ .+-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~--~~--------~~~~~~f~ 563 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI--FE--------FIDFSVFK 563 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH--HH--------HHHHHHHH
Confidence 89999888899999999999999999999854 467889999999999866544331111 11 111 111
Q ss_pred HHHhcCCChhhHHHHHHHHHHhhcCChh-----------------------hhh-----ccHHH-HHHhc-cCCCHHHHH
Q 040681 445 RVINDLDSPTLQIPAIKSIGSLARTFPA-----------------------RET-----RVIGP-LVAHL-SHRNQEVAT 494 (594)
Q Consensus 445 ~lL~s~~~~~v~~~a~~aL~~La~~~~~-----------------------~~~-----~~i~~-Lv~lL-~~~~~~v~~ 494 (594)
..+...++.+.--.++..|..+...++. ... ..+.+ +.+++ .+..++.+.
T Consensus 564 ~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~l 643 (699)
T KOG3665|consen 564 VLLNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQL 643 (699)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHH
Confidence 1222222224445566666655543221 000 12333 55555 567788999
Q ss_pred HHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 495 EAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 495 ~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
.|.|++.+++. .+ ++.++.+.+.|+++.+...-.
T Consensus 644 Wal~ti~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 644 WALWTIKNVLE-QN---KEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHHHH-cC---hhhhhhhHhccchhhhhhcch
Confidence 99999999987 33 478888999999988777544
No 195
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=76.17 E-value=23 Score=34.47 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHH---HHHhhhcCChhhH
Q 040681 362 KIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADL---RRAAFKTNSPAAK 437 (594)
Q Consensus 362 ~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~---r~~~~~~~~~~~~ 437 (594)
+..+.++++.|.. ++.++.+.+....++|.++++++.+++-.|.-|+..+..|- .++..+ ++ .|. .--++.
T Consensus 163 RltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil---~dDvGLqYiCq-T~e-RFyAv~ 237 (315)
T COG5209 163 RLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL---GDDVGLQYICQ-TFE-RFYAVN 237 (315)
T ss_pred eehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh---ccchhHHHHHH-HHH-HHHHHH
Confidence 4445666666643 45677777888899999999999998877777777766553 112111 11 111 001122
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.+++.++.-+-+..+..+...++++--.|+...
T Consensus 238 ~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 238 LVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 233333333333334566667777766666433
No 196
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.82 E-value=18 Score=42.25 Aligned_cols=115 Identities=16% Similarity=0.275 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHH
Q 040681 403 LQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLV 482 (594)
Q Consensus 403 v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv 482 (594)
++..+.-+|+++| -.+..+. +..++.|++-|...+...++-..+-+++.+|....+.-...||.+.
T Consensus 947 vra~~vvTlakmc---Lah~~La-----------Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~ 1012 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMC---LAHDRLA-----------KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIA 1012 (1529)
T ss_pred HHHHHHHHHHHHH---hhhhHHH-----------HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHH
Confidence 4556677788876 3333332 3367888888887777788888888899999766656668899999
Q ss_pred HhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCC---hHHHHHhccCCchHhHhH
Q 040681 483 AHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNA---VPPLMRLLRGNDRTQLHG 541 (594)
Q Consensus 483 ~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~---i~~Lv~lL~~~~~vq~~A 541 (594)
.-|.+.++-|++++...|.++.. . .++.-.| +.-+..++..++.++..|
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq-~---------~~vKw~G~Lf~Rf~l~l~D~~edIr~~a 1064 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQ-F---------GIVKWNGELFIRFMLALLDANEDIRNDA 1064 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHh-h---------hhhhcchhhHHHHHHHHcccCHHHHHHH
Confidence 99999999999999999999976 1 2222333 455666666666566544
No 197
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=74.88 E-value=81 Score=34.27 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=87.2
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHhhCChh----HHHHHHhcCCHHHHHHhhcCC------CHH-HHHHHHHHHHHHhhcC
Q 040681 203 LLKLLKETASSEAQSAAATALYNIANDQE----RVRVIVSELGVPTIVNVLSDS------IMK-VQIQVASLVARMAEHD 271 (594)
Q Consensus 203 Lv~LL~~~~~~~v~e~A~~aL~~La~~~~----~~~~iv~~g~i~~Lv~lL~~~------~~~-v~~~aa~aL~~La~~~ 271 (594)
+..|++..+ .+-+-.|.-....+...++ +|+.+.++-|.+.+-++|.+. .+. .+.-+..+|...|+ .
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~ 93 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V 93 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence 445555555 6777777777778876444 478899999999999999653 233 45666677777776 4
Q ss_pred HHh--HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccc
Q 040681 272 ALA--QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKD 349 (594)
Q Consensus 272 ~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~ 349 (594)
|+. -..+. +.||.|++++..+...++
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~-------------------------------------------------- 121 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDY-------------------------------------------------- 121 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCch--------------------------------------------------
Confidence 553 23333 379999999876632111
Q ss_pred cccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 350 RENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 350 ~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
+...-+...+..+|..++. .+.-.+.++..|+++.+.++-.
T Consensus 122 ------e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 122 ------EDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ------hhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHh
Confidence 1112345566777777764 4555777778888888877654
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=74.76 E-value=10 Score=37.81 Aligned_cols=100 Identities=10% Similarity=0.078 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHH
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIAN--DQERVRVIVSELGVPT 244 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~ 244 (594)
.-...|+.-|..+|.+ ++.|..++++...-.|..+|+..+ .+.++..+.++++.|.. +++....+.+...+|.
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 3445677777888875 999999999988777777776542 15678889999999987 4556777788999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 245 IVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 245 Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.++.++.|+.-.+..|..++.++-.++
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcch
Confidence 999999999999999999999997743
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.70 E-value=13 Score=41.65 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=82.1
Q ss_pred cHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 388 GLLCLAKLVE-KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 388 ~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
-+|.|+..++ +++|.++.||.-.+..++-.. ++ + +...-+.|.+-|.+.+ ..|+..|..++.+|
T Consensus 934 hlpllIt~mek~p~P~IR~NaVvglgD~~vcf-N~-------~------~de~t~yLyrrL~De~-~~V~rtclmti~fL 998 (1128)
T COG5098 934 HLPLLITSMEKHPIPRIRANAVVGLGDFLVCF-NT-------T------ADEHTHYLYRRLGDED-ADVRRTCLMTIHFL 998 (1128)
T ss_pred HHHHHHHHHhhCCCcceeccceeeccccceeh-hh-------h------hHHHHHHHHHHhcchh-hHHHHHHHHHHHHH
Confidence 4788888887 667888999988887665111 11 1 1123456666666555 88999999999999
Q ss_pred hcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 467 ARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
-..+..+-.|-.+.++.+|.+.+.++...|-..+..++..+|
T Consensus 999 ilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 999 ILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred HHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 877766667899999999999999999999999999998666
No 200
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=74.62 E-value=28 Score=37.51 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCch--------hHHHHHhc----CChHHHHHhhccCCCHHHHHHHHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDR--------NKKIIVEE----GGVPPLLKLLKETASSEAQSAAATALYN 225 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~--------~~~~i~~~----g~I~~Lv~LL~~~~~~~v~e~A~~aL~~ 225 (594)
+..++..|.+ ++....|+.++.-+..+.+. +.+.+.+. ..+|.|++..+..+ .+.+..-..||.+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHHHH
Confidence 3345555543 66788889998888777332 23333332 45778888888777 6688888999999
Q ss_pred hhCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 226 IAND-QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 226 La~~-~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
+-.+ |...-.---...+|.|++-|..++.+++..+..+|..+....+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 8874 3221111113478999999999999999999999999987654
No 201
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.51 E-value=2e+02 Score=34.12 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHhhc---cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHH
Q 040681 169 QLSDRIEAAIELASLAK---DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPT 244 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~---~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~ 244 (594)
++-.+.-|+..+++++. .+..++. ..+.=.++.+.-.++++- .-++-.|+|+++.++. +-.....+. .++..
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~--~ale~ 506 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLS--EALEL 506 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHH--HHHHH
Confidence 44455556666666553 3333332 233334555555677776 8899999999999994 222222221 23556
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHH
Q 040681 245 IVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVT 289 (594)
Q Consensus 245 Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~ 289 (594)
..+.|. +.+..|+-.|+-+|..+-++.+.....+.. .||++++
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~--hvp~~mq 550 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA--HVPPIMQ 550 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh--hhhHHHH
Confidence 666776 668899999999999998877655555544 3444433
No 202
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.71 E-value=2.3e+02 Score=34.38 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=72.3
Q ss_pred cHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 388 GLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 388 ~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.|..++..+.-+ .++....+.. |.-++.+..... . ..+.+....+++.+..+|.+.. ..+...|++.+..
T Consensus 782 ~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~---~---~ld~~~l~~li~~V~~~L~s~s-reI~kaAI~fikv 853 (1176)
T KOG1248|consen 782 ILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFK---N---ILDDETLEKLISMVCLYLASNS-REIAKAAIGFIKV 853 (1176)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHh---c---cccHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 577777777655 2333332332 433332221111 1 1233445678888888888766 9999999999999
Q ss_pred hhcCChhhhh-----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 466 LARTFPARET-----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 466 La~~~~~~~~-----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++..++.... ..++.+..++++....++...-..|-.|+.
T Consensus 854 lv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 854 LVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9987765322 467888888888889999888888777765
No 203
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.45 E-value=1e+02 Score=30.32 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQ-ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
+|.|+.-+....+++.+.....+|..++.++ .+...+ +..|..+.+.+..+.+.-+...+..+-..++. .+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HH
Confidence 4555553444434999999999999999876 444444 44566666777777766677777777654431 11
Q ss_pred HHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHH
Q 040681 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVK 358 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k 358 (594)
+.+..++..+.-...... ++.+. .
T Consensus 74 ---~~L~~~L~~~~~r~~~~~--------------------------------------------------~~~~~---~ 97 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSF--------------------------------------------------SSKDE---F 97 (234)
T ss_pred ---HHHHHHHHHHHhhccccc--------------------------------------------------CCCcc---h
Confidence 234434333111100000 00000 0
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHH
Q 040681 359 IKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 359 ~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~ 415 (594)
.+.....+.++..+|...++ + -...++.+..+| +..++.++..+..+|..+|
T Consensus 98 ~~~~i~~a~s~~~ic~~~p~-~----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 98 WECLISIAASIRDICCSRPD-H----GVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHHHHHHHhChh-h----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 12233345566777765665 1 122578888888 6777888888888998887
No 204
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.99 E-value=2.2e+02 Score=33.85 Aligned_cols=74 Identities=7% Similarity=0.089 Sum_probs=47.5
Q ss_pred CChHHHHHhhc------cC-CCHHHHHHHHHHHHHhhC--ChhH-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 040681 198 GGVPPLLKLLK------ET-ASSEAQSAAATALYNIAN--DQER-VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARM 267 (594)
Q Consensus 198 g~I~~Lv~LL~------~~-~~~~v~e~A~~aL~~La~--~~~~-~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~L 267 (594)
|.++.++..|. .+ +++.-.+.|..++++|+. .... -....+.=.++.+.-.++++..-+|.+|||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 55666777776 22 236777888999999884 1111 11222222344445566788888999999999999
Q ss_pred hhcC
Q 040681 268 AEHD 271 (594)
Q Consensus 268 a~~~ 271 (594)
|+-+
T Consensus 490 ~~~d 493 (1010)
T KOG1991|consen 490 SSID 493 (1010)
T ss_pred Hhcc
Confidence 9543
No 205
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=71.70 E-value=31 Score=32.28 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
....+.++|..+..........+...+++..++..|.+.+..++..++..|..+|
T Consensus 132 ~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 132 IEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3556788888886433443444456789999999999999999998888887665
No 206
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.78 E-value=2e+02 Score=32.45 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=73.7
Q ss_pred cHHHHHHHhhhC----CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc---CCChhhHHHHH
Q 040681 388 GLLCLAKLVEKE----QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND---LDSPTLQIPAI 460 (594)
Q Consensus 388 ~l~~L~~LL~~~----~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s---~~~~~v~~~a~ 460 (594)
.+..+..|++++ ...++..|..++.++..-...+..-. .......+++.+...|.. ..+...+..++
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 467 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC------PDFVLEELLKYLHELLQQAVSKGDEEEIQLYL 467 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC------ChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Confidence 466777777653 34566666777766653211111000 000012344555544432 12245567889
Q ss_pred HHHHHhhcCChhhhhccHHHHHHhcc---CCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--c
Q 040681 461 KSIGSLARTFPARETRVIGPLVAHLS---HRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--D 535 (594)
Q Consensus 461 ~aL~~La~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~ 535 (594)
++|||+. ....++.|...+. ..+..+|..|++||.+++. ..+ .-.-+.|.++.... +
T Consensus 468 kaLGN~g------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~-~~p-----------~~v~~~l~~i~~n~~e~ 529 (574)
T smart00638 468 KALGNAG------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAK-RDP-----------RKVQEVLLPIYLNRAEP 529 (574)
T ss_pred HhhhccC------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH-hCc-----------hHHHHHHHHHHcCCCCC
Confidence 9999987 2345666666664 3457899999999999864 111 12345566666643 3
Q ss_pred h-HhHhHH
Q 040681 536 R-TQLHGL 542 (594)
Q Consensus 536 ~-vq~~Al 542 (594)
+ +|..|+
T Consensus 530 ~EvRiaA~ 537 (574)
T smart00638 530 PEVRMAAV 537 (574)
T ss_pred hHHHHHHH
Confidence 3 888877
No 207
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.55 E-value=21 Score=40.38 Aligned_cols=102 Identities=19% Similarity=0.291 Sum_probs=65.9
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
|.+..+++-.++.+..|+.+++..|.-+. ..+.++-.. ....+.+.++.=+.... +.|+..|+.+|..+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~---d~~~eidd~-------vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLS---DENAEIDDD-------VFNKLNEKLLIRLKDRE-PNVRIQAVLALSRL 153 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHh---ccccccCHH-------HHHHHHHHHHHHHhccC-chHHHHHHHHHHHH
Confidence 34445555556677899999999998776 222211111 11224444444444333 89999999999999
Q ss_pred hcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHH
Q 040681 467 ARTFPARETRVIGPLVAHL-SHRNQEVATEAAIA 499 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~a 499 (594)
-......+..+...++.++ .+++++|++.|...
T Consensus 154 Q~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 154 QGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSN 187 (892)
T ss_pred hcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 8655544557788888888 67889999985433
No 208
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=67.64 E-value=2e+02 Score=33.87 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh
Q 040681 170 LSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL 249 (594)
Q Consensus 170 ~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL 249 (594)
+..+..|..++...++.. . -.=...+.+..|+++....+ .++.-.-..+|+..+..+.-...-.+...+|.++.+.
T Consensus 505 ~~~ki~a~~~~~~~~~~~--v-l~~~~p~ild~L~qlas~~s-~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCKVK--V-LLSLQPMILDGLLQLASKSS-DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CchhHHHHHHHHhccCce--e-ccccchHHHHHHHHHccccc-HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 345555555555554220 0 00012345556777766665 7888888889998887333333333555677776655
Q ss_pred c--CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 250 S--DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 250 ~--~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
- +.+|.+...+-.++-.|+.. ..|..-+. .-.||.|+..|..+
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~-e~~iPslisil~~~ 625 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQI-AANYGPMQ-ERLIPSLISVLQLN 625 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHH-HHhhcchH-HHHHHHHHHHHcCc
Confidence 3 34788888888888888763 34444432 34799999998766
No 209
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.37 E-value=41 Score=38.05 Aligned_cols=115 Identities=13% Similarity=0.212 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI 478 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i 478 (594)
.++++|..|--+|..+-++.. . |. ..-.+.|+..+..++.|.++..|+-.||.+.-.+.......-
T Consensus 908 sd~~lq~aA~l~L~klMClS~--~------fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t 973 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSF--E------FC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHT 973 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhH--H------HH------HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHH
Confidence 467888888888776654432 1 21 235788999999888899999999999999987776666667
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 479 GPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 479 ~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
.-|.+-|.+.+..|++.+...+.++.-.+. +--.|-.+.+..+|...|.
T Consensus 974 ~yLyrrL~De~~~V~rtclmti~fLilagq---------~KVKGqlg~ma~~L~deda 1022 (1128)
T COG5098 974 HYLYRRLGDEDADVRRTCLMTIHFLILAGQ---------LKVKGQLGKMALLLTDEDA 1022 (1128)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHccc---------eeeccchhhhHhhccCCcc
Confidence 888999999999999999999999876221 1114666778888887765
No 210
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.94 E-value=3.4e+02 Score=34.07 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred hCcHHHHHHHhhhCCH-HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQG-ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIG 464 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~-~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~ 464 (594)
...+|.+.++++++-+ ..+..|+..+.-|+ . + .-....|.+...+..++--+++ .+..++...+.++|
T Consensus 1234 eelip~l~el~R~sVgl~Tkvg~A~fI~~L~---~------r-~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1234 EELIPRLTELVRGSVGLGTKVGCASFISLLV---Q------R-LGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMG 1302 (1702)
T ss_pred HHHHHHHHHHHhccCCCCcchhHHHHHHHHH---H------H-hccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHH
Confidence 3468999999987653 56777777776665 1 1 1122234334455555555554 34889999999999
Q ss_pred HhhcCChhhhh-ccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 465 SLARTFPARET-RVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 465 ~La~~~~~~~~-~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
.|+......+. ..+..++..+-.+......-+|..+.||
T Consensus 1303 ~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~I 1342 (1702)
T KOG0915|consen 1303 YLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNI 1342 (1702)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHH
Confidence 99986654333 4555555544222222236667777765
No 211
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=66.29 E-value=1.5e+02 Score=29.82 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhc----cCchhHHHHHh------c-CChHHHHHhhccC-CCHHHHHHHHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAK----DNDRNKKIIVE------E-GGVPPLLKLLKET-ASSEAQSAAATALY 224 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~----~~~~~~~~i~~------~-g~I~~Lv~LL~~~-~~~~v~e~A~~aL~ 224 (594)
..|--++.|.+....+-..|+.-|..+.. +++..+..+.+ + |..+.|..++--| .++...+.+...|.
T Consensus 8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~ 87 (262)
T PF14225_consen 8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLS 87 (262)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHH
Confidence 35667778887777777777766655432 22333333321 2 5555555544322 22456677777888
Q ss_pred HhhCChh--------HHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh
Q 040681 225 NIANDQE--------RVRVIVSELGVPTIVNVLSDSI----MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292 (594)
Q Consensus 225 ~La~~~~--------~~~~iv~~g~i~~Lv~lL~~~~----~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~ 292 (594)
.|...++ +|-.+.=.+.+|.++..+.+++ ......+|..|+.+|... ..+.+..++....
T Consensus 88 ~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~La~il~~ya 159 (262)
T PF14225_consen 88 RLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPNLARILSSYA 159 (262)
T ss_pred HHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCccHHHHHHHHH
Confidence 7775322 2333333445777777777766 134556778888887532 1223434444433
Q ss_pred cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHh
Q 040681 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWML 372 (594)
Q Consensus 293 ~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L 372 (594)
.+..++ +......++..|+.-
T Consensus 160 ~~~fr~-----------------------------------------------------------~~dfl~~v~~~l~~~ 180 (262)
T PF14225_consen 160 KGRFRD-----------------------------------------------------------KDDFLSQVVSYLREA 180 (262)
T ss_pred hcCCCC-----------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 332111 112233445555543
Q ss_pred ccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 040681 373 ARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND 449 (594)
Q Consensus 373 ~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s 449 (594)
.- |+ .+...+..|+.+|+++...+|......|..+- ...++++. -...++..+++++..
T Consensus 181 f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll----~~~d~~~~-------~~~dlispllrlL~t 239 (262)
T PF14225_consen 181 FF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLL----PHVDMRSP-------HGADLISPLLRLLQT 239 (262)
T ss_pred hC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh----ccccCCCC-------cchHHHHHHHHHhCC
Confidence 21 22 12335788999999999999999999997765 33344441 124478888888863
No 212
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=65.42 E-value=43 Score=28.24 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL 249 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL 249 (594)
+.|..|+..+..=-..+--.-..+. ..+.+..|++-+..+. ...++.+...|..+..++.....+.+-|++..|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence 4555666555432222111222222 3344556666666666 5688889999999999999999999999998877765
Q ss_pred cCCCHHHHHHHHHHHH
Q 040681 250 SDSIMKVQIQVASLVA 265 (594)
Q Consensus 250 ~~~~~~v~~~aa~aL~ 265 (594)
..-++..+..+-.++-
T Consensus 81 ~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 81 PNVEPNLQAEIDEILD 96 (98)
T ss_pred hcCCHHHHHHHHHHHh
Confidence 5556766665555543
No 213
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=65.32 E-value=58 Score=37.71 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=70.2
Q ss_pred HHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCH--HHHHHhhcCCCH-H
Q 040681 179 ELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGV--PTIVNVLSDSIM-K 255 (594)
Q Consensus 179 ~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i--~~Lv~lL~~~~~-~ 255 (594)
.|.+....++++-+.+++.||+..+.+.++..+..+++..+...++|++...+.+......--+ ..+-.+++..+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6778888889999999999999999999997766899999999999999755433222211111 244445555544 8
Q ss_pred HHHHHHHHHHHHhhcCH
Q 040681 256 VQIQVASLVARMAEHDA 272 (594)
Q Consensus 256 v~~~aa~aL~~La~~~~ 272 (594)
.--.++.+|+.+..+++
T Consensus 574 rsY~~~siLa~ll~~~~ 590 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSE 590 (699)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 88899999999887643
No 214
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=65.29 E-value=30 Score=31.34 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
..+..+..+|+++++.++..|+.-|-.+.+++ ......|...+.+..|++++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 35566778999999999999999888888774 56778888889999999999764448999999998888774
No 215
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.28 E-value=94 Score=29.44 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--hhccHHHHH----HhccCCCHHHHHHHHHHHHHhcC
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--ETRVIGPLV----AHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--~~~~i~~Lv----~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+=..|+..|..+.+..+....++++..|....+-. +.|.++.++ .++.+.+.+++..+..+++-+.+
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 44567778887777888899999999999866543 235555554 45578999999999988888866
No 216
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=64.77 E-value=37 Score=31.34 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.5
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.+.|+++|+...+..++.++.++||.|.--+..+..
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 456778888876699999999999999874444333
No 217
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.80 E-value=3.2e+02 Score=32.33 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH------hcC
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV------SEL 240 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv------~~g 240 (594)
..|...-.++++-|..++-+ ..+...+++.|||..|+..=+. .+.-.....+|+.|+.....-+.+. -..
T Consensus 364 ~~d~~l~~~~~k~~~~l~~h-~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~ 439 (1516)
T KOG1832|consen 364 LDDSPLLPDVMKLICALAAH-RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQ 439 (1516)
T ss_pred cccccccHHHHHHHHHHHHh-hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHH
Confidence 44555567788888888876 5777889999999877665332 2233333456666666544332222 123
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
++..-+.+|.+.....+.+++-..+.... -...-+.|-...+++.|+.+|+.-
T Consensus 440 vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l~~l~~~~~~~ 492 (1516)
T KOG1832|consen 440 VVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSLQKLLAILKDA 492 (1516)
T ss_pred HHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44555666776655555555544332222 223556666778899999888653
No 218
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.44 E-value=22 Score=29.64 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 040681 202 PLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE 281 (594)
Q Consensus 202 ~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~ 281 (594)
..+..|.++. +.+|-++...|+.|....+ ...+-..+.+..+...|++++.-|--+|...|..|+...|.
T Consensus 7 ~al~~L~dp~-~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------- 76 (92)
T PF10363_consen 7 EALSDLNDPL-PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------- 76 (92)
T ss_pred HHHHHccCCC-cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------
Confidence 3456677777 8899999999999987555 11222345677888889999999999999999999987652
Q ss_pred CChhhHHHhhhc
Q 040681 282 NVIRPLVTLLSF 293 (594)
Q Consensus 282 g~i~~Lv~lL~~ 293 (594)
.+++.|++...+
T Consensus 77 ~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 EVLPILLDEYAD 88 (92)
T ss_pred HHHHHHHHHHhC
Confidence 256666665433
No 219
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.86 E-value=33 Score=31.15 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=55.6
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCCh--hHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQ--ERVRVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~--~~~~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~ 269 (594)
+..|.+-|.+++ +.++..|+..|-.+..+. .....|.....+..|++++.. .++.|+..+...|...+.
T Consensus 39 ~ral~KRl~~~n-~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 39 LKAIMKRLNHKD-PNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 444555566777 999999999999888743 346777788889999999988 599999999999988875
No 220
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=60.85 E-value=2.4e+02 Score=30.33 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=52.3
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+|.|++-.+..+.+.+.+...+|..|.. +-| ...+..+ .+.+++.|++-|...+ .+++..++.+|..+.
T Consensus 324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~---~vP---~~vl~~~---l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 324 VLPKLLEGFKEADDEIKSNYLTALSHLLK---NVP---KSVLLPE---LPTLLPLLLQSLSLPD-ADVLLSSLETLKMIL 393 (415)
T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHh---hCC---HHHHHHH---HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence 56777777777777788888999988873 322 1122222 3458888888886555 778889999988888
Q ss_pred cCChh
Q 040681 468 RTFPA 472 (594)
Q Consensus 468 ~~~~~ 472 (594)
...+.
T Consensus 394 ~~~~~ 398 (415)
T PF12460_consen 394 EEAPE 398 (415)
T ss_pred HcCHH
Confidence 66543
No 221
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.29 E-value=24 Score=38.82 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=51.1
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHH
Q 040681 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPT 244 (594)
Q Consensus 165 L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~ 244 (594)
++.++.++|+.|+.+|+.+|.++. ..++..+++|..+.++.++...+-+|+..+...-.+. ++..
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~di 625 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDI 625 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHH
Confidence 345666777777777777766532 3455566666655447777777777776554211111 2333
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 245 IVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 245 Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
|-.+..+.+.-||+.|..+++-+.
T Consensus 626 L~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 626 LEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHH
Confidence 344445556667777766666554
No 222
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.57 E-value=39 Score=38.28 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh----ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhh
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET----RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEH 514 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~ 514 (594)
.+..+++-..+.+ ..|+-.++..|..|......... +....+..-|.++.+.|+.+|+.+|+.+-.+.+ +++
T Consensus 86 ~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~--dee- 161 (892)
T KOG2025|consen 86 TFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK--DEE- 161 (892)
T ss_pred HHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC--CCc-
Confidence 3444444444333 78999999999988863222222 556777777789999999999999999963221 111
Q ss_pred HHHHHHcCChHHHHHhccCCc-h-HhHhHH
Q 040681 515 SKAIIEFNAVPPLMRLLRGND-R-TQLHGL 542 (594)
Q Consensus 515 ~~~i~~~g~i~~Lv~lL~~~~-~-vq~~Al 542 (594)
...+..+..++...+ + |+..|+
T Consensus 162 ------~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 162 ------CPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred ------ccHHHHHHHHHhcCCcHHHHHHHH
Confidence 245566777777443 2 888887
No 223
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=59.51 E-value=8.2 Score=24.42 Aligned_cols=27 Identities=41% Similarity=0.520 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 491 EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 491 ~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
.|+.+|+++|+++.. ..+++.|++.|.
T Consensus 2 ~vR~~aa~aLg~~~~---------------~~a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGD---------------EEAVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCC---------------HhHHHHHHHHhc
Confidence 588999999999844 235677777665
No 224
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.86 E-value=95 Score=33.85 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHH-HHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhh
Q 040681 352 NEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLA-KLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFK 430 (594)
Q Consensus 352 ~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~-~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~ 430 (594)
..||.. ..+..|++.|.+.+.+-|+-++..... .+..++ .|....+.+|+..+..+|.-+.-..+ +.++.. .|
T Consensus 267 a~dp~a--~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-~~~l~~-~~- 340 (533)
T KOG2032|consen 267 ATDPSA--KSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-NDDLES-YL- 340 (533)
T ss_pred ccCchh--HHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-hcchhh-hc-
Confidence 345554 568899999999988855433333222 233333 33344457888888888865542222 223333 12
Q ss_pred cCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC-hhhhhcc-------HHHHHHhccCCCHHHHHHHHHHHHH
Q 040681 431 TNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF-PARETRV-------IGPLVAHLSHRNQEVATEAAIALQK 502 (594)
Q Consensus 431 ~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~-~~~~~~~-------i~~Lv~lL~~~~~~v~~~Aa~aL~n 502 (594)
..+..++..+.++.+ +.++..+...+|.|+.-- ..-+.++ ..+|+-.|.+.++.+. .||.....
T Consensus 341 ------l~ialrlR~l~~se~-~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~ 412 (533)
T KOG2032|consen 341 ------LNIALRLRTLFDSED-DKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELR 412 (533)
T ss_pred ------hhHHHHHHHHHHhcC-hhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHH
Confidence 236667778888777 899999999999888421 1111122 2233334567777654 56777776
Q ss_pred hcC
Q 040681 503 FAS 505 (594)
Q Consensus 503 l~~ 505 (594)
++.
T Consensus 413 ~c~ 415 (533)
T KOG2032|consen 413 TCY 415 (533)
T ss_pred hcC
Confidence 655
No 225
>PRK14707 hypothetical protein; Provisional
Probab=58.86 E-value=5.4e+02 Score=33.74 Aligned_cols=287 Identities=16% Similarity=0.089 Sum_probs=151.6
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh-ccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHH
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL-KETASSEAQSAAATALYNIANDQERVRVIVSELGVPTI 245 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~L 245 (594)
-.+..+...|+..|..-.-+++...+.+- .-++...+.-| |=+++......|...-..++.|++-+..+--.|.-..|
T Consensus 301 wpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~l 379 (2710)
T PRK14707 301 WADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVL 379 (2710)
T ss_pred CCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHH
Confidence 45666777777777655555566655443 33444444544 33553555555555556777888877777544444444
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccc
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFV 325 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~ 325 (594)
-.+-+-++..+...++..|..=-..+++-+..+...|+-..|-.+.+-+ +.
T Consensus 380 NalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP---d~-------------------------- 430 (2710)
T PRK14707 380 NALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP---DL-------------------------- 430 (2710)
T ss_pred hhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC---cc--------------------------
Confidence 3344455777888888888776666888888886655444443333322 10
Q ss_pred cCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-CCHHHH
Q 040681 326 GSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-EQGELQ 404 (594)
Q Consensus 326 ~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-~~~~v~ 404 (594)
..-..++.+|..--..+.+.|+.+--.+ |...+..|.+ ++..+-
T Consensus 431 ----------------------------------~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c 475 (2710)
T PRK14707 431 ----------------------------------PICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPIC 475 (2710)
T ss_pred ----------------------------------hhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhH
Confidence 0122344444432234566676654333 3333333432 444454
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh----hhh---hcc
Q 040681 405 FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP----ARE---TRV 477 (594)
Q Consensus 405 ~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~----~~~---~~~ 477 (594)
..++..|.. .+ .+++++++ +|.+ ..+...|-.+ ...+ -+..|..++.-|+..-. ... ..-
T Consensus 476 ~~aa~~La~--~l-~~~~~l~~-a~~~-----q~~~~~L~aL-SK~P---d~~~c~~A~~~lA~rl~~~~~l~~~~~~~~ 542 (2710)
T PRK14707 476 GQTASALAA--RL-AHERRLRK-ALKP-----QEVVIALHSL-SKWP---DTPICAEAASALAERVVDELQLRKAFDAHQ 542 (2710)
T ss_pred HHHHHHHHH--Hh-cccHHHHh-hcCH-----HHHHHHHHHh-hcCC---CcHHHHHHHHHHHHHhccchhhhhhhhhHH
Confidence 456666643 22 36777888 4663 2344444433 3222 22355666666653211 000 012
Q ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc-CCch
Q 040681 478 IGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDR 536 (594)
Q Consensus 478 i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~-~~~~ 536 (594)
+..+++.| +..+.+..+.|+..|..+.. +. .....-+..-.|..+++.|. +.+.
T Consensus 543 ~~~~lnalSKwp~s~~C~~A~~~iA~~l~-~~----~~~~~~L~aq~Vs~llNaLSKWP~~ 598 (2710)
T PRK14707 543 VVNTLKALSKWPDKQLCAVAASGLAERLA-DE----PQLPKDLHRQGVVIVLNALSKWPDT 598 (2710)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhh-cc----hhhHHhhhhhHHHHHHHhhccCCCc
Confidence 33344444 45566677778777777654 22 22223344556777777666 4443
No 226
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=58.81 E-value=60 Score=28.87 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCChHHHHHhhccC--CCHHHHHHHHHHHHHhhC
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDR-NKKIIVEEGGVPPLLKLLKET--ASSEAQSAAATALYNIAN 228 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~-~~~~i~~~g~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~ 228 (594)
.+..+-.+|+++++.++..|+..|-.+.+++.. +...|.....+..|++++... .++.++..+...+...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455567789999999999999999988887644 777777777777899999763 348999999999988875
No 227
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.42 E-value=48 Score=29.53 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCC-HHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETAS-SEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~-~~v~e~A~~aL~~La~ 228 (594)
..+..+-.+|+++++.++..|+..|-.+.+++ +.....|...+.+..|+++++.... +.++..+...+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34556777999999999999999998888873 5677888888899999999987643 3489988888887765
No 228
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=56.07 E-value=2.3e+02 Score=32.41 Aligned_cols=252 Identities=15% Similarity=0.234 Sum_probs=135.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
.+.-++..+.+.|.+=...|.+.. +..-+.|+..-.+|.|+..+.-++ ..+. +..+..+..+-+... ++.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~----ltpl~k~~k~ld~~e--yq~ 329 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDF----LTPLFKLGKDLDEEE--YQV 329 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhh----hhHHHHhhhhccccc--ccc
Confidence 445556677777776666665522 333455666667777777766554 1222 223333333211111 566
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+.+|.|+++++..+..+|-.-..=+-+... .....+.+.-.++.+..-+.+.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DT------------------------- 381 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDT------------------------- 381 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccC-------------------------
Confidence 788999999988877777543332222221 1222223333444444433322
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
+| -+++.....+..|+. ..-+.......+..|.++-.++
T Consensus 382 ----------------------------------n~----~Lre~Tlksm~~La~---kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 382 ----------------------------------NA----TLREQTLKSMAVLAP---KLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred ----------------------------------CH----HHHHHHHHHHHHHHh---hhchhhhcHHHHHHHHhhCccc
Confidence 11 123333444444431 0011112222466666666666
Q ss_pred CHHHHHHHHHHHHHHHHHhcC-CHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--hc
Q 040681 400 QGELQFNCLMTIMEITAAAES-NADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--TR 476 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~-~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--~~ 476 (594)
++.++.+..-||..|+ .. .+..|+. + .+-...+-+++.- ...+..+..+++.....++..+ ..
T Consensus 421 ~~~irtntticlgki~---~~l~~~~R~~-v---------L~~aftralkdpf-~paR~a~v~~l~at~~~~~~~~va~k 486 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIA---PHLAASVRKR-V---------LASAFTRALKDPF-VPARKAGVLALAATQEYFDQSEVANK 486 (690)
T ss_pred cCcccccceeeecccc---cccchhhhcc-c---------cchhhhhhhcCCC-CCchhhhhHHHhhcccccchhhhhhh
Confidence 6788988888887765 33 2222331 1 2223333333222 5667778888877776655433 37
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+.|.++-+.-+.+..++..|=.++.-+-
T Consensus 487 Ilp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 487 ILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccccccccccCcccchhhHHHHHHHHHH
Confidence 7888888888888888888777776653
No 229
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.94 E-value=93 Score=38.51 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=68.0
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+..++..|..+...++..|..||.+|. +-++.++. +.....++...+. ..+..|+++|+..+|...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~iv---e~Dp~vL~-----~~dvq~~Vh~R~~-----DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIV---EADPSVLS-----RPDVQEAVHGRLN-----DSSASVREAALDLVGRFV 883 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHH---hcChHhhc-----CHHHHHHHHHhhc-----cchhHHHHHHHHHHhhhh
Confidence 4666667777677889999999999887 54543322 1000111222222 123778888888888776
Q ss_pred cCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 468 RTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 468 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
...+..-......+.+-..+...-||+.+...++.++. ++
T Consensus 884 l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~-e~ 923 (1692)
T KOG1020|consen 884 LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICE-ET 923 (1692)
T ss_pred hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hC
Confidence 55554434556666666677777888888888888765 44
No 230
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=55.76 E-value=6.5 Score=24.49 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhcCChhhhhccHHHHHHhcc
Q 040681 455 LQIPAIKSIGSLARTFPARETRVIGPLVAHLS 486 (594)
Q Consensus 455 v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~ 486 (594)
|+..|+.+||++. ....+++|++.|+
T Consensus 1 VR~~Aa~aLg~ig------d~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIG------DPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC------CHHHHHHHHHHhc
Confidence 3556667777665 2456677766653
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.28 E-value=1e+02 Score=31.60 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++.+.++.|.+.+ +.....++..|..|+...+..- ..+|..+++-+++....|.+.||.++..+.+
T Consensus 88 ~al~~~l~~L~s~d-W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 88 AALKQALKKLSSDD-WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHHHhchHH-HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 36667777777666 9999999999999997665321 1568888888999999999999999999865
No 232
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.19 E-value=48 Score=29.97 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=55.4
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhh
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~ 269 (594)
++..|.+-|++++ +.++..|+..|-.+..+ ......+.+.+.+..|++++.. .++.|+..+...+..-+.
T Consensus 42 a~ral~krl~~~n-~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKN-PNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4555666677777 99999999988888874 3346777788889999999974 488999999999988864
No 233
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=54.06 E-value=2e+02 Score=33.93 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=74.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhh-ccCCCHHHHHHHHHHHHHhhC-ChhH-HHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLL-KETASSEAQSAAATALYNIAN-DQER-VRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~La~-~~~~-~~~i 236 (594)
+-..+.+.+-..|.+|+..+....... . ..... ..|-+..+++.. ++.+ ..+...|+..|..|+. .... +...
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~-~-~~~~~~~~~ll~~~~ki~~kDaN-~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEA-K-KEIVKGYTGLLGILLKIRLKDAN-INVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhcc-c-cccccCcchHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 334556778889999999998888653 2 11111 123355555543 3445 7888889999999886 3332 2222
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCC
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFET 295 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 295 (594)
.+..|.|..-+++-...+++.+..++-..+...+ -...++.....+.+++
T Consensus 335 --~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~kn 384 (815)
T KOG1820|consen 335 --KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKN 384 (815)
T ss_pred --HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCC
Confidence 4578888888888877777766666655543221 1123445555665554
No 234
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.60 E-value=4.9e+02 Score=31.69 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=62.4
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-Ch-hHHHHHHhcCC
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEE--GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQ-ERVRVIVSELG 241 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~--g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~-~~~~~iv~~g~ 241 (594)
++.+...|.++-.-|..++.. +.....+.+. ..-..|..-+++.. ...+.....+|..|-. .+ +....+.. .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPK--L 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHH--H
Confidence 455778899999999888876 3322222211 11222333334444 5677777777777765 33 44454443 3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
||-++-.++..+...++++..+|..|+
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHH
Confidence 566666667779999999999999998
No 235
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=52.83 E-value=74 Score=35.41 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=66.9
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
|.+..++.-+++.+..++.+++..|+-+...-.. +-.. . ..++++.|.+-+-... +.|+..|+.+|..+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e---IDe~--l-----~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~ 159 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE---IDEV--L-----ANGLLEKLSERLFDRE-KAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch---HHHH--H-----HHHHHHHHHHHHhcch-HHHHHHHHHHHHHH
Confidence 4455566666778889999999999877633211 1111 0 1234455544333233 78999999999988
Q ss_pred hcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
-....+.+..+...|+.++ .+++.+|++.| |.|+..
T Consensus 160 Qe~~~neen~~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 160 QEMELNEENRIVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred HhccCChHHHHHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 7655545556677777777 56788899885 455544
No 236
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=52.74 E-value=4.6e+02 Score=31.05 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh--CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK--EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
......+|...++-+++ -....++...|.++.+..+ +++-+-..+-.++-.++..+. .-.|-....
T Consensus 547 l~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-----------~~g~m~e~~ 614 (1005)
T KOG2274|consen 547 LVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-----------NYGPMQERL 614 (1005)
T ss_pred HHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-----------hhcchHHHH
Confidence 44456778888777766 3334556677887777653 445444445555555552221 112345668
Q ss_pred HHHHHHHHhcCCC---hhhHHHHHHHHHHhhcCChhh--hh---ccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 440 VDQLLRVINDLDS---PTLQIPAIKSIGSLARTFPAR--ET---RVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 440 v~~Ll~lL~s~~~---~~v~~~a~~aL~~La~~~~~~--~~---~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++.++.+|....+ .....-++-.|..+-+..+.. +. .+.|++.+.. ++++.++-..+-.+|..+..
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 9999999986652 445566777777777655432 11 4568888765 88888888889999988876
No 237
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=52.64 E-value=56 Score=29.46 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=54.1
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhh
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSD------SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~------~~~~v~~~aa~aL~~La~ 269 (594)
++..|.+-|++++ +.++..|+..|-.+..+ ......|...+.+.-|++++.. .+..|+..+...+..-+.
T Consensus 39 a~rai~krl~~~n-~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQ-EKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444556677777 99999999988888863 3356777788889999999953 378999999998887764
No 238
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.62 E-value=70 Score=28.99 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
..+.-+..+|+++++.++..|+.-|-.+.+++. .....|...+.+..|++++....++.++..+...+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 345567789999999999999999988888654 5777888888899999999884348999999999888774
No 239
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=51.52 E-value=2.7e+02 Score=28.02 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHhhCcHHHHHHHhhhCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHH
Q 040681 383 ISETKGLLCLAKLVEKEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIP 458 (594)
Q Consensus 383 i~e~g~l~~L~~LL~~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~ 458 (594)
+.-...+|.++.-++.++ ...-..+|..|+.+|... +.+++.+ ++....++...+...-
T Consensus 107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-~~~~La~----------------il~~ya~~~fr~~~df 169 (262)
T PF14225_consen 107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-GLPNLAR----------------ILSSYAKGRFRDKDDF 169 (262)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-CCccHHH----------------HHHHHHhcCCCCHHHH
Confidence 333445777777776666 123345677777766221 2222222 1222222221222222
Q ss_pred HHHHHHHhhcCC-hhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 459 AIKSIGSLARTF-PARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 459 a~~aL~~La~~~-~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
...+...|+..+ +.....++..|..+|.++..-++......|..+.. +.+.++. ...+-|.+|.++|..+
T Consensus 170 l~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~-----~~d~~~~-~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 170 LSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLP-----HVDMRSP-HGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc-----cccCCCC-cchHHHHHHHHHhCCc
Confidence 233333334333 55667888999999999999999999999998866 2233333 4445788999988654
No 240
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.51 E-value=74 Score=28.27 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=54.4
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-h-HHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhh
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIANDQ-E-RVRVIVSELGVPTIVNVLSD---SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~-~~~~iv~~g~i~~Lv~lL~~---~~~~v~~~aa~aL~~La~ 269 (594)
++..|.+-|++++ +.++..|+..|-.+..+. . ....+.....+..|++++.. .++.|+..+...+...+.
T Consensus 38 a~raL~krl~~~n-~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGN-PHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455666677777 999999999999888743 3 45666666778889999975 388999999999988875
No 241
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=50.05 E-value=62 Score=28.84 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=52.8
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcCC-C-HHHHHHHHHHHHHHhh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSDS-I-MKVQIQVASLVARMAE 269 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~~-~-~~v~~~aa~aL~~La~ 269 (594)
+..|.+-|++++ +.++..|+..|-.+..+ +.....+...+.+..|++++... + +.|+..+...+..-+.
T Consensus 39 ~r~l~krl~~~n-~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKN-PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 334555667777 99999999999988874 33467777888899999999876 3 3499999988887764
No 242
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.86 E-value=75 Score=26.41 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCh-h--hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFP-A--RETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~-~--~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..+..+.+.. +.+|..++..|++|..... . ...+++..+...|.+.++.|--.|..+|..++.
T Consensus 6 ~~al~~L~dp~-~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 6 QEALSDLNDPL-PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHccCCC-cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 33444554433 7899999999999997665 2 223677888888899999999999999999976
No 243
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=49.71 E-value=1.1e+02 Score=32.60 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHHhhcCH
Q 040681 203 LLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL----------SDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 203 Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL----------~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
+.+.|..+.....+......+.-|++|.+.-.-+...--+..|..+- ..+++.+.-.+..+|.|+.-+++
T Consensus 50 i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq 129 (532)
T KOG4464|consen 50 IFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQ 129 (532)
T ss_pred HHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccH
Confidence 34445444434445556666667776554322222111222222221 11256788889999999999999
Q ss_pred HhHHHHHHcCChhhHHHhhhcC
Q 040681 273 LAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 273 ~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
.+|+.+.+......+++.+...
T Consensus 130 ~~q~~~~~~~~~~~ll~~v~~~ 151 (532)
T KOG4464|consen 130 RAQDLFLENPLTGKLLQRVLGE 151 (532)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999887777777766544
No 244
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.49 E-value=65 Score=30.51 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++.++++..+.+ ..++..|+..++-+.+.+=..-...+|.|+.+..+.++.++..|-..+..+..
T Consensus 8 ryl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 8 RYLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 35566666555544 88999999999998875544445679999999999999999999999988843
No 245
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.38 E-value=1e+02 Score=34.35 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh----hccHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCccchh
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE----TRVIGPLVAHLSHRNQEVATEAAIALQKFASP-ENFLCTE 513 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~-~~~l~~~ 513 (594)
.+..+++-+.+.+ ..|+..++..|.-+........ .+.+..|.+-+-++++.|+.+|+.+|+.+-.. +| ++
T Consensus 92 ~~~h~lRg~eskd-k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n---ee 167 (885)
T COG5218 92 TFYHLLRGTESKD-KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN---EE 167 (885)
T ss_pred HHHHHHhcccCcc-hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC---hH
Confidence 4455555555444 7888889988888886443322 26677777778899999999999999998531 22 22
Q ss_pred hHHHHHHcCChHHHHHhccCCch--HhHhHH
Q 040681 514 HSKAIIEFNAVPPLMRLLRGNDR--TQLHGL 542 (594)
Q Consensus 514 ~~~~i~~~g~i~~Lv~lL~~~~~--vq~~Al 542 (594)
+. ....|+.++...+. |+..|+
T Consensus 168 n~-------~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 168 NR-------IVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HH-------HHHHHHHHHhcCcHHHHHHHHH
Confidence 21 22345555554433 777777
No 246
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.77 E-value=89 Score=28.15 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhC
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKE-----TASSEAQSAAATALYNIAN 228 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~ 228 (594)
.+.-+..+|+++++.++..|+..|-.+.+++ +.....|...+.+.-|++++.. ..+..|+...+..+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4555777999999999999999888888754 5677888888889999999963 1238999999888887764
No 247
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.68 E-value=60 Score=29.14 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHH---HHHHHHHHHHHhhC
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSE---AQSAAATALYNIAN 228 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~---v~e~A~~aL~~La~ 228 (594)
.+..+-.+|.++++.++..|+..|-.+.+++ +.....+.....+..|.+++....... |++.+...|...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4555677999999999999999998888875 677788877778888999887754344 88888888877764
No 248
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=46.94 E-value=60 Score=31.19 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
++...+.+.|..+|.++.+|+..+.+. ++.+...+.......-..+..++..+- .+|..+... +. +..
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~---~dN~~L~~~-i~------e~~ 143 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIF---RDNPELCES-IS------EEH 143 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHH---TT-------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHH---HCcHHHHHH-hh------HHH
Confidence 456788999999999999999988763 443333333221111123455554443 677766663 22 225
Q ss_pred HHHHHHHHhc
Q 040681 440 VDQLLRVIND 449 (594)
Q Consensus 440 v~~Ll~lL~s 449 (594)
++.++.+|..
T Consensus 144 I~~~i~ll~~ 153 (207)
T PF01365_consen 144 IEKFIELLRK 153 (207)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6777777765
No 249
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=46.82 E-value=92 Score=32.93 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=66.8
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
|..++.=|+++.+..++..++--|+.-+.+++.+..+...|....+++.+... +..+...++.++..+-..+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 45555555655557888888888888888999999999999999999999554 44366656555555544443455555
Q ss_pred HHcCChhhHHHhhh
Q 040681 279 ARENVIRPLVTLLS 292 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~ 292 (594)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 56667777788887
No 250
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.21 E-value=5.4e+02 Score=30.39 Aligned_cols=159 Identities=11% Similarity=0.094 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
++..+...|..+.. +.+-+..+...+++..+...|++.+.-+-.+|...+..||.+- + +.++
T Consensus 743 ik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy---~--------------e~il 804 (982)
T KOG4653|consen 743 IKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY---P--------------EDIL 804 (982)
T ss_pred chHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc---c--------------hhhH
Confidence 56677777777754 2344677788899999999999999888888888777777331 1 1155
Q ss_pred HHHHHHHhcCCC---hhhHHHHHHHHHHhhcCChhhhh----ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchh
Q 040681 441 DQLLRVINDLDS---PTLQIPAIKSIGSLARTFPARET----RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTE 513 (594)
Q Consensus 441 ~~Ll~lL~s~~~---~~v~~~a~~aL~~La~~~~~~~~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~ 513 (594)
+.|.....+... ++-+...-.+++++++.-...-. ..+....+..++.+..-|..++..+++++. -+ .--
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq-~~--a~~ 881 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ-LL--AFQ 881 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH-HH--hhh
Confidence 666653332221 23333344666666643222111 334555555676767778888888888754 11 001
Q ss_pred hHHHHHHcCChHHHHHhccCCc-h-HhHhHH
Q 040681 514 HSKAIIEFNAVPPLMRLLRGND-R-TQLHGL 542 (594)
Q Consensus 514 ~~~~i~~~g~i~~Lv~lL~~~~-~-vq~~Al 542 (594)
....+.+ ....++.+...++ . ++++|.
T Consensus 882 vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv 910 (982)
T KOG4653|consen 882 VSDFFHE--VLQLILSLETTDGSVLVRRAAV 910 (982)
T ss_pred hhHHHHH--HHHHHHHHHccCCchhhHHHHH
Confidence 1222222 4556666666444 3 777777
No 251
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=45.12 E-value=2.6e+02 Score=27.87 Aligned_cols=100 Identities=8% Similarity=0.110 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhC--cHHHHHHHhhhC----CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChh
Q 040681 362 KIACAEALWMLARGSVANSRRISETK--GLLCLAKLVEKE----QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPA 435 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g--~l~~L~~LL~~~----~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~ 435 (594)
.-.+.+++.|+.. ++..+..+.... .+...+..+... +..++..++..+.|++.....+.. ....
T Consensus 127 ~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~--------~~~~ 197 (268)
T PF08324_consen 127 QMLALRLLANLFS-HPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS--------DEEW 197 (268)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS---------CCH
T ss_pred HHHHHHHHHHhhC-CCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC--------ChHH
Confidence 4457899999864 555566555432 233333333333 678999999999999744432210 1111
Q ss_pred hHHHHHHHHHH-HhcCCChhhHHHHHHHHHHhhcCC
Q 040681 436 AKAVVDQLLRV-INDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 436 ~~~~v~~Ll~l-L~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
...++..+... .....+++..-.++-+||+|....
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 22356666663 333355888889999999999544
No 252
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.47 E-value=1.4e+02 Score=28.74 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=51.2
Q ss_pred hHhhhHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHH
Q 040681 5 IEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRVVSEVSKNLERS 84 (594)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~ 84 (594)
-|++.|+.++....+.+.+- +..||.||+-|+.-...|+..+- .++.-++.|-...+..++++|+..
T Consensus 23 ~Md~sv~~l~~~~~e~~kk~------~~~~KkEyqkiG~af~~LsqaF~-------~d~~~~s~~L~~Av~~tg~~y~~I 89 (207)
T cd07670 23 KMDESVLQLNHTANEFARKQ------VTGFKKEYQKVGQSFKGLSQAFE-------LDQQAFSAGLNQAIAFTGEAYEAI 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHHHHc-------cCCcccchHHHHHHHHHHHHHHHH
Confidence 47777777777666555432 45799999999888877777643 223345556788888899999887
Q ss_pred HHHHHh
Q 040681 85 LTLVRK 90 (594)
Q Consensus 85 ~~l~~~ 90 (594)
-.++..
T Consensus 90 G~~fae 95 (207)
T cd07670 90 GELFAE 95 (207)
T ss_pred HHHHHh
Confidence 765553
No 253
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=44.01 E-value=46 Score=32.43 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC----CCHHHHHHHHHHHHHhhCCh--hHHHHHHhcCCHHHHH
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET----ASSEAQSAAATALYNIANDQ--ERVRVIVSELGVPTIV 246 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~----~~~~v~e~A~~aL~~La~~~--~~~~~iv~~g~i~~Lv 246 (594)
...|+.-|.-++.+ |+.++.++++..--.|-.+|... ..+-++..+..+++.|..++ +....+.....+|..+
T Consensus 117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34566777777766 89999988877544444444322 22567888999999998743 3456666788999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 247 NVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 247 ~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
++++.++.--+..++.++..+-.+|
T Consensus 196 rIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999999888998998888887655
No 254
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=43.22 E-value=31 Score=29.55 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 040681 216 QSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQI 258 (594)
Q Consensus 216 ~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~ 258 (594)
.......+..|+..|+.-..+++.|+++.|+.+|.+.+.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456778899999999889999999999999999988777643
No 255
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=42.57 E-value=78 Score=35.99 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=58.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC--CCHHHHHHHHHHHHHhhCChhHHHHHHhcCC
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET--ASSEAQSAAATALYNIANDQERVRVIVSELG 241 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~ 241 (594)
....++.+.+.-++.+|+|+... ..++.|..++... .+..++..|++||..++..... .+
T Consensus 498 ~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v 559 (618)
T PF01347_consen 498 AVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KV 559 (618)
T ss_dssp HHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HH
T ss_pred HhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HH
Confidence 34567888999999999999653 4678888877665 2378999999999988663211 12
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHH
Q 040681 242 VPTIVNVLSDS--IMKVQIQVASLVAR 266 (594)
Q Consensus 242 i~~Lv~lL~~~--~~~v~~~aa~aL~~ 266 (594)
.+.|..++.+. +.++|-.|..+|..
T Consensus 560 ~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 560 REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 45566777654 78888888777665
No 256
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=41.55 E-value=57 Score=29.75 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 216 QSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 216 ~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
...|+..|+.+-+. =-|.+|+.+|.+.+.++...|+.+|.+---
T Consensus 80 ~~~Av~LLGtM~GG----------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGG----------YNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SS----------TTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCC----------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 45566666665431 138999999988889999999999887654
No 257
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=41.48 E-value=2e+02 Score=28.71 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=53.9
Q ss_pred hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCH
Q 040681 196 EEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 196 ~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~ 272 (594)
+..+.|+|+++++.++ .-+ -..++-... +-...-..+-.|-+++|-++++++ +.-+|..|..+|..++..++
T Consensus 71 e~~A~~~li~l~~~~~-~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 71 EERALPPLIRLFSQDD-DFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhHHHHHHHHcCCc-chH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3468999999998765 210 112222111 111223333467799999999988 56699999999999999888
Q ss_pred HhHHHHHH
Q 040681 273 LAQDDFAR 280 (594)
Q Consensus 273 ~~~~~i~~ 280 (594)
..|+.+.+
T Consensus 146 ~~Re~vi~ 153 (249)
T PF06685_consen 146 ISREEVIQ 153 (249)
T ss_pred CCHHHHHH
Confidence 77777754
No 258
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.07 E-value=6.4e+02 Score=30.65 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=85.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHH----hhCChhHHHHHHhc
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYN----IANDQERVRVIVSE 239 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~----La~~~~~~~~iv~~ 239 (594)
.|...+.+.+...+..+..+-.-+++|..+.-+.-.+|.|+--+.... ..+|......|-. +..-+ .++
T Consensus 475 FLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvP-eqE----- 547 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVP-EQE----- 547 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCc-HHH-----
Confidence 455677777888888888887777999999888899999988776543 4455444443322 11111 111
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 240 LGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 240 g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+-.|+-+|+.+ +...+........+|-..+...++.+++-|.+..|-..++.+
T Consensus 548 --LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqh 601 (2799)
T KOG1788|consen 548 --LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQH 601 (2799)
T ss_pred --HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 23466778877 666777777777777777878999999999999998887664
No 259
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=40.73 E-value=1.5e+02 Score=33.78 Aligned_cols=135 Identities=12% Similarity=0.159 Sum_probs=88.0
Q ss_pred HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
+.+.++|.|..-+++.+..+|..++..+-....... -+.+++ .+++.+..+-..+....++..++-|+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~-----------~ilP~l~~l~~~tt~~~vkvn~L~c~ 453 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQ-----------AILPRLKNLAFKTTNLYVKVNVLPCL 453 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHH-----------HHHHHhhcchhcccchHHHHHHHHHH
Confidence 445568888888888888999988888766553322 222333 36677766644455588999999999
Q ss_pred HHhhcCChhhh-hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 464 GSLARTFPARE-TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 464 ~~La~~~~~~~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+.+...-+... ...+.++.+.....++.+...-..+.-++.. ..+ +. +.+.-..++|.++.+...+.
T Consensus 454 ~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~-~~~---~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 454 AGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL-IIY---SG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh-hcc---cc-eeeehhhhhhhhhhhhhccc
Confidence 99983322111 1456677777788888888777777666655 221 22 34455668888887766543
No 260
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.50 E-value=1.6e+02 Score=34.30 Aligned_cols=113 Identities=10% Similarity=0.123 Sum_probs=72.8
Q ss_pred chHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-Chh
Q 040681 154 MLSWVWSY-IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQE 231 (594)
Q Consensus 154 i~~~i~~l-v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~ 231 (594)
....+|+- ...+..+++..-...+.++..++.=..-..+. +....++-..-....- ..+......+|..++. +++
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPS 514 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHH
Confidence 34567775 44667778776666777777665421111000 1111222222111111 4566677889999998 666
Q ss_pred HHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 232 RVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 232 ~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
.-..+. +.++..+++.++-+++.++.+.|...|.....
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 666666 67899999999999999999999999999875
No 261
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.88 E-value=4.5e+02 Score=27.27 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=93.8
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-------
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS------- 452 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~------- 452 (594)
++.+.+.. +..+.+-|.+....+...+...|.+|+.. ....+.+. +...-......++.++..=+....
T Consensus 50 ~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f--~~g~~a~~-v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~ 125 (330)
T PF11707_consen 50 IRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSF--DGGALARE-VLRSFDFSLKSLPKLLTPRKKEKEKDSESSK 125 (330)
T ss_pred HHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHcc--CCHHHHHH-HHHhcCCchhhHHHHhccccccccccccccc
Confidence 44444444 78888888888888888888888777632 23233331 221111111233333311111111
Q ss_pred --hhhHHHHHHHHHHhhcCChhh-------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCC
Q 040681 453 --PTLQIPAIKSIGSLARTFPAR-------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523 (594)
Q Consensus 453 --~~v~~~a~~aL~~La~~~~~~-------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~ 523 (594)
+++|...++.+..+....+.. +.+.+..+.+-|..++.++......+|..-+..+..+....+-.+.....
T Consensus 126 ~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~ 205 (330)
T PF11707_consen 126 SKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWT 205 (330)
T ss_pred cCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHH
Confidence 178888888888877655431 22668899999999999999999999986444343356666777778888
Q ss_pred hHHHHHhccCC
Q 040681 524 VPPLMRLLRGN 534 (594)
Q Consensus 524 i~~Lv~lL~~~ 534 (594)
+..|..+....
T Consensus 206 L~~l~~Ly~~~ 216 (330)
T PF11707_consen 206 LSQLASLYSRD 216 (330)
T ss_pred HHHHHHHhccc
Confidence 99999966643
No 262
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=39.13 E-value=3.8e+02 Score=26.25 Aligned_cols=125 Identities=22% Similarity=0.182 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
++.....+|+.++..+..+... ++..|..+.+.+..+.+.-+...+..+- ..++ + .| +.+
T Consensus 17 ~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw---~~~~---r-~f--------~~L 76 (234)
T PF12530_consen 17 LQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLW---KAND---R-HF--------PFL 76 (234)
T ss_pred HHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHH---HhCc---h-HH--------HHH
Confidence 3556788999998644121211 3556666666666665443444443332 3333 2 11 133
Q ss_pred HHHHHH-----Hh----cCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 441 DQLLRV-----IN----DLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 441 ~~Ll~l-----L~----s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++.. .. .....+.....+.++..+|...+..-..+++.+...| ++.++.++..+..+|..++.
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 333322 11 1112455566667888888777664456789999999 78888888888888888864
No 263
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.14 E-value=7e+02 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=28.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL 273 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~ 273 (594)
+.+..++.+|+++...+|..|..+|+.+...+|.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~ 849 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS 849 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH
Confidence 3577788889988999999999999999887763
No 264
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.89 E-value=2.8e+02 Score=24.74 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=61.0
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChh---hHHHHHHHHH
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPT---LQIPAIKSIG 464 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~---v~~~a~~aL~ 464 (594)
++..|.+-|.++++.++..|+..|-.+..-+ .+.++.. +. .+.+++.|.+++.+..... |++.+...|.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNc--g~~f~~e-v~-----~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNC--GPRFHRE-VA-----SKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS--HHHHHHH-HT-----SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHH-Hh-----HHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 5778888899999999999988886655221 2345552 32 3569999999988776544 8889998888
Q ss_pred HhhcCChhh-hhccHHHHHHhc
Q 040681 465 SLARTFPAR-ETRVIGPLVAHL 485 (594)
Q Consensus 465 ~La~~~~~~-~~~~i~~Lv~lL 485 (594)
..+..+... +...+..+.+.|
T Consensus 115 ~W~~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 115 EWAEAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp HHHHHTTTSTTGHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHH
Confidence 888766321 223444444433
No 265
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.98 E-value=1.3e+02 Score=31.35 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHhcC--CHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 214 EAQSAAATALYNIANDQERVRVIVSEL--GVPTIVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 214 ~v~e~A~~aL~~La~~~~~~~~iv~~g--~i~~Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
.++..|...|..+..++..-..++..+ .+..|+.+++-+ +.+++..|..+|..|+.+...+.+.+..
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~a 308 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRA 308 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 456666666766666677777777766 899999999865 7889999999999999876555554443
No 266
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.88 E-value=45 Score=34.73 Aligned_cols=62 Identities=8% Similarity=-0.050 Sum_probs=52.8
Q ss_pred HHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 219 AATALYNIAN-DQERVRVIVSELGVPTIVNVL--SDSIMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 219 A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL--~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
..+.+++|+. +++..+.+.+.||++.++.-- .+.+|-+++.+.-++.+|.+++.++|+.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4568888886 888999999999999877644 3458999999999999999999899998865
No 267
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=35.85 E-value=46 Score=39.09 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhc
Q 040681 453 PTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLL 531 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL 531 (594)
+-++..+.-+|+++|........+.+|.||+-| .+....++-+.+.|++.|+. ...+.-..-||.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~---------~YTam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICS---------SYTAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHH---------HHHHHHHHhhHHHHHHh
Confidence 457788999999999877777778999999988 45566677777777777755 33344445889999999
Q ss_pred cCCch-HhHhHH
Q 040681 532 RGNDR-TQLHGL 542 (594)
Q Consensus 532 ~~~~~-vq~~Al 542 (594)
...++ +++.++
T Consensus 1016 ~Dp~~iVRrqt~ 1027 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTI 1027 (1529)
T ss_pred cCchHHHHHHHH
Confidence 98888 888777
No 268
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.56 E-value=79 Score=37.04 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCC--HHHHHHHHHHHHHhhC-ChhHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETAS--SEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~--~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+-+++.|...|..+|..+..++.-+....+.....=+ .-.||.|+.+=++.++ ..+++.|..+|..|.+ -|..+-
T Consensus 911 lPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l 989 (1030)
T KOG1967|consen 911 LPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL 989 (1030)
T ss_pred HHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc
Confidence 34467788899999999999999877665443322111 1247777777666552 6789999999999998 555544
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASL 263 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~a 263 (594)
.-....++..|++.|.++.--||..|+.+
T Consensus 990 ~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 990 LSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 44455568889999998877788888765
No 269
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.42 E-value=92 Score=29.89 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHhhcCC---C---------------HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 233 VRVIVSELGVPTIVNVLSDS---I---------------MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~---~---------------~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
...+.+.|++..++.+|+.+ . .++...+...|..+|..+++++..+.++ ++.++..+...
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh
Confidence 34444677777777777543 1 3677889999999999998999988763 44333332211
Q ss_pred CcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc
Q 040681 295 TFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR 374 (594)
Q Consensus 295 ~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~ 374 (594)
.. . . -..+..+|..+-.
T Consensus 114 ~~-~------------------------------------------------------~--------~~~~~d~l~~i~~ 130 (207)
T PF01365_consen 114 QI-G------------------------------------------------------Y--------GLGALDVLTEIFR 130 (207)
T ss_dssp CH--------------------------------------------------------T--------THHHHHHHHHHHT
T ss_pred hc-c------------------------------------------------------C--------CchHHHHHHHHHH
Confidence 00 0 0 0113455666667
Q ss_pred CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 375 GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 375 ~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
+|.+.+..+.+.. +..++.++.......+ -...|..|+
T Consensus 131 dN~~L~~~i~e~~-I~~~i~ll~~~gr~~~--~L~~L~~lc 168 (207)
T PF01365_consen 131 DNPELCESISEEH-IEKFIELLRKHGRQPR--YLDFLSSLC 168 (207)
T ss_dssp T----------------------------------------
T ss_pred CcHHHHHHhhHHH-HHHHHHHHHHcCCChH--HHHHHhhhc
Confidence 8888888887665 9999999987433332 244555555
No 270
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=33.78 E-value=2.2e+02 Score=32.52 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=54.7
Q ss_pred HhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 195 VEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 195 ~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
.+.+.+|.|++|++..+ ..++.. .|.++-...+ --..+++.-..|.+..-+.+.++.+|+....++..|+..
T Consensus 327 yq~~i~p~l~kLF~~~D-r~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD-RQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCcc-hHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 45678999999999988 677643 3444433222 245677778899999999999999999999999888753
No 271
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=33.07 E-value=4.5e+02 Score=26.03 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcC--ChHHHHHhhccC---CCHHHHHHHHHHHHHhhCChhHHHHHHhcC--CHH
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEG--GVPPLLKLLKET---ASSEAQSAAATALYNIANDQERVRVIVSEL--GVP 243 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g--~I~~Lv~LL~~~---~~~~v~e~A~~aL~~La~~~~~~~~iv~~g--~i~ 243 (594)
+.+.=++.-+|-++.+ +.....+...+ ....+..++... .++..+.-++++++|+-.++..+..+.+.. .+.
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL 156 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence 3445555555555544 44444443332 234444444332 247888899999999999888888887533 344
Q ss_pred HHHHhhcCC----CHHHHHHHHHHHHHHhhc
Q 040681 244 TIVNVLSDS----IMKVQIQVASLVARMAEH 270 (594)
Q Consensus 244 ~Lv~lL~~~----~~~v~~~aa~aL~~La~~ 270 (594)
..+.-+... +..++..++..+.|++..
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 444444433 678999999999999863
No 272
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.11 E-value=75 Score=32.49 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=45.4
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc---c--------hhhHHHHHHcCChHHHHHhcc
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL---C--------TEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l---~--------~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
+...+..++.-|.+.+...+.+|+.+|..++. |.+- + ..+...+.+.||+++|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~-G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQ-GTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHc-CCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44788899999999999999999999999987 4331 1 233345678999999999987
No 273
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.10 E-value=85 Score=32.09 Aligned_cols=55 Identities=29% Similarity=0.406 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--------------hhHHHHHhcCChHHHHHhhcc
Q 040681 155 LSWVWSYIAAIQMGQLSDRIEAAIELASLAKDND--------------RNKKIIVEEGGVPPLLKLLKE 209 (594)
Q Consensus 155 ~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~--------------~~~~~i~~~g~I~~Lv~LL~~ 209 (594)
...|..++..|..++...|..|+.+|.-++.+.- +|...+.+.|++++|+.+|+.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3578889999999999999999999987776532 255667788999999988854
No 274
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=31.78 E-value=46 Score=28.57 Aligned_cols=41 Identities=32% Similarity=0.354 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHH
Q 040681 174 IEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQ 216 (594)
Q Consensus 174 ~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~ 216 (594)
..+...+..++.. |..-..+++.|+++.|+.||.+.+ .++.
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN-~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHEN-TDIA 104 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCC-ccee
Confidence 3456677777765 788889999999999999998877 5543
No 275
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=3.8e+02 Score=27.63 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=49.2
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
+...+..|.+.+-+.+..++..|..|+ .-+++...-. ...++-.+++-+++-. ..|-..|+.+++.+..
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs---~fh~e~l~~~-------L~~vii~vvkslKNlR-S~VsraA~~t~~difs 158 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLS---EFHPESLNPM-------LHEVIIAVVKSLKNLR-SAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHH---hhhHHHHHHH-------HHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHH
Confidence 444455555555555555555554443 3333222211 1123333344333332 4555566666666654
Q ss_pred CChhhhhccHHHHHHhc----cCCCHHHHHHHHHHHHHhcC
Q 040681 469 TFPARETRVIGPLVAHL----SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 469 ~~~~~~~~~i~~Lv~lL----~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.-...-......++..| ..++.-|+..|-.||..++.
T Consensus 159 ~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 159 SLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 33222222344444443 22333467777777777754
No 276
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=30.95 E-value=2.9e+02 Score=26.65 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=48.2
Q ss_pred hHhhhHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHH
Q 040681 5 IEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRVVSEVSKNLERS 84 (594)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~ 84 (594)
-|++.|+.+.....+.+..- +..||.||+-|+.-...|+..+- .++.-++.|-..-+..++.+|+..
T Consensus 23 ~MD~svk~l~~~~~e~~kk~------~~~~KkEyqkiG~af~~LsqaFe-------~d~~~~~~~L~~Ai~~tg~~y~~I 89 (210)
T cd07668 23 AMDDGVKELLTVGQEHWKRC------TGPLPKEYQKIGKALQSLATVFS-------TSGYQGETDLNDAITEAGKTYEEI 89 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHH------cccccHHHHHHHHHHHHHHHHHh-------cCCcccchHHHHHHHHHHHHHHHH
Confidence 47777777766655554432 45799999988887777766533 122334445677788888888887
Q ss_pred HHHHHh
Q 040681 85 LTLVRK 90 (594)
Q Consensus 85 ~~l~~~ 90 (594)
-.+...
T Consensus 90 G~~fae 95 (210)
T cd07668 90 ASLVAE 95 (210)
T ss_pred HHHHHh
Confidence 665543
No 277
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.08 E-value=1.6e+02 Score=34.56 Aligned_cols=102 Identities=8% Similarity=0.047 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCh--HHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGV--PPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIV 246 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I--~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv 246 (594)
|++.+.-|+.+|.++....+.+|..++..=+- ..=-..|..+......++...-.|+-.+ ...||..|+
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr---------~ndGIkiLl 745 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVR---------GNDGIKILL 745 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHh---------cCccHHHHH
Confidence 88999999999999988877887766532111 0000122222213444555554554333 467899999
Q ss_pred HhhcCC-----CHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 247 NVLSDS-----IMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 247 ~lL~~~-----~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
++|... ..-+|..|+.+|.-|+.++ ..++.+.+
T Consensus 746 ~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltK 783 (1516)
T KOG1832|consen 746 KLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTK 783 (1516)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHh
Confidence 999754 2348999999999999854 67777665
No 278
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=29.37 E-value=3.3e+02 Score=26.25 Aligned_cols=72 Identities=10% Similarity=0.157 Sum_probs=47.6
Q ss_pred hHhhhHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHH
Q 040681 5 IEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRVVSEVSKNLERS 84 (594)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~ 84 (594)
-|++.|+.+.....+.+..- +..||.||+-|+.-..-|+..+- .++.-++.+-..-+..|+.+|+..
T Consensus 23 ~MD~svk~l~~~~~e~~kk~------~~~~kkEyqkiG~af~~LsqaFe-------~d~~~~s~~L~~Av~~tG~~y~~I 89 (207)
T cd07669 23 KMDDSVLQLSNVASELVRKH------LGGFRKEFQKLGNAFQAISHSFQ-------LDPPYSSEALNNAISHTGRTYEAV 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH------cccccHHHHHHHHHHHHHHHHHh-------cCCCccchHHHHHHHHHHHHHHHH
Confidence 46777777666655544432 45699999988887777766633 223334445677888888888887
Q ss_pred HHHHH
Q 040681 85 LTLVR 89 (594)
Q Consensus 85 ~~l~~ 89 (594)
-.+..
T Consensus 90 G~~fa 94 (207)
T cd07669 90 GEMFA 94 (207)
T ss_pred HHHHH
Confidence 66554
No 279
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=9.8e+02 Score=27.93 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=67.7
Q ss_pred HhhCcHHHHHHHhhhC-----C---HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhh
Q 040681 384 SETKGLLCLAKLVEKE-----Q---GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTL 455 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~-----~---~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v 455 (594)
+-.|.++-+...|... + ..-.+.|...++++...-..+.-.+.. +. .=+++.++-.+++ +.--+
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~-me------~fiv~hv~P~f~s-~ygfL 476 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANV-ME------YFIVNHVIPAFRS-NYGFL 476 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHH-HH------HHHHHHhhHhhcC-cccch
Confidence 4568889999999321 1 223456677777665322222222221 00 1123333333332 22456
Q ss_pred HHHHHHHHHHhhcCChhhhh--ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 456 QIPAIKSIGSLARTFPARET--RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 456 ~~~a~~aL~~La~~~~~~~~--~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..||..+..+...++.... .+.....+.|.+.+-.|+.+|+.||.-+..
T Consensus 477 ~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 477 KSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 77888888888765553321 455666677788888899999999999877
No 280
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=28.42 E-value=3.2e+02 Score=23.50 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=42.5
Q ss_pred cHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhh-HHHHHHHHHH
Q 040681 388 GLLCLAKLVE-KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTL-QIPAIKSIGS 465 (594)
Q Consensus 388 ~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v-~~~a~~aL~~ 465 (594)
.+|.+.+.|. +..++.+..+-+.+..|+.-+.=++ .+++.+++-+-.+..... +..++.+|..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~---------------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~ 71 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD---------------EVLNALMESILKNWTQETVQRQALICLIV 71 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH---------------HHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4788888888 6678999999999988874433232 233444433332222222 4678888888
Q ss_pred hhcCC
Q 040681 466 LARTF 470 (594)
Q Consensus 466 La~~~ 470 (594)
++...
T Consensus 72 l~q~q 76 (121)
T PF12397_consen 72 LCQSQ 76 (121)
T ss_pred HHHcc
Confidence 88543
No 281
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.22 E-value=1.3e+02 Score=25.94 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=33.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
-+|+.|+.-|.+++++|...|..+|.+.|..+ .+.+.+..
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 36899999999999999999999999999865 66666654
No 282
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.15 E-value=99 Score=33.82 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHhhCChhHHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 210 TASSEAQSAAATALYNIANDQERVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 210 ~~~~~v~e~A~~aL~~La~~~~~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+.+++++++|..++++++-+.++|...+ +......+++++-.+.+++-+.++.++..+-.
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3349999999999999999877766544 55667788899999988998999988888865
No 283
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=27.81 E-value=2.9e+02 Score=21.71 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=34.3
Q ss_pred hhhHHHHHH-------HHHhHHHHHHHHHHHhhhcCCCCcccchhH-HHHHHHHHHHHHHHHH
Q 040681 32 ESFKAECAE-------VGKQVDRLSQMLRTVVRFTTPAQSLYERPI-RRVVSEVSKNLERSLT 86 (594)
Q Consensus 32 ~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~-~~~~~~~~~~l~~~~~ 86 (594)
++|..||-. ++.+++..-..|.++ +|++-. -|++.-+.+.-+++..
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a---------LYq~DAA~RViArl~kErd~ar~ 64 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLDQTRQELSHA---------LYQHDAACRVIARLLKERDEARE 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHhHHHHHH
Confidence 457778875 566666666666654 899995 8999999888777665
No 284
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.49 E-value=1.2e+02 Score=26.20 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=33.1
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHh
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVS 238 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~ 238 (594)
+|+.|++-|.+++ +++...|..+|...+.++++-+.++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 5788999999988 89999999999999987766666655
No 285
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.55 E-value=4.5e+02 Score=28.98 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=54.5
Q ss_pred hhhHHHHHhhCcHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcC-----------CHHHHHHhhhcCChhhHHHHHHHH
Q 040681 377 VANSRRISETKGLLCLAKLVE-KEQGELQFNCLMTIMEITAAAES-----------NADLRRAAFKTNSPAAKAVVDQLL 444 (594)
Q Consensus 377 ~~~~~~i~e~g~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~-----------~~~~r~~~~~~~~~~~~~~v~~Ll 444 (594)
.++.+.+.+.+.|+.|+.+|. +.+.+++.+|+..|..|...+.+ |+-+|+ +. .+..|..|+
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~--L~-----S~~~v~~Ll 124 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ--LV-----SEETVEKLL 124 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH--Hh-----ChHHHHHHH
Confidence 355667778999999999996 44578999999999988766532 222222 12 345677777
Q ss_pred HHHhcCCChhhHHHHHHHHHHhhc
Q 040681 445 RVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 445 ~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
..+-..........++.++-.|-+
T Consensus 125 ~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 125 DIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHH
Confidence 666532224455556655555554
No 286
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.35 E-value=4e+02 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 040681 213 SEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMA 268 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La 268 (594)
+..+..++..|+.+.. .+.....|++...++.|+++|..+ +..+...|.-+|..|-
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 6778899999999987 677789999999999999999866 7777777777776664
No 287
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=23.46 E-value=5.5e+02 Score=24.68 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=48.1
Q ss_pred hHhhhHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHH
Q 040681 5 IEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRVVSEVSKNLERS 84 (594)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~ 84 (594)
-|++.|+.+.......+..- +..||.+|+.|+.-...|+..+. .++.-+..+-.+.+..++.+++..
T Consensus 15 ~md~svk~l~~~~~~~~kk~------~~~~kkeyqk~G~af~~L~~af~-------~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 15 SMDDSVKNLINIAQEQAKKH------QGPYKKEYQKIGQAFTSLGTAFE-------LDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHc-------cCCCccchHHHHHHHHHHHHHHHH
Confidence 46777777666655554432 46799999999888877776633 112223334588888888888887
Q ss_pred HHHHHh
Q 040681 85 LTLVRK 90 (594)
Q Consensus 85 ~~l~~~ 90 (594)
..|...
T Consensus 82 g~l~~e 87 (199)
T cd07626 82 GELFAE 87 (199)
T ss_pred HHHHHH
Confidence 765543
No 288
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=23.26 E-value=1e+02 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
+.+++.|+++|+.+.++.++..++++||.|-.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA 40 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 45889999999999889999999999999875
No 289
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.22 E-value=4.9e+02 Score=29.89 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=79.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh-ccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL-KETASSEAQSAAATALYNIANDQERVRVIVSELGV 242 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i 242 (594)
.+...+...+..++..+..++.-=| -..+..-.+|.|-++. +..+ ..++.+++.++..+... -.+..+++ -+
T Consensus 397 S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~-~~vkvn~L~c~~~l~q~-lD~~~v~d--~~ 469 (700)
T KOG2137|consen 397 SLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTN-LYVKVNVLPCLAGLIQR-LDKAAVLD--EL 469 (700)
T ss_pred HhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccc-hHHHHHHHHHHHHHHHH-HHHHHhHH--HH
Confidence 3455566677777777776664322 3344555677776653 3444 88999999999988831 12334433 36
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 243 PTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 243 ~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
.++.+..+..++++.-....+..++....+.. ..+..+.++|.++-+.-.+
T Consensus 470 lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 470 LPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 66777777779999988888888888765432 3444456777777765444
No 290
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=22.15 E-value=5.1e+02 Score=27.85 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc--------------cCCCHHHHHHHHHHHHHhc
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL--------------SHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL--------------~~~~~~v~~~Aa~aL~nl~ 504 (594)
.-+.+.++|..+.....+..++.+++-|+|.....+.-...++++.| ...+.+|..||...|+|++
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 45667777776665667778889999999765544433333333222 1235588999999999998
Q ss_pred CCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 505 SPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
. . ++..+....+......+++.+.
T Consensus 126 f-~---Sq~~q~~~~~~~~~~~ll~~v~ 149 (532)
T KOG4464|consen 126 F-H---SQRAQDLFLENPLTGKLLQRVL 149 (532)
T ss_pred h-c---cHHHHHHHHhhhhHHHHHHHHH
Confidence 7 2 3566677788888888877765
No 291
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.11 E-value=69 Score=29.21 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 457 IPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..|+..||.+-+. .-+.+|+.+|.+++.++..+|+.+|.+..-
T Consensus 81 ~~Av~LLGtM~GG------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 81 AEAVELLGTMLGG------YNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHTTS-SS------TTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHhhccCC------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 3455555554321 138999999999999999999999998654
No 292
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.57 E-value=4.6e+02 Score=23.54 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHhhCCh--hHHHHHHhcCCHHH-HHHhhcC---CCHHHHHHHHHHHHHHhh
Q 040681 202 PLLKLLKETASSEAQSAAATALYNIANDQ--ERVRVIVSELGVPT-IVNVLSD---SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 202 ~Lv~LL~~~~~~~v~e~A~~aL~~La~~~--~~~~~iv~~g~i~~-Lv~lL~~---~~~~v~~~aa~aL~~La~ 269 (594)
.|.+-|..+.++.++..|+..|-.+..+. .....|...+.+.. |++++.. .+.+|+..+...+...+.
T Consensus 42 alkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 42 ALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 33343443322788888888888777632 34667777788886 9999863 256899999999888864
No 293
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=21.52 E-value=1.1e+03 Score=25.89 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHhhcCChhhhh-----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 453 PTLQIPAIKSIGSLARTFPARET-----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~~-----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
...-..+++.+..+...-..-+. .++|.+++.-++.+..||+.|+..|-.+..
T Consensus 420 ~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 420 EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 45555677777777754443221 678999999999999999999999887743
No 294
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.94 E-value=8.4e+02 Score=24.33 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHhcCC-ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc----cCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 441 DQLLRVINDLD-SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL----SHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 441 ~~Ll~lL~s~~-~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
+.|.+++.+.+ +.-++..|+++|..++..++.....++.-+-.++ ......+-..=+..++.+-..+- ....
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL---~~~I 190 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEEL---LPEI 190 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHh---HHHH
Confidence 44455555443 2568899999999999888765555554444444 33333333333334444422111 1334
Q ss_pred HHHHHcCChHH
Q 040681 516 KAIIEFNAVPP 526 (594)
Q Consensus 516 ~~i~~~g~i~~ 526 (594)
+.+.+.|.|++
T Consensus 191 ~~~f~~~lVd~ 201 (249)
T PF06685_consen 191 RKAFEDGLVDP 201 (249)
T ss_pred HHHHHcCCCCc
Confidence 55566677655
No 295
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.92 E-value=5.8e+02 Score=22.44 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=35.2
Q ss_pred HHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 369 LWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 369 L~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
|.+++..++..+.. ++..|.+-|++.++.|+..|+..|..++.- +++++++
T Consensus 25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~--G~~~f~~ 75 (122)
T cd03572 25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK--GNSDFKR 75 (122)
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhh--CCHHHHH
Confidence 44554444443443 466788888888899999999999998833 3566666
No 296
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.64 E-value=5.9e+02 Score=22.40 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=43.0
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHHHHHh-cCCHHHHHHhhcC-----C---CHHHHHHHHHHHHHHh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAN--DQERVRVIVS-ELGVPTIVNVLSD-----S---IMKVQIQVASLVARMA 268 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~~iv~-~g~i~~Lv~lL~~-----~---~~~v~~~aa~aL~~La 268 (594)
...|.+-|+..+ +.|+..++++|-.|+. .++.+..+.+ .-.|..+..+=.. | ...||..|-.++.-|.
T Consensus 40 ~d~L~kRL~~~~-~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRSS-PHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCCC-CcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 345666677666 8898999999999886 3444555543 3344444443331 1 4568888877777665
Q ss_pred h
Q 040681 269 E 269 (594)
Q Consensus 269 ~ 269 (594)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 297
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.53 E-value=7.1e+02 Score=23.34 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
++...++...+.+...+..|+..|..+.+..=.+-. ..||.|+.|..+++ +.++..|...+..+.. +++-...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666678889999999988877664222211 35889999999988 9999999999999976 4443322
Q ss_pred HHhcCCHHHHHHh---hcCC-CHHH---HHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 236 IVSELGVPTIVNV---LSDS-IMKV---QIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 236 iv~~g~i~~Lv~l---L~~~-~~~v---~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
=...| +..-..+ +..+ .... ......-|+.+...+...|..| +..|++.+...
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~ 142 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFD 142 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhh
Confidence 22233 2222221 1111 1111 4445555666665444555555 45566655443
No 298
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.48 E-value=7.4e+02 Score=23.49 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
+.+-++.-|+..+...+.-|...+..+.......+-.=+=...|+||.+-|.+.+ +++...++.+|..|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRD-PEVFCATLKALQQLVT 109 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 3444566666666677777877777776542222222222456778888888888 9999999999999965
Done!