Query 040681
Match_columns 594
No_of_seqs 374 out of 1974
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 4.4E-38 1.5E-42 346.4 34.7 404 146-584 46-479 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.5E-36 5.3E-41 335.6 36.4 393 157-584 77-498 (529)
3 1xm9_A Plakophilin 1; armadill 100.0 1E-33 3.4E-38 307.3 29.4 362 158-584 4-450 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 5.4E-33 1.9E-37 305.4 29.8 361 157-542 49-468 (584)
5 3nmz_A APC variant protein; pr 100.0 6.3E-33 2.1E-37 298.4 27.3 310 158-542 72-442 (458)
6 4b8j_A Importin subunit alpha- 100.0 4.9E-31 1.7E-35 291.0 40.1 392 157-584 75-497 (528)
7 3now_A UNC-45 protein, SD10334 100.0 2.3E-31 7.8E-36 301.7 31.9 299 157-534 422-762 (810)
8 3now_A UNC-45 protein, SD10334 100.0 2.1E-31 7.1E-36 302.0 28.5 350 153-582 374-784 (810)
9 1wa5_B Importin alpha subunit; 100.0 2.7E-29 9.4E-34 277.3 38.6 392 157-584 88-511 (530)
10 1xm9_A Plakophilin 1; armadill 100.0 8.6E-31 2.9E-35 284.2 25.9 351 157-542 45-441 (457)
11 3nmw_A APC variant protein; AR 100.0 5.9E-30 2E-34 267.3 28.4 266 172-508 48-336 (354)
12 3ul1_B Importin subunit alpha- 100.0 4.9E-29 1.7E-33 274.2 33.3 348 157-542 101-470 (510)
13 3tpo_A Importin subunit alpha- 100.0 1.5E-28 5E-33 271.7 36.4 348 157-542 120-489 (529)
14 3nmz_A APC variant protein; pr 100.0 4.9E-29 1.7E-33 268.1 30.4 354 156-581 32-451 (458)
15 2jdq_A Importin alpha-1 subuni 100.0 2.1E-28 7.2E-33 263.2 34.8 350 157-584 65-444 (450)
16 3l6x_A Catenin delta-1; cateni 100.0 3.9E-29 1.3E-33 274.8 29.0 332 157-523 91-489 (584)
17 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-28 4.9E-33 270.3 30.7 365 157-542 60-481 (529)
18 3nmw_A APC variant protein; AR 100.0 5.6E-28 1.9E-32 252.4 26.8 255 213-542 46-326 (354)
19 2jdq_A Importin alpha-1 subuni 100.0 1.4E-26 4.8E-31 249.0 35.7 307 158-542 22-339 (450)
20 2z6h_A Catenin beta-1, beta-ca 100.0 1.8E-26 6.3E-31 260.8 34.2 360 157-542 57-478 (644)
21 1jdh_A Beta-catenin; beta-cate 100.0 1.8E-26 6.2E-31 253.6 30.3 307 157-542 18-331 (529)
22 4b8j_A Importin subunit alpha- 99.9 1.1E-25 3.8E-30 248.1 34.1 313 157-542 161-488 (528)
23 2z6g_A B-catenin; FULL-length, 99.9 7.3E-26 2.5E-30 261.0 32.4 362 157-542 193-614 (780)
24 1wa5_B Importin alpha subunit; 99.9 1.8E-25 6.3E-30 246.6 34.1 311 158-542 175-502 (530)
25 2z6h_A Catenin beta-1, beta-ca 99.9 1.5E-25 5E-30 253.4 33.8 307 157-542 15-328 (644)
26 4hxt_A De novo protein OR329; 99.9 5.6E-25 1.9E-29 217.3 28.3 240 157-470 3-243 (252)
27 4db8_A Armadillo-repeat protei 99.9 2.8E-25 9.7E-30 220.4 24.8 237 158-505 14-251 (252)
28 2z6g_A B-catenin; FULL-length, 99.9 3.1E-24 1.1E-28 247.3 33.7 307 157-542 151-464 (780)
29 4hxt_A De novo protein OR329; 99.9 4.8E-24 1.6E-28 210.6 27.5 234 198-505 2-241 (252)
30 3tt9_A Plakophilin-2; cell adh 99.9 3E-24 1E-28 209.9 16.5 206 157-415 9-228 (233)
31 4db6_A Armadillo repeat protei 99.9 1.4E-22 4.8E-27 195.3 23.6 193 159-415 15-208 (210)
32 4db8_A Armadillo-repeat protei 99.9 1.8E-22 6.2E-27 200.1 25.1 230 198-542 12-243 (252)
33 3tt9_A Plakophilin-2; cell adh 99.9 2.3E-22 7.7E-27 196.7 19.4 197 199-468 9-229 (233)
34 1xqr_A HSPBP1 protein; armadil 99.9 1.1E-21 3.8E-26 199.6 25.2 194 157-415 29-237 (296)
35 4db6_A Armadillo repeat protei 99.9 3E-21 1E-25 186.0 25.1 199 196-468 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 8.5E-22 2.9E-26 200.4 19.9 233 213-584 54-288 (296)
37 3opb_A SWI5-dependent HO expre 99.9 8E-21 2.7E-25 211.8 24.8 292 157-505 377-728 (778)
38 3opb_A SWI5-dependent HO expre 99.9 1.5E-20 5.1E-25 209.6 25.4 315 153-542 331-720 (778)
39 3grl_A General vesicular trans 99.6 9.7E-13 3.3E-17 143.4 30.5 307 156-542 21-386 (651)
40 1oyz_A Hypothetical protein YI 99.6 9.4E-13 3.2E-17 132.3 25.3 239 158-534 25-264 (280)
41 3grl_A General vesicular trans 99.6 4.5E-12 1.5E-16 138.2 32.2 292 157-508 123-451 (651)
42 1oyz_A Hypothetical protein YI 99.5 1.7E-12 5.6E-17 130.5 19.9 231 195-554 20-258 (280)
43 1b3u_A Protein (protein phosph 99.4 1.1E-10 3.8E-15 128.9 26.0 322 162-579 248-586 (588)
44 3ltm_A Alpha-REP4; protein eng 99.3 4.9E-11 1.7E-15 114.5 18.8 186 197-505 18-203 (211)
45 3ltj_A Alpharep-4; protein eng 99.3 6.4E-11 2.2E-15 112.7 18.8 185 197-504 13-197 (201)
46 1b3u_A Protein (protein phosph 99.3 4.4E-10 1.5E-14 124.1 26.2 195 361-581 340-549 (588)
47 3ltm_A Alpha-REP4; protein eng 99.3 3E-10 1E-14 108.8 20.3 186 157-470 20-205 (211)
48 3ltj_A Alpharep-4; protein eng 99.3 8.6E-10 2.9E-14 104.8 22.6 183 157-467 15-197 (201)
49 4fdd_A Transportin-1; heat rep 99.2 3.9E-10 1.3E-14 131.1 22.8 302 157-542 129-463 (852)
50 2vgl_B AP-2 complex subunit be 99.2 1E-09 3.5E-14 122.4 23.4 302 157-542 122-449 (591)
51 4gmo_A Putative uncharacterize 99.2 1.8E-10 6.2E-15 130.5 14.9 196 158-415 36-257 (684)
52 4gmo_A Putative uncharacterize 99.2 1.1E-09 3.8E-14 124.1 20.7 217 197-467 33-257 (684)
53 4fdd_A Transportin-1; heat rep 99.1 2.8E-09 9.6E-14 123.9 22.4 298 161-542 95-421 (852)
54 1w63_A Adapter-related protein 99.1 9E-09 3.1E-13 115.3 23.7 287 157-542 108-406 (618)
55 2vgl_B AP-2 complex subunit be 99.1 2E-09 6.9E-14 119.9 17.3 285 161-542 91-411 (591)
56 1w63_A Adapter-related protein 99.0 4.6E-08 1.6E-12 109.5 27.0 314 158-580 72-414 (618)
57 1ibr_B P95, importin beta-1 su 99.0 6.9E-09 2.4E-13 110.8 18.5 271 156-505 128-437 (462)
58 1ibr_B P95, importin beta-1 su 98.9 3.7E-08 1.3E-12 105.2 19.1 330 161-577 95-459 (462)
59 2bpt_A Importin beta-1 subunit 98.7 1E-06 3.4E-11 101.8 23.5 297 161-542 374-703 (861)
60 1qgr_A Protein (importin beta 98.6 3.3E-06 1.1E-10 97.6 23.2 268 157-505 129-437 (876)
61 2bpt_A Importin beta-1 subunit 98.5 9E-05 3.1E-09 85.4 32.8 305 161-542 100-432 (861)
62 1qgr_A Protein (importin beta 98.5 5.5E-06 1.9E-10 95.8 22.3 272 160-505 176-479 (876)
63 2vgl_A Adaptor protein complex 98.5 4.3E-05 1.5E-09 85.3 27.4 281 160-542 78-390 (621)
64 2vgl_A Adaptor protein complex 98.4 3.3E-05 1.1E-09 86.3 25.4 262 158-505 113-398 (621)
65 1u6g_C TIP120 protein, CAND1; 98.4 2.9E-06 9.9E-11 102.4 17.2 265 157-505 7-284 (1230)
66 4ady_A RPN2, 26S proteasome re 98.3 1.4E-05 4.8E-10 91.3 19.7 253 167-542 406-668 (963)
67 2db0_A 253AA long hypothetical 98.3 0.0001 3.4E-09 67.3 21.0 193 235-518 27-219 (253)
68 2db0_A 253AA long hypothetical 98.2 0.00021 7.2E-09 65.2 19.0 215 196-505 30-246 (253)
69 1u6g_C TIP120 protein, CAND1; 98.1 7.7E-05 2.6E-09 89.9 19.0 295 157-542 49-395 (1230)
70 4ady_A RPN2, 26S proteasome re 98.0 0.00025 8.5E-09 81.2 20.7 278 153-505 429-719 (963)
71 3tjz_B Coatomer subunit gamma; 98.0 4.5E-05 1.6E-09 78.6 13.3 246 156-503 104-351 (355)
72 2qk2_A LP04448P; mini spindles 97.9 4.3E-05 1.5E-09 74.5 11.4 181 161-417 20-206 (242)
73 1ho8_A Vacuolar ATP synthase s 97.9 0.00037 1.3E-08 73.6 18.9 261 161-505 172-476 (480)
74 1te4_A Conserved protein MTH18 97.8 1.5E-05 5.1E-10 70.0 5.4 87 158-266 44-130 (131)
75 2qk2_A LP04448P; mini spindles 97.8 0.0002 7E-09 69.6 13.6 126 361-505 73-205 (242)
76 3b2a_A TON_1937, putative unch 97.8 0.0018 6.2E-08 61.6 18.4 213 198-499 33-255 (265)
77 3tjz_B Coatomer subunit gamma; 97.7 0.0018 6.2E-08 66.6 19.9 235 200-542 70-308 (355)
78 1te4_A Conserved protein MTH18 97.7 6.7E-05 2.3E-09 65.8 7.9 88 389-503 44-131 (131)
79 3b2a_A TON_1937, putative unch 97.7 0.0014 4.8E-08 62.3 16.3 182 240-505 33-218 (265)
80 3dad_A FH1/FH2 domain-containi 97.6 0.0029 9.8E-08 63.8 18.8 135 157-292 119-264 (339)
81 2qk1_A Protein STU2; STU2P, XM 97.4 0.00054 1.9E-08 67.2 10.0 186 162-417 22-221 (249)
82 1ho8_A Vacuolar ATP synthase s 97.3 0.013 4.3E-07 62.0 19.9 249 202-542 171-468 (480)
83 2qk1_A Protein STU2; STU2P, XM 97.2 0.0015 5.2E-08 63.9 10.9 132 361-504 77-219 (249)
84 2iw3_A Elongation factor 3A; a 97.1 0.012 4.1E-07 68.1 17.6 256 157-505 15-280 (986)
85 3dad_A FH1/FH2 domain-containi 96.9 0.031 1.1E-06 56.2 16.8 89 203-293 123-213 (339)
86 2iw3_A Elongation factor 3A; a 96.5 0.18 6.3E-06 58.3 21.8 237 174-503 70-322 (986)
87 1lrv_A LRV, leucine-rich repea 95.4 0.0066 2.2E-07 59.1 2.9 63 164-262 58-120 (244)
88 1wa5_C Importin alpha RE-expor 94.8 3.6 0.00012 47.8 24.6 120 402-542 376-517 (960)
89 2x1g_F Cadmus; transport prote 94.0 0.77 2.6E-05 53.4 16.4 92 168-270 476-573 (971)
90 1wa5_C Importin alpha RE-expor 94.0 1.7 5.9E-05 50.5 19.2 250 172-503 377-668 (960)
91 4ffb_C Protein STU2; tubulin f 93.8 3.4 0.00012 40.2 18.3 107 163-270 16-133 (278)
92 2x1g_F Cadmus; transport prote 93.3 2.9 0.0001 48.5 19.7 209 213-505 478-722 (971)
93 2x19_B Importin-13; nuclear tr 92.9 5 0.00017 46.4 20.8 94 167-270 460-557 (963)
94 1upk_A MO25 protein; transfera 92.4 9.8 0.00033 38.1 20.7 203 235-505 73-283 (341)
95 2fv2_A RCD1 required for cell 92.3 8.3 0.00028 37.1 18.1 153 257-474 73-230 (268)
96 2of3_A ZYG-9; multifunctional 91.6 0.8 2.7E-05 44.8 9.9 99 388-503 133-234 (266)
97 2x19_B Importin-13; nuclear tr 91.6 6.2 0.00021 45.6 19.4 209 213-504 463-713 (963)
98 1upk_A MO25 protein; transfera 91.4 13 0.00044 37.3 19.6 203 158-426 80-293 (341)
99 1lsh_A Lipovitellin (LV-1N, LV 91.3 4.5 0.00016 47.5 17.8 115 362-509 457-580 (1056)
100 4ffb_C Protein STU2; tubulin f 91.2 3.8 0.00013 39.8 14.7 102 387-504 102-211 (278)
101 2of3_A ZYG-9; multifunctional 91.2 0.91 3.1E-05 44.3 9.8 106 161-269 51-161 (266)
102 3ibv_A Exportin-T; karyopherin 89.8 15 0.00052 42.7 20.3 99 402-505 458-566 (980)
103 3ebb_A Phospholipase A2-activa 89.0 19 0.00065 35.7 18.0 98 362-469 165-264 (304)
104 4hat_C Exportin-1; heat repeat 87.1 5 0.00017 47.0 13.7 132 362-505 470-618 (1023)
105 1lsh_A Lipovitellin (LV-1N, LV 86.2 46 0.0016 39.0 21.4 105 388-505 392-507 (1056)
106 3oc3_A Helicase MOT1, MOT1; re 84.5 3.9 0.00013 44.0 9.8 103 386-504 298-403 (800)
107 4hat_C Exportin-1; heat repeat 84.1 2.2 7.4E-05 50.1 8.8 106 169-279 466-576 (1023)
108 3ebb_A Phospholipase A2-activa 84.0 16 0.00056 36.2 13.9 98 172-270 118-221 (304)
109 3l9t_A Putative uncharacterize 83.3 21 0.0007 34.0 13.5 131 360-521 86-219 (240)
110 3u0r_A Apoptosis inhibitor 5; 82.2 9.8 0.00033 40.0 11.7 96 165-272 37-132 (507)
111 2fv2_A RCD1 required for cell 81.0 5.5 0.00019 38.3 8.6 99 172-271 72-176 (268)
112 3ibv_A Exportin-T; karyopherin 80.9 20 0.00067 41.8 15.2 110 172-292 459-584 (980)
113 2f31_A Diaphanous protein homo 77.5 11 0.00036 35.9 9.7 110 161-271 5-127 (233)
114 3u0r_A Apoptosis inhibitor 5; 76.8 9.5 0.00032 40.1 9.5 118 360-502 43-160 (507)
115 3eg5_B Protein diaphanous homo 74.1 20 0.00068 36.8 11.3 110 161-271 71-193 (383)
116 3m1i_C Exportin-1; heat repeat 73.3 64 0.0022 37.6 16.9 96 400-505 466-569 (1049)
117 3oc3_A Helicase MOT1, MOT1; re 68.8 7.6 0.00026 41.8 6.6 150 361-542 244-396 (800)
118 3l9t_A Putative uncharacterize 68.5 57 0.0019 30.9 12.0 109 158-280 104-218 (240)
119 2bnx_A Diaphanous protein homo 65.6 1.2E+02 0.0042 30.8 17.5 110 161-271 9-131 (386)
120 3m1i_C Exportin-1; heat repeat 63.5 30 0.001 40.4 11.2 132 362-505 470-618 (1049)
121 1lrv_A LRV, leucine-rich repea 62.8 4.5 0.00015 38.9 3.3 60 203-263 151-217 (244)
122 3c2g_A SYS-1 protein; beta-cat 58.5 1.3E+02 0.0043 30.4 12.6 130 221-414 265-401 (619)
123 3gjx_A Exportin-1; transport, 57.7 1.5E+02 0.0052 34.6 15.6 106 388-505 522-644 (1073)
124 3eg5_B Protein diaphanous homo 57.6 1.1E+02 0.0037 31.1 12.9 123 169-293 133-275 (383)
125 2f31_A Diaphanous protein homo 55.2 55 0.0019 30.8 9.6 122 170-293 68-209 (233)
126 1x5b_A Signal transducing adap 49.8 36 0.0012 30.2 6.8 73 156-228 52-125 (163)
127 3o2t_A Symplekin; heat repeat, 48.1 2.4E+02 0.0081 28.7 23.0 103 155-267 24-127 (386)
128 3ldz_A STAM-1, signal transduc 46.6 25 0.00085 30.4 5.1 67 202-269 46-114 (140)
129 2bnx_A Diaphanous protein homo 46.3 1.1E+02 0.0039 31.0 10.9 122 170-293 72-213 (386)
130 3ldz_A STAM-1, signal transduc 44.1 43 0.0015 28.9 6.2 72 156-228 42-114 (140)
131 1mhq_A ADP-ribosylation factor 43.9 50 0.0017 28.8 6.7 72 157-228 39-116 (148)
132 3gs3_A Symplekin, LD45768P; he 42.5 93 0.0032 29.8 8.9 66 437-503 52-117 (257)
133 1mhq_A ADP-ribosylation factor 40.9 49 0.0017 28.8 6.1 68 201-269 41-116 (148)
134 3g2s_A C-terminal fragment of 40.2 47 0.0016 29.0 5.9 69 200-269 50-126 (149)
135 1x5b_A Signal transducing adap 40.0 46 0.0016 29.5 5.9 69 200-269 54-125 (163)
136 1dvp_A HRS, hepatocyte growth 39.3 57 0.0019 30.4 6.8 72 156-227 42-114 (220)
137 3zyq_A Hepatocyte growth facto 38.8 34 0.0012 32.1 5.1 69 200-269 47-118 (226)
138 3zyq_A Hepatocyte growth facto 37.3 53 0.0018 30.8 6.2 73 156-228 45-118 (226)
139 1juq_A ADP-ribosylation factor 37.2 57 0.0019 29.2 6.1 73 156-228 50-128 (171)
140 3gjx_A Exportin-1; transport, 36.0 5.8E+02 0.02 29.7 19.0 67 437-505 205-275 (1073)
141 3ut4_A CTHE_2751, putative unc 34.6 1E+02 0.0035 26.3 6.9 92 475-583 30-130 (134)
142 3qml_C Protein SLS1, nucleotid 33.7 2.2E+02 0.0076 28.0 10.0 101 164-268 78-188 (315)
143 3g2s_A C-terminal fragment of 33.2 1E+02 0.0034 26.9 6.8 72 156-228 48-126 (149)
144 1juq_A ADP-ribosylation factor 31.7 61 0.0021 29.0 5.3 70 200-270 52-129 (171)
145 3o2t_A Symplekin; heat repeat, 29.9 1.4E+02 0.0049 30.4 8.3 65 438-503 63-127 (386)
146 1dvp_A HRS, hepatocyte growth 28.6 51 0.0017 30.7 4.4 69 200-269 44-115 (220)
147 3qml_C Protein SLS1, nucleotid 28.3 4.3E+02 0.015 25.9 14.7 74 213-289 42-117 (315)
148 3c2g_A SYS-1 protein; beta-cat 27.5 4.9E+02 0.017 26.2 13.4 114 178-295 265-380 (619)
149 3gs3_A Symplekin, LD45768P; he 27.0 4.1E+02 0.014 25.2 13.8 102 155-267 14-117 (257)
150 3gwk_C SAG1039, putative uncha 25.5 1.6E+02 0.0056 22.8 6.5 50 9-58 26-77 (98)
151 1elk_A Target of MYB1; superhe 22.6 1.7E+02 0.0058 25.5 6.5 73 156-228 53-130 (157)
152 2vs0_A Virulence factor ESXA; 21.1 2.2E+02 0.0077 21.7 6.5 49 10-58 25-75 (97)
153 1lq7_A Alpha3W; three helix bu 21.1 75 0.0026 22.2 2.9 21 30-50 26-46 (67)
154 3zbh_A ESXA; unknown function, 20.8 2.4E+02 0.008 21.7 6.6 50 9-58 27-78 (99)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.4e-38 Score=346.35 Aligned_cols=404 Identities=18% Similarity=0.214 Sum_probs=310.8
Q ss_pred CCcccCCcchH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHH
Q 040681 146 PPIASNDPMLS-WVWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATAL 223 (594)
Q Consensus 146 ~~ia~~~~i~~-~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL 223 (594)
+.+.++.+... .|.++|..++++|++.+.+|+..++.+.. +...-...|++.|+||+||++|+.++++++|.+|+|+|
T Consensus 46 ~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL 125 (510)
T 3ul1_B 46 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125 (510)
T ss_dssp -------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 33444433322 38889999999999999999999998653 33344588999999999999998765599999999999
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccC
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRA 302 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 302 (594)
+||+. +++++..+++.|++|.|+++|+++++++++.|+|+|+||+.+++.++..+.+.|++++|+.+|.........
T Consensus 126 ~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~-- 203 (510)
T 3ul1_B 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA-- 203 (510)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC--
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh--
Confidence 99986 778899999999999999999999999999999999999998899999999999999999999876321110
Q ss_pred ccchhhHHH--HHHHhhhhccccc----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC
Q 040681 303 NSGKQSIHT--IVQINKEMEKNSF----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS 376 (594)
Q Consensus 303 v~~~~si~~--l~l~~~~~~~~~~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~ 376 (594)
...++. ..+.|+....... ...++++.|+.++. .+++ .++..++++|++|+.++
T Consensus 204 ---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-------------~~~~----~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 204 ---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-------------HNDP----EVLADSCWAISYLTDGP 263 (510)
T ss_dssp ---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-------------CSCH----HHHHHHHHHHHHHTSSC
T ss_pred ---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-------------cCCH----HHHHHHHHHHHHHhhch
Confidence 001111 1333433322111 12344444443331 1232 46788999999999877
Q ss_pred hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhH
Q 040681 377 VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ 456 (594)
Q Consensus 377 ~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~ 456 (594)
++..+.+.+.|+++.|+.+|.+++..++..++++|.||+ .+++..+.. +. +. ++++.|+.+|.+.+ +.++
T Consensus 264 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~---~~~~~~~~~-i~-~~----g~l~~L~~LL~~~~-~~v~ 333 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQK-VI-DA----GALAVFPSLLTNPK-TNIQ 333 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-HT----TGGGGCC-CTTCSS-HHHH
T ss_pred hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh---cCCHHHHHH-Hh-hc----cchHHHHHHhcCCC-HHHH
Confidence 887888899999999999999999999999999999997 556655553 33 22 37788888888665 8999
Q ss_pred HHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhc
Q 040681 457 IPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLL 531 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL 531 (594)
..|+++|+||+...+.. +.|++++|+.+|.+++.+++++|+|+|+|++..++ .++...+++.|++++|+++|
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~---~~~~~~L~~~g~i~~L~~LL 410 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLL 410 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC---HHHHHHHHHCCCHHHHHHHh
Confidence 99999999999755432 23899999999999999999999999999988555 58888999999999999999
Q ss_pred cCCch-HhHhHH----HHHH--------HHHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 532 RGNDR-TQLHGL----ALEQ--------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 532 ~~~~~-vq~~Al----~l~~--------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+.|+ ++..++ .+.+ ..+...++ +.+....+|+++..+++.+|..+|+.||+.
T Consensus 411 ~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99888 766655 1211 11222233 566667789999999999999999999983
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.5e-36 Score=335.57 Aligned_cols=393 Identities=18% Similarity=0.209 Sum_probs=309.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhh-ccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la-~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+.+++..++++|++.+..|+..++.+. .++......|++.|+||+|+++|+.++++.+|.+|+|+|+||+. +++.+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4667889999999999999999998764 44445568889999999999999876659999999999999997 567789
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH--H
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT--I 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~--l 312 (594)
.+++.|++|+|+.+|.+++.++++.|+|+|+||+.+++.++..+.+.|++++|+.+|......... ...++. .
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~-----~~~~~~a~~ 231 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA-----CGYLRNLTW 231 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC-----HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH-----HHHHHHHHH
Confidence 999999999999999999999999999999999998999999999999999999999876321110 001111 1
Q ss_pred HHHhhhhccccc----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCc
Q 040681 313 VQINKEMEKNSF----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKG 388 (594)
Q Consensus 313 ~l~~~~~~~~~~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~ 388 (594)
++.++..+.... ...++++.|+.+++ ..++ .++..++++|++++.++++..+.+++.|+
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-------------~~~~----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~ 294 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLH-------------HNDP----EVLADSCWAISYLTDGPNERIEMVVKKGV 294 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTT-------------SSCH----HHHHHHHHHHHHHHSSCHHHHHHHHTTTC
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhc-------------CCcH----HHHHHHHHHHHHhhhhhhhhHHHHHhccc
Confidence 233333222111 12344554443331 1333 45778999999999888888888999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++.|+.+|.+++..++..++++|.||+ .+++..+.. +. .. ++++.|+.+|.+.+ +.++..|+++|+||+.
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~---~~~~~~~~~-i~-~~----g~l~~L~~LL~~~~-~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQK-VI-DA----GALAVFPSLLTNPK-TNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-HT----TGGGGHHHHTTCSS-HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHH---ccchHHHHH-Hh-hc----ccHHHHHHHHcCCC-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999997 566666663 33 22 37888999998665 9999999999999997
Q ss_pred CChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 469 TFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 469 ~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
..+.. +.|++++|+.+|.+++.+++++|+|+|+|++..++ .++...+++.|+|++|+++|.+.|+ ++..++
T Consensus 365 ~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~---~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L 441 (529)
T 3tpo_A 365 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441 (529)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence 65432 34899999999999999999999999999987555 5888999999999999999999888 666555
Q ss_pred ----HHHH--------HHHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 ----ALEQ--------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 ----~l~~--------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+.+ ..+...++ +.+....+|+++..+++.+|..+|+.||+.
T Consensus 442 ~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 442 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 1211 11222233 666667789999999999999999999983
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1e-33 Score=307.31 Aligned_cols=362 Identities=13% Similarity=0.130 Sum_probs=275.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~~i 236 (594)
+..++..|++++++.+..|+++|++++.+++.++..|++.|+||+|+++|++++ +++++.|+++|+||+.+ ++++..|
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 566889999999999999999999999988888989999999999999999988 99999999999999985 8999999
Q ss_pred HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCc-CCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETF-VDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~v~~~~si~~l~l 314 (594)
++.|++|+|+++|+ ++++++++.++|+|+||+.+ +.++..+.+ |++++|+.+|..+.. ...+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~-------------- 146 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDG-------------- 146 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----------------
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccC--------------
Confidence 99999999999999 78999999999999999997 579998988 999999999943100 0000
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhh-CcHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET-KGLLCLA 393 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~-g~l~~L~ 393 (594)
...+.++..++ .+...|+++|+||+.+ +++++.+.+. |+++.|+
T Consensus 147 ------------------------------~~~~~~e~~~~----~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv 191 (457)
T 1xm9_A 147 ------------------------------NSNMSREVVDP----EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLM 191 (457)
T ss_dssp -------------------------------------CCCH----HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHH
T ss_pred ------------------------------ccchhcccccH----HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHH
Confidence 00011222232 4577899999999865 8889999997 9999999
Q ss_pred HHhhh------CCHHHHHHHHHHHHHHHHHhc---CCHH---------------HHHHhhhc------------------
Q 040681 394 KLVEK------EQGELQFNCLMTIMEITAAAE---SNAD---------------LRRAAFKT------------------ 431 (594)
Q Consensus 394 ~LL~~------~~~~v~~~A~~aL~nL~~~~~---~~~~---------------~r~~~~~~------------------ 431 (594)
.+|.+ .+..++.+|+++|.||+...+ .... ... .|..
T Consensus 192 ~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (457)
T 1xm9_A 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG-CFSNKSDKMMNNNYDCPLPEEE 270 (457)
T ss_dssp HHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------------------------CCCCC
T ss_pred HHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc-hhhccchhhhhccccCCccccc
Confidence 99986 345678899999999861100 0000 000 0000
Q ss_pred --CCh----hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----------hhhccHHHHHHhccCCCHHHHHH
Q 040681 432 --NSP----AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----------RETRVIGPLVAHLSHRNQEVATE 495 (594)
Q Consensus 432 --~~~----~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----------~~~~~i~~Lv~lL~~~~~~v~~~ 495 (594)
..+ ...++++.|+.+|.+..++.+++.|+++|+||+..... .+.+++|.|+++|.+++.+++++
T Consensus 271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~ 350 (457)
T 1xm9_A 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350 (457)
T ss_dssp SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHH
T ss_pred cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHH
Confidence 000 12457889999999887799999999999999964321 12489999999999999999999
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-------HhHhHH---------------HHHHHHHHHHH
Q 040681 496 AAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-------TQLHGL---------------ALEQARVLTAL 553 (594)
Q Consensus 496 Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-------vq~~Al---------------~l~~~~~l~~L 553 (594)
|+|+|+|++. + ...+.++..|++++|+++|..+++ ++..++ .+.+.+++..|
T Consensus 351 A~~aL~nls~-----~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 351 GASLLSNMSR-----H-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp HHHHHHHHHT-----S-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhc-----C-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 9999999987 2 234456667899999999997632 343443 12223444444
Q ss_pred hhhccccccccch-HHHHHHHHHHhccccccc
Q 040681 554 EGADRTVVAQHPE-LKELVSEALYHLNLYHAG 584 (594)
Q Consensus 554 e~~~~~~~~q~~~-~~~l~~~a~~~l~~~~~~ 584 (594)
. .++.+. ..+++.+|...|+.||..
T Consensus 425 ~------~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 425 I------NLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp H------HHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred H------HHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 3 222233 568999999999988863
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.4e-33 Score=305.39 Aligned_cols=361 Identities=16% Similarity=0.159 Sum_probs=272.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN--DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~ 234 (594)
.|..+|..|++++++.+..|+++|.+++.+++.++..|++.|+||+||++|++++ +++|++|+++|+||+. ++++|.
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHH
Confidence 3677899999999999999999999999988999999999999999999999998 9999999999999997 488999
Q ss_pred HHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc---CCcCC-----CccCccc
Q 040681 235 VIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF---ETFVD-----DPRANSG 305 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~-----~~~~v~~ 305 (594)
.|++.|+||+|+++|++ ++.+++++++++|++|+. ++.++..|.+ +++++|+.++.. +.... ..+....
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999997 488999999999999998 4578888885 579999998732 11000 0000000
Q ss_pred hhhHH--HHHHHhhhhcccc-c----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-
Q 040681 306 KQSIH--TIVQINKEMEKNS-F----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV- 377 (594)
Q Consensus 306 ~~si~--~l~l~~~~~~~~~-~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~- 377 (594)
..... .-++.|++..+.. + ...|.+++|+.++...... ...+ ...+.+|+++|+||+....
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~------~~~~-----~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ------KDSD-----SKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT------TCCS-----CHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc------cCcc-----HHHHHHHHHHHHHhhccccc
Confidence 00011 1266777754322 2 3567788888765321000 0011 1467889999999985411
Q ss_pred h------------------------hHHHHHhhCcHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHhhhc
Q 040681 378 A------------------------NSRRISETKGLLCLAKLVE-KEQGELQFNCLMTIMEITAAAES-NADLRRAAFKT 431 (594)
Q Consensus 378 ~------------------------~~~~i~e~g~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~-~~~~r~~~~~~ 431 (594)
+ -...+.+.++++.|+.+|. +.++.++++|+++|.|||+.... ...++. .+.
T Consensus 275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~-~v~- 352 (584)
T 3l6x_A 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS-ALR- 352 (584)
T ss_dssp HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH-HHT-
T ss_pred cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH-HHH-
Confidence 0 1122334567889999996 45789999999999999832211 123444 222
Q ss_pred CChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh---hccHHHHHHhccCC--------CHHHHHHHHHHH
Q 040681 432 NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE---TRVIGPLVAHLSHR--------NQEVATEAAIAL 500 (594)
Q Consensus 432 ~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~---~~~i~~Lv~lL~~~--------~~~v~~~Aa~aL 500 (594)
. .++++.|+++|.+.+ ..+++.|+++|+||+....... .+++|+||++|.++ +.++...|+++|
T Consensus 353 ~----~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 353 Q----EKALSAIADLLTNEH-ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp S----HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred H----cCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 2 347999999998776 8999999999999998665433 38999999999765 578999999999
Q ss_pred HHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--ch-HhHhHH
Q 040681 501 QKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--DR-TQLHGL 542 (594)
Q Consensus 501 ~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~-vq~~Al 542 (594)
.|++. ++ .++.+.|++.|||++|+++|+++ .+ +++.|.
T Consensus 428 ~NL~a-~~---~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 428 NEVIA-EN---LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHT-TC---HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHhc-CC---HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 99987 44 58999999999999999999976 44 666554
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=298.36 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=254.9
Q ss_pred HHHHHHHHhc------------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCh----------HHHHHhhccCC-CHH
Q 040681 158 VWSYIAAIQM------------GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGV----------PPLLKLLKETA-SSE 214 (594)
Q Consensus 158 i~~lv~~L~~------------~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I----------~~Lv~LL~~~~-~~~ 214 (594)
++-+|++|+. ++++.+.+|+|+|.|++.++++.....++.|.+ +.+++++.+.. +.+
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMD 151 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSC
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Confidence 4557888875 457999999999999999999999998898888 67777777642 122
Q ss_pred -----HHH-------HHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcC
Q 040681 215 -----AQS-------AAATALYNIANDQERVRVIVSELGVPTIVNVLSD-----------SIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 215 -----v~e-------~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~-----------~~~~v~~~aa~aL~~La~~~ 271 (594)
+++ +|+|+|+|++.++++|..|++.|++++|+.+|.. .++.++.+|+|+|.|||.++
T Consensus 152 ~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~ 231 (458)
T 3nmz_A 152 QDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 231 (458)
T ss_dssp CCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence 444 9999999999999999999999999999999952 25779999999999999988
Q ss_pred HHhHHHHHHc-CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccc
Q 040681 272 ALAQDDFARE-NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350 (594)
Q Consensus 272 ~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~ 350 (594)
+.++..+... |+|++||.+|.+++
T Consensus 232 ~~~k~~i~~~~GaIp~LV~LL~s~~------------------------------------------------------- 256 (458)
T 3nmz_A 232 VANKATLCSMKGCMRALVAQLKSES------------------------------------------------------- 256 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGCSC-------------------------------------------------------
T ss_pred cccHHHHHHcCCcHHHHHHHHhCCC-------------------------------------------------------
Confidence 7788888654 55999999998652
Q ss_pred ccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 351 ENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 351 ~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
..++..|+++|++|+.+ +++++..+++.|+++.|+.+| .+++.+++++|+.+|.||+. ++.+.+. .
T Consensus 257 --------~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~---~~~~nk~-~ 324 (458)
T 3nmz_A 257 --------EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA---HCTENKA-D 324 (458)
T ss_dssp --------HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH---HCHHHHH-H
T ss_pred --------HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc---CCHHHHH-H
Confidence 13578899999999864 578899999999999999975 56788999999999999983 2445555 3
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHhhc---CCh-hh----hhccHHHHHHhccCCCHHHHHHHH
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSP---TLQIPAIKSIGSLAR---TFP-AR----ETRVIGPLVAHLSHRNQEVATEAA 497 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~---~v~~~a~~aL~~La~---~~~-~~----~~~~i~~Lv~lL~~~~~~v~~~Aa 497 (594)
+.... ++++.|+++|.+.++. .+++.|+++|+||+. ..+ .+ +.|++++|+.+|.+++.+++++|+
T Consensus 325 I~~~~----Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 325 ICAVD----GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHST----THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHhc----CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence 44333 3899999999876533 589999999999995 233 22 238999999999999999999999
Q ss_pred HHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 498 IALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 498 ~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
|+|+|++. ++ .+++..+++.|+|++|+++|.+++. +++.|+
T Consensus 401 ~aL~nLa~-~~---~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa 442 (458)
T 3nmz_A 401 GTLWNLSA-RN---PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442 (458)
T ss_dssp HHHHHHHS-SC---HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHc-CC---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 99999986 34 5889999999999999999998887 777664
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.9e-31 Score=291.04 Aligned_cols=392 Identities=18% Similarity=0.181 Sum_probs=310.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|.+++++.+..|+++|++++..++ .....+++.|+||.|+++|++++++.++..|+++|++|+.+ ++.+.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 47778999999999999999999999976544 77888999999999999999875589999999999999984 78899
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|++|+|+.+|.++++++++.|+|+|++|+..++.++..+.+.|++++|+.+|.... +. .....+. -++
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~--~v~~~a~--~~L 227 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT---KL--SMLRNAT--WTL 227 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC---CH--HHHHHHH--HHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC---CH--HHHHHHH--HHH
Confidence 9999999999999999999999999999999999988889999999999999999995431 11 0000011 134
Q ss_pred Hhhhhccccc---ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 315 INKEMEKNSF---VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 315 ~~~~~~~~~~---~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
.++....... ...|+++.|+..++. .|+ .++..++++|++++.+.++..+.+.+.|+++.
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~-------------~~~----~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHS-------------NDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTC-------------CCH----HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCC-------------CCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 4554332111 145666666554421 232 45788999999999877777788899999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|+.+|.++++.++..|+++|.||+ .+++..++. +. +. ++++.|+.+|.+..++.++..|+++|+||+...+
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~---~~~~~~~~~-~~-~~----~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~ 361 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIV---TGDDAQTQC-II-DH----QALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-TT----THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHH---cCCHHHHHH-HH-Hh----hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999998 556666653 33 22 3889999999877359999999999999997543
Q ss_pred hh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH---
Q 040681 472 AR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL--- 542 (594)
Q Consensus 472 ~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al--- 542 (594)
.. +.++++.|+.+|.++++.++.+|+++|+|++..++ +++...+++.|++++|+++|..+++ ++..++
T Consensus 362 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 23899999999999999999999999999987434 5888899999999999999998887 777666
Q ss_pred -HHHHHH-------------HHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 -ALEQAR-------------VLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 -~l~~~~-------------~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+.+.+ ....++ +......++++...+++..|..+++.||+.
T Consensus 439 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 439 ENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 222211 233333 334444567777888999999999999884
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-31 Score=301.71 Aligned_cols=299 Identities=16% Similarity=0.167 Sum_probs=255.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-----------------------------hhH---HHHHhcCChHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDND-----------------------------RNK---KIIVEEGGVPPLL 204 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-----------------------------~~~---~~i~~~g~I~~Lv 204 (594)
.|+.||.+|.+++...+..|++.|.|++.+.+ .++ +.|++.|+||+|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 57778999999999999999999999998653 123 7889999999999
Q ss_pred HhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHH---HH
Q 040681 205 KLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDF---AR 280 (594)
Q Consensus 205 ~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i---~~ 280 (594)
++|++++ +.+|++|+|+|+||+.++++|..+++.|++|+|+.+|+++++.+++.|+|+|+||+.+ ++. ..| ..
T Consensus 502 ~LL~s~s-~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~--~~~~~~~~ 578 (810)
T 3now_A 502 ALAKTES-HNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE--VSFSGQRS 578 (810)
T ss_dssp HHHTCCC-HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH--HHTTTHHH
T ss_pred HHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh--hhhcchhh
Confidence 9999998 9999999999999999999999999999999999999999999999999999999975 332 211 12
Q ss_pred cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHH
Q 040681 281 ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIK 360 (594)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~ 360 (594)
.|++++|+.+|.++. . ..
T Consensus 579 ~~aIppLv~LL~~~~---~-----------------------------------------------------------~l 596 (810)
T 3now_A 579 LDVIRPLLNLLQQDC---T-----------------------------------------------------------AL 596 (810)
T ss_dssp HHTHHHHHHTTSTTS---C-----------------------------------------------------------HH
T ss_pred hcHHHHHHHHhCCCC---c-----------------------------------------------------------HH
Confidence 469999999996441 1 01
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
.+..|++||.||+.+++++++.+++.|+++.|+.+|.++++.+|.+|+++|+||+ .+++.+. .|..+.+ ++
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa----~~~~~~~-~~v~~~g----~l 667 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV----MSEDVIK-MFEGNND----RV 667 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT----TSHHHHH-HHHSSSS----HH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh----CChHHHH-HHHhccC----cH
Confidence 2457899999999888899999999999999999999999999999999999997 3445666 3553333 78
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCh-hh----h-hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhh
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFP-AR----E-TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEH 514 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~-~~----~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~ 514 (594)
+.|+.++.+.+ ..++..|+++|+||+...+ .. + .|++++|+++|.+++.++++.|+|+|.|+++ ++ .++
T Consensus 668 ~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-~s---~e~ 742 (810)
T 3now_A 668 KFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-AG---EEI 742 (810)
T ss_dssp HHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT-TC---HHH
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh-CC---HHH
Confidence 99999998765 9999999999999997332 21 2 4899999999999999999999999999987 33 588
Q ss_pred HHHHHHcCChHHHHHhccCC
Q 040681 515 SKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 515 ~~~i~~~g~i~~Lv~lL~~~ 534 (594)
.+.+++.|++++|+++|...
T Consensus 743 ~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 743 AKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHCCCHHHHHHHHhCc
Confidence 99999999999999999865
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-31 Score=302.02 Aligned_cols=350 Identities=16% Similarity=0.136 Sum_probs=275.3
Q ss_pred cchHHHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC
Q 040681 153 PMLSWVWSYIAAIQMG--QLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIAND 229 (594)
Q Consensus 153 ~i~~~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~ 229 (594)
.+...+..++..|.++ |.+.+..|++.|..++.+ +..+..++ +.|+||+|+.+|++++ ..++..|+++|+||+.+
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCC
Confidence 3445567788888887 889999999999999987 56666665 6799999999999988 99999999999999974
Q ss_pred hh------------------------------HH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 230 QE------------------------------RV---RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 230 ~~------------------------------~~---~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
.+ .+ +.+++.|++|+|+.+|+++++++++.|+|+|+||+. +++++.
T Consensus 452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~ 530 (810)
T 3now_A 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRG 530 (810)
T ss_dssp SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHH
T ss_pred chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHH
Confidence 31 22 788899999999999999999999999999999997 567999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.++|++++|+.+|.+++
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~------------------------------------------------------------- 549 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGT------------------------------------------------------------- 549 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSC-------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHccCC-------------------------------------------------------------
Confidence 9999999999999998763
Q ss_pred HHHHHHHHHHHHHHHhccC-ChhhHHH-HHhhCcHHHHHHHhhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCC
Q 040681 357 VKIKLKIACAEALWMLARG-SVANSRR-ISETKGLLCLAKLVEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~-~~~~~~~-i~e~g~l~~L~~LL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~ 433 (594)
...+..|++||.+|+.+ +++..-. ....|++|+|+.||.++. ...+..|+++|.||+ ..+++.++. +.. .
T Consensus 550 --~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa---~~~d~~~~~-Ii~-a 622 (810)
T 3now_A 550 --EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA---SMNESVRQR-IIK-E 622 (810)
T ss_dssp --HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-T
T ss_pred --HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh---cCCHHHHHH-HHH-c
Confidence 12478899999999853 3432110 012469999999998653 345678999999998 555677773 443 2
Q ss_pred hhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 434 PAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 434 ~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
++++.|+.+|.+.+ +.++.+|+++|+||+...+... .|.++.|+.+|++.+..++++|+|+|+|+++ ++
T Consensus 623 ----G~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~-~s 696 (810)
T 3now_A 623 ----QGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS-VS 696 (810)
T ss_dssp ----THHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-HC
T ss_pred ----CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CC
Confidence 37899999998665 8999999999999996543221 3789999999999999999999999999987 33
Q ss_pred ccchhhHHHHHH-cCChHHHHHhccCCch-HhHhHH---------------HHHHHHHHHHHhhhccccccccchHHHHH
Q 040681 509 FLCTEHSKAIIE-FNAVPPLMRLLRGNDR-TQLHGL---------------ALEQARVLTALEGADRTVVAQHPELKELV 571 (594)
Q Consensus 509 ~l~~~~~~~i~~-~g~i~~Lv~lL~~~~~-vq~~Al---------------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~ 571 (594)
.+.++.+++ .|++++|+++|.+++. +|..|+ .+.+++++..|....+..-..++++.+..
T Consensus 697 ---~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 697 ---VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp ---HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 478889998 8999999999999988 888877 23334555555533221112356777777
Q ss_pred HHHHHhccccc
Q 040681 572 SEALYHLNLYH 582 (594)
Q Consensus 572 ~~a~~~l~~~~ 582 (594)
.+|+..+..|.
T Consensus 774 l~aL~~ll~~g 784 (810)
T 3now_A 774 TQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCC
Confidence 77777765543
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=2.7e-29 Score=277.32 Aligned_cols=392 Identities=17% Similarity=0.190 Sum_probs=305.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+..++..|++++++.+..|+..|+.++.. ++.....+++.|+||.|+++|++++++.++..|+++|++++. +++.+.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 477789999999999999999999998654 345667888999999999999997339999999999999998 567888
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|++|.|+.+|+++++++++.|+|+|++|+..++.++..+...|++++|+.+|.+.. .. + ...++ -++
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~--v-~~~a~--~~L 239 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK---PS--L-IRTAT--WTL 239 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC---HH--H-HHHHH--HHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC---HH--H-HHHHH--HHH
Confidence 9999999999999999999999999999999999988889999999999999999997642 10 0 00011 134
Q ss_pred Hhhhhcc-ccc---ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 315 INKEMEK-NSF---VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 315 ~~~~~~~-~~~---~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.++.... ... ...+++++|+..+.. +|+ .++..++++|.+|+.+.++..+.+.+.|+++
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-------------~d~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYS-------------MDT----ETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTC-------------CCH----HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcC-------------CCH----HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 4554332 111 134566666544411 232 4678899999999987788888889999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.|+.+|.+++..++..|+++|.||+ .+++...+. +.. .++++.|+.+|.+.+ +.++..|+++|++|+...
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~~-----~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~ 372 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIV---TGNDLQTQV-VIN-----AGVLPALRLLLSSPK-ENIKKEACWTISNITAGN 372 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHH---cCCHHHHHH-HHH-----cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999997 555655552 332 248899999998775 999999999999999754
Q ss_pred hhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH--
Q 040681 471 PAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL-- 542 (594)
Q Consensus 471 ~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al-- 542 (594)
+.. +.++++.|+.+|.++++.++.+|+|+|+|++..+++ .+++.+.+++.|++++|+.+|...++ ++..|+
T Consensus 373 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~a 451 (530)
T 1wa5_B 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 321 248999999999999999999999999999874331 12678888999999999999998887 877766
Q ss_pred --HHHHH-------------HHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 --ALEQA-------------RVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 --~l~~~-------------~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+... .....++ +......++++....++..|...|+.||+.
T Consensus 452 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 452 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 22211 1222232 333334456666778889999999999874
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=8.6e-31 Score=284.22 Aligned_cols=351 Identities=11% Similarity=0.148 Sum_probs=247.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..++..|++++++.+..|+++|++++.++++++..|++.|+||+|+++|+ +++ ++++++|+|+|+||+.++++|..
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcCHHhHHH
Confidence 4677899999999999999999999999998999999999999999999999 677 99999999999999999889999
Q ss_pred HHhcCCHHHHHHhh--------cCC--------CHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChhhHHHhhhcCCcCC
Q 040681 236 IVSELGVPTIVNVL--------SDS--------IMKVQIQVASLVARMAEHDALAQDDFARE-NVIRPLVTLLSFETFVD 298 (594)
Q Consensus 236 iv~~g~i~~Lv~lL--------~~~--------~~~v~~~aa~aL~~La~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~ 298 (594)
|++ |++|+|+++| +++ +.+++.+|+|+|+|||.+ ++++..+.+. |++++|+.+|.++....
T Consensus 124 i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 999 9999999999 333 456667999999999986 7899999998 99999999998631100
Q ss_pred CccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhc-----
Q 040681 299 DPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLA----- 373 (594)
Q Consensus 299 ~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~----- 373 (594)
+...-....++. ++.|+++........+. ..+.+.. +. +. . ......++++..
T Consensus 202 ~~~~~~~e~a~~--~L~nLs~~~~~~~~~~~-~~~~~~~------------~~---~~---~-~~~~~~~~~~~~~~~~~ 259 (457)
T 1xm9_A 202 RCDDKSVENCMC--VLHNLSYRLDAEVPTRY-RQLEYNA------------RN---AY---T-EKSSTGCFSNKSDKMMN 259 (457)
T ss_dssp CTTCTTHHHHHH--HHHHHTTTHHHHSCCHH-HHHHHTC-----------------------------------------
T ss_pred CCchHHHHHHHH--HHHhcccchhccCcchh-hhccccc------------cc---cc---c-cccccchhhccchhhhh
Confidence 000000000110 12232211000000000 0000000 00 00 0 000011111110
Q ss_pred ----------cCChhhHHHHHhhCcHHHHHHHhhhC-CHHHHHHHHHHHHHHHHHhcCC-HHHHHHhhhcCChhhHHHHH
Q 040681 374 ----------RGSVANSRRISETKGLLCLAKLVEKE-QGELQFNCLMTIMEITAAAESN-ADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 374 ----------~~~~~~~~~i~e~g~l~~L~~LL~~~-~~~v~~~A~~aL~nL~~~~~~~-~~~r~~~~~~~~~~~~~~v~ 441 (594)
..+++..+.+.+.|+++.|+.+|.++ ++.++++|+|+|.|||+..... ..+.+.. +... ++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~-v~~~----~~l~ 334 (457)
T 1xm9_A 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI-GLKE----KGLP 334 (457)
T ss_dssp ------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH-HTTS----CCHH
T ss_pred ccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHH-HHHc----CCch
Confidence 01233455677889999999999865 5899999999999998433221 1342322 3222 2789
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh---hhccHHHHHHhccCCC------HHHHHHHHHHHHHhcCCCCccch
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR---ETRVIGPLVAHLSHRN------QEVATEAAIALQKFASPENFLCT 512 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~---~~~~i~~Lv~lL~~~~------~~v~~~Aa~aL~nl~~~~~~l~~ 512 (594)
.|+++|.+.+ ..++..|+++|+||+...... ..+++++|+++|.+.+ .++...++++|.|+.. ++ .
T Consensus 335 ~Lv~LL~~~~-~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~-~~---~ 409 (457)
T 1xm9_A 335 QIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA-SQ---P 409 (457)
T ss_dssp HHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT-TC---T
T ss_pred HHHHHHhCCC-HhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh-cC---H
Confidence 9999999876 899999999999999865443 2389999999997653 4788999999999987 33 3
Q ss_pred hhHHHHHHcCChHHHHHhccCC-ch-HhHhHH
Q 040681 513 EHSKAIIEFNAVPPLMRLLRGN-DR-TQLHGL 542 (594)
Q Consensus 513 ~~~~~i~~~g~i~~Lv~lL~~~-~~-vq~~Al 542 (594)
++.+.+.+.||+++|++++.++ +. +++.|.
T Consensus 410 ~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 8889999999999999999988 66 776664
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.9e-30 Score=267.34 Aligned_cols=266 Identities=17% Similarity=0.188 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC----------CCHHHHHHHHHHHHHhhCC-hhHHHHHHhc-
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET----------ASSEAQSAAATALYNIAND-QERVRVIVSE- 239 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~----------~~~~v~e~A~~aL~~La~~-~~~~~~iv~~- 239 (594)
.+.+|+++|.+++.+ +++|+.|++.|++++|+.+|... .++.+|++|+|+|.||+.+ ++++..|...
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 455899999999987 89999999999999999999521 1278999999999999985 4578877654
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
|+||+|+++|+++++++++.|+|+|+||+.. ++.++..+.+.|+|++||.+|.... +
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~------------------- 184 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---K------------------- 184 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---C-------------------
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---C-------------------
Confidence 5599999999999999999999999999985 6789999999999999999864331 1
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHH-hhCcHHHHHHHhh
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRIS-ETKGLLCLAKLVE 397 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~-e~g~l~~L~~LL~ 397 (594)
..++..++.+||+|+..+++++..++ ..|+++.|+++|.
T Consensus 185 ----------------------------------------~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~ 224 (354)
T 3nmw_A 185 ----------------------------------------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 224 (354)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc
Confidence 13467889999999876788888888 7999999999998
Q ss_pred hCCH----HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-
Q 040681 398 KEQG----ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA- 472 (594)
Q Consensus 398 ~~~~----~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~- 472 (594)
++++ +++++|+++|.||+.....+++.+.. +. +.| +++.|+.+|++.+ ..+++.|+++|+||+...+.
T Consensus 225 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~-i~-~~g----~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 225 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI-LR-ENN----CLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HH-TTT----HHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH-HH-HcC----CHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHH
Confidence 7654 58999999999998532356677773 44 333 8899999999766 89999999999999954332
Q ss_pred h----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 473 R----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 473 ~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
. +.|++++|+++|.+++..++++|+++|.|++. ++
T Consensus 298 ~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~-~~ 336 (354)
T 3nmw_A 298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA-NR 336 (354)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CC
Confidence 2 23999999999999999999999999999998 44
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=4.9e-29 Score=274.21 Aligned_cols=348 Identities=17% Similarity=0.177 Sum_probs=269.7
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.|+.||..|+ .++++.+.+|+|+|.+++.+++++++.|++.|+||+|+++|++++ +++++.|+|+|+||+.+ ++.|.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHH
Confidence 4777999996 456899999999999999999999999999999999999999998 99999999999999985 66799
Q ss_pred HHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh--hcCCcCCCccCccchh
Q 040681 235 VIVSELGVPTIVNVLSDSI-----MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL--SFETFVDDPRANSGKQ 307 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~-----~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~v~~~~ 307 (594)
.+++.|++++|+.+|.+++ ..++..++|+|++++.+...........++++.|+.+| .+...+.+
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~-------- 251 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD-------- 251 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH--------
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH--------
Confidence 9999999999999998653 45788899999999976433333333456788887765 22221110
Q ss_pred hHHHHHHHhhhhcccc----cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 040681 308 SIHTIVQINKEMEKNS----FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRI 383 (594)
Q Consensus 308 si~~l~l~~~~~~~~~----~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i 383 (594)
+. .++.++...... ..+.|+++.|+.++.. .+ ..++..++++|++++.+++..+..+
T Consensus 252 A~--~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-------------~~----~~v~~~al~aL~nl~~~~~~~~~~i 312 (510)
T 3ul1_B 252 SC--WAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------TE----LPIVTPALRAIGNIVTGTDEQTQKV 312 (510)
T ss_dssp HH--HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-------------SC----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHHhhchhhhHHHHHhcccchhhhhhhcC-------------CC----hhhhhHHHHHHHHhhcCCHHHHHHH
Confidence 01 234444433221 2367788777765522 12 2467889999999998999999999
Q ss_pred HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
++.|+++.|+.+|.+++.+++..|+|+|+||+ .++++.+.. +.. .++++.|+.++.+.+ ..++..|+++|
T Consensus 313 ~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~---a~~~~~~~~-v~~-----~g~i~~Lv~lL~~~~-~~v~~~Aa~aL 382 (510)
T 3ul1_B 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNIT---AGRQDQIQQ-VVN-----HGLVPFLVGVLSKAD-FKTQKEAAWAI 382 (510)
T ss_dssp HHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTHHHHHHHHHHSSC-HHHHHHHHHHH
T ss_pred hhccchHHHHHHhcCCCHHHHHHHHHHHHHHH---cCcHHHHHH-HHh-----cCCHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 99999999999999999999999999999998 566666663 332 238999999999876 99999999999
Q ss_pred HHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc--chhhHHHHHHcCChHHHHHhccCCc
Q 040681 464 GSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL--CTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 464 ~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l--~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+|++...... +.|++++|+.+|++.+++++..+.++|.|+..-+..+ ....+..|.+.||+..|-.|..+.+
T Consensus 383 ~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 462 (510)
T 3ul1_B 383 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 462 (510)
T ss_dssp HHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred HHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 9999754432 3499999999999999999999999999985311000 1233455678999999998887776
Q ss_pred h-HhHhHH
Q 040681 536 R-TQLHGL 542 (594)
Q Consensus 536 ~-vq~~Al 542 (594)
. +.+.|.
T Consensus 463 ~~i~~~A~ 470 (510)
T 3ul1_B 463 ESVYKASL 470 (510)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6 776665
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1.5e-28 Score=271.66 Aligned_cols=348 Identities=17% Similarity=0.174 Sum_probs=272.4
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.|+.||..|. +.+++.+.+|+++|.+++.+++.+++.+++.|+||+|+++|++++ +++++.|+|+|+||+. +++.|.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHHHH
Confidence 4677888886 456899999999999999999999999999999999999999998 9999999999999998 467899
Q ss_pred HHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh--hcCCcCCCccCccchh
Q 040681 235 VIVSELGVPTIVNVLSDSI-----MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL--SFETFVDDPRANSGKQ 307 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~-----~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~v~~~~ 307 (594)
.+++.|++++|+.+|..++ ..++..++|+|++++.+...........++++.|+.+| .....+.+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~-------- 270 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD-------- 270 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHH--------
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHH--------
Confidence 9999999999999998653 45788999999999986533333344456788888775 32221111
Q ss_pred hHHHHHHHhhhhcccc----cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 040681 308 SIHTIVQINKEMEKNS----FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRI 383 (594)
Q Consensus 308 si~~l~l~~~~~~~~~----~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i 383 (594)
+. .++.++...... ..+.|++++|+.++.+ .+ ..++..++++|++++.+++..+..+
T Consensus 271 a~--~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-------------~~----~~v~~~a~~aL~nl~~~~~~~~~~i 331 (529)
T 3tpo_A 271 SC--WAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------TE----LPIVTPALRAIGNIVTGTDEQTQKV 331 (529)
T ss_dssp HH--HHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-------------SC----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-------------CC----hhHHHHHHHHHHHHHccchHHHHHH
Confidence 11 233444433221 2367888888765522 12 2467889999999998899999999
Q ss_pred HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
++.|+++.|+.+|.+++++++..|+|+|+||+ .++++.+.. +. . .++++.|+.++.+.+ ..++..|+++|
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~---~~~~~~~~~-v~-~----~g~i~~Lv~lL~~~~-~~v~~~A~~aL 401 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNIT---AGRQDQIQQ-VV-N----HGLVPFLVGVLSKAD-FKTQKAAAWAI 401 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH---TSCHHHHHH-HH-H----TTHHHHHHHHHHSSC-HHHHHHHHHHH
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHh---cccHHHHHH-HH-h----cCcHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 99999999999999999999999999999998 566666663 33 2 238999999998776 89999999999
Q ss_pred HHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCccc-hhhHHHHHHcCChHHHHHhccCCc
Q 040681 464 GSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASP-ENFLC-TEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 464 ~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~-~~~l~-~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+|++...... +.|+|++|+.+|++.++++...+.++|.|+..- +..-+ ...+..|.+.||+..|-.|..+.+
T Consensus 402 ~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 481 (529)
T 3tpo_A 402 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 481 (529)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS
T ss_pred HHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999654322 349999999999999999999999999998531 11001 223455679999999999888776
Q ss_pred h-HhHhHH
Q 040681 536 R-TQLHGL 542 (594)
Q Consensus 536 ~-vq~~Al 542 (594)
. +.+.|.
T Consensus 482 ~~i~~~A~ 489 (529)
T 3tpo_A 482 ESVYKASL 489 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6 877765
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=268.12 Aligned_cols=354 Identities=16% Similarity=0.195 Sum_probs=259.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCC-----------HHHHHHHHHHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETAS-----------SEAQSAAATALY 224 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~-----------~~v~e~A~~aL~ 224 (594)
..+..++..+.+.+.+ +..+.|..+... +..+..+++.|+||.||++|+..+. ++++.+|+|+|.
T Consensus 32 ~~~~~l~~~~~~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -------------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 3455677777777766 367788888865 6788899999999999999997432 799999999999
Q ss_pred HhhC-ChhHHHHHHhcCCH----------HHHHHhhcCC--CHH-----HHH-------HHHHHHHHHhhcCHHhHHHHH
Q 040681 225 NIAN-DQERVRVIVSELGV----------PTIVNVLSDS--IMK-----VQI-------QVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 225 ~La~-~~~~~~~iv~~g~i----------~~Lv~lL~~~--~~~-----v~~-------~aa~aL~~La~~~~~~~~~i~ 279 (594)
||+. .++......+.|++ +.+++++.+. +.+ +++ +|+|+|.|++. ++++|+.|.
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 9997 66777777777777 7777878765 223 555 99999999987 589999999
Q ss_pred HcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHH
Q 040681 280 RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI 359 (594)
Q Consensus 280 ~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~ 359 (594)
+.|++++|+.+|..+...... ..+ ....
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~---------------------------------------------------~~~-~~~~ 214 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGL---------------------------------------------------TND-HYSI 214 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTT---------------------------------------------------CCC-HHHH
T ss_pred HCCCHHHHHHHHhhhhccccc---------------------------------------------------ccC-CCCH
Confidence 999999999999643100000 000 0112
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHh-hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHhhhcCChhhH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISE-TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAES-NADLRRAAFKTNSPAAK 437 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e-~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~r~~~~~~~~~~~~ 437 (594)
.++..|+++|.||+.+++.++..+.. .|+||.|+.+|.+++++++.+|+|+|.||+ .. +++.+. .+. ..
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs---~~~~~~~k~-~I~-~~---- 285 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS---WRADVNSKK-TLR-EV---- 285 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT---SSCCHHHHH-HHH-HT----
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh---cCCCHHHHH-HHH-Hc----
Confidence 46889999999999888777777754 566999999999999999999999999997 33 456666 344 22
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC-hhh-----hhccHHHHHHhccCCCH----HHHHHHHHHHHHhcC--
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF-PAR-----ETRVIGPLVAHLSHRNQ----EVATEAAIALQKFAS-- 505 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~-~~~-----~~~~i~~Lv~lL~~~~~----~v~~~Aa~aL~nl~~-- 505 (594)
++++.|+++|.+..+..+++.|+.+|+||+... ..+ ..|++++|+++|.+++. +++++|+|+|.|++.
T Consensus 286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 388999998765555899999999999999733 221 34899999999976654 599999999999974
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH---------------HHHHHHHHHHHhhhccccccccchHHH
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL---------------ALEQARVLTALEGADRTVVAQHPELKE 569 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al---------------~l~~~~~l~~Le~~~~~~~~q~~~~~~ 569 (594)
.++ .+++..+++.|++++|+++|.+++. +|++|+ .+.+.+++..|....+. .++.+++
T Consensus 366 a~~---~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s---~~~~v~~ 439 (458)
T 3nmz_A 366 ATN---EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAM 439 (458)
T ss_dssp TTC---HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC---SSHHHHH
T ss_pred cCC---HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC---CCHHHHH
Confidence 123 5888899999999999999998887 888766 23345555555433222 3678888
Q ss_pred HHHHHHHhcccc
Q 040681 570 LVSEALYHLNLY 581 (594)
Q Consensus 570 l~~~a~~~l~~~ 581 (594)
-..+|+..|-.+
T Consensus 440 ~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 440 GSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 888888877443
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=2.1e-28 Score=263.22 Aligned_cols=350 Identities=18% Similarity=0.223 Sum_probs=285.0
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|+++ ++..+..|+++|.+++.+++++.+.+++.|++|.|+++|++++ +++++.|+++|++|+.+ ++.+.
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHH
Confidence 456678888888 8999999999999999988888889999999999999999988 99999999999999985 56889
Q ss_pred HHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 235 VIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
.+++.|+++.|+++|++ .+.+++..++|+|++|+.+. +..+..+. .++++.|+.++.++ +
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~----~------------- 205 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS----D------------- 205 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC----C-------------
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC----C-------------
Confidence 99999999999999996 58999999999999999754 33333333 67899999998654 1
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCL 392 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L 392 (594)
..++..++++|.+++...++....+.+.|+++.|
T Consensus 206 ----------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 239 (450)
T 2jdq_A 206 ----------------------------------------------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239 (450)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence 1346788999999987777888888999999999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
+.+|.+++..++..|+++|.+|+ .+++..++. +. +. ++++.|+.++.+.+ +.++..|+++|++++...+.
T Consensus 240 ~~ll~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~-~~----~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~~~~ 309 (450)
T 2jdq_A 240 VELLMHNDYKVVSPALRAVGNIV---TGDDIQTQV-IL-NC----SALQSLLHLLSSPK-ESIKKEACWTISNITAGNRA 309 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-TT----THHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHCCCchhHHHHHHHHHHHHh---hCChHHHHH-HH-HC----ccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999997 556655552 33 22 38899999998754 89999999999999964432
Q ss_pred h-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH----
Q 040681 473 R-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL---- 542 (594)
Q Consensus 473 ~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al---- 542 (594)
. +.++++.|+++|.+++++++.+|+|+|+|++..++ +++.+.+++.|++++|+++|..+++ ++..|+
T Consensus 310 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 386 (450)
T 2jdq_A 310 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS---AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLE 386 (450)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 24899999999999999999999999999987333 4778888899999999999998877 887766
Q ss_pred HHHHH-------------HHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 ALEQA-------------RVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 ~l~~~-------------~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+... .....++ +......++++....+...|...|+.||+.
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 387 NILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 22211 1122332 233333455667778999999999999863
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=3.9e-29 Score=274.77 Aligned_cols=332 Identities=15% Similarity=0.149 Sum_probs=252.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..||.+|.+++.+++..|+++|++++.+ +++++..|++.|+||+|+++|+++.+.+++++|+++|+||+.+++++..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~ 170 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 477799999999999999999999999985 7999999999999999999999854389999999999999999999999
Q ss_pred HHhcCCHHHHHHhhc------------------CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCC-hhhHHHhhhcCCc
Q 040681 236 IVSELGVPTIVNVLS------------------DSIMKVQIQVASLVARMAEHDALAQDDFARENV-IRPLVTLLSFETF 296 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~------------------~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~ 296 (594)
|++ +++|+|+++|. ..+.+++++|+++|+||+.+++++|..+.+++| +++||.+|.....
T Consensus 171 I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~ 249 (584)
T 3l6x_A 171 IVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG 249 (584)
T ss_dssp HHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 996 57999999871 125799999999999999988888999998765 6799999975310
Q ss_pred CCCccCccchhhHHHHHHHhhhhccc--c------------------cccCCCcccc---------cchhccccCCCccc
Q 040681 297 VDDPRANSGKQSIHTIVQINKEMEKN--S------------------FVGSKNYRPY---------LYSEYCSSRSGQNR 347 (594)
Q Consensus 297 ~~~~~~v~~~~si~~l~l~~~~~~~~--~------------------~~~~g~~~~L---------~~~~~~~s~~~~~~ 347 (594)
..+...-....+++ ++.|++.... . ....+.++.| +.++.
T Consensus 250 ~~~~~~~~~enav~--aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~--------- 318 (584)
T 3l6x_A 250 QKDSDSKLVENCVC--LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK--------- 318 (584)
T ss_dssp TTCCSCHHHHHHHH--HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH---------
T ss_pred ccCccHHHHHHHHH--HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc---------
Confidence 00000000011211 3455553310 0 0122233322 22221
Q ss_pred cccccCChHHHHHHHHHHHHHHHHhccCC----hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHH
Q 040681 348 KDRENEKPEVKIKLKIACAEALWMLARGS----VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNAD 423 (594)
Q Consensus 348 ~~~~~~dp~~k~~l~~~a~~aL~~L~~~~----~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 423 (594)
+..+ ..+++.|++||+|||.++ ..++..+.+.++++.|+.||.+++..++..|+++|.||+... .
T Consensus 319 ---~s~~----~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~----~ 387 (584)
T 3l6x_A 319 ---ESKT----PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA----R 387 (584)
T ss_dssp ---HCCC----HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC----S
T ss_pred ---cCCC----HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----h
Confidence 1122 346889999999998776 344556677899999999999999999999999999998433 2
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHhcCC-------ChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCC--C
Q 040681 424 LRRAAFKTNSPAAKAVVDQLLRVINDLD-------SPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHR--N 489 (594)
Q Consensus 424 ~r~~~~~~~~~~~~~~v~~Ll~lL~s~~-------~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~--~ 489 (594)
++. .|. .++++.|+.+|.+.+ +.+++.+|+++|+||+...+.. +.|+|++|+.+|.++ +
T Consensus 388 ~~~-~I~------~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~ 460 (584)
T 3l6x_A 388 NKE-LIG------KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460 (584)
T ss_dssp CHH-HHH------HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSC
T ss_pred HHH-HHH------hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCC
Confidence 344 231 458999999998763 3678999999999998544322 238999999999876 8
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCC
Q 040681 490 QEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523 (594)
Q Consensus 490 ~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~ 523 (594)
+.+++.|+++|+|+.. +.+.++.+.+.|.
T Consensus 461 ~~v~k~Aa~vL~nl~~-----~~elr~~~kk~G~ 489 (584)
T 3l6x_A 461 EKEVRAAALVLQTIWG-----YKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHHHHHHHHHHHT-----SHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHc-----CHHHHHHHHHcCC
Confidence 8999999999999987 5788888877654
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=1.4e-28 Score=270.32 Aligned_cols=365 Identities=15% Similarity=0.130 Sum_probs=268.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|..+ +++.+..|+.+|.+++.+ +.++..+.+.|+||+|+++|++++ +.++..|+++|++|+.+ +..+.
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHH
Confidence 456678888755 899999999999999987 679999999999999999999998 99999999999999985 56788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH--H
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT--I 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~--l 312 (594)
.+++.|++|.|+++|++++.+++..++.+|.+++..+++++..+.+.|+++.|+.+|.++.... ..+. -
T Consensus 138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~---------~~~~a~~ 208 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK---------LLWTTSR 208 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH---------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH---------HHHHHHH
Confidence 8889999999999999999999999999999999988899999999999999999998763110 0111 1
Q ss_pred HHHhhhhccccc---ccCCCcccccchhcc---------------ccCCCccccc-----------cccCChHHHHHHHH
Q 040681 313 VQINKEMEKNSF---VGSKNYRPYLYSEYC---------------SSRSGQNRKD-----------RENEKPEVKIKLKI 363 (594)
Q Consensus 313 ~l~~~~~~~~~~---~~~g~~~~L~~~~~~---------------~s~~~~~~~~-----------~~~~dp~~k~~l~~ 363 (594)
++.+++...... .+.|++++|+.++.. ++........ -..+++ .++.
T Consensus 209 ~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~ 284 (529)
T 1jdh_A 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVT 284 (529)
T ss_dssp HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCH----HHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCH----HHHH
Confidence 334444332222 145555555433211 1100000000 012343 4578
Q ss_pred HHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 364 ~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
.++++|++|+.+++++++.+.+.|+++.|+.+|.+. +++++..|+++|.||+.....+...+.. +.. .++++
T Consensus 285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-i~~-----~~~i~ 358 (529)
T 1jdh_A 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA-VRL-----HYGLP 358 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH-HHH-----TTCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHH-HHH-----cCChh
Confidence 899999999987788999999999999999999763 3789999999999997221112224542 332 23789
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHH--hcCCCCc------
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQK--FASPENF------ 509 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~n--l~~~~~~------ 509 (594)
.|+++|.+..++.++..++++|+|++...... +.|++++|+.+|.+++++++++|+|++.| +..++++
T Consensus 359 ~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~ 438 (529)
T 1jdh_A 359 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438 (529)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHH
Confidence 99999987765699999999999999754433 23889999999998889999988888877 2221110
Q ss_pred ---------cchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 510 ---------LCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 510 ---------l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
-+++++..+.+.|++++|++++.++++ ++..|.
T Consensus 439 ~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~ 481 (529)
T 1jdh_A 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHH
Confidence 024666778999999999999998887 877665
No 18
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=5.6e-28 Score=252.39 Aligned_cols=255 Identities=14% Similarity=0.189 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSD-----------SIMKVQIQVASLVARMAEHDALAQDDFARE 281 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~-----------~~~~v~~~aa~aL~~La~~~~~~~~~i~~~ 281 (594)
.+.+.+|+|+|+|++.++++|..|++.|++++|+.+|.. .+++++..|+|+|.|||.+++.++..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456678999999999999999999999999999999952 257899999999999999887788888655
Q ss_pred -CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHH
Q 040681 282 -NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIK 360 (594)
Q Consensus 282 -g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~ 360 (594)
|+|++||.+|.+++ ..
T Consensus 126 ~GaIp~LV~LL~s~~---------------------------------------------------------------~~ 142 (354)
T 3nmw_A 126 KGCMRALVAQLKSES---------------------------------------------------------------ED 142 (354)
T ss_dssp HHHHHHHHHGGGCSC---------------------------------------------------------------HH
T ss_pred CCcHHHHHHHHCCCC---------------------------------------------------------------HH
Confidence 45999999997652 13
Q ss_pred HHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 361 LKIACAEALWMLARG-SVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 361 l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
++..|+++|+||+.+ +++++..+++.|+|+.|+++| ++++.+++++|+++|.||+ ..+++.+. .+.... +
T Consensus 143 v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs---~~~~~nk~-~i~~~~----G 214 (354)
T 3nmw_A 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS---AHCTENKA-DICAVD----G 214 (354)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---TTCHHHHH-HHHHST----T
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH---ccChhhhH-HHHHhc----C
Confidence 578899999999864 578899999999999999975 5678899999999999998 43555665 344333 3
Q ss_pred HHHHHHHHHhcCCCh---hhHHHHHHHHHHhhc----CChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 040681 439 VVDQLLRVINDLDSP---TLQIPAIKSIGSLAR----TFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE 507 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~---~v~~~a~~aL~~La~----~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~ 507 (594)
+++.|+++|.+.++. .+++.|+++|+||+. ....+ +.|++++|+++|.+++..++++|+++|.|++. +
T Consensus 215 ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~ 293 (354)
T 3nmw_A 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-R 293 (354)
T ss_dssp HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-S
T ss_pred cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC-C
Confidence 899999999876533 589999999999996 33322 23899999999999999999999999999986 3
Q ss_pred CccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 508 NFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 508 ~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+ .+++..+++.|+|++|+++|.+++. +++.|.
T Consensus 294 ~---~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 294 N---PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp C---HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred C---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 4 5889999999999999999999887 777664
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=1.4e-26 Score=248.98 Aligned_cols=307 Identities=19% Similarity=0.262 Sum_probs=256.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc--cCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAK--DNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERV 233 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~--~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~ 233 (594)
+..++..|++++++.|..|+.+|+.+.. .++.. ..+++. |++|.|+++|++++++.++..|+++|++++. +++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 5567888899999999999999999764 33444 556676 9999999999998339999999999999998 56778
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
..+++.|++|.|+++|+++++++++.|+++|++++..++..+..+.+.|+++.|+.++.++. +
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~-------------- 163 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---R-------------- 163 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---C--------------
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---C--------------
Confidence 88889999999999999999999999999999999988889999999999999999997531 1
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGLLCL 392 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~~L 392 (594)
..++..++++|++++.+. +.....++ .++++.|
T Consensus 164 ---------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L 197 (450)
T 2jdq_A 164 ---------------------------------------------LTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVL 197 (450)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHH
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHH
Confidence 135778999999998655 33333333 7899999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
+.++.++++.++..++|+|.+|+ ...++.+.. +.. .++++.|+.+|.+.+ +.++..|+++|++|+...+.
T Consensus 198 ~~~l~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~~-----~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 198 SWLLFVSDTDVLADACWALSYLS---DGPNDKIQA-VID-----AGVCRRLVELLMHND-YKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHT---SSSHHHHHH-HHH-----TTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHH---CCCcHHHHH-HHH-----cCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhCChH
Confidence 99999999999999999999997 444444442 332 237899999998655 99999999999999976543
Q ss_pred h-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 473 R-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 473 ~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
. +.|+++.|+.+|.+.++.++++|+++|+|++. ++ .++.+.+++.|+++.|+++|..+++ +|..|+
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~-~~---~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA-GN---RAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT-SC---HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CC---HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 2 23899999999999999999999999999987 33 4777888899999999999998877 888766
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.8e-26 Score=260.82 Aligned_cols=360 Identities=16% Similarity=0.138 Sum_probs=270.9
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|..+ +++.+..|+.+|.+++.+ +.++..+.+.|+|++|+++|++++ +.++..|+++|+||+.+ +..+.
T Consensus 57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHH
Confidence 466678888765 899999999999999987 669999999999999999999998 99999999999999984 56788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH--H
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT--I 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~--l 312 (594)
.+++.|++|.|+++|++++++++..++.+|.+|+..+++++..+.+.|+++.|+.+|.+... . ...+. -
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~---~------~~~~~a~~ 205 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY---E------KLLWTTSR 205 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---H------HHHHHHHH
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---H------HHHHHHHH
Confidence 88899999999999999999999999999999998778899999999999999999987631 0 00111 1
Q ss_pred HHHhhhhccccc---ccCCCcccccchhc---------------cccCCCcccc---c--------cccCChHHHHHHHH
Q 040681 313 VQINKEMEKNSF---VGSKNYRPYLYSEY---------------CSSRSGQNRK---D--------RENEKPEVKIKLKI 363 (594)
Q Consensus 313 ~l~~~~~~~~~~---~~~g~~~~L~~~~~---------------~~s~~~~~~~---~--------~~~~dp~~k~~l~~ 363 (594)
++.|++.....+ .+.|++++|+.++. +++....... + -..+|+ .++.
T Consensus 206 ~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~----~v~~ 281 (644)
T 2z6h_A 206 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVT 281 (644)
T ss_dssp HHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCH----HHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCH----HHHH
Confidence 344444333222 14555655543321 1111100000 0 012333 4578
Q ss_pred HHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC-C-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE-Q-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 364 ~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~-~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
.++++|++|+.+++++++.+.+.|+++.|+.+|.+. + ++++..|+++|.||+.....+...+. .+.. .++++
T Consensus 282 ~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~-~v~~-----~~~l~ 355 (644)
T 2z6h_A 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN-AVRL-----HYGLP 355 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH-HHHH-----TTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH-HHHH-----ccChH
Confidence 899999999988888999999999999999999863 3 79999999999999722111112333 2332 23789
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHH----------------------HHHH
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQE----------------------VATE 495 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~----------------------v~~~ 495 (594)
.|+++|.+.+++.++..|+++|+||+...... +.++++.|+++|.+.+.+ ++..
T Consensus 356 ~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~ 435 (644)
T 2z6h_A 356 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 435 (644)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHH
T ss_pred HHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHH
Confidence 99999987765799999999999999755433 338999999999765444 4555
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 496 AAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 496 Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
|+.+|.+++. +.+++..+.+.|++++|+++|.++++ +|+.|+
T Consensus 436 a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 478 (644)
T 2z6h_A 436 CTGALHILAR-----DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478 (644)
T ss_dssp HHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhc-----CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHH
Confidence 6666666655 34666788899999999999998877 887765
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=1.8e-26 Score=253.57 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.+..++..|+++++.++..|+..|.+++.+ +.++..+++. |++++|+++|+++++++++..|+++|++|+.+++++..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 467788899999999999999999999987 5677777754 89999999998763399999999999999999899999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|++|.|+++|++++++++..++++|.+|+.+++..+..+.+.|+++.|+++|.+++
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-------------------- 156 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 156 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--------------------
Confidence 999999999999999999999999999999999987778999999999999999997652
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++.+|++++.++++++..+.+.|+++.|+.+
T Consensus 157 -------------------------------------------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 157 -------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 1236677889999998889999999999999999999
Q ss_pred hhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 396 VEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 396 L~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
|++++ ...+..++.+|.+++ .+++.+.. +.. .++++.|+.++.+.+ +.++..++++|++|++..+...
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~----~~~~~~~~-~~~-----~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~ 262 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLS----VCSSNKPA-IVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE 262 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHT----TSTTHHHH-HHH-----TTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTCS
T ss_pred HHhCChHHHHHHHHHHHHHHh----cCcccHHH-HHH-----CCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcCChhhH
Confidence 98776 456778899999987 24455563 442 238999999998765 8999999999999997654322
Q ss_pred --hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC-Cc-h-HhHhHH
Q 040681 475 --TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-ND-R-TQLHGL 542 (594)
Q Consensus 475 --~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~-~-vq~~Al 542 (594)
.++++.|+++|.+.+++++..|+++|+|++. ++ .+++..+.+.|+++.|+++|.. ++ + ++..|+
T Consensus 263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~---~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-TC---HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CC---HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHH
Confidence 3789999999999999999999999999977 33 4788999999999999999984 32 4 777766
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=1.1e-25 Score=248.09 Aligned_cols=313 Identities=16% Similarity=0.189 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..++..|.++++.++..|+++|.+++.+++.++..+.+.|++++|+++|....++.++..++|+|++|+.+.......
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 46668889999999999999999999999989999999999999999999954333999999999999999864444445
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...|++|.|+.+|.+++++++..++|+|++|+..++.....+.+.|+++.|+.+|.++.
T Consensus 241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--------------------- 299 (528)
T 4b8j_A 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--------------------- 299 (528)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---------------------
Confidence 56899999999999999999999999999999887777778889999999999997652
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..|+++|++++.+++..++.+.+.|+++.|+.+|
T Consensus 300 ------------------------------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 300 ------------------------------------------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH
T ss_pred ------------------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH
Confidence 13477899999999988888889999999999999999
Q ss_pred hhC-CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC-hhh-
Q 040681 397 EKE-QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF-PAR- 473 (594)
Q Consensus 397 ~~~-~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~-~~~- 473 (594)
.++ ++.++..|+|+|.||+ .++++.... +.. .++++.|+.+|.+.+ +.++..|+++|+|++... +..
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~---~~~~~~~~~-~~~-----~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~ 407 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNIT---AGNKDQIQA-VIN-----AGIIGPLVNLLQTAE-FDIKKEAAWAISNATSGGSHDQI 407 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHH---TSCHHHHHH-HHH-----TTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH---CCCHHHHHH-HHH-----CCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHH
Confidence 998 8999999999999998 455555552 332 247899999998875 999999999999999763 221
Q ss_pred ----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCc-------cchhhHHHHHHcCChHHHHHhccCCch-HhHhH
Q 040681 474 ----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENF-------LCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHG 541 (594)
Q Consensus 474 ----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~-------l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~A 541 (594)
+.|++++|+.+|.+.+++++..|+++|.++...+.. -.......+.+.||++.|..+..+.++ ++..|
T Consensus 408 ~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a 487 (528)
T 4b8j_A 408 KYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487 (528)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 238999999999999999999999999999751100 001245677899999999999987776 77766
Q ss_pred H
Q 040681 542 L 542 (594)
Q Consensus 542 l 542 (594)
.
T Consensus 488 ~ 488 (528)
T 4b8j_A 488 V 488 (528)
T ss_dssp H
T ss_pred H
Confidence 5
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=7.3e-26 Score=260.95 Aligned_cols=362 Identities=15% Similarity=0.124 Sum_probs=270.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|..+ +++.+..|+.+|.+++.. +.++..+.+.|+|+.|+++|++++ +.++..|+++|.||+.+ ++.+.
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHH
Confidence 466678888755 899999999999999877 778899999999999999999998 99999999999999985 56788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|+++.|+.+|++++.+++..++.+|.+|+..+++++..+.+.|+++.|+.+|+.+.... ......-++
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~-------~~~~a~~aL 343 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-------LLWTTSRVL 343 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH-------HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHH-------HHHHHHHHH
Confidence 8889999999999999999999999999999999878889999999999999999998763110 000001133
Q ss_pred Hhhhhccccc---ccCCCcccccchhcc---------------ccCCCccccc-----------cccCChHHHHHHHHHH
Q 040681 315 INKEMEKNSF---VGSKNYRPYLYSEYC---------------SSRSGQNRKD-----------RENEKPEVKIKLKIAC 365 (594)
Q Consensus 315 ~~~~~~~~~~---~~~g~~~~L~~~~~~---------------~s~~~~~~~~-----------~~~~dp~~k~~l~~~a 365 (594)
.+++.....+ .+.|++++|+.++.. ++........ -..+++ .++..|
T Consensus 344 ~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~----~vr~~A 419 (780)
T 2z6g_A 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVTCA 419 (780)
T ss_dssp HHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCH----HHHHHH
T ss_pred HHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCH----HHHHHH
Confidence 3333322221 144555555433321 1110000000 012333 457889
Q ss_pred HHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-CC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH
Q 040681 366 AEALWMLARGSVANSRRISETKGLLCLAKLVEK-EQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL 443 (594)
Q Consensus 366 ~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L 443 (594)
+++|++|+.+++++++.+.+.|+++.|+.+|.+ ++ ++++..|+++|.||+.........+.. +.. .++++.|
T Consensus 420 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~-v~~-----~~~l~~L 493 (780)
T 2z6g_A 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA-VRL-----HYGLPVV 493 (780)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH-HHH-----TTCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH-HHH-----cCCHHHH
Confidence 999999998888899999999999999999986 33 489999999999997221111113332 332 2378999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCH----------------------HHHHHHH
Q 040681 444 LRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQ----------------------EVATEAA 497 (594)
Q Consensus 444 l~lL~s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~----------------------~v~~~Aa 497 (594)
+++|.+.+.+.++..|+++|+||+...... +.++++.|+++|.++++ +++..++
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~ 573 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence 999987775699999999999999754433 34889999999976544 4555667
Q ss_pred HHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 498 IALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 498 ~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+|++++. +.+++..+.+.|++++|+++|.++++ ++..|+
T Consensus 574 ~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 614 (780)
T 2z6g_A 574 GALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614 (780)
T ss_dssp HHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH
Confidence 77777765 35677778899999999999998887 887655
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=1.8e-25 Score=246.64 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=261.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-hHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ-ERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~~~~~i 236 (594)
+..++..|.+++++++..|+++|.+++.+++.++..+++.|++++|+++|++++ +.++..|+|+|++|+.+. ......
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~ 253 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWS 253 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHhCCCCCCCcHH
Confidence 556788888899999999999999999988899999999999999999999977 999999999999999754 444455
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...|++|.|+.+|.+++++++..++|+|.+|+..++.....+.+.|+++.|+.+|.++.
T Consensus 254 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~--------------------- 312 (530)
T 1wa5_B 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--------------------- 312 (530)
T ss_dssp HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC---------------------
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC---------------------
Confidence 66899999999999999999999999999999887777888888999999999997541
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..|+++|++++.+++...+.+.+.|+++.|+.+|
T Consensus 313 ------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 313 ------------------------------------------TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred ------------------------------------------hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 13467889999999988888888889999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA---- 472 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~---- 472 (594)
.+++..++..|+|+|.||+ .++++..+. +.. .++++.|+.+|.+.+ +.++..|+++|++++..+..
T Consensus 351 ~~~~~~vr~~A~~aL~~l~---~~~~~~~~~-~~~-----~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~ 420 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNIT---AGNTEQIQA-VID-----ANLIPPLVKLLEVAE-YKTKKEACWAISNASSGGLQRPDI 420 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTTTCTHH
T ss_pred cCCCHHHHHHHHHHHHHHH---cCCHHHHHH-HHH-----CCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999999999997 455555552 332 237899999998765 89999999999999975421
Q ss_pred ----hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCc-------cchhhHHHHHHcCChHHHHHhccCCch-HhHh
Q 040681 473 ----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENF-------LCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH 540 (594)
Q Consensus 473 ----~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~-------l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~ 540 (594)
.+.|++++|+.+|.+.++.++..|+++|.++...... ........+.+.||++.|..|+.+.+. ++..
T Consensus 421 ~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~ 500 (530)
T 1wa5_B 421 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEK 500 (530)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 1348999999999999999999999999999752110 001245667899999999999998877 8776
Q ss_pred HH
Q 040681 541 GL 542 (594)
Q Consensus 541 Al 542 (594)
|.
T Consensus 501 a~ 502 (530)
T 1wa5_B 501 AY 502 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.5e-25 Score=253.43 Aligned_cols=307 Identities=17% Similarity=0.211 Sum_probs=262.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..++..|+++++.+|..|+.+|.+++.++ .++..++.. |++++|+++|+++++++++..|+.+|.+|+.+++++..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 4667888999999999999999999999874 577777754 88999999998874499999999999999999889999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|+++.|+++|+++++.++..|+++|.+|+..++..+..+.+.|+++.|+.+|.+++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-------------------- 153 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 153 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--------------------
Confidence 999999999999999999999999999999999987678888999999999999997652
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++.+|++++.++++++..+.+.|+++.|+.+
T Consensus 154 -------------------------------------------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l 190 (644)
T 2z6h_A 154 -------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190 (644)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence 0236667889999998889999999999999999999
Q ss_pred hhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 396 VEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 396 L~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
|++++ +.+++.++.+|.||+ .++..+.. +.. .++++.|+.++.+.+ ..++..++++|+||++..+...
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs----~~~~~~~~-l~~-----~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~ 259 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLS----VCSSNKPA-IVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE 259 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHT----TCTTHHHH-HHH-----TTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTCC
T ss_pred HHcCChHHHHHHHHHHHHHHh----cCcccHHH-HHH-----CCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhhh
Confidence 98765 577889999999997 34456663 442 238899999998765 8999999999999997553322
Q ss_pred --hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC-Cc-h-HhHhHH
Q 040681 475 --TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-ND-R-TQLHGL 542 (594)
Q Consensus 475 --~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~-~-vq~~Al 542 (594)
.++++.|+++|.+.+++++..|+++|++++. ++ .+++..+.+.|+++.|+++|.. ++ + ++..|+
T Consensus 260 ~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~-~~---~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-TC---HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CC---HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence 3789999999999999999999999999987 33 4778889999999999999985 33 4 777666
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=5.6e-25 Score=217.32 Aligned_cols=240 Identities=27% Similarity=0.306 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~~ 235 (594)
.|..++..|++++++.+..|+++|.+++.+++.++..+++.|+|++|+++|++++ +++++.|+++|++|+.+ ++.+..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHHH
Confidence 3667889999999999999999999999998889999999999999999999998 99999999999999986 889999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|+++.|+.+|++++++++..++++|.+|+..++..+..+.+.|+++.|+.+|.++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-------------------- 141 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-------------------- 141 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--------------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------------------
Confidence 999999999999999999999999999999999878899999999999999999997652
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++++|++++.++++.++.+.+.|+++.|+.+
T Consensus 142 -------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 142 -------------------------------------------SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 1347789999999998888888899999999999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
|.++++.++..|+++|.+|+ ..++..++. +.. .++++.|++++.+.+ +.+++.|+++|+||+...
T Consensus 179 l~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-l~~-----~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIA---SGPTSAIKA-IVD-----AGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGG 243 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHT---TSBHHHHHH-HHH-----TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTC
T ss_pred HCCCCHHHHHHHHHHHHHHH---cCCHHHHHH-HHH-----CCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998 456666662 332 237788888887655 788888888888887544
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.8e-25 Score=220.39 Aligned_cols=237 Identities=19% Similarity=0.299 Sum_probs=202.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~i 236 (594)
...++..|++++++.+..|+++|+++...++.++..+++.|+||+|+++|++++ +++++.|+++|++|+. +++++..+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 345778899999999999999998876667889999999999999999999998 9999999999999997 78899999
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
++.|++|.|+.+|+++++++++.|+++|++|+.+++.....+.+.|+++.|+.+|.++.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--------------------- 151 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--------------------- 151 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC---------------------
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC---------------------
Confidence 99999999999999999999999999999999977544488899999999999996651
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++++|++++.++++.++.+.+.|+++.|+.+|
T Consensus 152 ------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 189 (252)
T 4db8_A 152 ------------------------------------------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189 (252)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 13477899999999988888888999999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
.++++.++..|+++|.||+ ..+++.+.. +. +.|
T Consensus 190 ~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~-------------------------------------------~~g 222 (252)
T 4db8_A 190 SSPNEQILQEALWALSNIA---SGGNEQKQA-VK-------------------------------------------EAG 222 (252)
T ss_dssp GCSSHHHHHHHHHHHHHHT---TSCHHHHHH-HH-------------------------------------------HTT
T ss_pred CCCCHHHHHHHHHHHHHHh---cCCHHHHHH-HH-------------------------------------------HCC
Confidence 9999999999999999997 455544441 11 335
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+++.|+++|.+++++++++|+++|.|++.
T Consensus 223 ~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 223 ALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 66777777777777777777777777653
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=3.1e-24 Score=247.31 Aligned_cols=307 Identities=16% Similarity=0.209 Sum_probs=260.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..|+..|.++++.+|..|+.+|.+++.+ +.++..+.+. |+|+.|+++|++++++++++.|+++|.+|+.+++++..
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 567788889999999999999999999987 5677777754 89999999998773399999999999999999899999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|+++.|+.+|+++++.++..|+++|.+|+..++..+..+.+.|+++.|+.+|.++.
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------------------- 289 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 289 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--------------------
Confidence 999999999999999999999999999999999987788899989999999999997641
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++.+|++++.++++++..+.+.|+++.|+.+
T Consensus 290 -------------------------------------------~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~l 326 (780)
T 2z6g_A 290 -------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326 (780)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 1235678889999988889999999999999999999
Q ss_pred hhhCCH-HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-
Q 040681 396 VEKEQG-ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR- 473 (594)
Q Consensus 396 L~~~~~-~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~- 473 (594)
|++++. ..+..++.+|.+|+. ++..+. .+.. .++++.|+.++.+.+ ..++..|+++|++|+......
T Consensus 327 L~~~~~~~~~~~a~~aL~~Ls~----~~~~~~-~i~~-----~g~l~~Ll~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~ 395 (780)
T 2z6g_A 327 MRTYTYEKLLWTTSRVLKVLSV----CSSNKP-AIVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE 395 (780)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT----STTHHH-HHHH-----TTHHHHHGGGTTCSC-HHHHHHHHHHHHHHHTTCTTCS
T ss_pred HhcCCHHHHHHHHHHHHHHhhc----ChHHHH-HHHH-----hchHHHHHHHHcCCc-hHHHHHHHHHHHHHhccchhhh
Confidence 987764 566788999999982 233445 2332 248899999998765 889999999999999765432
Q ss_pred -hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC-Cc--hHhHhHH
Q 040681 474 -ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-ND--RTQLHGL 542 (594)
Q Consensus 474 -~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~--~vq~~Al 542 (594)
..++++.|+++|++.+++++..|+++|++++. ++ .+.+..+++.|+++.|+++|.. ++ .++..|+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~-~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al 464 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-SC---HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CC---HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHH
Confidence 23789999999999999999999999999987 33 4788889999999999999984 33 3776665
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.8e-24 Score=210.61 Aligned_cols=234 Identities=25% Similarity=0.308 Sum_probs=207.5
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
|+||.|+++|++++ ++++..|+++|++++. +++++..+++.|+++.|+++|++++.+++..++++|.+|+.+++.++.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999998 9999999999999997 455899999999999999999999999999999999999998789999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.+.|+++.|+.+|.++.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~------------------------------------------------------------- 99 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTD------------------------------------------------------------- 99 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSS-------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999997641
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..++++|++++..+++.+..+.+.|+++.|+++|.++++.++..++++|.||+ ..+++.++. +..
T Consensus 100 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~---~~~~~~~~~-~~~----- 168 (252)
T 4hxt_A 100 --SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA---SGPDEAIKA-IVD----- 168 (252)
T ss_dssp --HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH---cCCHHHHHH-HHH-----
Confidence 135788999999998778999999999999999999999999999999999999998 556655552 332
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++++.|+.++.+.+ +.++..|+.+|++|+...+.. +.|+++.|++++.+++++++++|+++|.|++.
T Consensus 169 ~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 169 AGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp TTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 348999999998655 899999999999999754432 24899999999999999999999999999986
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=209.92 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=172.6
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHH
Q 040681 157 WVWSYIAAIQMGQL--SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~--~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~ 233 (594)
.+..+|..|+++++ +.+..|+++|.+++.+++.++..|++.|+||+|+++|++++ +++|+.|+|+|+||+. +++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 46778999999988 88999999999999998999999999999999999999988 9999999999999997 68899
Q ss_pred HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc---CCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF---ETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~~v~~~~si 309 (594)
..|++.|+||+|+++|+ +++.+++++++.+|+||+.++ .++..|.+ +++++|+.++.. +....
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~----------- 154 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEG----------- 154 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGG-----------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCccc-----------
Confidence 99999999999999998 569999999999999999854 67888876 479999987642 21000
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhh-Cc
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET-KG 388 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~-g~ 388 (594)
...|.....++ .++.+|+.+|+||+..+++.++.|.+. |+
T Consensus 155 -----------------------------------~~~~~~~~~~~----~v~~na~~~L~nLss~~~~~R~~~r~~~Gl 195 (233)
T 3tt9_A 155 -----------------------------------DYPKANGLLDF----DIFYNVTGCLRNMSSAGADGRKAMRRCDGL 195 (233)
T ss_dssp -----------------------------------GCCCCCTTCCH----HHHHHHHHHHHHHTTSCHHHHHHHHTSTTH
T ss_pred -----------------------------------ccccccccchH----HHHHHHHHHHHHHhcCCHHHHHHHHHCCCc
Confidence 00111112332 468899999999988788999999976 66
Q ss_pred HHHHHHHhhhC------CHHHHHHHHHHHHHHH
Q 040681 389 LLCLAKLVEKE------QGELQFNCLMTIMEIT 415 (594)
Q Consensus 389 l~~L~~LL~~~------~~~v~~~A~~aL~nL~ 415 (594)
|+.|+.+++.+ +...+++|+.+|.||+
T Consensus 196 i~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 196 IDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 79999999863 4578999999999996
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.4e-22 Score=195.34 Aligned_cols=193 Identities=18% Similarity=0.249 Sum_probs=178.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 040681 159 WSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIV 237 (594)
Q Consensus 159 ~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv 237 (594)
+.++.+|++++++.+..|+++|.+++.+++.++..+++.|+||.|+++|++++ +++++.|+++|+||+. +++.+..++
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 34677889999999999999999999888999999999999999999999998 9999999999999995 778899999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+.|++|.|+.+|+++++.++..|+|+|++|+.+++..+..+.+.|+++.|+.+|.++.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---------------------- 151 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---------------------- 151 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC----------------------
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC----------------------
Confidence 9999999999999999999999999999999888888888999999999999997651
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..++..|+++|++++..+++.+..+.+.|+++.|+.++.
T Consensus 152 -----------------------------------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 152 -----------------------------------------EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh
Confidence 135788999999999877899999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHH
Q 040681 398 KEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~ 415 (594)
+++++++..|+++|.+|+
T Consensus 191 ~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 191 HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999886
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=1.8e-22 Score=200.10 Aligned_cols=230 Identities=19% Similarity=0.249 Sum_probs=198.7
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhh-CChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La-~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
...+.++++|++++ ++++..|+++|+++. .+++.+..+++.|++|.|+++|++++++++..++++|.+|+..+++.+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999998 999999999997755 4677899999999999999999999999999999999999998889999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.+.|+++.|+.+|.++.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~------------------------------------------------------------- 109 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPN------------------------------------------------------------- 109 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999997752
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..|+++|++++.+.+.....+.+.|+++.|+.+|.+++..++..|+++|.||+ ..+++.+.. +
T Consensus 110 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~------- 176 (252)
T 4db8_A 110 --EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQIQA-V------- 176 (252)
T ss_dssp --HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT---TSCHHHHHH-H-------
T ss_pred --HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCChHHHHH-H-------
Confidence 135788999999998655543488999999999999999999999999999999997 444433221 0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
.+.|+++.|+++|.++++.++..|+++|+|++. ++ ++.+.
T Consensus 177 ------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~---~~~~~ 216 (252)
T 4db8_A 177 ------------------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIAS-GG---NEQKQ 216 (252)
T ss_dssp ------------------------------------HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT-SC---HHHHH
T ss_pred ------------------------------------HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc-CC---HHHHH
Confidence 135789999999999999999999999999986 33 57888
Q ss_pred HHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 517 AIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 517 ~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+.+.|+++.|++++.++++ +|..|+
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 89999999999999998877 888775
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=196.65 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=167.0
Q ss_pred ChHHHHHhhccCCCH--HHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH
Q 040681 199 GVPPLLKLLKETASS--EAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~--~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~ 275 (594)
.+|+|+++|++++ + ++|..|+++|.+|+. +++++..|++.|+||+||++|+++++++++.|+|+|.||+..+++++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999987 6 899999999999996 88899999999999999999999999999999999999998788999
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
..|.++|+|++|+++|.+.. +
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~---~-------------------------------------------------------- 108 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR---D-------------------------------------------------------- 108 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC---C--------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHccCC---C--------------------------------------------------------
Confidence 99999999999999997531 1
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh---h-------------CCHHHHHHHHHHHHHHHHHhc
Q 040681 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE---K-------------EQGELQFNCLMTIMEITAAAE 419 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~---~-------------~~~~v~~~A~~aL~nL~~~~~ 419 (594)
..++..++.+||+|+ ..++++..|++. +++.|+.++. + .+.+++++|+++|.||+ .
T Consensus 109 ---~~~~e~a~~aL~nLS-~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLs---s 180 (233)
T 3tt9_A 109 ---LETKKQITGLLWNLS-SNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS---S 180 (233)
T ss_dssp ---HHHHHHHHHHHHHHH-TSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHT---T
T ss_pred ---HHHHHHHHHHHHHHH-cChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHh---c
Confidence 135788999999997 467888888874 7999998763 1 24589999999999998 5
Q ss_pred CCHHHHHHhhhcCChhhHHHHHHHHHHHhcC-----CChhhHHHHHHHHHHhhc
Q 040681 420 SNADLRRAAFKTNSPAAKAVVDQLLRVINDL-----DSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 420 ~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~-----~~~~v~~~a~~aL~~La~ 468 (594)
.+++.|+. +... .++|+.|+.+++.. .+...++.|+++|+||+-
T Consensus 181 ~~~~~R~~-~r~~----~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 181 AGADGRKA-MRRC----DGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp SCHHHHHH-HHTS----TTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHH-HHHC----CCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 56778884 5433 34889999998863 135788999999999984
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1.1e-21 Score=199.59 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHH-hhccCCCHHHHHHHHHHH
Q 040681 157 WVWSYIAAIQMG------------QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLK-LLKETASSEAQSAAATAL 223 (594)
Q Consensus 157 ~i~~lv~~L~~~------------~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~-LL~~~~~~~v~e~A~~aL 223 (594)
.+.+.+..|.+. +.+.|..|+..|.+++.+ .++...+.+.|++|+|+. +|++++ +++++.|+|+|
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~L 106 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 455566666653 446899999999999975 678899999999999999 999998 99999999999
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCcc
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPR 301 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 301 (594)
++++. ++..+..+++.|++|+|+++|+++ +..+++.|+|+|++|+.+++..++.|.+.|++++|+.+|.++.
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d------ 180 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV------ 180 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC------
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC------
Confidence 99998 567899999999999999999965 8999999999999999988888889999999999999997751
Q ss_pred CccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHH
Q 040681 302 ANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSR 381 (594)
Q Consensus 302 ~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~ 381 (594)
..++..|+++|.+++.++++.++
T Consensus 181 ---------------------------------------------------------~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 181 ---------------------------------------------------------QKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHhCChHHHH
Confidence 13578899999999988899999
Q ss_pred HHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 382 RISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 382 ~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
.+++.|+++.|+.+|.+++..+++.|+++|.||+
T Consensus 204 ~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=3e-21 Score=185.96 Aligned_cols=199 Identities=16% Similarity=0.245 Sum_probs=170.9
Q ss_pred hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh
Q 040681 196 EEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA 274 (594)
Q Consensus 196 ~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~ 274 (594)
..|+.++|+.+|++++ ++++..|+++|++|+. +++.+..+++.|++|.|+.+|+++++++++.|+++|++|+..++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3578999999999998 9999999999999995 7788999999999999999999999999999999999999888889
Q ss_pred HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCC
Q 040681 275 QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEK 354 (594)
Q Consensus 275 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~d 354 (594)
+..+.+.|+++.|+.+|.++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~----------------------------------------------------------- 109 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPN----------------------------------------------------------- 109 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSC-----------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHcCCc-----------------------------------------------------------
Confidence 999999999999999997662
Q ss_pred hHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh
Q 040681 355 PEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP 434 (594)
Q Consensus 355 p~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~ 434 (594)
..++..|+++|++++.++++.++.+.+.|+++.|+.+|.+++..++..|+++|.||+ ..++..+.. +..
T Consensus 110 ----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~---~~~~~~~~~-~~~--- 178 (210)
T 4db6_A 110 ----EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQKQA-VKE--- 178 (210)
T ss_dssp ----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH---TSCHHHHHH-HHH---
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH---cCCcHHHHH-HHH---
Confidence 135778999999999888888889999999999999999999999999999999998 555666662 332
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 435 AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 435 ~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
.++++.|++++.+.+ +.+++.|+.+|++|+.
T Consensus 179 --~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 179 --AGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp --TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred --CCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 237788888887554 7788888888888763
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=8.5e-22 Score=200.43 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVN-VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~-lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
.+-+..|+..|.+++.+.++...+++.|++|+|+. +|+++++++++.|+|+|++++.+++.+|+.+.+.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 56788899999999999899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHH
Q 040681 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 292 ~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
.+++ + ..++..|++||++
T Consensus 134 ~~~~---~-----------------------------------------------------------~~v~~~A~~ALsn 151 (296)
T 1xqr_A 134 DRDA---C-----------------------------------------------------------DTVRVKALFAISC 151 (296)
T ss_dssp HHCS---C-----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred ccCC---C-----------------------------------------------------------HHHHHHHHHHHHH
Confidence 7641 1 1347889999999
Q ss_pred hccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 040681 372 LARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD 451 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~ 451 (594)
++.+++...+.+.+.|+++.|+.+|.+++..++..|+|+|.+|+.. +++.++. +
T Consensus 152 l~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~---~~~~~~~-v---------------------- 205 (296)
T 1xqr_A 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHKGT-L---------------------- 205 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHH-H----------------------
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---ChHHHHH-H----------------------
Confidence 9988888888899999999999999999999999999999999843 3333331 1
Q ss_pred ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhc
Q 040681 452 SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLL 531 (594)
Q Consensus 452 ~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL 531 (594)
.+.|++++|+.+|.+++..++..|+++|.|++.+ . ....+.. .. +-..|.++|
T Consensus 206 ---------------------v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~---~~~~~~~-~~-~~~~l~~lL 258 (296)
T 1xqr_A 206 ---------------------CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD-F---PQGVREC-RE-PELGLEELL 258 (296)
T ss_dssp ---------------------HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-C---HHHHHHH-HC-GGGCHHHHH
T ss_pred ---------------------HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC-C---hhHHHHH-hc-cHHHHHHHH
Confidence 1468899999999999999999999999999872 2 1221211 11 112344443
Q ss_pred cCCchHhHhHHHHHHHHHHHHHhhhccccccc-cchHHHHHHHHHHhccccccc
Q 040681 532 RGNDRTQLHGLALEQARVLTALEGADRTVVAQ-HPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 532 ~~~~~vq~~Al~l~~~~~l~~Le~~~~~~~~q-~~~~~~l~~~a~~~l~~~~~~ 584 (594)
+. . + ..+| +++.++.|..|..+|+.||+.
T Consensus 259 ~~---------------~---~------~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 259 RH---------------R---C------QLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HH---------------H---H------HHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HH---------------H---H------HHccchHHHHHHHHHHHHHHHHHcCC
Confidence 21 0 1 1234 345899999999999999973
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8e-21 Score=211.76 Aligned_cols=292 Identities=17% Similarity=0.164 Sum_probs=221.2
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCch--------------------------------------hHHHHHhc
Q 040681 157 WVWSYIAAIQM-GQLSDRIEAAIELASLAKDNDR--------------------------------------NKKIIVEE 197 (594)
Q Consensus 157 ~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~--------------------------------------~~~~i~~~ 197 (594)
.+..|+..+.. ++......++..|.|++...+. +++.+++.
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 35567777774 6777888888888888773221 56788899
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHH---HHHHHHHHHHHHhhc-CHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMK---VQIQVASLVARMAEH-DAL 273 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~---v~~~aa~aL~~La~~-~~~ 273 (594)
|+||+|+.++++++ +.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. +++.|+.+|++|+.. +|.
T Consensus 457 GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLS-PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp THHHHHHHHGGGSC-HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999998 9999999999999999999999999999999999999988544 899999999999854 432
Q ss_pred hHHHHHH---cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccc
Q 040681 274 AQDDFAR---ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350 (594)
Q Consensus 274 ~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~ 350 (594)
..|.. .|+|++|+.+|..++..... +++
T Consensus 536 --~~f~~~~~~~aI~pLv~LL~~~~~~~~~-------~l~---------------------------------------- 566 (778)
T 3opb_A 536 --LIFKKYSALNAIPFLFELLPRSTPVDDN-------PLH---------------------------------------- 566 (778)
T ss_dssp --HHSSSSCSTTHHHHHHHTSCCSSSCSSC-------C------------------------------------------
T ss_pred --HHcCCCccccchHHHHHHcCCCCCcccc-------ccc----------------------------------------
Confidence 23321 38899999999742111000 000
Q ss_pred ccCChHHHHHHHHHHHHHHHHhccCC----hhhHHHHHhh-CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHH
Q 040681 351 ENEKPEVKIKLKIACAEALWMLARGS----VANSRRISET-KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLR 425 (594)
Q Consensus 351 ~~~dp~~k~~l~~~a~~aL~~L~~~~----~~~~~~i~e~-g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r 425 (594)
.+++.. ...+..|+.||.||+..+ ++.++.|+.+ |+++.|..+|.+++..+|..|+++|+||+. +++.+
T Consensus 567 -~~~~~~-~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~----~~e~i 640 (778)
T 3opb_A 567 -NDEQIK-LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS----HPLTI 640 (778)
T ss_dssp --CCCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT----SGGGT
T ss_pred -cccccc-HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC----CcHHH
Confidence 000000 012567899999999765 3568888885 999999999999999999999999999983 33321
Q ss_pred -HHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-h-----hccHHHHHHhccC--CCHHHHHHH
Q 040681 426 -RAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-E-----TRVIGPLVAHLSH--RNQEVATEA 496 (594)
Q Consensus 426 -~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~-----~~~i~~Lv~lL~~--~~~~v~~~A 496 (594)
+..|....|...+.++.|+.++++.+ .+++..|+++|.|++...+.. + .++++.++.+|.+ .+.+++..+
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence 11222233333445899999998765 999999999999997544432 2 2789999999988 899999999
Q ss_pred HHHHHHhcC
Q 040681 497 AIALQKFAS 505 (594)
Q Consensus 497 a~aL~nl~~ 505 (594)
+.++.|++.
T Consensus 720 ~~~l~NL~~ 728 (778)
T 3opb_A 720 LMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999985
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.5e-20 Score=209.60 Aligned_cols=315 Identities=13% Similarity=0.136 Sum_probs=243.9
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhcc-CCCHHHHHHHHHHHHHhhCCh
Q 040681 153 PMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKE-TASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 153 ~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~-~~~~~v~e~A~~aL~~La~~~ 230 (594)
.+..++..++..|..++.+.+..|++.|..++.+ +..|..+++. |.+..|+++++. .+ ..+...++.+|.||+.+.
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCC
Confidence 3444555667778777777899999999999987 7888888765 559999999996 45 789999999999998722
Q ss_pred h---------------------------------------HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 231 E---------------------------------------RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 231 ~---------------------------------------~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
+ ++..+++.|++|+|+.+++++++.+++.++|+|.+|+. +
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-S 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-S
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C
Confidence 1 45677799999999999999999999999999999997 5
Q ss_pred HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccc
Q 040681 272 ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRE 351 (594)
Q Consensus 272 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~ 351 (594)
+.+|..+++.|++++|+.+|.+++..++
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~---------------------------------------------------- 515 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGE---------------------------------------------------- 515 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CC----------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcch----------------------------------------------------
Confidence 7899999999999999999987731110
Q ss_pred cCChHHHHHHHHHHHHHHHHhcc-CChhhHHHHH---hhCcHHHHHHHhhh--CCH------------HHHHHHHHHHHH
Q 040681 352 NEKPEVKIKLKIACAEALWMLAR-GSVANSRRIS---ETKGLLCLAKLVEK--EQG------------ELQFNCLMTIME 413 (594)
Q Consensus 352 ~~dp~~k~~l~~~a~~aL~~L~~-~~~~~~~~i~---e~g~l~~L~~LL~~--~~~------------~v~~~A~~aL~n 413 (594)
..+..|+.||.++.. .++.. .+- -.|++++|+.||.. +.. -.+.+|+.||.|
T Consensus 516 --------~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 516 --------PIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp --------HHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 237789999999873 34443 221 13899999999983 211 127799999999
Q ss_pred HHHHhcCC-HHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-hh----------ccHHHH
Q 040681 414 ITAAAESN-ADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-ET----------RVIGPL 481 (594)
Q Consensus 414 L~~~~~~~-~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~~----------~~i~~L 481 (594)
|+....+. .++|+. +... .++++.|..+|.+.+ ..++..|+.++.||+...... +. +-+++|
T Consensus 586 LAs~~~n~~E~~r~~-Ii~~----~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lL 659 (778)
T 3opb_A 586 LASSETSDGEEVCKH-IVST----KVYWSTIENLMLDEN-VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNIL 659 (778)
T ss_dssp HHHCCSHHHHHHHHH-HHHS----HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHH
T ss_pred HhcCCcccchHHHHH-HHHh----cCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHH
Confidence 98443110 356663 3321 248899999998755 899999999999999755432 11 237899
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHc-CChHHHHHhccC--Cch-HhHhHH
Q 040681 482 VAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF-NAVPPLMRLLRG--NDR-TQLHGL 542 (594)
Q Consensus 482 v~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~-g~i~~Lv~lL~~--~~~-vq~~Al 542 (594)
|.++++++.++|++|+|||+|+++ .+ +..++.+++. +|++.|+.++.. +++ +|..++
T Consensus 660 V~Ll~s~D~~~r~AAagALAnLts-~~---~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~ 720 (778)
T 3opb_A 660 VKLLQLSDVESQRAVAAIFANIAT-TI---PLIAKELLTKKELIENAIQVFADQIDDIELRQRLL 720 (778)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHH-HC---HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcC-CC---hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence 999999999999999999999965 22 4567888876 899999999997 666 877765
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.58 E-value=9.7e-13 Score=143.37 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=230.3
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhC-Chh-
Q 040681 156 SWVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIAN-DQE- 231 (594)
Q Consensus 156 ~~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~-~~~- 231 (594)
..|..|+.+|++. -.+.|+.|+..|+.++++ ++ .-+..+|+++|+..|+.. ++.++...+..+|.++-. +++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4577788888754 678999999999999865 33 345578999999999875 348899999999988654 322
Q ss_pred ----------------HHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-hHHHHHHc-CChhhHHHhhh
Q 040681 232 ----------------RVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL-AQDDFARE-NVIRPLVTLLS 292 (594)
Q Consensus 232 ----------------~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~-~~~~i~~~-g~i~~Lv~lL~ 292 (594)
..+.++ +.+.|+.|+.+|++.+-.+|..+...|..|+.+.+. .++.|... +||+.||.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 122343 578899999999999999999999999999998877 89989865 89999999997
Q ss_pred cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHh
Q 040681 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWML 372 (594)
Q Consensus 293 ~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L 372 (594)
+.. ..++..+...|.+|
T Consensus 177 d~r---------------------------------------------------------------E~iRneallLL~~L 193 (651)
T 3grl_A 177 DSR---------------------------------------------------------------EVIRNDGVLLLQAL 193 (651)
T ss_dssp CSS---------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred Cch---------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 651 13467788999999
Q ss_pred ccCChhhHHHHHhhCcHHHHHHHhhhCCH----HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 040681 373 ARGSVANSRRISETKGLLCLAKLVEKEQG----ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN 448 (594)
Q Consensus 373 ~~~~~~~~~~i~e~g~l~~L~~LL~~~~~----~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~ 448 (594)
+.++.++++.++-+|+++.|+.+++.+.. .+...|+..|.||. ..|+..+. .|...+ +++.|..+++
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL---r~N~sNQ~-~FrEt~-----~i~~L~~LL~ 264 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL---KNNNSNQN-FFKEGS-----YIQRMKPWFE 264 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH---TTCHHHHH-HHHHTT-----CGGGGGGGGC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH---hcCHHHHH-HHHHcC-----CHHHHHHHhC
Confidence 99999999999999999999999986543 67788999999888 77887888 577544 5677777776
Q ss_pred cCCCh---h--hHHH---HHHHHHHhhcCCh------hh-----hhccHHHHHHhccCC--CHHHHHHHHHHHHHhcCCC
Q 040681 449 DLDSP---T--LQIP---AIKSIGSLARTFP------AR-----ETRVIGPLVAHLSHR--NQEVATEAAIALQKFASPE 507 (594)
Q Consensus 449 s~~~~---~--v~~~---a~~aL~~La~~~~------~~-----~~~~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~~ 507 (594)
..+.. . .... +..+++-|..... .. +.|+++.|++++... ...++.+|..+++.+.. +
T Consensus 265 ~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir-g 343 (651)
T 3grl_A 265 VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR-G 343 (651)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT-T
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh-C
Confidence 43311 1 1222 5566666665422 11 238899999998654 67899999999999988 6
Q ss_pred CccchhhHHHHHHcC-----ChHHHHHh----ccCCch--HhHhHH
Q 040681 508 NFLCTEHSKAIIEFN-----AVPPLMRL----LRGNDR--TQLHGL 542 (594)
Q Consensus 508 ~~l~~~~~~~i~~~g-----~i~~Lv~l----L~~~~~--vq~~Al 542 (594)
| +..+..+.+.. ..|.++.+ +.+... +|.+|+
T Consensus 344 N---~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~ 386 (651)
T 3grl_A 344 C---QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386 (651)
T ss_dssp C---HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred C---HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHH
Confidence 6 47777776543 34455554 544443 565555
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=9.4e-13 Score=132.35 Aligned_cols=239 Identities=14% Similarity=0.110 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..++..|.++++.+|..|+++|..+.. .+.++.|+++|++++ +.++..|+++|+.+...+.....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~~~~-- 90 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDN-- 90 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccchH--
Confidence 5567888999999999999999998862 246899999999988 99999999999999864332211
Q ss_pred hcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIV-NVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv-~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
.++.|. .+++++++.++..++++|.++...++... ...++.|+.+|.++.
T Consensus 91 ---l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~--------------------- 141 (280)
T 1oyz_A 91 ---VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS--------------------- 141 (280)
T ss_dssp ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC---------------------
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC---------------------
Confidence 233344 24567899999999999999985443221 124677888776541
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|+++. ++ ++++.|+.++
T Consensus 142 ------------------------------------------~~vR~~a~~aL~~~~--~~---------~~~~~L~~~l 168 (280)
T 1oyz_A 142 ------------------------------------------TNVRRATAFAISVIN--DK---------ATIPLLINLL 168 (280)
T ss_dssp ------------------------------------------HHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHhcC--CH---------HHHHHHHHHH
Confidence 134677888888873 32 4899999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
.++++.++..|+++|.++. ..++ .+++.|+.++.+.+ +.++..|+.+|+++. ...
T Consensus 169 ~d~~~~vr~~a~~aL~~~~---~~~~---------------~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~------~~~ 223 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININK---YDNS---------------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK------DKR 223 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHT---CCCH---------------HHHHHHHHHTTCSC-HHHHHHHHHHHHHTT------CGG
T ss_pred cCCCHHHHHHHHHHHHhhc---cCcH---------------HHHHHHHHHhcCCC-HHHHHHHHHHHHHhC------CHh
Confidence 9999999999999997663 2222 26677888887655 899999999999987 357
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
+++.|+.+|.+.+ ++..|+++|+++.. ...++.|.+++...
T Consensus 224 ~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 224 VLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLPVLDTMLYKF 264 (280)
T ss_dssp GHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHHHHHHHHTTS
T ss_pred hHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhHHHHHHHhcC
Confidence 8999999998755 89999999999844 25788999998743
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.55 E-value=4.5e-12 Score=138.18 Aligned_cols=292 Identities=14% Similarity=0.141 Sum_probs=219.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCch-hHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH-H
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDR-NKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQER-V 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~-~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~-~ 233 (594)
.|.-++.+|.+.+...|..++..|..++..++. ++++|... +||+.|+.+|++.. +.+|.+++..|.+|+.+... +
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHH
Confidence 355578899999999999999999999988777 89999965 99999999999988 99999999999999985555 5
Q ss_pred HHHHhcCCHHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLSDS----IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~----~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
+.+.-+|+++.|+.+++.. ...+.+.+..+|.||..+++.+|..|.+.|+++.|..+|..+.. ..
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~--~~--------- 270 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE--NS--------- 270 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC--SS---------
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc--cc---------
Confidence 5555679999999999864 34788999999999999999999999999999999999875421 10
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC------ChhhHHHH
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG------SVANSRRI 383 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~------~~~~~~~i 383 (594)
.+++.. ..-...+...+..|..+ ...++..+
T Consensus 271 ------------------------------------------~W~~Qk-~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~ 307 (651)
T 3grl_A 271 ------------------------------------------GWSAQK-VTNLHLMLQLVRVLVSPNNPPGATSSCQKAM 307 (651)
T ss_dssp ------------------------------------------CCCHHH-HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred ------------------------------------------ccHHHH-HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 011110 00011244555556544 24578899
Q ss_pred HhhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcC----ChhhHHHHHHHHHHHhcCCChhhHH
Q 040681 384 SETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTN----SPAAKAVVDQLLRVINDLDSPTLQI 457 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~----~~~~~~~v~~Ll~lL~s~~~~~v~~ 457 (594)
.+.|++.+|++++... ...++..|..++..+. .+|+.++. .|..- .|..+.++..|+.++.+.....+|.
T Consensus 308 ~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~i---rgN~~~Q~-~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~ 383 (651)
T 3grl_A 308 FQCGLLQQLCTILMATGVPADILTETINTVSEVI---RGCQVNQD-YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRC 383 (651)
T ss_dssp HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH---TTCHHHHH-HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHH
T ss_pred HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHH---hCCHHHHH-HHhhccCCCCCCcChHHHHHHHHhcccccHHHHH
Confidence 9999999999999765 4678888999998766 78888888 45421 2233557777888887777788999
Q ss_pred HHHHHHHHhhcCChhhhhccH------------------HHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 458 PAIKSIGSLARTFPARETRVI------------------GPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~~~~i------------------~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.|+.++.+.....+..+..++ ..|...|-+.++.-.--|+.+|..+.. +|
T Consensus 384 Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~-~n 451 (651)
T 3grl_A 384 AVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ-EN 451 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc-CC
Confidence 999999998866553332111 123444555666555558888888877 55
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.48 E-value=1.7e-12 Score=130.54 Aligned_cols=231 Identities=15% Similarity=0.101 Sum_probs=171.8
Q ss_pred HhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh
Q 040681 195 VEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA 274 (594)
Q Consensus 195 ~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~ 274 (594)
.+.+.++.|+++|++++ +.++..|+++|+++.. .++++.|+.+|+++++.++..++++|.++.....
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--
Confidence 34578999999999988 9999999999999873 2468999999999999999999999999864221
Q ss_pred HHHHHHcCChhhHHHhhh----cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccc
Q 040681 275 QDDFARENVIRPLVTLLS----FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350 (594)
Q Consensus 275 ~~~i~~~g~i~~Lv~lL~----~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~ 350 (594)
.++.++.+|. .+. +
T Consensus 87 --------~~~~l~~~L~~~~~~d~---~--------------------------------------------------- 104 (280)
T 1oyz_A 87 --------CEDNVFNILNNMALNDK---S--------------------------------------------------- 104 (280)
T ss_dssp --------THHHHHHHHHHHHHHCS---C---------------------------------------------------
T ss_pred --------cchHHHHHHHHHHhcCC---C---------------------------------------------------
Confidence 2333443332 210 1
Q ss_pred ccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhh
Q 040681 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFK 430 (594)
Q Consensus 351 ~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~ 430 (594)
..++..++.+|.+++.+++.. ...+++.|..++.++++.++..|+++|.++. ++
T Consensus 105 --------~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-----~~-------- 158 (280)
T 1oyz_A 105 --------ACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN-----DK-------- 158 (280)
T ss_dssp --------HHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------------
T ss_pred --------HHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-----CH--------
Confidence 135778899999986433321 2246899999999999999999999997653 11
Q ss_pred cCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc
Q 040681 431 TNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL 510 (594)
Q Consensus 431 ~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l 510 (594)
..++.|+.++.+.+ +.++..|+.+|+.+... ...+++.|+.+|++.++.|+..|+++|+++..
T Consensus 159 -------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----- 221 (280)
T 1oyz_A 159 -------ATIPLLINLLKDPN-GDVRNWAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----- 221 (280)
T ss_dssp -------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred -------HHHHHHHHHHcCCC-HHHHHHHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence 15677888887655 88999999999998532 23678999999999999999999999999853
Q ss_pred chhhHHHHHHcCChHHHHHhccCCchHhHhHH----HHHHHHHHHHHh
Q 040681 511 CTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGL----ALEQARVLTALE 554 (594)
Q Consensus 511 ~~~~~~~i~~~g~i~~Lv~lL~~~~~vq~~Al----~l~~~~~l~~Le 554 (594)
..+++.|+.+|..++ ++..|. .+...+++..|.
T Consensus 222 ----------~~~~~~L~~~l~d~~-vr~~a~~aL~~i~~~~~~~~L~ 258 (280)
T 1oyz_A 222 ----------KRVLSVLCDELKKNT-VYDDIIEAAGELGDKTLLPVLD 258 (280)
T ss_dssp ----------GGGHHHHHHHHTSSS-CCHHHHHHHHHHCCGGGHHHHH
T ss_pred ----------HhhHHHHHHHhcCcc-HHHHHHHHHHhcCchhhhHHHH
Confidence 357899999998654 555544 333334455554
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.35 E-value=1.1e-10 Score=128.91 Aligned_cols=322 Identities=16% Similarity=0.165 Sum_probs=216.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhc
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSE 239 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~ 239 (594)
...+...+..+|..|+.+|..++..-+. .......+|.|++++++++ ++++..|+++|+.++.. ++.+....-.
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 3455667788899999999888753111 1223456899999999888 99999999999999862 2222222334
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
..+|.+..++++.+..+|..++++|..++..-. ...+ ....++.|..+++++ +
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~-~~~l~p~l~~~l~d~----~-------------------- 376 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILG--KDNT-IEHLLPLFLAQLKDE----C-------------------- 376 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHHH-HHHTHHHHHHHHTCS----C--------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--HhHH-HHHHHHHHHHHhCCC----c--------------------
Confidence 568889999999999999999999999986311 1111 223677777777543 1
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
..++..++.+|..+...... .......+|.|..++.+.
T Consensus 377 ---------------------------------------~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~ 414 (588)
T 1b3u_A 377 ---------------------------------------PEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDA 414 (588)
T ss_dssp ---------------------------------------HHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCS
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCC
Confidence 12355556666655421110 011234678888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--hhcc
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--ETRV 477 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--~~~~ 477 (594)
+..++..++.+|..++..... .+. .+.+++.+++++.+.+ ..+++.|+.+++.++...... ...+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~-------~~~-----~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~l 481 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGV-------EFF-----DEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHATI 481 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCG-------GGC-----CHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHcCH-------HHH-----HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 889999999999887632211 011 1347788888887654 889999999999998654322 2367
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH----HHH-------
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL----ALE------- 545 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al----~l~------- 545 (594)
+|.|+.++.+.+..++..++++++.++. ...........++.|++++...++ ++..++ .+.
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~-------~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSE-------VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 8888888889999999999999999864 112222334578999999988777 887665 221
Q ss_pred -HHHHHHHHhhhccccccccchHHHHHHHHHHhcc
Q 040681 546 -QARVLTALEGADRTVVAQHPELKELVSEALYHLN 579 (594)
Q Consensus 546 -~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~ 579 (594)
...++..|...... .|++++....+|+..++
T Consensus 555 ~~~~~~p~l~~l~~d---~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 555 LQSEVKPILEKLTQD---QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCC---CchhHHHHHHHHHHHhh
Confidence 12344444432222 37888998888887764
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.33 E-value=4.9e-11 Score=114.45 Aligned_cols=186 Identities=22% Similarity=0.244 Sum_probs=152.5
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
.+.++.|+++|++++ +.++..|+.+|+.+.. ..+++.|+.+|+++++.++..++++|.++..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 467999999999888 9999999999998765 3579999999999999999999999999853
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.++++.|+.+|.++.
T Consensus 80 ----~~~~~~L~~~l~~~~------------------------------------------------------------- 94 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDED------------------------------------------------------------- 94 (211)
T ss_dssp ----GGGHHHHHHHTTCSS-------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHcCCC-------------------------------------------------------------
Confidence 246888888886541
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..++.+|..+ +++ ++++.|+.+|.++++.++..|+++|.++. ++
T Consensus 95 --~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~-------------- 142 (211)
T 3ltm_A 95 --GWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDWFVRIAAAFALGEIG-----DE-------------- 142 (211)
T ss_dssp --HHHHHHHHHHHHHH--CCG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----CG--------------
T ss_pred --HHHHHHHHHHHHHh--CcH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CH--------------
Confidence 13477888999988 333 37899999999999999999999997663 11
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++.|..++++.+ +.++..|+.+|+.+. ...+++.|..++++.++.|+..|..+|.++..
T Consensus 143 -~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 143 -RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp -GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 15677888886554 899999999999996 35688999999999999999999999999865
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=6.4e-11 Score=112.68 Aligned_cols=185 Identities=21% Similarity=0.235 Sum_probs=153.1
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
.+..+.++++|++++ +.++..|+++|+.+.. .++++.|+++|+++++.++..++++|.++..
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 356889999999998 9999999999998865 3578999999999999999999999998843
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
..+++.|+.+|.+..
T Consensus 75 ----~~~~~~L~~~l~d~~------------------------------------------------------------- 89 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDED------------------------------------------------------------- 89 (201)
T ss_dssp ----GGGHHHHHHHTTCSS-------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHcCCC-------------------------------------------------------------
Confidence 246888888886541
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..|+++|+.+ ++++ +++.|..+|.++++.++..|+++|.++. ++
T Consensus 90 --~~vr~~a~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~-------------- 137 (201)
T 3ltj_A 90 --GWVRQSAAVALGQI--GDER---------AVEPLIKALKDEDWFVRIAAAFALGEIG-----DE-------------- 137 (201)
T ss_dssp --HHHHHHHHHHHHHH--CCGG---------GHHHHHHHTTCSSHHHHHHHHHHHHHHT-----CG--------------
T ss_pred --HHHHHHHHHHHHHh--CcHH---------HHHHHHHHHcCCCHHHHHHHHHHHHHhC-----CH--------------
Confidence 13477889999988 3443 7899999999999999999999997663 11
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
..++.|..++.+.+ +.++..|+.+|+.+. ...+++.|..++.+.++.|+..|..+|.++-
T Consensus 138 -~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 -RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 15677888887654 899999999999995 3468899999999999999999999999874
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.29 E-value=4.4e-10 Score=124.11 Aligned_cols=195 Identities=13% Similarity=0.151 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
++..++.+|..++..-. ........+|.|..++.+++++++..++.++..+..... .... .+.++
T Consensus 340 vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~-----------~~~~l 404 (588)
T 1b3u_A 340 VKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-IRQL-----------SQSLL 404 (588)
T ss_dssp HHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-HHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-HHHH-----------HHHHH
Confidence 46667777777642111 111223478999999998889999999999988774321 1111 13377
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
+.+..++.+.+ +.++..++.+|+.++...... ...+++.+..+|.+.+..|+..|+.+|..++.. .....
T Consensus 405 p~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-------~~~~~ 476 (588)
T 1b3u_A 405 PAIVELAEDAK-WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK-------FGKEW 476 (588)
T ss_dssp HHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHH
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-------hCchh
Confidence 78888876544 899999999999998532211 225789999999999999999999999999751 11112
Q ss_pred HHcCChHHHHHhccCCch-HhHhHH----HHHH--------HHHHHHHhhhccccccccchHHHHHHHHHHhcccc
Q 040681 519 IEFNAVPPLMRLLRGNDR-TQLHGL----ALEQ--------ARVLTALEGADRTVVAQHPELKELVSEALYHLNLY 581 (594)
Q Consensus 519 ~~~g~i~~Lv~lL~~~~~-vq~~Al----~l~~--------~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~ 581 (594)
.....+|.|.+++...+. ++..++ .++. ..++..|....+ -.++.+|.-..+++..+-.+
T Consensus 477 ~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 477 AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHH
Confidence 234577888888876666 776665 2221 122222221111 12477888888888777543
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=3e-10 Score=108.84 Aligned_cols=186 Identities=25% Similarity=0.249 Sum_probs=149.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..++..|.++++.+|..|+..|..+.. .++++.|+++|++++ +.++..|+++|+.+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--------
Confidence 46678889999999999999999998753 267999999999988 9999999999999864
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
.++++.|+.+|+++++.++..++++|.++.. ...++.|+.+|.++.
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~--------------------- 125 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDED--------------------- 125 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS---------------------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCC---------------------
Confidence 3578999999999999999999999999853 236788888885541
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|..+ +.+ .+++.|..++
T Consensus 126 ------------------------------------------~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l 152 (211)
T 3ltm_A 126 ------------------------------------------WFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152 (211)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHH--CCG---------GGHHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHHHHHc--CCH---------HHHHHHHHHH
Confidence 13477889999998 333 3789999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++++.++..|+.+|..+. .+ ..++.|..++++.+ +.++..|..+|+++....
T Consensus 153 ~d~~~~vr~~a~~aL~~~~-----~~---------------~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIG-----GE---------------RVRAAMEKLAETGT-GFARKVAVNYLETHKSFN 205 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC-----SH---------------HHHHHHHHHHHHCC-HHHHHHHHHHHHC-----
T ss_pred cCCCHHHHHHHHHHHHHhC-----ch---------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCC
Confidence 9999999999999997763 22 15667777887665 899999999999988543
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=8.6e-10 Score=104.81 Aligned_cols=183 Identities=25% Similarity=0.263 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
....++..|.++++.+|..|+..|..+.. .+.++.|+++|++++ +.++..|+++|+.+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--------
Confidence 45668899999999999999999997753 257899999999888 9999999999999864
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
..+++.|+.+|.++++.++..|+++|.++.. ..+++.|+.+|.++.
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~--------------------- 120 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDED--------------------- 120 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS---------------------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCC---------------------
Confidence 3578999999999999999999999999843 236788888885441
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|..+ +.+ .+++.|..++
T Consensus 121 ------------------------------------------~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l 147 (201)
T 3ltj_A 121 ------------------------------------------WFVRIAAAFALGEI--GDE---------RAVEPLIKAL 147 (201)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHH--TCG---------GGHHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHHHHHh--CCH---------HHHHHHHHHH
Confidence 13477889999988 333 3789999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.++++.++..|+++|..+. ++ ..++.|..++.+.+ +.++..|..+|+++.
T Consensus 148 ~d~~~~vr~~A~~aL~~~~-----~~---------------~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 148 KDEDGWVRQSAADALGEIG-----GE---------------RVRAAMEKLAETGT-GFARKVAVNYLETHK 197 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC-----SH---------------HHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhC-----ch---------------hHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 9999999999999997662 22 15667777887655 899999999999875
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.23 E-value=3.9e-10 Score=131.13 Aligned_cols=302 Identities=11% Similarity=0.081 Sum_probs=197.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHH-H---HhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKI-I---VEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~-i---~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~ 232 (594)
++..++..+.+++...+..|+.+|..++.+.+..-.. . .-...+|.|++++++++ +.++..|+++|.++......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccH
Confidence 5667888889999999999999999998754332110 0 01235788888888887 99999999999988763221
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
...-.-...++.+..++.+++.+++..++++|.+++...++.-.... .+.++.++.++.+.
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~------------------ 268 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ------------------ 268 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC------------------
Confidence 11000124578888889999999999999999999987653211110 12344444444332
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHH--hhCcHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRIS--ETKGLL 390 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~--e~g~l~ 390 (594)
+ ..++..|+..+..++.. ...++.+. -...++
T Consensus 269 -----------------------------------------~----~~vr~~a~e~l~~l~~~-~~~~~~~~~~~~~l~p 302 (852)
T 4fdd_A 269 -----------------------------------------D----ENVALEACEFWLTLAEQ-PICKDVLVRHLPKLIP 302 (852)
T ss_dssp -----------------------------------------S----HHHHHHHHHHHHHHTTS-TTHHHHHTTTHHHHHH
T ss_pred -----------------------------------------c----HHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHH
Confidence 1 12456677777777532 22222111 123566
Q ss_pred HHHHHhh----------hC------------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 040681 391 CLAKLVE----------KE------------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN 448 (594)
Q Consensus 391 ~L~~LL~----------~~------------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~ 448 (594)
.++..+. .+ +..++..|+.+|..++.... .. ..+.+++.+...+.
T Consensus 303 ~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~------------~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DE------------LLPHILPLLKELLF 369 (852)
T ss_dssp HHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GG------------GHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HH------------HHHHHHHHHHHHhc
Confidence 7766662 11 12468888899988874332 11 12347778888887
Q ss_pred cCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCCh
Q 040681 449 DLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524 (594)
Q Consensus 449 s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i 524 (594)
+.+ +.+++.|+.+|++++...... -..+++.|+.+|++.++.|+..|+|+|++++.. . ........-.+.+
T Consensus 370 ~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-~---~~~~~~~~~~~ll 444 (852)
T 4fdd_A 370 HHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW-V---VSQPPDTYLKPLM 444 (852)
T ss_dssp CSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH-H---HHSCTTTTHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-h---ccchHHHHHHHHH
Confidence 654 999999999999999755421 126789999999999999999999999998751 0 0000001112467
Q ss_pred HHHHHhccCCch-HhHhHH
Q 040681 525 PPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 525 ~~Lv~lL~~~~~-vq~~Al 542 (594)
+.|++.|..+++ +|..|+
T Consensus 445 ~~L~~~L~d~~~~vr~~a~ 463 (852)
T 4fdd_A 445 TELLKRILDSNKRVQEAAC 463 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 888888877776 888766
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.21 E-value=1e-09 Score=122.37 Aligned_cols=302 Identities=14% Similarity=0.146 Sum_probs=201.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~ 235 (594)
.+..+...|.+.++.+|..|+.+|..+...+++.. .+.+.++.|.++|.+++ +.++..|+++|+.++.+.. ....
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence 35557778889999999999999999998766532 33577899999999888 9999999999999987432 1000
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
-...+.++.|++.+.+.++-.+.....+|.+++..++.... ..++.+..+|++.+ .
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~---~---------------- 253 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHAN---S---------------- 253 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSST---T----------------
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCC---h----------------
Confidence 00122366777777777888888888888888754432211 23555555554331 0
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC---ChhhHHHHHhhCcHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG---SVANSRRISETKGLLCL 392 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~---~~~~~~~i~e~g~l~~L 392 (594)
.+...|++++..+... +++..+.+ -.++.+.|
T Consensus 254 --------------------------------------------~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L 288 (591)
T 2vgl_B 254 --------------------------------------------AVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPL 288 (591)
T ss_dssp --------------------------------------------HHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHH
Confidence 2355677777777421 23322222 23455667
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHh---------------cCCHHHHHHhhh-----cCChhhHHHHHHHHHHHhcCCC
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAA---------------ESNADLRRAAFK-----TNSPAAKAVVDQLLRVINDLDS 452 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~---------------~~~~~~r~~~~~-----~~~~~~~~~v~~Ll~lL~s~~~ 452 (594)
+.++. +++++|..++.+|..+.... ..+..+|+.++. .+......+++.|..++++.+
T Consensus 289 ~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d- 366 (591)
T 2vgl_B 289 VTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVD- 366 (591)
T ss_dssp HHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSC-
T ss_pred HHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCC-
Confidence 76654 67788888888887776421 111223332211 122224567888888887665
Q ss_pred hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 453 PTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
++++..++++|++++..++......++.|+.+|.+....+..++..++.++.. .++ +. ...+++.|++.+.
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~-~~p---~~-----~~~~v~~L~~~l~ 437 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR-KYP---NK-----YESIIATLCENLD 437 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-HSC---SS-----CCTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HCc---ch-----HHHHHHHHHHHHH
Confidence 89999999999999988876666889999999999999999999999998865 221 11 1457788888886
Q ss_pred C-Cch-HhHhHH
Q 040681 533 G-NDR-TQLHGL 542 (594)
Q Consensus 533 ~-~~~-vq~~Al 542 (594)
. .++ ++..++
T Consensus 438 ~~~~~~~~~~~~ 449 (591)
T 2vgl_B 438 SLDEPDARAAMI 449 (591)
T ss_dssp TCCSHHHHHHHH
T ss_pred hccCHHHHHHHH
Confidence 3 334 544433
No 51
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.16 E-value=1.8e-10 Score=130.51 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=157.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHH-hhccCCCHHHHHHHHHHHHHhhC--ChhHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLK-LLKETASSEAQSAAATALYNIAN--DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~-LL~~~~~~~v~e~A~~aL~~La~--~~~~~~ 234 (594)
|..++..|++.+++.|..|+.+|.+++. ++..++.+..+|+|.+++. +|.+++ .+++++|+++|+||+. ..+.+.
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCchHHH
Confidence 4567888999999999999999999997 5899999999999998765 787777 9999999999999996 467789
Q ss_pred HHHhcCCHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc
Q 040681 235 VIVSELGVPTIVNVLSDSI---------------------MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~---------------------~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~ 293 (594)
.++..|++++|..+|+... .++.+++..+|++||..+.+....+...++++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999985310 2356678899999999888888888888999999998855
Q ss_pred CCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhc
Q 040681 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLA 373 (594)
Q Consensus 294 ~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~ 373 (594)
..... ..+...++.+|..++
T Consensus 194 ~~~~~------------------------------------------------------------~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 194 ADIAP------------------------------------------------------------QDIYEEAISCLTTLS 213 (684)
T ss_dssp HCCSC------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCc------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence 41100 134677899999999
Q ss_pred cCChhhHHHHHhhCcHHHHHHHh--hhCCHHHHHHHHHHHHHHH
Q 040681 374 RGSVANSRRISETKGLLCLAKLV--EKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 374 ~~~~~~~~~i~e~g~l~~L~~LL--~~~~~~v~~~A~~aL~nL~ 415 (594)
..+++..+.+.+.+....+..++ ..++...+..+++.|.|+.
T Consensus 214 ~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 214 EDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp TTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 98999888888877544333333 3444556777899999985
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.15 E-value=1.1e-09 Score=124.06 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=158.8
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhc-CHHh
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIV-NVLSDSIMKVQIQVASLVARMAEH-DALA 274 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv-~lL~~~~~~v~~~aa~aL~~La~~-~~~~ 274 (594)
...|.|+++.|++++ ++.|..|+++|+||+.+++.+..+...|++.+++ .+|.+++.+|++.|+++|+||+.. .++.
T Consensus 33 ~~~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKDLKSPD-AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 356788999999998 9999999999999999999999999999998765 568888999999999999999975 4677
Q ss_pred HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCC
Q 040681 275 QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEK 354 (594)
Q Consensus 275 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~d 354 (594)
...+.+.|++++|..+|............. .....
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~---------------------------------------------~~~~~ 146 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPP---------------------------------------------FSKLL 146 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTB---------------------------------------------GGGSC
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccc---------------------------------------------ccccc
Confidence 888889999999999986541000000000 00000
Q ss_pred hH---HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCC---HHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 355 PE---VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ---GELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 355 p~---~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
.. ....+..+++.+||+||.++.+....+...++++.|+.+|.+.+ .+++..|+.+|.+++ +.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls---~dn~~~~~~- 222 (684)
T 4gmo_A 147 KAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLS---EDNLKVGQA- 222 (684)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH---TTCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh---ccCHHHHHH-
Confidence 00 00123456788999999888888889999999999999985433 578999999999887 888887773
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
+..+ +. ..+...++.+.+ ++ ...+..+++.|.|+.
T Consensus 223 i~~~-~~-~~~~~~ll~~~~-~~-~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 223 ITDD-QE-THVYDVLLKLAT-GT-DPRAVMACGVLHNVF 257 (684)
T ss_dssp HHTC-CS-SCHHHHHHHHHH-SS-CTTHHHHHHHHHHHH
T ss_pred HHhc-ch-HHHHHHHHHHhc-CC-cHHHHHHHHHHHhHh
Confidence 4433 21 123445554443 33 455677889999875
No 53
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.12 E-value=2.8e-09 Score=123.86 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=201.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHH-H--
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRV-I-- 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~-i-- 236 (594)
++..|...++.+|..++.++..+++.+... .-.+.++.|++++.+++ +.+++.++.+|+.++.+.. .... .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 445567788899999999999998753211 01356889999999888 9999999999999986322 1110 0
Q ss_pred -HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 -VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA-QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 -v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.-...+|.|++.+++++.++|..|+++|.++....+.. ...+ ...++.|+.++.++
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~-------------------- 227 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDE-------------------- 227 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCC--------------------
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCC--------------------
Confidence 01235788888899889999999999999887643211 0111 12345555544332
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+ ..++..++++|..++...++.-.... .+.++.+..
T Consensus 228 ---------------------------------------~----~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~ 263 (852)
T 4fdd_A 228 ---------------------------------------E----PEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQ 263 (852)
T ss_dssp ---------------------------------------C----HHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHH
T ss_pred ---------------------------------------C----HHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHH
Confidence 1 13467788999988765544222111 247888888
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh----------cC-----------CCh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN----------DL-----------DSP 453 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~----------s~-----------~~~ 453 (594)
++.+.+++++..|+.++..++ +. ...++ .+ .|....+++.++..+. .. +.+
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~---~~-~~~~~-~~---~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLA---EQ-PICKD-VL---VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHT---TS-TTHHH-HH---TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HccCCcHHHHHHHHHHHHHHh---cc-hhHHH-HH---HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 888888999999999998776 32 22333 12 2345667888887772 22 225
Q ss_pred hhHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 454 TLQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
.++..|+.+|+.|+...+.. -..+++.+...+.+.++.++..|+++|++++. +. .+..... -.+.++.|+.++.
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~-~~---~~~~~~~-l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE-GC---MQGMIPY-LPELIPHLIQCLS 410 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT-TT---HHHHGGG-HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cc---hHHHHHH-HHHHHHHHHHHcC
Confidence 67999999999999654321 12567788888889999999999999999976 22 2222222 2357899999998
Q ss_pred CCch-HhHhHH
Q 040681 533 GNDR-TQLHGL 542 (594)
Q Consensus 533 ~~~~-vq~~Al 542 (594)
..++ |+..|+
T Consensus 411 d~~~~Vr~~a~ 421 (852)
T 4fdd_A 411 DKKALVRSITC 421 (852)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 8777 887665
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.08 E-value=9e-09 Score=115.31 Aligned_cols=287 Identities=17% Similarity=0.139 Sum_probs=199.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
.+-.+..-|++.++..|..|+++|.++.. ++. . ...++.+.++|++.+ +.++..|+.+++++.. +++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-
Confidence 34456667889999999999999999973 322 1 356788999999988 9999999999999987 555332
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC----CcCCCccCccchhhHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE----TFVDDPRANSGKQSIHT 311 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~~v~~~~si~~ 311 (594)
+.++.+..+|.+.++.|+..|+++|..++.++++....+. ..++.|+.+|..- ...++.
T Consensus 179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~----------- 241 (618)
T 1w63_A 179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHD----------- 241 (618)
T ss_dssp ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTC-----------
T ss_pred ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCcccc-----------
Confidence 5678888899999999999999999999987665434443 4788888877542 100000
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
..| ..+ ..++....++|..++..+++.. ...++.
T Consensus 242 --------------~~~-----------------------~~~----~~~q~~il~~L~~l~~~~~~~~-----~~~~~~ 275 (618)
T 1w63_A 242 --------------VSG-----------------------ISD----PFLQVRILRLLRILGRNDDDSS-----EAMNDI 275 (618)
T ss_dssp --------------SSS-----------------------SSC----HHHHHHHHHHHHHHTTTCHHHH-----HTTHHH
T ss_pred --------------ccC-----------------------CCC----ChHHHHHHHHHHHhCCCCHHHH-----HHHHHH
Confidence 000 112 2346667888999977665533 234566
Q ss_pred HHHHhhh------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 392 LAKLVEK------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 392 L~~LL~~------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
|..++.. .+..+...|+.++.++. .++.++. .+++.|.+++.+.+ +.++..|+.+|+.
T Consensus 276 L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~----~~~~l~~-----------~a~~~L~~~L~~~d-~~vr~~aL~~L~~ 339 (618)
T 1w63_A 276 LAQVATNTETSKNVGNAILYETVLTIMDIK----SESGLRV-----------LAINILGRFLLNND-KNIRYVALTSLLK 339 (618)
T ss_dssp HHHHHHTSCCSSTHHHHHHHHHHHHHHHSC----CCHHHHH-----------HHHHHHHHHHTCSS-TTTHHHHHHHHHH
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhcC----CCHHHHH-----------HHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 6666642 23467888888887653 3443333 26678888887665 8999999999999
Q ss_pred hhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 466 LARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++...+..-......++.+|.+.+..+++.|...|.+++...| ...+ ++.|...+...+. ++..++
T Consensus 340 i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n------v~~i-----v~eL~~~l~~~d~e~r~~~v 406 (618)
T 1w63_A 340 TVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN------IRGM-----MKELLYFLDSCEPEFKADCA 406 (618)
T ss_dssp HHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS------THHH-----HHHHHHHHHHCCHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc------HHHH-----HHHHHHHHHhCCHHHHHHHH
Confidence 9965443333566788889999999999999999999987433 2222 3556666654444 554443
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.06 E-value=2e-09 Score=119.95 Aligned_cols=285 Identities=14% Similarity=0.141 Sum_probs=180.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~ 239 (594)
+...|++.++..|..|+.+|.++. +++.... .++.+.++|.+++ +.++..|+.+|.++.. +++.. .+.
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~---~~~ 159 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV---EDQ 159 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH---HHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc---ccc
Confidence 444567889999999999999886 3444333 3678999999888 9999999999999986 44422 234
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+.++.|..+|.+.++.|+..|+++|.+++.+++.....-...+.++.|+..+...+
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~------------------------ 215 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT------------------------ 215 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC------------------------
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC------------------------
Confidence 67899999999999999999999999999876422100000122444555543321
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
...+....++|..++..++... ...++.+..++++.
T Consensus 216 ---------------------------------------~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~ 251 (591)
T 2vgl_B 216 ---------------------------------------EWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA 251 (591)
T ss_dssp ---------------------------------------HHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS
T ss_pred ---------------------------------------chHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC
Confidence 1234455677777764333211 23577888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-------
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA------- 472 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~------- 472 (594)
++.++..|++++.++......+++..+. + ...+.+.|+.++. +++.++..|+.+|+.++...+.
T Consensus 252 ~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~------~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~ 322 (591)
T 2vgl_B 252 NSAVVLSAVKVLMKFLELLPKDSDYYNM-L------LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIK 322 (591)
T ss_dssp TTHHHHHHHHHHHHSCCSCCBTTBSHHH-H------HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTT
T ss_pred ChHHHHHHHHHHHHHhhccCCCHHHHHH-H------HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 8899999999998764110012211110 0 1223444554442 2366666666666666532110
Q ss_pred ---------------------------hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChH
Q 040681 473 ---------------------------RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVP 525 (594)
Q Consensus 473 ---------------------------~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~ 525 (594)
.-..+++.|...+.+.+.+++++++++|++++. .. +... ...++
T Consensus 323 ~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~-~~---~~~~-----~~~v~ 393 (591)
T 2vgl_B 323 VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI-KV---EQSA-----ERCVS 393 (591)
T ss_dssp TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-TC---HHHH-----HHHHH
T ss_pred hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hC---hhHH-----HHHHH
Confidence 001345666677778888899999999998876 21 1111 23568
Q ss_pred HHHHhccCCch-HhHhHH
Q 040681 526 PLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 526 ~Lv~lL~~~~~-vq~~Al 542 (594)
.|++++..... +..+++
T Consensus 394 ~Ll~ll~~~~~~v~~e~i 411 (591)
T 2vgl_B 394 TLLDLIQTKVNYVVQEAI 411 (591)
T ss_dssp HHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcccchHHHHHHH
Confidence 88888886655 555544
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.03 E-value=4.6e-08 Score=109.51 Aligned_cols=314 Identities=13% Similarity=0.077 Sum_probs=213.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
..+.+..+++.+.+.|+-+--++..++..+++.... .+..|.+-|++++ +.++..|+++|+++.. ++. +
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~-~~~----~ 140 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHST-QFVQGLALCTLGCMGS-SEM----C 140 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC-HHH----H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC-HHH----H
Confidence 345566778899999999888999998776553222 4677888899888 9999999999999985 322 2
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
...++.+.++|++.++.||..|+.++.++...+|+.. .+.++.+..+|.+.
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~----------------------- 191 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK----------------------- 191 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC-----------------------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC-----------------------
Confidence 2457889999999999999999999999998766321 13455555555432
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
|| .++..|+.+|..++..+++....+ ...++.|+.+|.
T Consensus 192 ------------------------------------d~----~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~ 229 (618)
T 1w63_A 192 ------------------------------------NH----GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILK 229 (618)
T ss_dssp ------------------------------------CH----HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHH
T ss_pred ------------------------------------CH----hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHH
Confidence 11 246678899999976545432233 257888888876
Q ss_pred h---------------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC-----CChhhHH
Q 040681 398 K---------------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL-----DSPTLQI 457 (594)
Q Consensus 398 ~---------------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~-----~~~~v~~ 457 (594)
. .++..|...+.+|..++ ..+++..+. +.+.|..++... .+..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~---~~~~~~~~~-----------~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILG---RNDDDSSEA-----------MNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp HHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT---TTCHHHHHT-----------THHHHHHHHHTSCCSSTHHHHHHH
T ss_pred HHHcCCCCccccccCCCCChHHHHHHHHHHHhC---CCCHHHHHH-----------HHHHHHHHHhccccccchHHHHHH
Confidence 4 36778888888887665 556644431 344555554321 1257888
Q ss_pred HHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-
Q 040681 458 PAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR- 536 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~- 536 (594)
.|++++..+... +.....+++.|..+|.+.++.++.-|..+|..++. .+-. +++ .....++.+|+..+.
T Consensus 296 ea~~~i~~l~~~-~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~-------~~p~-~~~-~~~~~i~~~l~d~d~~ 365 (618)
T 1w63_A 296 ETVLTIMDIKSE-SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ-------TDHN-AVQ-RHRSTIVDCLKDLDVS 365 (618)
T ss_dssp HHHHHHHHSCCC-HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHH-------HHHH-HHG-GGHHHHHHGGGSSCHH
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh-------hCHH-HHH-HHHHHHHHHccCCChh
Confidence 999999998642 22223578899999999999999999999999975 2222 222 245678888998777
Q ss_pred HhHhHHHHHH--------HHHHHHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 537 TQLHGLALEQ--------ARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 537 vq~~Al~l~~--------~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
++..|+++-. ..++..|..... -.|++++..+..++.++-.
T Consensus 366 Ir~~alelL~~l~~~~nv~~iv~eL~~~l~---~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 366 IKRRAMELSFALVNGNNIRGMMKELLYFLD---SCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHCCSSSTHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 8888883211 112222221111 1367787777777777733
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.01 E-value=6.9e-09 Score=110.83 Aligned_cols=271 Identities=9% Similarity=0.058 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCC-h
Q 040681 156 SWVWSYIAAIQMG--QLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIAND-Q 230 (594)
Q Consensus 156 ~~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~-~ 230 (594)
..+..++..+.++ ++..+..|+.+|..++.+. +..-.... ...++.++++|++.+ ++.++..|+++++++... .
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888 8999999999999998643 11111111 235778888998872 399999999999997642 2
Q ss_pred hHH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 231 ERV-RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA-QDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 231 ~~~-~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
+.- ......-.++.+...+.+++.+++..++++|..++...+.. ...+. .+.++.++..+....
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~------------- 272 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDI------------- 272 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSS-------------
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc-------------
Confidence 111 01111113666777778889999999999999998765321 11110 023343443332220
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh----------
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA---------- 378 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~---------- 378 (594)
..++..+...+..++.....
T Consensus 273 --------------------------------------------------~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 273 --------------------------------------------------DEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 01233344444444321000
Q ss_pred -------hHHHHHh---hCcHHHHHHHhhhC-------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 379 -------NSRRISE---TKGLLCLAKLVEKE-------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 379 -------~~~~i~e---~g~l~~L~~LL~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
....+.+ ...+|.++..|... +..++..|+.+|..++.... .. ....+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~------------~~~~~~~ 369 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD------------IVPHVLP 369 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT------------HHHHHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH------------HHHHHHH
Confidence 0000111 23567777777532 23688899999998874432 11 1233677
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+...+.+.+ +.++..|+.+|++++...... -..++|.|+.+|.+.++.|+..|+++|++++.
T Consensus 370 ~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 370 FIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777887654 999999999999999643311 13689999999999999999999999999975
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.91 E-value=3.7e-08 Score=105.15 Aligned_cols=330 Identities=11% Similarity=0.094 Sum_probs=202.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccC-ch-hHHHHHhcCChHHHHHhhccC--CCHHHHHHHHHHHHHhhCC--hhHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDN-DR-NKKIIVEEGGVPPLLKLLKET--ASSEAQSAAATALYNIAND--QERVR 234 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~-~~~~i~~~g~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~--~~~~~ 234 (594)
++..|.+.+... ..++.+|..++... +. .+ .+.+|.|+..+.++ + +.+++.++.+|+.++.+ ++.-.
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhhH
Confidence 556666666666 77888888887642 11 11 35788999999888 6 99999999999999862 22111
Q ss_pred HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhH--HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 235 VIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQ--DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
... ...++.++..|++. +.++|..|++++.++...-...- +.+.. -.++.|...+.+
T Consensus 168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~----------------- 228 (462)
T 1ibr_B 168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-FIMQVVCEATQC----------------- 228 (462)
T ss_dssp GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH-HHHHHHHHHTTC-----------------
T ss_pred hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhcCC-----------------
Confidence 111 23578889999888 79999999999999764321110 00100 012222222211
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.++ .++..++.+|..++...++.-......+.++
T Consensus 229 ------------------------------------------~~~----~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (462)
T 1ibr_B 229 ------------------------------------------PDT----RVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (462)
T ss_dssp ------------------------------------------SSH----HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH
T ss_pred ------------------------------------------CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3466678888887643332111111115678
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc------------C----ChhhHHHHHHHHHHHhcC----
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT------------N----SPAAKAVVDQLLRVINDL---- 450 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~------------~----~~~~~~~v~~Ll~lL~s~---- 450 (594)
.++..+.+.+++++..|+..+..++.... +... +.. . .+..+.+++.+++.+...
T Consensus 263 ~~~~~~~~~~~~v~~~a~~~l~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~ 337 (462)
T 1ibr_B 263 ITIEAMKSDIDEVALQGIEFWSNVCDEEM---DLAI--EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND 337 (462)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHH---HHHH--HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHH---HHHH--hcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc
Confidence 88888888889999999999988874320 0000 000 0 011245777888887643
Q ss_pred --CChhhHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHH
Q 040681 451 --DSPTLQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPL 527 (594)
Q Consensus 451 --~~~~v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~L 527 (594)
+++.++..|+.+|+.|+...+.. -..+++.+...|.+.++.++..|+.+|+.++.+.. .+..+..+ ...++.|
T Consensus 338 ~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~l-~~~~~~l 413 (462)
T 1ibr_B 338 DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPLV-IQAMPTL 413 (462)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTTT-TTHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHHH-HHHHHHH
Confidence 23578999999999999765421 12567777888899999999999999999986321 11111111 4578899
Q ss_pred HHhccCCch-HhHhHH-HHHHHHHHHHHhhhccccccccchHHHHHHHHHHh
Q 040681 528 MRLLRGNDR-TQLHGL-ALEQARVLTALEGADRTVVAQHPELKELVSEALYH 577 (594)
Q Consensus 528 v~lL~~~~~-vq~~Al-~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~ 577 (594)
+++|...++ +|..|+ .+. .+...+. ..+.+.+.+..+++..+..
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~--~~~~~~~----~~~~~~~~l~~ll~~Ll~~ 459 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVG--RICELLP----EAAINDVYLAPLLQCLIEG 459 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHH--HHHHHGG----GGCCSTTTHHHHHHHHHCC
T ss_pred HHHhcCCCHHHHHHHHHHHH--HHHHhcc----cccccHHHHHHHHHHHHHH
Confidence 999998877 887775 222 1111111 1122345667777655443
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.70 E-value=1e-06 Score=101.80 Aligned_cols=297 Identities=15% Similarity=0.146 Sum_probs=186.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH----HHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER----VRV 235 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~----~~~ 235 (594)
+...+++.+...|..|+.+|+.++.... ..-...+ ...++.|++.+++++ +.++..++++|+.++..-.. ...
T Consensus 374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 3445677888899999999999997642 2112222 246888999998887 99999999999999863110 111
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-----HhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA-----LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
-...+|.++..|++. +.++..++++|.+++..-. .....+ ...++.|+.++.+...
T Consensus 452 --~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~-------------- 512 (861)
T 2bpt_A 452 --LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDN-------------- 512 (861)
T ss_dssp --HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCC--------------
T ss_pred --HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCc--------------
Confidence 123478888888776 8999999999999986310 011111 1124444454433210
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
++ .++..++.+|..+............ ...++
T Consensus 513 -------------------------------------------~~----~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~ 544 (861)
T 2bpt_A 513 -------------------------------------------EF----NARASAFSALTTMVEYATDTVAETS-ASIST 544 (861)
T ss_dssp -------------------------------------------GG----GHHHHHHHHHHHHHHHCCGGGHHHH-HHHHH
T ss_pred -------------------------------------------ch----HHHHHHHHHHHHHHHHcchhhHHHH-HHHHH
Confidence 00 2355667777776543222121111 13567
Q ss_pred HHHHHhhhC---------------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCCh-h
Q 040681 391 CLAKLVEKE---------------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSP-T 454 (594)
Q Consensus 391 ~L~~LL~~~---------------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~-~ 454 (594)
.++..+... ...++..++.+|.+++..... + +. |....+++.++.++.+.+ . .
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~-----~~---~~~~~l~~~l~~~l~~~~-~~~ 613 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--S-----VE---PVADMLMGLFFRLLEKKD-SAF 613 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--G-----TG---GGHHHHHHHHHHHHHSTT-GGG
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--h-----hH---HHHHHHHHHHHHHHccCC-CCc
Confidence 777776532 245777889999888744321 1 11 234568888888888765 5 8
Q ss_pred hHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHh
Q 040681 455 LQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRL 530 (594)
Q Consensus 455 v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~l 530 (594)
+++.++.+++.++...... -..++|.|...|.+.++.++..|+.++..++..-. +...... ...++.+++.
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~-~~l~~~l~~~ 688 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE----EDFRRYS-DAMMNVLAQM 688 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGGHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhccchH-HHHHHHHHHH
Confidence 9999999999998543221 12567888888888888999999999998864111 1111111 2356677777
Q ss_pred ccCCc--h-HhHhHH
Q 040681 531 LRGND--R-TQLHGL 542 (594)
Q Consensus 531 L~~~~--~-vq~~Al 542 (594)
+...+ . ++..++
T Consensus 689 l~~~~~~~~vr~~~~ 703 (861)
T 2bpt_A 689 ISNPNARRELKPAVL 703 (861)
T ss_dssp HHCTTCCTTHHHHHH
T ss_pred hCCccccHhhhHHHH
Confidence 77543 4 665554
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.58 E-value=3.3e-06 Score=97.64 Aligned_cols=268 Identities=9% Similarity=0.073 Sum_probs=169.2
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCchhHHHHHh--cCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCC-h
Q 040681 157 WVWSYIAAIQMG--QLSDRIEAAIELASLAKDNDRNKKIIVE--EGGVPPLLKLLKETA-SSEAQSAAATALYNIAND-Q 230 (594)
Q Consensus 157 ~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~~~~i~~--~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~-~ 230 (594)
.+..++..+.++ ++..|..|+.+|..++..-.. ..+.. ...++.|++.+++++ +..++..|+.+|+++... +
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466677788888 899999999999998864211 11111 234677788887762 389999999999998752 2
Q ss_pred hHH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 231 ERV-RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA-QDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 231 ~~~-~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
.+- ........++.+...+.+.+.+++..++.+|..++...+.. ...+ ....++.++..+.+.. +
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~---~--------- 273 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDI---D--------- 273 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSS---H---------
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCCc---h---------
Confidence 211 11111124677777888889999999999999998765432 1221 1134444444432220 0
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC------------
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS------------ 376 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~------------ 376 (594)
.++..++..+..++...
T Consensus 274 ---------------------------------------------------~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 274 ---------------------------------------------------EVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 11222333333332100
Q ss_pred ---------hhhHHHHHhhCcHHHHHHHhhh-------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 377 ---------VANSRRISETKGLLCLAKLVEK-------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 377 ---------~~~~~~i~e~g~l~~L~~LL~~-------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
....+.. -...++.++..|.. ++..++..|+.+|..++.... . . + ...++
T Consensus 303 ~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~----~--~------~~~~l 368 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D----D--I------VPHVL 368 (876)
T ss_dssp HSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-G----G--G------HHHHH
T ss_pred cCCCccchhHHHHHHH-HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-H----h--h------HHHHH
Confidence 0000000 12356777777753 234688889999988874332 1 1 1 23467
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCh-h-h---hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFP-A-R---ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~-~-~---~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+.+...+.+.+ +.++..|+.+|++++.... . . -..+++.|+..|.+.++.|+..|+++|.+++.
T Consensus 369 ~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 369 PFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77777777654 9999999999999996543 1 1 12578899999999999999999999999975
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.52 E-value=9e-05 Score=85.38 Aligned_cols=305 Identities=12% Similarity=0.041 Sum_probs=188.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccC-ch-hHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCC--hhHH--
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDN-DR-NKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIAND--QERV-- 233 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~-~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~--~~~~-- 233 (594)
++..|..++...|..++.+|..++... +. .+. ..+|.|++.++++ + +.+++.++.+|+.++.. ++.+
T Consensus 100 ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~-----~ll~~L~~~l~~~~~-~~~r~~al~~l~~l~~~~~~~~~~~ 173 (861)
T 2bpt_A 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQP-ENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSC-HHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH-----HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCChhhhHH
Confidence 566778888899999999999887652 21 221 3468888888887 6 99999999999999862 2210
Q ss_pred HHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhH--HHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQ--DDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
... ....++.+...+.++ +.++|..++.+|.++...-...- +.. ....++.|...+.++
T Consensus 174 ~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~--------------- 236 (861)
T 2bpt_A 174 VSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE-RNYLMQVVCEATQAE--------------- 236 (861)
T ss_dssp GGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH-HHHHHHHHHHHHTCS---------------
T ss_pred HHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhH-HHHHHHHHHHHhcCC---------------
Confidence 000 112467777888877 89999999999998754221110 000 011233333333221
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcH
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGL 389 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l 389 (594)
+ ..++..++.+|..++...++.-........+
T Consensus 237 --------------------------------------------~----~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 268 (861)
T 2bpt_A 237 --------------------------------------------D----IEVQAAAFGCLCKIMSKYYTFMKPYMEQALY 268 (861)
T ss_dssp --------------------------------------------C----HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHH
T ss_pred --------------------------------------------C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1345667777777754322211111112566
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHH---------hhhcCChhhHHHHHHHHHHHhcC------CChh
Q 040681 390 LCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRA---------AFKTNSPAAKAVVDQLLRVINDL------DSPT 454 (594)
Q Consensus 390 ~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~---------~~~~~~~~~~~~v~~Ll~lL~s~------~~~~ 454 (594)
+.+...+.+.++.++..|+.++..++............ .+. .+....+++.++..+... +++.
T Consensus 269 ~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~ll~~l~~~~~d~~d~~~~ 346 (861)
T 2bpt_A 269 ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA--LSSIKDVVPNLLNLLTRQNEDPEDDDWN 346 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH--HHHHHHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH--HHHHHHHHHHHHHHHHhcccccccccCc
Confidence 77777788888999999999998876332100000000 000 011245788888888753 2257
Q ss_pred hHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC
Q 040681 455 LQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533 (594)
Q Consensus 455 v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~ 533 (594)
++..+..+|+.++...+.. -..+++.+.+.+.+.++.++..|+++|+.++.+ . .++.....++ ..++.|++.+..
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~-~--~~~~~~~~l~-~il~~l~~~l~d 422 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-P--DKVQRTYYVH-QALPSILNLMND 422 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-S--CHHHHHHHHH-HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC-C--CHHHHHHHHH-HHHHHHHHHcCC
Confidence 8899999999999644311 124567777778889999999999999999752 1 1132223333 367888888887
Q ss_pred Cch-HhHhHH
Q 040681 534 NDR-TQLHGL 542 (594)
Q Consensus 534 ~~~-vq~~Al 542 (594)
.++ ++..++
T Consensus 423 ~~~~vr~~a~ 432 (861)
T 2bpt_A 423 QSLQVKETTA 432 (861)
T ss_dssp SCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 777 777665
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.51 E-value=5.5e-06 Score=95.80 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=171.6
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhhccCchh-HHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 160 SYIAAIQMG--QLSDRIEAAIELASLAKDNDRN-KKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 160 ~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~-~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
.++..+..+ +..+|..|+.+|.+++..-+.+ .........++.+..++.+.+ .+++..++.+|..++. .++.-..
T Consensus 176 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~ 254 (876)
T 1qgr_A 176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMET 254 (876)
T ss_dssp HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345566665 6889999999999877531111 000111124666777777777 9999999999999986 3333222
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH----HHHHH----------------cCChhhHHHhhhcCC
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ----DDFAR----------------ENVIRPLVTLLSFET 295 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~----~~i~~----------------~g~i~~Lv~lL~~~~ 295 (594)
.+....++.++..+.+.+.+++..+.+.+..++....... ....+ ...++.++..+....
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 2333678888888888899999999999999986421100 00000 011222222222110
Q ss_pred cCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC
Q 040681 296 FVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG 375 (594)
Q Consensus 296 ~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~ 375 (594)
. + -+.++. .++..+..+|..++..
T Consensus 335 ~--d--------------------------------------------------~~~~~~----~~r~~a~~~l~~l~~~ 358 (876)
T 1qgr_A 335 E--N--------------------------------------------------DDDDDW----NPCKAAGVCLMLLATC 358 (876)
T ss_dssp S--S--------------------------------------------------CCTTCC----CHHHHHHHHHHHHHHH
T ss_pred c--c--------------------------------------------------cccccc----HHHHHHHHHHHHHHHH
Confidence 0 0 000111 2355667777777532
Q ss_pred ChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCC-HH-HHHHhhhcCChhhHHHHHHHHHHHhcCCCh
Q 040681 376 SVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESN-AD-LRRAAFKTNSPAAKAVVDQLLRVINDLDSP 453 (594)
Q Consensus 376 ~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~-~~-~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~ 453 (594)
..+ .+ -...++.+...+.+.+..++..|++++.+++ ++. ++ +.. + ...+++.++..+.+.. +
T Consensus 359 ~~~---~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~---~~~~~~~~~~--~------~~~~l~~l~~~l~d~~-~ 422 (876)
T 1qgr_A 359 CED---DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL---EGPEPSQLKP--L------VIQAMPTLIELMKDPS-V 422 (876)
T ss_dssp HGG---GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS---SSSCHHHHHH--H------HHHHHHHHHHHHTCSS-H
T ss_pred CcH---hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHH---cCCCHHHHHH--H------HHHHHHHHHHHhCCCC-H
Confidence 211 11 1235667777777888999999999998776 332 12 221 1 2457888888887654 8
Q ss_pred hhHHHHHHHHHHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 454 TLQIPAIKSIGSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++..|+.+|++++...+.. -..+++.|+..|.+. +.|+..|+++|.+++.
T Consensus 423 ~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999754421 126788888888775 8899999999999875
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.47 E-value=4.3e-05 Score=85.32 Aligned_cols=281 Identities=13% Similarity=0.132 Sum_probs=187.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
+.+..+++.+.+.|+-+--++..++..+++.... .+..+.+=|++++ +.++-.|+++|+++.. ++..+
T Consensus 78 ~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~-~e~~~----- 145 (621)
T 2vgl_A 78 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRN-PTFMGLALHCIANVGS-REMAE----- 145 (621)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC-HHHHH-----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC-HHHHH-----
Confidence 4566778999999999999999999876654322 2567777788888 9999999999999954 33322
Q ss_pred CCHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 240 LGVPTIVNVL--SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 240 g~i~~Lv~lL--~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
..++.+.++| .+.++.||..|+-++.++...+|+. +...+.++.|.++|.+. +.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~----d~----------------- 201 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQ----HL----------------- 201 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCS----CH-----------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCC----Cc-----------------
Confidence 3478889999 7889999999999999999876632 22236788888888543 11
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH---
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK--- 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~--- 394 (594)
.++..|..+|..++..+++.. ...++.++.
T Consensus 202 ------------------------------------------~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~ 234 (621)
T 2vgl_A 202 ------------------------------------------GVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLS 234 (621)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHH
T ss_pred ------------------------------------------cHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHH
Confidence 235667778888875454321 123444444
Q ss_pred -HhhhC-------------CHHHHHHHHHHHHHHHHHhc-CCHHHHHHhhhcCChhhHHHHHHHHHHHhcC---------
Q 040681 395 -LVEKE-------------QGELQFNCLMTIMEITAAAE-SNADLRRAAFKTNSPAAKAVVDQLLRVINDL--------- 450 (594)
Q Consensus 395 -LL~~~-------------~~~v~~~A~~aL~nL~~~~~-~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~--------- 450 (594)
++..+ ++-.|......|..++ . .+++.+.. +. .+++.++..+...
T Consensus 235 ~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~---~~~d~~~~~~-l~-------~~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 235 RIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP---PPEDPAVRGR-LT-------ECLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp HHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS---SCSSHHHHHH-HH-------HHHHHHHHHHHSCCSCSSHHHH
T ss_pred HHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC---CCCCHHHHHH-HH-------HHHHHHHHhhccCccccccccc
Confidence 43322 4567776666665443 3 24544442 11 1344444322111
Q ss_pred C-ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHH
Q 040681 451 D-SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMR 529 (594)
Q Consensus 451 ~-~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~ 529 (594)
+ ...|.-.|++++..+. ..+.....++..|..+|.+.+++++.-|..+|..++. .+ +. .. +++ .-...++.
T Consensus 304 n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~-~~---~~-~~-~~~-~~~~~i~~ 375 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLAS-SE---FS-HE-AVK-THIETVIN 375 (621)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTT-CT---TT-HH-HHH-TTHHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHh-cc---Cc-HH-HHH-HHHHHHHH
Confidence 1 2378888999999986 3333334678899999999999999999999999986 22 11 12 222 34667778
Q ss_pred hcc-CCch-HhHhHH
Q 040681 530 LLR-GNDR-TQLHGL 542 (594)
Q Consensus 530 lL~-~~~~-vq~~Al 542 (594)
+|. ..|. ++..|+
T Consensus 376 ~L~~d~d~~Ir~~aL 390 (621)
T 2vgl_A 376 ALKTERDVSVRQRAV 390 (621)
T ss_dssp HHTTCCCHHHHHHHH
T ss_pred HhccCCCHhHHHHHH
Confidence 888 7777 888888
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.44 E-value=3.3e-05 Score=86.26 Aligned_cols=262 Identities=18% Similarity=0.135 Sum_probs=171.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh--ccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL--KETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL--~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
+-.+..-|++.++-.+.-|+.+|.++.. ++.. ...++++.++| .+.+ +-++..|+-++.++.. +++...
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~-----~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~ 184 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMA-----EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVP 184 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH-----HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH-----HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcC
Confidence 3345557788999999999999999853 3332 24578899999 7777 9999999999999987 544321
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh----cC-Cc-CCCccCccchhh
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS----FE-TF-VDDPRANSGKQS 308 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~----~~-~~-~~~~~~v~~~~s 308 (594)
..+.++.+.++|.+.++.|+..|..+|..++..++. .+ ...++.++..|. .+ .+ .++.
T Consensus 185 ---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~-------- 248 (621)
T 2vgl_A 185 ---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE---EF--KTSVSLAVSRLSRIVTSASTDLQDYT-------- 248 (621)
T ss_dssp ---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH---HH--TTHHHHHHHHHHHHHHCCSSSCSTTE--------
T ss_pred ---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHHHHhCCCCCccchh--------
Confidence 247899999999988999999999999999987753 12 124555555443 11 10 0100
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhC
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETK 387 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g 387 (594)
..|.. + .+++....+.|..++.. +++....+.+
T Consensus 249 -----------------~~~~~-----------------------~----~w~qi~il~ll~~~~~~~d~~~~~~l~~-- 282 (621)
T 2vgl_A 249 -----------------YYFVP-----------------------A----PWLSVKLLRLLQCYPPPEDPAVRGRLTE-- 282 (621)
T ss_dssp -----------------ETTEE-----------------------S----HHHHHHHHHHGGGSSSCSSHHHHHHHHH--
T ss_pred -----------------hcCCC-----------------------C----chHHHHHHHHHHHhCCCCCHHHHHHHHH--
Confidence 00101 1 13455556666666542 3444443332
Q ss_pred cHHHHHHHhh---------hCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhH
Q 040681 388 GLLCLAKLVE---------KEQG--ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ 456 (594)
Q Consensus 388 ~l~~L~~LL~---------~~~~--~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~ 456 (594)
.+..++..+. +.+. .+...|+.++..+. .++++++ .+++.|.++|.+.+ +.++
T Consensus 283 ~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~-----------~~~~~L~~~L~~~~-~nir 346 (621)
T 2vgl_A 283 CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLV-----------RACNQLGQFLQHRE-TNLR 346 (621)
T ss_dssp HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHH-----------HHHHHHHHHSSCSC-HHHH
T ss_pred HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----CcHHHHH-----------HHHHHHHHHhcCCC-cchH
Confidence 2333332221 1122 56677777776653 3444433 26677888887554 8899
Q ss_pred HHHHHHHHHhhcCChh--hhhccHHHHHHhcc-CCCHHHHHHHHHHHHHhcC
Q 040681 457 IPAIKSIGSLARTFPA--RETRVIGPLVAHLS-HRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~--~~~~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~ 505 (594)
-.++.+|..++...+. .-......++..|. +.+..++..|...|..++.
T Consensus 347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 9999999999876542 11245677778888 8889999999999999876
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.41 E-value=2.9e-06 Score=102.41 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hh-HHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~-~~~ 234 (594)
.+..++..+.+.|.+.|..|...|.+....+......-.....++.|++.|.+.+ +.+|..|+.+|+.++.. ++ ...
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4667888899999999999999998876542110000011235778999998777 99999999999999862 22 222
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh------HHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA------QDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~------~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
. .++.|+..|.+++..+|..++.+|..++...... .... -...++.|+..+.+. .+
T Consensus 86 ~-----i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~---~~--------- 147 (1230)
T 1u6g_C 86 T-----IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQ---ED--------- 147 (1230)
T ss_dssp H-----HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCC---SC---------
T ss_pred H-----HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCC---Cc---------
Confidence 2 4678888888888899999999999998653211 0111 123566666666421 00
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhC
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETK 387 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g 387 (594)
...+..|..+|..++... ...... -..
T Consensus 148 --------------------------------------------------~~~~~~al~~l~~~~~~~~~~l~~~--~~~ 175 (1230)
T 1u6g_C 148 --------------------------------------------------VSVQLEALDIMADMLSRQGGLLVNF--HPS 175 (1230)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHTCSSCTTT--HHH
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHHhHhHHHHH--HHH
Confidence 123566777777775311 111111 133
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.++.|...|.+++..++..|+.+|..++ .... . .+. ..+++.++..|...++..++..++.+++.++
T Consensus 176 ll~~l~~~L~~~~~~vR~~a~~al~~l~---~~~~---~-~~~------~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 176 ILTCLLPQLTSPRLAVRKRTIIALGHLV---MSCG---N-IVF------VDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHT---TTC--------C------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHH---HhcC---H-HHH------HHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 6788888888888899999999998776 2221 1 121 2378888888877654577888999999998
Q ss_pred cCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 468 RTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 468 ~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
...+.. -..+++.+++.+.+.+++++..|..++..++.
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 644321 13678999999988889999999999888754
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.35 E-value=1.4e-05 Score=91.33 Aligned_cols=253 Identities=14% Similarity=0.027 Sum_probs=166.8
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC-------CHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA-------SSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~-------~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
++++..+.-|+..|+-+..++.. .++..|...|.+.+ .+.++..|+-.||....... + .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~-----e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N-----I 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C-----H
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C-----H
Confidence 34556666666666666544211 13566666676543 25678888888888643111 1 1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
.+++.|..+|.+.+..+++.|+.+|+-+...+ .+ ..++..|+..+... ++
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn------~~ai~~LL~~~~e~---~~-------------------- 521 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GK------PEAIHDMFTYSQET---QH-------------------- 521 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CC------HHHHHHHHHHHHHC---SC--------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CC------HHHHHHHHHHHhcc---Cc--------------------
Confidence 23667788888777777888888888764322 11 12355566655432 11
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh-h
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE-K 398 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~-~ 398 (594)
..+++.++.+|+.+..|+++ .++.++.+|. +
T Consensus 522 ---------------------------------------e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~ 553 (963)
T 4ady_A 522 ---------------------------------------GNITRGLAVGLALINYGRQE---------LADDLITKMLAS 553 (963)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHC
T ss_pred ---------------------------------------HHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhC
Confidence 13466678888888777776 5677777776 4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI 478 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i 478 (594)
.++.++..++.++.--.+ ..+|. ..|+.|+..+.+..++.++..|+.+|+.++...+ ..+
T Consensus 554 ~dp~vRygaa~alglAya-GTGn~---------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----e~v 613 (963)
T 4ady_A 554 DESLLRYGGAFTIALAYA-GTGNN---------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----TTV 613 (963)
T ss_dssp SCHHHHHHHHHHHHHHTT-TSCCH---------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----SSH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCCH---------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----HHH
Confidence 667888888887753222 23443 2567788887777778999999999999874332 468
Q ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 479 GPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 479 ~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+.++.+| ++.++.||..|++||+.+.. +|+ . ..++..|.+++...+. |+..|+
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~a-Gn~-----~-----~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACA-GKG-----L-----QSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTS-SSC-----C-----HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCC-----c-----HHHHHHHHHHccCCCHHHHHHHH
Confidence 8888855 67899999999999999876 552 0 1256677888877777 887766
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.34 E-value=0.0001 Score=67.31 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=142.3
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
...+...+..++.+|.++-..|+.+|...+.+++...|+..+-+ +..|+-+++.. .. +
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks----Ea-----------I-- 84 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS----EA-----------I-- 84 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC----CS-----------H--
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc----cc-----------C--
Confidence 33345568889999999888999999999999998776443332 34455555443 11 0
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
.+-...+++++.++.-+|+..+ +.+|.+..
T Consensus 85 ---------------------------------------------pltqeIa~a~G~la~i~Pe~v~-----~vVp~lfa 114 (253)
T 2db0_A 85 ---------------------------------------------PLTQEIAKAFGQMAKEKPELVK-----SMIPVLFA 114 (253)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHH
T ss_pred ---------------------------------------------chHHHHHHHHhHHHHhCHHHHH-----hhHHHHHH
Confidence 1223457888888877787443 34677777
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
=..-+++.++.|-..+|.+|. ..||.+.. .++.-+..++.+.+ ..-+..|+..++.+..++...-
T Consensus 115 nyrigd~kikIn~~yaLeeIa---ranP~l~~-----------~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv 179 (253)
T 2db0_A 115 NYRIGDEKTKINVSYALEEIA---KANPMLMA-----------SIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYV 179 (253)
T ss_dssp HSCCCSHHHHHHHHHHHHHHH---HHCHHHHH-----------HHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHH
T ss_pred HHhcCCccceecHHHHHHHHH---HhChHHHH-----------HHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCcccc
Confidence 677789999999999999887 55774443 37788888888555 6667788888888887776666
Q ss_pred hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 475 TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 475 ~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
.-++|.|..+|++++.-|+..|+.+|.+++. -| +..++.+
T Consensus 180 ~PfLprL~aLL~D~deiVRaSaVEtL~~lA~-~n---pklRkii 219 (253)
T 2db0_A 180 NPFLPRIINLLHDGDEIVRASAVEALVHLAT-LN---DKLRKVV 219 (253)
T ss_dssp GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT-SC---HHHHHHH
T ss_pred CcchHHHHHHHcCcchhhhHHHHHHHHHHHH-cC---HHHHHHH
Confidence 6889999999999999999999999999988 44 3444443
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.16 E-value=0.00021 Score=65.23 Aligned_cols=215 Identities=15% Similarity=0.202 Sum_probs=151.2
Q ss_pred hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCHH
Q 040681 196 EEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVL-SDSIMKVQIQVASLVARMAEHDAL 273 (594)
Q Consensus 196 ~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL-~~~~~~v~~~aa~aL~~La~~~~~ 273 (594)
+...+..++++|.+.- -.+|.+|...+.+++. -++-...+ +..|..++ ++......+..+.+++.++.-.|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 3456778899998876 8899999999999997 44444333 23344454 455778878899999999987763
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
. +.++|..+.... |-+
T Consensus 104 ~---------v~~vVp~lfany------------------------------------------------------rig- 119 (253)
T 2db0_A 104 L---------VKSMIPVLFANY------------------------------------------------------RIG- 119 (253)
T ss_dssp H---------HHHHHHHHHHHS------------------------------------------------------CCC-
T ss_pred H---------HHhhHHHHHHHH------------------------------------------------------hcC-
Confidence 2 334444443221 011
Q ss_pred ChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCC
Q 040681 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~ 433 (594)
|| +.+.+...+|..++..||+.-. +++.-+..++.+.+..-+..|+..| .+++++.. +- +
T Consensus 120 d~----kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi---~alGen~~--~y---v--- 179 (253)
T 2db0_A 120 DE----KTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFI---EAMGENSF--KY---V--- 179 (253)
T ss_dssp SH----HHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHH---HTCCTTTH--HH---H---
T ss_pred Cc----cceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHH---HHHhccCc--cc---c---
Confidence 22 4466778899998888887443 3467788889888766565555555 55556554 22 1
Q ss_pred hhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 434 PAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 434 ~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
-..++.|..+|...+ .-|+..|+.+|++|+...+. -..+|..-++-+++.+..|++....+|++++.
T Consensus 180 ---~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 180 ---NPFLPRIINLLHDGD-EIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ---GGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ---CcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 238899999998766 88999999999999976654 22566666777899999999999999999865
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.06 E-value=7.7e-05 Score=89.95 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=185.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhH---
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QER--- 232 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~--- 232 (594)
.+..++..|.+.+..+|..|+.+|..++...+.. .+ ...++.|+..|.+++ +.++..|+.+|+.++.. ...
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcccc
Confidence 4555777788889999999999999998653331 11 234677888888877 88999999999998852 111
Q ss_pred ---HHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHH-hHHHHHHcCChhhHHHhhhcCCcCCCccCccchh
Q 040681 233 ---VRVIVSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDAL-AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQ 307 (594)
Q Consensus 233 ---~~~iv~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~ 307 (594)
.... -...+|.|...+. +++..++..+..+|.+++...+. ....+ ...++.|+..|.+.
T Consensus 124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~------------- 187 (1230)
T 1u6g_C 124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSP------------- 187 (1230)
T ss_dssp CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCS-------------
T ss_pred cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCC-------------
Confidence 1111 2346899999998 47899999999999999853211 00000 01223333333221
Q ss_pred hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 308 si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
+ ..++..|+.+|..++...++ .+ -..
T Consensus 188 ----------------------------------------------~----~~vR~~a~~al~~l~~~~~~---~~-~~~ 213 (1230)
T 1u6g_C 188 ----------------------------------------------R----LAVRKRTIIALGHLVMSCGN---IV-FVD 213 (1230)
T ss_dssp ----------------------------------------------S----HHHHHHHHHHHHHHTTTC--------CTT
T ss_pred ----------------------------------------------c----HHHHHHHHHHHHHHHHhcCH---HH-HHH
Confidence 1 13577788999998643322 11 234
Q ss_pred cHHHHHHHhhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 388 GLLCLAKLVEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 388 ~l~~L~~LL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
.++.|+..|...+ ..++..++.++..++.... . .|.+ ....+++.++..+.+.+ +.+++.++.+++.+
T Consensus 214 ~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~------~~~~---~l~~l~~~ll~~l~d~~-~~vR~~a~~~l~~l 282 (1230)
T 1u6g_C 214 LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H------RIGE---YLEKIIPLVVKFCNVDD-DELREYCIQAFESF 282 (1230)
T ss_dssp HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G------GGTT---SCTTHHHHHHHHHSSCC-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H------HHHH---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 5788888887654 3566678888887764321 1 1222 23458899999887554 88999999999999
Q ss_pred hcCChhh----hhccHHHHHHhccC-------------------------------------CCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPAR----ETRVIGPLVAHLSH-------------------------------------RNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~----~~~~i~~Lv~lL~~-------------------------------------~~~~v~~~Aa~aL~nl~~ 505 (594)
+...+.. -..+++.+++.+.. ..+.+++.|+.+|..++.
T Consensus 283 ~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 283 VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 9754321 12455666655531 123578889999998876
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
. . .+.-..++ ...++.|+..+...+. ++..++
T Consensus 363 ~-~---~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 363 T-R---HEMLPEFY-KTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp T-C---CTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHH
T ss_pred h-c---hhHHHHHH-HHHHHHHHHHcCCCchHHHHHHH
Confidence 2 1 12222222 3356778777765555 776665
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.01 E-value=0.00025 Score=81.16 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=161.8
Q ss_pred cchHHHHHHHHHHh--cCC---HHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 040681 153 PMLSWVWSYIAAIQ--MGQ---LSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227 (594)
Q Consensus 153 ~i~~~i~~lv~~L~--~~~---~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La 227 (594)
++...+.+.+..=. .|+ +..+.-|+..|+-..-++.. +.+++.|..+|.+.+ ..+.+.|+.+|+.+-
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~-~~~~~~AalALGli~ 500 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDS-ATSGEAAALGMGLCM 500 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 56788888777554 343 55777788888887554311 134677888888776 777888999999773
Q ss_pred CChhHHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccch
Q 040681 228 NDQERVRVIVSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGK 306 (594)
Q Consensus 228 ~~~~~~~~iv~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~ 306 (594)
....+. .++..|+..+. +.+.+++..++..|+.+...++ ..++.++..|.... ++ +..-
T Consensus 501 vGTgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~---dp--~vRy 560 (963)
T 4ady_A 501 LGTGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASD---ES--LLRY 560 (963)
T ss_dssp TTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCS---CH--HHHH
T ss_pred cccCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCC---CH--HHHH
Confidence 211111 12445555443 4478899999999998876543 35666777665431 11 0000
Q ss_pred hhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhh
Q 040681 307 QSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET 386 (594)
Q Consensus 307 ~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~ 386 (594)
.....+.+++...++ ..++..|+... .+-.+ ..++..|+-+|+.+..++++
T Consensus 561 gaa~alglAyaGTGn-----~~aIq~LL~~~------------~~d~~----d~VRraAViaLGlI~~g~~e-------- 611 (963)
T 4ady_A 561 GGAFTIALAYAGTGN-----NSAVKRLLHVA------------VSDSN----DDVRRAAVIALGFVLLRDYT-------- 611 (963)
T ss_dssp HHHHHHHHHTTTSCC-----HHHHHHHHHHH------------HHCSC----HHHHHHHHHHHHHHTSSSCS--------
T ss_pred HHHHHHHHHhcCCCC-----HHHHHHHHHHh------------ccCCc----HHHHHHHHHHHHhhccCCHH--------
Confidence 000001111111110 00111111100 00011 23567788888887666653
Q ss_pred CcHHHHHHH-hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 387 KGLLCLAKL-VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 387 g~l~~L~~L-L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.++.++.+ ++++++.++..++++|..++ .+++ .+.+++.|..+..+.+ ..|+..|+.+||.
T Consensus 612 -~v~rlv~~L~~~~d~~VR~gAalALGli~---aGn~-------------~~~aid~L~~L~~D~d-~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 612 -TVPRIVQLLSKSHNAHVRCGTAFALGIAC---AGKG-------------LQSAIDVLDPLTKDPV-DFVRQAAMIALSM 673 (963)
T ss_dssp -SHHHHTTTGGGCSCHHHHHHHHHHHHHHT---SSSC-------------CHHHHHHHHHHHTCSS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHhc---cCCC-------------cHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Confidence 46666664 45788899999999998876 2332 0226676777765554 8899999999998
Q ss_pred hhcCChhh----hhccHHHHHHhcc--CCCHHHHHHHHHHHHHhcC
Q 040681 466 LARTFPAR----ETRVIGPLVAHLS--HRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 466 La~~~~~~----~~~~i~~Lv~lL~--~~~~~v~~~Aa~aL~nl~~ 505 (594)
+.....+. -..+...|.+... +.++..+.-|..|.+-+-.
T Consensus 674 Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 674 ILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 88543322 1234444555553 4567788888888877644
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.01 E-value=4.5e-05 Score=78.55 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
-.+-.+..-+++.++-.|..|+++|.++... +... ...+++.+.|.+.+ +-++..|+-+..+|.. +++.
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~-- 173 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDV-- 173 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHH--
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHH--
Confidence 3455566778889999999999999998754 3322 23566777888888 9999999999988876 4443
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
++ +.++.+-.++.+.++-|+-+|..+|..++.++.. ++..|+..+..+.... +
T Consensus 174 --v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~-~-------------- 226 (355)
T 3tjz_B 174 --VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKS-P-------------- 226 (355)
T ss_dssp --HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSC-H--------------
T ss_pred --HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcC-h--------------
Confidence 22 5788888999888999999999999999876531 3445555554431100 0
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGLLCLA 393 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~~L~ 393 (594)
..+....+.+..++.++ ++ .....++.+.
T Consensus 227 ---------------------------------------------~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~ 256 (355)
T 3tjz_B 227 ---------------------------------------------FAYCMMIRVASRQLEDEDGS-----RDSPLFDFIE 256 (355)
T ss_dssp ---------------------------------------------HHHHHHHHHHTCC----------------------
T ss_pred ---------------------------------------------HHHHHHHHHHHHhccccchh-----hHHHHHHHHH
Confidence 11222234444444333 22 1234567777
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 394 KLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 394 ~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
..|++.++.|...|+.+|..+... ....+. .++..|..++.+.+ +.++-.|++.|..++...+..
T Consensus 257 ~~L~~~~~aVvyEa~k~I~~l~~~---~~~~~~-----------~a~~~L~~fLss~d-~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 257 SCLRNKHEMVVYEAASAIVNLPGC---SAKELA-----------PAVSVLQLFCSSPK-AALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp CCCCCSSHHHHHHHHHHHTC-------------------------CCCTHHHHHHSSS-SSSHHHHHHCC----------
T ss_pred HHHcCCChHHHHHHHHHHHhccCC---CHHHHH-----------HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHCcHH
Confidence 888888899999999999887631 121111 13344555666555 899999999999999766644
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
-...-..+.+++.+.+..++.-|...|.+-
T Consensus 322 v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 322 VTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 445667788889999988888877777654
No 72
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.95 E-value=4.3e-05 Score=74.47 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=124.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cCCCHHHHHHHHHHHHHhhCC--hhHHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIAND--QERVRVIV 237 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~~~~~v~e~A~~aL~~La~~--~~~~~~iv 237 (594)
+...+++.+-..|..|+..|..+..+++.....-. ...++.|.++|. +.+ ..++..|+.+|+.|+.. +.....+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 55678889999999999999998876433210000 123667888884 777 99999999999999952 2211211
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
...+|+|+..+++.+..+|+.+..+|..++...+ . . ..++.|...|.+.+
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~----~--~ll~~l~~~l~~~~---------------------- 146 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L----E--AQQESIVESLSNKN---------------------- 146 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H----H--HHHHHHHHHTTCSC----------------------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H----H--HHHHHHHHHHcCCC----------------------
Confidence 2368999999999999999999999999987431 1 0 13445555554331
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC-Chh--hHHHHHhhCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVA--NSRRISETKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~--~~~~i~e~g~l~~L~~ 394 (594)
| .++..++..|..+... .++ ....+ ...+|.|..
T Consensus 147 -------------------------------------~----~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~ 183 (242)
T 2qk2_A 147 -------------------------------------P----SVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVK 183 (242)
T ss_dssp -------------------------------------H----HHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHH
T ss_pred -------------------------------------h----HHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHH
Confidence 1 3466777788874322 232 12222 247899999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHH
Q 040681 395 LVEKEQGELQFNCLMTIMEITAA 417 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~ 417 (594)
+|.+.+.+++..|..++..|+..
T Consensus 184 ~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 184 TLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999888733
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.94 E-value=0.00037 Score=73.63 Aligned_cols=261 Identities=16% Similarity=0.130 Sum_probs=161.5
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCC--hHHHHHhhccC---------------C-CHHHHHHHHH
Q 040681 161 YIAAIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGG--VPPLLKLLKET---------------A-SSEAQSAAAT 221 (594)
Q Consensus 161 lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~--I~~Lv~LL~~~---------------~-~~~v~e~A~~ 221 (594)
++..|.. ++.+.+.-++.+|..+.+. +++|..+.+.++ +|+++.+++.. . ...++.+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 5556655 3455566789999999987 899999987644 78887655421 0 2567889999
Q ss_pred HHHHhhCChhHHHHHHhcCCH--HHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHH-----hHHHHHHcCChhhHHHhhhc
Q 040681 222 ALYNIANDQERVRVIVSELGV--PTIVNVLSDS-IMKVQIQVASLVARMAEHDAL-----AQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 222 aL~~La~~~~~~~~iv~~g~i--~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~-----~~~~i~~~g~i~~Lv~lL~~ 293 (594)
++|.|+.+++..+.+...+.. +.|+.+++.. ..++..-+..+|.||...++. ..+.+...++ .+++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998888888877643 6777888865 788999999999999876521 1223333344 456665543
Q ss_pred CCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHH---HHHHHHH
Q 040681 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKI---ACAEALW 370 (594)
Q Consensus 294 ~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~---~a~~aL~ 370 (594)
. .++|++....+.. .--....
T Consensus 330 r--------------------------------------------------------k~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 330 R--------------------------------------------------------KYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp S--------------------------------------------------------CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred C--------------------------------------------------------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 3 3344444333221 1111122
Q ss_pred HhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc-
Q 040681 371 MLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND- 449 (594)
Q Consensus 371 ~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s- 449 (594)
.+++ -++.+.. +..|-+.- .-..+.+.--++|+-. |..+. -.++..|.++|++
T Consensus 354 ~lts-fDeY~~E-l~sG~L~W--SP~H~se~FW~ENa~k-------------------f~e~~---~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 354 ELTS-FDEYVAE-LDSKLLCW--SPPHVDNGFWSDNIDE-------------------FKKDN---YKIFRQLIELLQAK 407 (480)
T ss_dssp TCCH-HHHHHHH-HHHTCCCC--CGGGGCHHHHHHHSGG-------------------GSSGG---GHHHHHHHHHHHHH
T ss_pred hccc-HHHHHHH-HhcCCccc--CCCccchhHHHHHHHH-------------------HHhcc---hHHHHHHHHHHhhh
Confidence 2211 1221111 11222110 0000111122333311 11111 1277888999974
Q ss_pred --------CCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 450 --------LDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 450 --------~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++++.+..-||-=||.+++..|... .|+=..+.++|.+.+++|+.+|..|+.++..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2347788899999999998766432 2677888899999999999999999998864
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.84 E-value=1.5e-05 Score=69.99 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..++..|.+.++.+|..|+++|..+... .++++|+++|++++ +.++..|+++|+++..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-----------~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~--------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG--------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc---------
Confidence 45677888999999999999999988531 35899999999988 9999999999999863
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVAR 266 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~ 266 (594)
..+++.|+.+|++++..|+..|+++|.+
T Consensus 103 -~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2358999999998899999999998865
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.81 E-value=0.0002 Score=69.58 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhccCC-hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 361 LKIACAEALWMLARGS-VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
++..|+.+|..|+.+- +.....+ ...++.++..+.+.+..++..|..+|.++. ... . ...+
T Consensus 73 V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~---~~~-~------------~~~l 134 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIY---AST-S------------LEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHH---TTS-C------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HcC-C------------HHHH
Confidence 3566778888876321 1221211 236899999999889999999999998876 211 1 2347
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++.++..+++.+ +.++..++..|+.+........ ..++|.|+.+|.+.+++||..|..+|..++.
T Consensus 135 l~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 135 QESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 888899888654 9999999999999765432111 2678999999999999999999999999864
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.76 E-value=0.0018 Score=61.58 Aligned_cols=213 Identities=14% Similarity=0.127 Sum_probs=150.9
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~ 275 (594)
+.+..|+.||.+.+ +.++.++..+|..+-.. +.-+..+++ ..++.++.++++.+..+.-.|..+|..|-.+.|-..
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 35778889998888 99999999999998763 444555554 469999999999999999999999999988766555
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
..+.. .+..|.+++.++.
T Consensus 111 ~~y~K--l~~aL~dlik~~~------------------------------------------------------------ 128 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPD------------------------------------------------------------ 128 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCC------------------------------------------------------------
T ss_pred HHHHH--HHHHHHHHhcCCC------------------------------------------------------------
Confidence 56655 5667777766441
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChh
Q 040681 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPA 435 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~ 435 (594)
..+...++..+..+....+. .+.+..+..|+.+.+..+|..+..++-|++...+ ++.+
T Consensus 129 ---~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~-D~~i----------- 186 (265)
T 3b2a_A 129 ---DMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA-DSGH----------- 186 (265)
T ss_dssp ---HHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS-SCCC-----------
T ss_pred ---chHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC-CHHH-----------
Confidence 12466788888887322211 2357888899999999999999999988874432 2211
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc--------cCCCHHHHHHHHHH
Q 040681 436 AKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL--------SHRNQEVATEAAIA 499 (594)
Q Consensus 436 ~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL--------~~~~~~v~~~Aa~a 499 (594)
...+++.+-.+|++.| +.+++-|+.++-.+... +.. ..+++.+..++ -.+.+.++..|-..
T Consensus 187 ~~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~-pi~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDN-EFIVELALDVLEKALSF-PLL-ENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp GGGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTS-CCC-SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC-ccc-HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 2336666777888775 99999999999998853 222 13333333322 45677777665443
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.75 E-value=0.0018 Score=66.58 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=146.3
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~ 279 (594)
.+..++++.+.+ ...+.-.--.+.+++..++. .| =++..|.+=+.++++-+|..|.++|+++...+ .-+.
T Consensus 70 f~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSND-PTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-- 139 (355)
T ss_dssp HHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH--
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH--
Confidence 455678999988 89988888888888875322 12 25778888899999999999999999996522 2111
Q ss_pred HcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHH
Q 040681 280 RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI 359 (594)
Q Consensus 280 ~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~ 359 (594)
..+++-..|.+. + .
T Consensus 140 ---l~~~lk~~L~d~----~-----------------------------------------------------------p 153 (355)
T 3tjz_B 140 ---IERYMKQAIVDK----V-----------------------------------------------------------P 153 (355)
T ss_dssp ---HHHHHHHHHTCS----S-----------------------------------------------------------H
T ss_pred ---HHHHHHHHcCCC----C-----------------------------------------------------------H
Confidence 223333334332 1 1
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
.++..|+-+..+|...+++.. .+.+..+-.++.+.++.++.+|..+|.+|. ..+. . .
T Consensus 154 yVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~---~~d~---~------------a 210 (355)
T 3tjz_B 154 SVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVR---KNDR---L------------A 210 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH---TTCH---H------------H
T ss_pred HHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHH---hhch---H------------H
Confidence 346667777778877777743 267889999999999999999999998887 4332 1 2
Q ss_pred HHHHHHHHhcCC--ChhhHHHHHHHHHHhhcCC-hhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 440 VDQLLRVINDLD--SPTLQIPAIKSIGSLARTF-PARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 440 v~~Ll~lL~s~~--~~~v~~~a~~aL~~La~~~-~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
+..|+.-+.... ++-.+..-++.++.++... +.....+++.|...|++.++.|..||+.+|..+.. . ..
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~--~------~~ 282 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG--C------SA 282 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--C------CH
Confidence 233333333321 2444445555555555433 22234788888899999999999999999999843 1 01
Q ss_pred HHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 517 AIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 517 ~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+. ..++..|..+|.+.++ +|..||
T Consensus 283 ~~~-~~a~~~L~~fLss~d~niryvaL 308 (355)
T 3tjz_B 283 KEL-APAVSVLQLFCSSPKAALRYAAV 308 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHH
T ss_pred HHH-HHHHHHHHHHHcCCCchHHHHHH
Confidence 111 3467888888988887 888887
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.74 E-value=6.7e-05 Score=65.75 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++.|+.+|.++++.++..|+++|.++. ++ ..++.|++++++.+ +.|+..|+.+|+++.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~-----~~---------------~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~- 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ-----DE---------------RAVEPLIKLLEDDS-GFVRSGAARSLEQIG- 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC-----SH---------------HHHHHHHHHHHHCC-THHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC-----CH---------------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC-
Confidence 689999999999999999999996653 21 15677888887655 999999999999986
Q ss_pred CChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 469 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
....++.|+.+|++.++.|+..|+++|.++
T Consensus 102 -----~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 102 -----GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 346799999999999999999999998764
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.69 E-value=0.0014 Score=62.31 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=133.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc--CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEH--DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+.+..|..+|.+.+..++.++..+|.++-.. +......+ ...++.++.++.+..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~d---------------------- 88 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQEN---------------------- 88 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTT----------------------
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhccc----------------------
Confidence 3578899999999999999999999999875 22233333 347888888886551
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..+...|.++|..|-.+.|--...+. .....|..++.
T Consensus 89 -----------------------------------------Ekval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik 125 (265)
T 3b2a_A 89 -----------------------------------------EKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLE 125 (265)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTT
T ss_pred -----------------------------------------hhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhc
Confidence 12344567888887544432222222 25788888999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--h
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--T 475 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--~ 475 (594)
++++-+...++..+.-+ ..+ ++ .+.+++.+.+++.|. +..++..+++++.+++......+ .
T Consensus 126 ~~~~il~~eaae~Lgkl-kv~--------------~~-~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 126 SPDDMMRIETIDVLSKL-QPL--------------ED-SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp SCCHHHHHHHHHHHHHC-CBS--------------CC-CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred CCCchHHHHHHHHhCcC-Ccc--------------cc-hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 99999999999999654 111 11 355889999999544 49999999999999997554332 3
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++.-+-.+|++.++.+++.|..+|-++.+
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 677778889999999999999999999976
No 80
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.63 E-value=0.0029 Score=63.76 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+.+++..|++++...++.++..|..+-.++......++..+|+..|++....++ .+.+-.+++||++|-.+.+.-..+
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccch
Confidence 5777889999999999999999999955566899999999999999999999988 999999999999998888887777
Q ss_pred H-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH-------cC---ChhhHHHhhh
Q 040681 237 V-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR-------EN---VIRPLVTLLS 292 (594)
Q Consensus 237 v-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~-------~g---~i~~Lv~lL~ 292 (594)
+ ....|..+..++.+.+..|...|..+|..++.+++.+...+.+ .. -...|+.+|+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 7 4557888888999888999999999999999887654444332 11 1556667765
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00054 Score=67.17 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=120.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-hhccCchhHHHHHh-cCChHHHHHhh-ccCCCHHHHHHHHHHHHHhhCCh---hHH-H
Q 040681 162 IAAIQMGQLSDRIEAAIELAS-LAKDNDRNKKIIVE-EGGVPPLLKLL-KETASSEAQSAAATALYNIANDQ---ERV-R 234 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~-la~~~~~~~~~i~~-~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~La~~~---~~~-~ 234 (594)
-..+++.+-..|..|+..|.. ++.++++......+ ...+..|.+.| ++.+ ..++..|+.+|+.|+..- ... .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n-~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN-IQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhcccccccHH
Confidence 356789999999999999999 87654443200001 12366777788 5667 999999999999998521 111 2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC----ChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAREN----VIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g----~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
.. .-.+|+++..+++....|++.+..+|..++.+-+.. ...+ .++.|+..|.+..
T Consensus 101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~--------------- 159 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKT--------------- 159 (249)
T ss_dssp HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSS---------------
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCC---------------
Confidence 22 125899999999989999999999999988742100 0011 2334444443321
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhh-HH--HHHhhC
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVAN-SR--RISETK 387 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~-~~--~i~e~g 387 (594)
| .++..++..|..+....... .. ......
T Consensus 160 --------------------------------------------~----~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~ 191 (249)
T 2qk1_A 160 --------------------------------------------P----QIRMECTQLFNASMKEEKDGYSTLQRYLKDE 191 (249)
T ss_dssp --------------------------------------------H----HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTT
T ss_pred --------------------------------------------h----HHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 1 23566666666654322210 11 111245
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHH
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAA 417 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~ 417 (594)
.+|.|.+++.+.+.+++..|..++..++..
T Consensus 192 iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 192 VVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999877633
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.34 E-value=0.013 Score=62.01 Aligned_cols=249 Identities=14% Similarity=0.191 Sum_probs=147.4
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC--HHHHHHhhcC---------------C--CHHHHHHHHH
Q 040681 202 PLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG--VPTIVNVLSD---------------S--IMKVQIQVAS 262 (594)
Q Consensus 202 ~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~--i~~Lv~lL~~---------------~--~~~v~~~aa~ 262 (594)
.++..|....+...+.-++.+|..|...++.|..+.+.++ +|+++.+++. + ...++-.+.-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 3555565532256677899999999999999999987554 6777665441 1 3456778888
Q ss_pred HHHHHhhcCHHhHHHHHHcCCh--hhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccc
Q 040681 263 LVARMAEHDALAQDDFARENVI--RPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCS 340 (594)
Q Consensus 263 aL~~La~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~ 340 (594)
++|-|+- +++..+.+...+.. +.|+.+++...
T Consensus 251 ~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~--------------------------------------------- 284 (480)
T 1ho8_A 251 LIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITI--------------------------------------------- 284 (480)
T ss_dssp HHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred HHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhc---------------------------------------------
Confidence 9999987 44566666655532 45555554431
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh----hh-HHHHHhhCcHHHHHHHhhh---CCHHHHHHHHHHHH
Q 040681 341 SRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV----AN-SRRISETKGLLCLAKLVEK---EQGELQFNCLMTIM 412 (594)
Q Consensus 341 s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~----~~-~~~i~e~g~l~~L~~LL~~---~~~~v~~~A~~aL~ 412 (594)
|.++.+.+..+|+|+....+ .. .+.++..+++ .+++.|.. .|+++... ...|.
T Consensus 285 -----------------KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~ed-l~~L~ 345 (480)
T 1ho8_A 285 -----------------KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQD-ISNLK 345 (480)
T ss_dssp -----------------SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHH-HHHHH
T ss_pred -----------------cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHH-HHHHH
Confidence 23566778889999865432 11 2233344554 45555543 35665542 22222
Q ss_pred HHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC--------C-hhhHHHHHHHHHHhhcCChhhhhccHHHHHH
Q 040681 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD--------S-PTLQIPAIKSIGSLARTFPARETRVIGPLVA 483 (594)
Q Consensus 413 nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~--------~-~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~ 483 (594)
+.- +.+ +..-+ -.+....=+.++. + .-.++.+ ..+......++..|++
T Consensus 346 e~L---~~~-------~~~lt-----sfDeY~~El~sG~L~WSP~H~se~FW~ENa--------~kf~e~~~~llk~L~~ 402 (480)
T 1ho8_A 346 EIL---ENE-------YQELT-----SFDEYVAELDSKLLCWSPPHVDNGFWSDNI--------DEFKKDNYKIFRQLIE 402 (480)
T ss_dssp HHH---HHH-------HHTCC-----HHHHHHHHHHHTCCCCCGGGGCHHHHHHHS--------GGGSSGGGHHHHHHHH
T ss_pred HHH---HHH-------HHhcc-----cHHHHHHHHhcCCcccCCCccchhHHHHHH--------HHHHhcchHHHHHHHH
Confidence 211 100 01000 1122222222111 0 1122221 1222233367899999
Q ss_pred hccC----------CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 484 HLSH----------RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 484 lL~~----------~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+|++ .++.+..=||.=|+.++. .+++.+..+-+-||=..+++|+.+.|+ |+.+||
T Consensus 403 iL~~~~~~~~~~~s~d~~~laVAc~Digefvr----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL 468 (480)
T 1ho8_A 403 LLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 468 (480)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHH
T ss_pred HHhhhccccccccCCCcceEEeecccHHHHHH----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 9963 356777788999999987 246777766788888889999998888 999998
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0015 Score=63.94 Aligned_cols=132 Identities=7% Similarity=0.057 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhccCC--hhhH-HHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 361 LKIACAEALWMLARGS--VANS-RRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~--~~~~-~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
++..|+.+|..|+.+- +.+. .... -.+|.++..+......++..+..++..++... ++ . ... +...
T Consensus 77 v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~--~~---~---~~~-~~l~ 145 (249)
T 2qk1_A 77 AVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYY--DP---L---ASS-GRNE 145 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS--CT---T---CTT-CTTH
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--cc---c---ccC-CcHH
Confidence 3566788888876421 2222 2222 26888888888888899998888888777322 11 0 000 0023
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-------hh-hccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA-------RE-TRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~-------~~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
.+++.|+..|++.+ +.+++.++.+|+.++...+. .- ..++|.|.++|.+.+.+||..|..+|..++
T Consensus 146 ~ll~~l~~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 146 DMLKDILEHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 48889999998764 99999999999999976542 12 578999999999999999999999998875
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.06 E-value=0.012 Score=68.13 Aligned_cols=256 Identities=17% Similarity=0.181 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh---HH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE---RV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~---~~ 233 (594)
.+-+++..+...+...+..|+..|.++..++... ..+..+.+..|.+.+++.+ .. |.|+.++..|+.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCc
Confidence 3445667777766677788888888887653111 1112356777888887765 23 999999999995321 11
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
+..+ .+.+|.+...+.+....|+..|..++..+... +|+.. ...+|.|+..|.+.. + |
T Consensus 90 e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~---k---------w--- 148 (986)
T 2iw3_A 90 EPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETN---K---------W--- 148 (986)
T ss_dssp HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCC---C---------H---
T ss_pred ccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcccc---c---------h---
Confidence 2221 25788888888888889999888888887754 43222 225778887775441 0 0
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCL 392 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L 392 (594)
+.+..|...+..|+...++ +-...-...+|.+
T Consensus 149 -----------------------------------------------~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 149 -----------------------------------------------QEKIAILAAFSAMVDAAKD-QVALRMPELIPVL 180 (986)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHhHH-HHHHhccchhcch
Confidence 2356677777777643332 2222223478999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
...+.+..++++..|..++..+|.+- .|.|+ ..+++.|++.+.+.+ . .-.++..|+.+.=.
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~-~n~d~------------~~~~~~~~~~~~~p~--~----~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETV-DNKDI------------ERFIPSLIQCIADPT--E----VPETVHLLGATTFV 241 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGC-CCTTT------------GGGHHHHHHHHHCTT--H----HHHHHHHHTTCCCC
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcC-CCcch------------hhhHHHHHHHhcChh--h----hHHHHHHhhcCeeE
Confidence 99998889999999999998887544 34433 337888998887532 2 34556666653211
Q ss_pred hh------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 473 RE------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 473 ~~------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+ .=++|.|.+-|..++..++++++..+.|++.
T Consensus 242 ~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 242 AEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred eeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 11 1346777888899999999999999999875
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.031 Score=56.25 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=68.7
Q ss_pred HHHhhccCCCHHHHHHHHHHHHH-hhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH-H
Q 040681 203 LLKLLKETASSEAQSAAATALYN-IANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA-R 280 (594)
Q Consensus 203 Lv~LL~~~~~~~v~e~A~~aL~~-La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~-~ 280 (594)
++.-|.+++ .+.+..+..-|.. +..|.+-...+++.+|+..|+++...++.+.+..+..++.+|-.+. ..-..+. .
T Consensus 123 iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHC
T ss_pred HHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCC
Confidence 344455666 7778888888887 6778899999999999999999999999999999999999998753 3333333 3
Q ss_pred cCChhhHHHhhhc
Q 040681 281 ENVIRPLVTLLSF 293 (594)
Q Consensus 281 ~g~i~~Lv~lL~~ 293 (594)
...|..+..++.+
T Consensus 201 ~~fI~~lyslv~s 213 (339)
T 3dad_A 201 SDTIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcC
Confidence 3456666666653
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.49 E-value=0.18 Score=58.29 Aligned_cols=237 Identities=17% Similarity=0.190 Sum_probs=151.6
Q ss_pred HHHHHHHHHhhccCch--hHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHHHHhh
Q 040681 174 IEAAIELASLAKDNDR--NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN--DQERVRVIVSELGVPTIVNVL 249 (594)
Q Consensus 174 ~~Aa~~L~~la~~~~~--~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~Lv~lL 249 (594)
..|+..+..++..... -...+ =.+.+|.++..+.+.. ..++..|..++..+.. .++.... .+|.|+..|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a~~~-----~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVAIKA-----LLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGGHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHh
Confidence 7788888888854321 11111 1256788888887777 8899988888888765 4444433 489999999
Q ss_pred cCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhccccccc
Q 040681 250 SDS-IMKVQIQVASLVARMAEHDALAQDDFAR--ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVG 326 (594)
Q Consensus 250 ~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~ 326 (594)
.+. ....+..|..++..|+...+ ..+.. ...||.+-+.+-+.
T Consensus 143 ~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-------------------------------- 187 (986)
T 2iw3_A 143 VETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-------------------------------- 187 (986)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS--------------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC--------------------------------
Confidence 766 68899999999999987543 33332 12333333332111
Q ss_pred CCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc--CChhhHHHHHhhCcHHHHHHHhhhCCHHHH
Q 040681 327 SKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR--GSVANSRRISETKGLLCLAKLVEKEQGELQ 404 (594)
Q Consensus 327 ~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~--~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~ 404 (594)
|.+++..|..++-.+|. +|.++. ..+|.|++.+.+++ ++.
T Consensus 188 -------------------------------k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p~-~~~ 229 (986)
T 2iw3_A 188 -------------------------------KKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADPT-EVP 229 (986)
T ss_dssp -------------------------------SHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCTT-HHH
T ss_pred -------------------------------cHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcChh-hhH
Confidence 23456667777777663 455532 36899999998774 344
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh--ccHHHHH
Q 040681 405 FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET--RVIGPLV 482 (594)
Q Consensus 405 ~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~--~~i~~Lv 482 (594)
+ |...|+.-|.+++ .++|...-+++.|.+-|.... ..++..++-.+.|+|.-.+.... -++|.|+
T Consensus 230 ~-~~~~l~~~tfv~~-----------v~~~~l~~~~p~l~r~l~~~~-~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~ 296 (986)
T 2iw3_A 230 E-TVHLLGATTFVAE-----------VTPATLSIMVPLLSRGLNERE-TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLL 296 (986)
T ss_dssp H-HHHHHTTCCCCSC-----------CCHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTH
T ss_pred H-HHHHhhcCeeEee-----------ecchhHHHHHHHHHhhhccCc-chhheeeEEEEcchhhhcCCHHHHhhhhhhhh
Confidence 3 4555543332222 223444457888888887554 88889999999999975443332 4555555
Q ss_pred Hhc-----cCCCHHHHHHHHHHHHHh
Q 040681 483 AHL-----SHRNQEVATEAAIALQKF 503 (594)
Q Consensus 483 ~lL-----~~~~~~v~~~Aa~aL~nl 503 (594)
.-| .-.+|++|.-|..|+..+
T Consensus 297 p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 297 PGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 444 346888888887777766
No 87
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.41 E-value=0.0066 Score=59.11 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=42.6
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVP 243 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~ 243 (594)
++.+.++++|..|+..| ....|..++++++ +.++..++..| . .+
T Consensus 58 ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~-~~VR~~aA~~L---~--------------~~ 101 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS------------------PVEALTPLIRDSD-EVVRRAVAYRL---P--------------RE 101 (244)
T ss_dssp GTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSS-HHHHHHHHTTS---C--------------SG
T ss_pred HhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcC-HHHHHHHHHHC---C--------------HH
Confidence 45778888888888753 1233566777777 88888777642 1 13
Q ss_pred HHHHhhcCCCHHHHHHHHH
Q 040681 244 TIVNVLSDSIMKVQIQVAS 262 (594)
Q Consensus 244 ~Lv~lL~~~~~~v~~~aa~ 262 (594)
.|..++++++..||..++.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 5666777777888877776
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.84 E-value=3.6 Score=47.77 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc-----CCChhhHHHHHHHHHHhhcCChhhh--
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND-----LDSPTLQIPAIKSIGSLARTFPARE-- 474 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s-----~~~~~v~~~a~~aL~~La~~~~~~~-- 474 (594)
..+..|..+|..++.. .. +. + .+.+++.+...+.. +.++..++.|+.+++.++.......
T Consensus 376 s~R~aa~~~L~~l~~~---~~---~~-v------~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~ 442 (960)
T 1wa5_C 376 TRRRACTDFLKELKEK---NE---VL-V------TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG 442 (960)
T ss_dssp CHHHHHHHHHHHHHHH---CH---HH-H------HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB
T ss_pred CcHHHHHHHHHHHHHH---cc---hh-H------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC
Confidence 5677777778766622 21 10 1 12244444444542 2347889999999999985431111
Q ss_pred -h------ccHHHHH----HhccCC---CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhH
Q 040681 475 -T------RVIGPLV----AHLSHR---NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQL 539 (594)
Q Consensus 475 -~------~~i~~Lv----~lL~~~---~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~ 539 (594)
. .+.+.++ ..|.+. ++-++..|+|+|+.++.. +++++-. ..++.+++.|...+. ||.
T Consensus 443 ~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~~~l~-----~~l~~l~~~L~d~~~~V~~ 514 (960)
T 1wa5_C 443 VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ---LTKAQLI-----ELMPILATFLQTDEYVVYT 514 (960)
T ss_dssp CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCHHHHH-----HHHHHHHHHTTCSCHHHHH
T ss_pred cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh---CCHHHHH-----HHHHHHHHHhCCCChhHHH
Confidence 1 3333333 334555 889999999999999751 2233222 245677777776655 777
Q ss_pred hHH
Q 040681 540 HGL 542 (594)
Q Consensus 540 ~Al 542 (594)
.|.
T Consensus 515 ~A~ 517 (960)
T 1wa5_C 515 YAA 517 (960)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.03 E-value=0.77 Score=53.44 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh---c--cCCCHHHHHHHHHHHHHhhCC-hhHHHHHHhcCC
Q 040681 168 GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL---K--ETASSEAQSAAATALYNIAND-QERVRVIVSELG 241 (594)
Q Consensus 168 ~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL---~--~~~~~~v~e~A~~aL~~La~~-~~~~~~iv~~g~ 241 (594)
.+-..+..|+.+++.++.+-.... ...++.++.++ . +++ +.++..++++|+.++.. ..+...+ ...
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~-~~vr~~a~~~l~~~~~~l~~~~~~l--~~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLN-VKLLGTALETMGSYCNWLMENPAYI--PPA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSC-HHHHHHHHHHHHHTHHHHC----CH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccC-HHHHHHHHHHHHHHHHHHhcCHHHH--HHH
Confidence 344577778888998886533221 13345455443 2 235 99999999999999862 1111111 124
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
++.|+..|. +.++..|++++.+++..
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRD 573 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHH
Confidence 666777772 78999999999999963
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.96 E-value=1.7 Score=50.51 Aligned_cols=250 Identities=12% Similarity=0.100 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc------cCCCHHHHHHHHHHHHHhhCChhHHHHHHhc-----C
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK------ETASSEAQSAAATALYNIANDQERVRVIVSE-----L 240 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~------~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~-----g 240 (594)
.|..|...|..++.... +.+.. -.++.+-+.|. +.+ ...++.|..+++.++........-... .
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~-w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKN-WKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----C-HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchh-HHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 45566677777775422 22211 11222333344 334 678899999999997421100000000 1
Q ss_pred CHHH----HHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 241 GVPT----IVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 241 ~i~~----Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
..+. ++..|.++ .+-+|..++|+|+.++..- ....+. ..++.++..|.+. +
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~--~~l~~l~~~L~d~----~-------------- 509 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLI--ELMPILATFLQTD----E-------------- 509 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHH--HHHHHHHHHTTCS----C--------------
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHH--HHHHHHHHHhCCC----C--------------
Confidence 1122 22234555 8899999999999998742 122222 2466666666432 1
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-------hhh-HHHHH-
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-------VAN-SRRIS- 384 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-------~~~-~~~i~- 384 (594)
..++..|+.||.+++... ++. +..+.
T Consensus 510 ---------------------------------------------~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 510 ---------------------------------------------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 134778999999987521 111 11121
Q ss_pred -hhCcHHHHHHHhhhCC---HH--HHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc----CCChh
Q 040681 385 -ETKGLLCLAKLVEKEQ---GE--LQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND----LDSPT 454 (594)
Q Consensus 385 -e~g~l~~L~~LL~~~~---~~--v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s----~~~~~ 454 (594)
-...+..|..++.... .. ....+..+|+.+...... .+. |....+++.|...+.. .++..
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-------~~~---p~~~~l~~~L~~~l~~~~~~~~~~~ 614 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-------SIQ---PLFPQLLAQFIEIVTIMAKNPSNPR 614 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-------TTG---GGHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-------hhh---hHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 1335667777777641 11 224556666665533221 122 2344566666666653 33356
Q ss_pred hHHHHHHHHHHhhcCC-hhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 455 LQIPAIKSIGSLARTF-PAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 455 v~~~a~~aL~~La~~~-~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
....++.+|+.+++.. +.. ...++|.+...|.....+....+...+..+
T Consensus 615 ~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 615 FTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 6677889999988762 211 125678888888665555555555554444
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.77 E-value=3.4 Score=40.21 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhccCchhH--H-HHHhcCC-hHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hh----H
Q 040681 163 AAIQMGQLSDRIEAAIELASLAKDNDRNK--K-IIVEEGG-VPPLLKLLKETASSEAQSAAATALYNIAND--QE----R 232 (594)
Q Consensus 163 ~~L~~~~~~~~~~Aa~~L~~la~~~~~~~--~-~i~~~g~-I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~----~ 232 (594)
.+|.+.+=..|.+|...|..+....+... . .+...+. ++.+-+.+++.+ ..++..++.+|..++.. .. .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 57888888899999999988765432211 1 1111233 445556888888 99999999999988742 11 1
Q ss_pred HHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhc
Q 040681 233 VRVIVSELGVPTIVN-VLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~-lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
.....-...+|.|+. .|.+....++..+..++..++..
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 112222345777775 57888899999998888877653
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.33 E-value=2.9 Score=48.50 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL---S--DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL---~--~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~L 287 (594)
...++.++.+++.++....... ...++.++.++ . +.++.++..++|+|+.++..-......+. .+++.|
T Consensus 478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l 551 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLL 551 (971)
T ss_dssp CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHH
Confidence 6789999999999987322111 12334444333 2 34889999999999999853111111111 123333
Q ss_pred HHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHH
Q 040681 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAE 367 (594)
Q Consensus 288 v~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~ 367 (594)
+..|. . .++..|+.
T Consensus 552 ~~~l~-~-----------------------------------------------------------------~v~~~A~~ 565 (971)
T 2x1g_F 552 VRGLN-S-----------------------------------------------------------------SMSAQATL 565 (971)
T ss_dssp HHHHH-S-----------------------------------------------------------------SCHHHHHH
T ss_pred HHHhC-h-----------------------------------------------------------------HHHHHHHH
Confidence 33331 1 12567888
Q ss_pred HHHHhccCChhhHHHHH--hhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH
Q 040681 368 ALWMLARGSVANSRRIS--ETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL 443 (594)
Q Consensus 368 aL~~L~~~~~~~~~~i~--e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L 443 (594)
|+.+++... +..+. -...+..|..++.++ +.+.+.....+++.+..... ..+... ....+++.+
T Consensus 566 al~~l~~~~---~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~--------~~~~ll~~l 633 (971)
T 2x1g_F 566 GLKELCRDC---QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPK--------YLDIIVSPC 633 (971)
T ss_dssp HHHHHHHHC---HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHH---HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHH--------HHHHHHHHH
Confidence 999987422 22222 123456666777763 46778888888887763221 111111 112244444
Q ss_pred HH----HHhcCC-ChhhHHHHHHHHHHhhcCChh--------------------hhhccHHHHHHhcc--CCCHHHHHHH
Q 040681 444 LR----VINDLD-SPTLQIPAIKSIGSLARTFPA--------------------RETRVIGPLVAHLS--HRNQEVATEA 496 (594)
Q Consensus 444 l~----lL~s~~-~~~v~~~a~~aL~~La~~~~~--------------------~~~~~i~~Lv~lL~--~~~~~v~~~A 496 (594)
+. ++.... +++.+.....++..|+..... ....+++.+..++. ..+.++.+.+
T Consensus 634 ~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~ 713 (971)
T 2x1g_F 634 FEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAA 713 (971)
T ss_dssp HHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 43 333321 232333344444444321110 01246677777764 3477999999
Q ss_pred HHHHHHhcC
Q 040681 497 AIALQKFAS 505 (594)
Q Consensus 497 a~aL~nl~~ 505 (594)
++++.+++.
T Consensus 714 ~~~~~~~~~ 722 (971)
T 2x1g_F 714 CSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.92 E-value=5 Score=46.39 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=64.0
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh---ccCCCHHHHHHHHHHHHHhhCC-hhHHHHHHhcCCH
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL---KETASSEAQSAAATALYNIAND-QERVRVIVSELGV 242 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL---~~~~~~~v~e~A~~aL~~La~~-~~~~~~iv~~g~i 242 (594)
..+...+..|+.+++.++.+-.... ...++.++..| .+++ +.++..++++++.++.. .++. ... ...+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 3455667778888888886533211 12234444433 2334 88999999999999863 2222 222 4688
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 243 PTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 243 ~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
+.|+..|.+ +.|+..|+++|.++|..
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 999988865 78999999999999963
No 94
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.43 E-value=9.8 Score=38.15 Aligned_cols=203 Identities=11% Similarity=0.109 Sum_probs=141.6
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+...+.+..|+..|..=+-+.|..++.+..++-.... |.=.+.|+.+.... + -+..++.
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~---------~~~~p~v~Yl~~~p---e--------il~~L~~ 132 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQI---------GTRTPTVEYICTQQ---N--------ILFMLLK 132 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCB---------TTBCHHHHHHHTCT---H--------HHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhccc---------CCCCchhHHHHcCH---H--------HHHHHHH
Confidence 44557889999999998899999999999999876442 23334444443321 0 1111221
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+ +++|+ .+.-++.+..-|..++..++.+...+.+-.+.+
T Consensus 133 g------------------------------------Ye~~d-----iAl~~G~mLRecir~e~la~~iL~~~~f~~fF~ 171 (341)
T 1upk_A 133 G------------------------------------YESPE-----IALNCGIMLRECIRHEPLAKIILWSEQFYDFFR 171 (341)
T ss_dssp G------------------------------------GGSTT-----THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHH
T ss_pred h------------------------------------hccch-----hHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 1 11111 112234443434467888999999889999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
.++.++=++-..|..++..|- ..+..+.. .|..++ ...+....-++|.+.+ .-.+..+++.||.|-.+..+..
T Consensus 172 yv~~~~FdiasDAf~TfkelL---t~Hk~lva-efL~~n--yd~Ff~~y~~Ll~S~N-YVTkRQSlKLLgelLldr~N~~ 244 (341)
T 1upk_A 172 YVEMSTFDIASDAFATFKDLL---TRHKLLSA-EFLEQH--YDRFFSEYEKLLHSEN-YVTKRQSLKLLGELLLDRHNFT 244 (341)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH---HSSHHHHH-HHHHHT--HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHSGGGHH
T ss_pred HhcCCCchHHHHHHHHHHHHH---hccHHHHH-HHHHHh--HHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHhCchHHH
Confidence 999999899888888888774 45555555 366544 4568888899888766 8889999999999986543322
Q ss_pred h--------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 475 T--------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 ~--------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
. .-+..+..+|.+.+..+|.+|-...-=|++
T Consensus 245 vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 245 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 1 346788889999999999999998887876
No 95
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.34 E-value=8.3 Score=37.12 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccch
Q 040681 257 QIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYS 336 (594)
Q Consensus 257 ~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~ 336 (594)
..+|...|..+|+ +|+.|..|.+++..--|--.|+..+ ..
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~s---k~------------------------------------ 112 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVS---KT------------------------------------ 112 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCC---CS------------------------------------
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhcccc---CC------------------------------------
Confidence 3566677788888 5589999999887666666666552 11
Q ss_pred hccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 337 EYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 337 ~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
|.+ ..++-.+.++++.|.. +++++...+.+...+|..++.++.|++-.|.-|...+..|-
T Consensus 113 -------------r~f------E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 113 -------------RPF------EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp -------------HHH------HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred -------------Ccc------hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 000 2456667777777764 45777788888999999999999999999998988888765
Q ss_pred HHhcCCHHHHHHhhhcCCh----hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 416 AAAESNADLRRAAFKTNSP----AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 416 ~~~~~~~~~r~~~~~~~~~----~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
..+..+.- ....+ ++..++..++.-+...+++.+....+++--.|+.+..+++
T Consensus 174 ---~dd~GL~Y---iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~ 230 (268)
T 2fv2_A 174 ---LDDTGLAY---ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE 230 (268)
T ss_dssp ---HSHHHHHH---HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred ---ccchhHHH---HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 22222111 11111 1233555566666666678888999999999986655443
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.60 E-value=0.8 Score=44.76 Aligned_cols=99 Identities=7% Similarity=0.049 Sum_probs=75.9
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+|.|+.-+.+..+.++..+-.++..++.+. .+ ..+.+.++.-+++.+ +.+++.|+..++++-
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~--~~--------------~~v~~~l~~g~ksKN-~R~R~e~l~~l~~li 195 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV--GP--------------LKMTPMLLDALKSKN-ARQRSECLLVIEYYI 195 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--CH--------------HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--CH--------------HHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 5788888887778889888877776665332 11 236777888887665 999999999999988
Q ss_pred cCChhhhhccH---HHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 468 RTFPARETRVI---GPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 468 ~~~~~~~~~~i---~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..+.......+ +.+.+++.+.+..|+..|..++..+
T Consensus 196 ~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 196 TNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 64433344678 9999999999999999998887654
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.59 E-value=6.2 Score=45.56 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL---SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVT 289 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL---~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~ 289 (594)
...++.++++++.++...... ....++.++..+ .++++.++..++|+++.++..-......+ ...++.|+.
T Consensus 463 w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~ 536 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLH 536 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHH
Confidence 788999999999998631110 011233344333 33578899999999999986311111222 235555555
Q ss_pred hhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHH
Q 040681 290 LLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEAL 369 (594)
Q Consensus 290 lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL 369 (594)
.|.+. .++..|+.+|
T Consensus 537 ~l~~~-----------------------------------------------------------------~V~~~A~~al 551 (963)
T 2x19_B 537 ALGNP-----------------------------------------------------------------ELSVSSVSTL 551 (963)
T ss_dssp HTTCG-----------------------------------------------------------------GGHHHHHHHH
T ss_pred HhCCc-----------------------------------------------------------------hHHHHHHHHH
Confidence 55321 1356788889
Q ss_pred HHhccCChhhHHHHH--hhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHH
Q 040681 370 WMLARGSVANSRRIS--ETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLR 445 (594)
Q Consensus 370 ~~L~~~~~~~~~~i~--e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~ 445 (594)
.+++... ...+. -...+..|..++..+ +.+.+.....+++.+.... .++-+. +....+++.+..
T Consensus 552 ~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~--~~~~~~-------~~~~~l~~~l~~ 619 (963)
T 2x19_B 552 KKICREC---KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL--QVEEIL-------KNLHSLISPYIQ 619 (963)
T ss_dssp HHHHHHT---GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS--CHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC--CHHHHH-------HHHHHHHHHHHH
Confidence 9887421 11121 122445555666653 4567777778887765221 111111 112335555554
Q ss_pred HHh----cCCChhhHH---HHHHHHHHhhcCChh--------------------------hhhccHHHHHHhcc--CCCH
Q 040681 446 VIN----DLDSPTLQI---PAIKSIGSLARTFPA--------------------------RETRVIGPLVAHLS--HRNQ 490 (594)
Q Consensus 446 lL~----s~~~~~v~~---~a~~aL~~La~~~~~--------------------------~~~~~i~~Lv~lL~--~~~~ 490 (594)
.+. ...+++.+. ....+|+.+.+.... ....+++.+.++|. ..+.
T Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 699 (963)
T 2x19_B 620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDA 699 (963)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCch
Confidence 443 222343333 344445444432210 00134555555552 4567
Q ss_pred HHHHHHHHHHHHhc
Q 040681 491 EVATEAAIALQKFA 504 (594)
Q Consensus 491 ~v~~~Aa~aL~nl~ 504 (594)
++.+.++.++..++
T Consensus 700 ~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 700 QVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988864
No 98
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.37 E-value=13 Score=37.29 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=133.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHH----HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKK----IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~----~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
+..++..|..=+-+.|.+++....++.+.....+- .+.. --..|.-|++..+++++-..+-..|+.+..++...
T Consensus 80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 44466677777889999999888888776443222 2221 23333334444333667777888899999998888
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCC---hhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENV---IRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
..|...+.+..+.+....++-++-..|..++..|-..+......+...+- ....-+||.+++
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N--------------- 222 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN--------------- 222 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS---------------
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc---------------
Confidence 88888888888999999999999999999999886655433223322221 223333443331
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhh----HHHHHhh
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVAN----SRRISET 386 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~----~~~i~e~ 386 (594)
-..++.+...|+.+-. +..+ .+.+.+.
T Consensus 223 ------------------------------------------------YVTkRQSlKLLgelLl-dr~N~~vM~~Yis~~ 253 (341)
T 1upk_A 223 ------------------------------------------------YVTKRQSLKLLGELLL-DRHNFTIMTKYISKP 253 (341)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCH
T ss_pred ------------------------------------------------chhHHHHHHHHHHHHh-CchHHHHHHHHhCCH
Confidence 1235666777777632 3333 2334455
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
.-+..++.||++....+|..|-...--..+-....+.+.+
T Consensus 254 ~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~ 293 (341)
T 1upk_A 254 ENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 293 (341)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHH
Confidence 6789999999999999999998887665555555555555
No 99
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.31 E-value=4.5 Score=47.55 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP 434 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~ 434 (594)
+..+.+||+|+ |.+. .++.|.+++.. ....++..|+++|..+. ...+..
T Consensus 457 ~~~~LkaLGN~--g~p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~---~~~p~~---------- 512 (1056)
T 1lsh_A 457 IVLALKALGNA--GQPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---KRDPRK---------- 512 (1056)
T ss_dssp HHHHHHHHHHH--TCGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---GTCHHH----------
T ss_pred HHHHHHHhhcc--CChh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhh---hhchHH----------
Confidence 45678999998 6665 57788887752 12467888999997765 444421
Q ss_pred hhHHHHHHHHHHHhc-CCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCCc
Q 040681 435 AAKAVVDQLLRVIND-LDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS-HRNQEVATEAAIALQKFASPENF 509 (594)
Q Consensus 435 ~~~~~v~~Ll~lL~s-~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~~~~ 509 (594)
+-+.++.+..+ ..++++|..|+..|..-. + ....+..+...|. +.+.+|..-....|.+++...+|
T Consensus 513 ----v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P--~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 513 ----VQEIVLPIFLNVAIKSELRIRSCIVFFESK---P--SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp ----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---C--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred ----HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---c--CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 33445666643 233888988888775432 1 2356777777774 47888888888888888875553
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.20 E-value=3.8 Score=39.83 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=68.5
Q ss_pred CcHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 387 KGLLCLAK-LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 387 g~l~~L~~-LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
..++.|+. .|.+....++..+..++..++...... ..+++.++..+.+.+ +.++..++..|..
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---------------~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~ 165 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---------------TQSVELVIPFFEKKL-PKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---------------HHHHHHHGGGGGCSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhccC-HHHHHHHHHHHHH
Confidence 34566654 356667788888888886655222111 225566666666544 8999999999988
Q ss_pred hhcCChhhh---h----ccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 466 LARTFPARE---T----RVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 466 La~~~~~~~---~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+-..+.... . .+++.+..+|.+.++.||.+|..++..+-
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 876432211 1 24567778889999999999999887763
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.17 E-value=0.91 Score=44.34 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC-hHHHHHhhccCCCHHHHHHHHHHHHHhhC---ChhHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG-VPPLLKLLKETASSEAQSAAATALYNIAN---DQERVRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~-I~~Lv~LL~~~~~~~v~e~A~~aL~~La~---~~~~~~~i 236 (594)
+...|.+.|...+..|+..|......+++ ..+...+. ++.+.--+.+.+ ..+...+..+|..+.. +.+.+-.-
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccccchH
Confidence 55677788888899999998877654332 12211122 222221233556 8888888888777632 11111000
Q ss_pred Hh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 237 VS-ELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 237 v~-~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
.+ .-.+|.|+.=++++...+|+.+-.++..|+.
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 00 1258999999999999999999998888765
No 102
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.82 E-value=15 Score=42.72 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhhcCChhhhhcc
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND----LDSPTLQIPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s----~~~~~v~~~a~~aL~~La~~~~~~~~~~ 477 (594)
...+.++.+|..++ ++-..... .+...++..+.+++.|..++.+ .+.+.|+..++.+++..+.-+.. ....
T Consensus 458 ~~~EaaL~~l~~ia---E~i~~~~~-~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~ 532 (980)
T 3ibv_A 458 QLIEFALYETYIFG---EGLRGPDA-FFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAA 532 (980)
T ss_dssp HHHHHHHHHHHHTT---TTCCSGGG-TBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTT
T ss_pred HHHHHHHHHHHHHH---hhcccccc-ccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-Cchh
Confidence 44567777776655 43211001 0011122334577777777652 22378999999999999965442 2345
Q ss_pred HHHHHHhc------cCCCHHHHHHHHHHHHHhcC
Q 040681 478 IGPLVAHL------SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 478 i~~Lv~lL------~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+++++..+ .+.+..|+..|+.++.+|+.
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 55555544 45678899999999999965
No 103
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=89.04 E-value=19 Score=35.66 Aligned_cols=98 Identities=4% Similarity=0.085 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhh--CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISET--KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~--g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
+-.+++++.|+.. ++..++.+... .++..+...+.+.+..++..++..+.|++.......+. .....+
T Consensus 165 ~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~---------~~~~~l 234 (304)
T 3ebb_A 165 QLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI---------EGKAQC 234 (304)
T ss_dssp HHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH---------HHHHHH
T ss_pred HHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc---------hHHHHH
Confidence 4457899999974 55556655532 24455555555567899999999999998543221111 012235
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcC
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLART 469 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~ 469 (594)
+..+..++....+.+..-.++-+||+|...
T Consensus 235 l~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 235 LSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 566667776666688899999999999954
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.09 E-value=5 Score=47.03 Aligned_cols=132 Identities=8% Similarity=0.024 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-----CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-----EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
.+.++.|++.++.+-.+....-.-..+++.|+.+++. ...-++..++|+|...+.....+++. .
T Consensus 470 ~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-----------L 538 (1023)
T 4hat_C 470 INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-----------L 538 (1023)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-----------H
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-----------H
Confidence 5667888888764433221212223467788888764 12234556789997766444444422 2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--------hccHHHHHH----hccCCCHHHHHHHHHHHHHhc
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--------TRVIGPLVA----HLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--------~~~i~~Lv~----lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+.++..|+..+.... +.++..|+.++.+||..-...- ...++.++. ....-+..-...+..+++.++
T Consensus 539 ~~vl~~L~~~l~~~~-~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 539 RTVILKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 336777777664333 7899999999999996422111 113454444 334456666777888888887
Q ss_pred C
Q 040681 505 S 505 (594)
Q Consensus 505 ~ 505 (594)
.
T Consensus 618 ~ 618 (1023)
T 4hat_C 618 S 618 (1023)
T ss_dssp T
T ss_pred H
Confidence 6
No 105
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.18 E-value=46 Score=38.95 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=68.3
Q ss_pred cHHHHHHHhhh----CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 388 GLLCLAKLVEK----EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 388 ~l~~L~~LL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
.+..+..|+++ .++.++..+..++..|..-...+.. . ......+.+.+.|...+.+.+ ..-+..++++|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~-----~-c~~~~v~~i~~~l~~~~~~~~-~~~~~~~LkaL 464 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV-----S-CPDELLQPLHDLLSQSSDRAK-EEEIVLALKAL 464 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS-----S-CCGGGTHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC-----C-CCHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHh
Confidence 45666666654 3456777777777666522211100 0 011123456677777777665 67778999999
Q ss_pred HHhhcCChhhhhccHHHHHHhcc-------CCCHHHHHHHHHHHHHhcC
Q 040681 464 GSLARTFPARETRVIGPLVAHLS-------HRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 464 ~~La~~~~~~~~~~i~~Lv~lL~-------~~~~~v~~~Aa~aL~nl~~ 505 (594)
||+.. ...++.|.+++. +....++.+|++||.++++
T Consensus 465 GN~g~------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 465 GNAGQ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHTC------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred hccCC------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 99973 356888888873 2356799999999999987
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=84.53 E-value=3.9 Score=43.99 Aligned_cols=103 Identities=9% Similarity=0.107 Sum_probs=70.6
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-hhhHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS-PTLQIPAIKSIG 464 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~-~~v~~~a~~aL~ 464 (594)
.++++.++..|.+.+++|+.-|+.+|.-++ ... ....++..+-..|.+.++ ....-.....|.
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p~------------~l~~LL~iLWd~L~~LDDLSASTgSVMdLLA 361 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP----ITD------------SLDLVLEKCWKNIESEELISVSKTSNLSLLT 361 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----CSS------------THHHHHHHHHHHHHTCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhc----chh------------hHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 456788888889899999999999996554 111 123366677777766554 223344555666
Q ss_pred HhhcCChh--hhhccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 465 SLARTFPA--RETRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 465 ~La~~~~~--~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
.|+..... .....+|.|...|.+.-..||..+..+|..|.
T Consensus 362 kL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 362 KIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 66643321 11267888889999999999999999888775
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.12 E-value=2.2 Score=50.05 Aligned_cols=106 Identities=8% Similarity=0.022 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE-----TASSEAQSAAATALYNIANDQERVRVIVSELGVP 243 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~ 243 (594)
+=..+..++++++.++..-......-.=...++.|+.++.. +. ..++..++|+||..+.--....... ...+.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 45566777899999986533321211123567888888864 22 4455567799998775211111111 12345
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 040681 244 TIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 244 ~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~ 279 (594)
.|+..+.+.++.+++.|++++.+||. .|+..+.
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~ 576 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFV 576 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 55666666678999999999999997 5666664
No 108
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.97 E-value=16 Score=36.15 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChH----HHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc--CCHHHH
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVP----PLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE--LGVPTI 245 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~----~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~--g~i~~L 245 (594)
.+.-++.-|+-++.+ +.....+.+.+.-. .++..+.+...+..+.-++++++|+-.++..+..+... ..++.+
T Consensus 118 ~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 118 IVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 344444444444433 44333333332222 23344443333777899999999999988888877742 244555
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
...+.+.+..++..++..+.|++..
T Consensus 197 ~~~~~~~nknl~iA~ATl~~NlAv~ 221 (304)
T 3ebb_A 197 IELKSGSNKNIHIALATLALNYSVC 221 (304)
T ss_dssp HGGGSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHH
Confidence 5555566889999999999999874
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.27 E-value=21 Score=33.98 Aligned_cols=131 Identities=9% Similarity=0.052 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAK-LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~-LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
.++..|+..|..+ .... ..++.+.. +-....=.|++.++.++.+++... ++ ..
T Consensus 86 eVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~--~p--------------e~ 139 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI--EY--------------KK 139 (240)
T ss_dssp HHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH--CT--------------TT
T ss_pred HHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc--CH--------------HH
Confidence 4566777777766 3111 14555555 334455689999999998877311 11 01
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcC--ChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLART--FPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~--~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
.++.+.....+.+ ..++..|+..+.--+.. +...-..+++.|-.+..+.+..||+..+++|..++- .+ ++-..
T Consensus 140 ~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK-~~---Pd~V~ 214 (240)
T 3l9t_A 140 ALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK-KF---PDLVK 214 (240)
T ss_dssp THHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT-TC---HHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-hC---HHHHH
Confidence 3455666666555 88998888776433321 111112456777777789999999999999999976 44 46666
Q ss_pred HHHHc
Q 040681 517 AIIEF 521 (594)
Q Consensus 517 ~i~~~ 521 (594)
.+++.
T Consensus 215 ~~~~~ 219 (240)
T 3l9t_A 215 IELKN 219 (240)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65543
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.22 E-value=9.8 Score=40.05 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=77.4
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHH
Q 040681 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPT 244 (594)
Q Consensus 165 L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~ 244 (594)
...|+...|.-|+.-|....+.-|.... .+|..++.|..+.+ ..++.+|...|..+|.+ +....+ ...
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~-~~i~ki-----aDv 104 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDED-VSIRRQAIKELPQFATG-ENLPRV-----ADI 104 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT-TCHHHH-----HHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh-hhhhhH-----HHH
Confidence 3567899999999999888887777644 46788999999988 99999999999999998 665555 457
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 245 IVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 245 Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
|+++|...++.-...+-++|..|-..++
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dp 132 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDA 132 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcCh
Confidence 8999998877777777777777766665
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=80.99 E-value=5.5 Score=38.35 Aligned_cols=99 Identities=9% Similarity=0.097 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHH
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIAN--DQERVRVIVSELGVPTI 245 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~L 245 (594)
-...|+.-|..+|.+ ++.|..+++++..-.|-.+|...+ .+.++..+.++++.|.. |++....+.+.+.+|..
T Consensus 72 RVcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 345677777888875 899999999988777777776543 14678889999999986 55667777789999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
++.++.|+.-.+..|+.++.++-.++
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999997643
No 112
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=80.94 E-value=20 Score=41.76 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhccCchhHHHHH-hcCCh----HHHHHhhc-----cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIV-EEGGV----PPLLKLLK-----ETASSEAQSAAATALYNIANDQERVRVIVSELG 241 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I----~~Lv~LL~-----~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~ 241 (594)
....|+.+|..++..-..+...+. +...+ +.|..+++ .+. +.++..+.++++..+..-.. +...
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h-p~V~~~~~~~l~rys~~~~~-----~~~~ 532 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH-PLVQLLYMEILVRYASFFDY-----ESAA 532 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC-HHHHHHHHHHHHHTGGGGGT-----CCTT
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhc-----Cchh
Confidence 344456677766654222111110 11233 34444544 344 99999999999998863221 2345
Q ss_pred HHHHHHhhcC------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh
Q 040681 242 VPTIVNVLSD------SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292 (594)
Q Consensus 242 i~~Lv~lL~~------~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~ 292 (594)
+++++..+-+ ++..|+..|+.++.++|.. ++..+ .+-++.++..+.
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~---~~~~L--~~~~~~il~~l~ 584 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS---IKKQV--VNYTESSLAMLG 584 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH---TTTTC--SSSHHHHHHHTT
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH---hhHHh--hhHHHHHHHHHH
Confidence 6666665544 4678999999999999973 44333 234555555543
No 113
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=77.48 E-value=11 Score=35.86 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=74.7
Q ss_pred HHHHHhcCCHH-HHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccC----C------CHHHHHHHHHHHHHhhC
Q 040681 161 YIAAIQMGQLS-DRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKET----A------SSEAQSAAATALYNIAN 228 (594)
Q Consensus 161 lv~~L~~~~~~-~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~----~------~~~v~e~A~~aL~~La~ 228 (594)
+|..|+++... .-.+-+..|+-..+.++ ...+.+ ..+|+..|+.+|..- . +...+..++.+|..|..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 34555544211 11223344443333333 333445 578888888887531 1 25678889999999988
Q ss_pred ChhHHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 229 DQERVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 229 ~~~~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.......+. ..+++..|+..|.++++.++..+...|..+|..+
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 888777777 4668999999999889999999999999998754
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=76.76 E-value=9.5 Score=40.14 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
+.|..|+.-|.......|+.. ..++.+++.|.++++..++..|...|-.+| .. .. ...+
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~c---k~-~~------------i~ki 101 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFA---TG-EN------------LPRV 101 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGC---CT-TC------------HHHH
T ss_pred HHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHh---hh-hh------------hhhH
Confidence 457788888888877777744 447899999999999999999988887776 22 11 2348
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHH
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQK 502 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~n 502 (594)
++.|.++|...+ ..-....-.+|..|-...+ .+.+..|...+..++..+|..+..-|..
T Consensus 102 aDvL~QlLqtdd-~~E~~~V~~sL~sllk~Dp---k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 ADILTQLLQTDD-SAEFNLVNNALLSIFKMDA---KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHTTCCC-HHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 899999998655 5555566666666664332 2445545544444567777776655543
No 115
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=74.10 E-value=20 Score=36.78 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=77.4
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHHhhccCchh-HHHHHhcCChHHHHHhhcc----------CCCHHHHHHHHHHHHHhhC
Q 040681 161 YIAAIQMGQLSDR-IEAAIELASLAKDNDRN-KKIIVEEGGVPPLLKLLKE----------TASSEAQSAAATALYNIAN 228 (594)
Q Consensus 161 lv~~L~~~~~~~~-~~Aa~~L~~la~~~~~~-~~~i~~~g~I~~Lv~LL~~----------~~~~~v~e~A~~aL~~La~ 228 (594)
+|..|.++....+ ...+..|+-..+.++.. .+.++ .+|+..|+.+|.. ..+...+..++.+|..|-.
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN 149 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 149 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence 4555655432222 23455555444443433 35555 7889999998852 1124778889999999988
Q ss_pred ChhHHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 229 DQERVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 229 ~~~~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.......++ ...++..|+..|.+..+.++..+...|..+|..+
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 888777777 5668999999999999999999999999999765
No 116
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.27 E-value=64 Score=37.55 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCC-HHHHHHhhhcCChhhHHHHHHHHHHHhcC----CChhhHHHHHHHHHHhhcCChhh-
Q 040681 400 QGELQFNCLMTIMEITAAAESN-ADLRRAAFKTNSPAAKAVVDQLLRVINDL----DSPTLQIPAIKSIGSLARTFPAR- 473 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~-~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~----~~~~v~~~a~~aL~~La~~~~~~- 473 (594)
+...++.+++++..|+ +.- ....+ .+ ...+++.|+.+.... +.+.++..++.+++..+.-....
T Consensus 466 ~W~~~eaal~algsia---~~~~~~~e~-~~------l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~ 535 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSIS---GTMSEDTEK-RF------VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW 535 (1049)
T ss_dssp CHHHHHHHHHHHHHTT---TSSCHHHHH-HH------HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHh---cccCchhhH-HH------HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH
Confidence 4466788888887654 321 11111 01 123555555533211 11334445778888777432221
Q ss_pred --hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 474 --ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 474 --~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
-..+++.|+..|.+.++.|+..||+++.+|+.
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 12567777778888899999999999999975
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=68.79 E-value=7.6 Score=41.80 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
+++.|+.+|+.+ ..-++- ..++..|+..+..+.-+++..+.-.|.++.. +... ...++
T Consensus 244 VRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D------------LL~~---Ld~Vv 301 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE------------FVED---KDGLC 301 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG------------GCCC---HHHHH
T ss_pred hHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH------------HHHH---HHHHH
Confidence 577888888887 422221 4566667666677778999988888877621 1211 34588
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCC-CHH-HHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHR-NQE-VATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~-~~~-v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
+.++.-|.+.+ ++|+..|+.+|.-++ .+..-..++..+...|.+- +-. ........|+++.+ ++. ...
T Consensus 302 ~aVL~GL~D~D-DDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s-----~p~--~a~ 371 (800)
T 3oc3_A 302 RKLVSLLSSPD-EDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR-----ENP--ELS 371 (800)
T ss_dssp HHHHHHTTCSS-HHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH-----HCT--TCC
T ss_pred HHHHhhcCCcc-cHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc-----CCc--ccc
Confidence 88888888776 999999999999998 2211224555555555322 111 12222334455433 010 000
Q ss_pred HHcCChHHHHHhccCCch-HhHhHH
Q 040681 519 IEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 519 ~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
....-+|.|-.+++..-+ |+.+.+
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL 396 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSIL 396 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHH
Confidence 112567888888888877 888777
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=68.53 E-value=57 Score=30.93 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHHHH-Hh-cCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh---h
Q 040681 158 VWSYIAA-IQ-MGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ---E 231 (594)
Q Consensus 158 i~~lv~~-L~-~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~---~ 231 (594)
++.++.. +. ..+=.++..++..+..++. .+++ ..++.+...+++++ ..++..|...+.-.+..+ .
T Consensus 104 ~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~k~ 174 (240)
T 3l9t_A 104 ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYFKE 174 (240)
T ss_dssp HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTTTT
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchhhc
Confidence 4444443 32 3455577777788887774 3232 25677788888888 999998887765433211 1
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 232 ~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
.... .+|.|-.+..+++.-||..++|.|..++..+|+--..+.+
T Consensus 175 dp~~-----ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 175 NPNE-----AIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp CHHH-----HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH-----HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 1122 3555666666778999999999999999999875555544
No 119
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=65.64 E-value=1.2e+02 Score=30.81 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHHhhccCch-hHHHHHhcCChHHHHHhhccC----C------CHHHHHHHHHHHHHhhC
Q 040681 161 YIAAIQMGQLSDR-IEAAIELASLAKDNDR-NKKIIVEEGGVPPLLKLLKET----A------SSEAQSAAATALYNIAN 228 (594)
Q Consensus 161 lv~~L~~~~~~~~-~~Aa~~L~~la~~~~~-~~~~i~~~g~I~~Lv~LL~~~----~------~~~v~e~A~~aL~~La~ 228 (594)
+|..|..+....+ .+-+..|+-..+.++. ..+.+ ..+|+..|+..|..- . +...+..++.+|..|..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 3455555432221 1233444433333333 33444 368888888877421 0 25678889999999988
Q ss_pred ChhHHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 229 DQERVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 229 ~~~~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.......+. ..+++..|+..|.+..+.++..+...|..+|..+
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 877766666 5678999999999889999999999999999754
No 120
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=63.50 E-value=30 Score=40.41 Aligned_cols=132 Identities=8% Similarity=0.013 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-----CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-----EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
+..++.+++.++.+..+....-.-...++.|..+.+. +.+-++..+++++...+..-..++.. .
T Consensus 470 ~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~-----------l 538 (1049)
T 3m1i_C 470 INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-----------L 538 (1049)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-----------H
T ss_pred HHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH-----------H
Confidence 5567777777753221111100011133444443321 12334446888887665433333311 2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--------hccHHH----HHHhccCCCHHHHHHHHHHHHHhc
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--------TRVIGP----LVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--------~~~i~~----Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+.+++.++..+.+.+ +.|+..|+.++.+++...+..- ...++. |..++..-+.+-......+++.++
T Consensus 539 ~~vl~~ll~~l~~~~-~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 539 RTVILKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 447888888776543 8999999999999996422110 022333 334444444444444555555554
Q ss_pred C
Q 040681 505 S 505 (594)
Q Consensus 505 ~ 505 (594)
.
T Consensus 618 ~ 618 (1049)
T 3m1i_C 618 S 618 (1049)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=62.78 E-value=4.5 Score=38.88 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHH-----HhhCCh--hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 040681 203 LLKLLKETASSEAQSAAATALY-----NIANDQ--ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASL 263 (594)
Q Consensus 203 Lv~LL~~~~~~~v~e~A~~aL~-----~La~~~--~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~a 263 (594)
|..++++++ +.|+..++..+. .+..|+ ..|..++..-..+.|..++++++..||..++..
T Consensus 151 l~~l~~D~d-~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 151 LFRFMRDED-RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp GGGTTTCSC-HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHcCCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHc
Confidence 334444444 555555554322 222322 234444444455666666677777777766654
No 122
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=58.46 E-value=1.3e+02 Score=30.43 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=85.7
Q ss_pred HHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCc
Q 040681 221 TALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDP 300 (594)
Q Consensus 221 ~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 300 (594)
-.|+.|-.+.+..+-+++.+|+..+..+..-++.++.......|...+....-|..-+ .+.+|.++..+.-+.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~----- 337 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP----- 337 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC-----
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC-----
Confidence 3444444466668999999999999999999999988888888877764221111111 123455555544221
Q ss_pred cCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhH
Q 040681 301 RANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANS 380 (594)
Q Consensus 301 ~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~ 380 (594)
+ +++..+..+-|.|.......++
T Consensus 338 ----------------------------------------------------e-----DdvvYSGTGFLSNVVAHKq~VK 360 (619)
T 3c2g_A 338 ----------------------------------------------------D-----DEVIYSGTGFLSNVVAHKQHVK 360 (619)
T ss_dssp ----------------------------------------------------C-----HHHHHHHHHHHHHHSTTCHHHH
T ss_pred ----------------------------------------------------C-----cceEEecchHHHHHHhcccchH
Confidence 1 1345667888999877777888
Q ss_pred HHHHhhCcHHHHHHHhhhCC-------HHHHHHHHHHHHHH
Q 040681 381 RRISETKGLLCLAKLVEKEQ-------GELQFNCLMTIMEI 414 (594)
Q Consensus 381 ~~i~e~g~l~~L~~LL~~~~-------~~v~~~A~~aL~nL 414 (594)
+..+..|+++.|-..+.... ..-+.-+|..++|-
T Consensus 361 elAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 361 DIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 88889999999999886532 23344556666553
No 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=57.73 E-value=1.5e+02 Score=34.64 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=59.1
Q ss_pred cHHHHHHHhhhCC-----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHH
Q 040681 388 GLLCLAKLVEKEQ-----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKS 462 (594)
Q Consensus 388 ~l~~L~~LL~~~~-----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~a 462 (594)
.++.|+.|.+... .-+..+.++++...+.-...++.+ .+.++..|++.+...+ +.+++.|+.+
T Consensus 522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~-----------L~~vl~~L~~~m~~~~-~~vq~aA~~a 589 (1073)
T 3gjx_A 522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF-----------LKTVVNKLFEFMHETH-DGVQDMACDT 589 (1073)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-----------HHHHHHHHHHHTTCCS-TTHHHHHHHH
T ss_pred HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH-----------HHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 4556666655442 123444556776555433334422 2347778887776444 8999999999
Q ss_pred HHHhhcCChhh----hhc----cHHHHHHhc----cCCCHHHHHHHHHHHHHhcC
Q 040681 463 IGSLARTFPAR----ETR----VIGPLVAHL----SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 463 L~~La~~~~~~----~~~----~i~~Lv~lL----~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..+|..-... +.| .+..+++-+ ..-.++-...-..+++.++.
T Consensus 590 f~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 590 FIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999533221 011 344444433 33345555555556666654
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=57.56 E-value=1.1e+02 Score=31.14 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh--hH-HHHH---------
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ--ER-VRVI--------- 236 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~--~~-~~~i--------- 236 (594)
+.......+.||+.+..........+-...+|..|...|.+.. +.++..+...|..+|..+ ++ ...+
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~-~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS-HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 4567788899999998653333334444567999999998888 999999999998888633 22 2222
Q ss_pred -HhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcC--HH----hHHHHHHcCChhhHHHhhhc
Q 040681 237 -VSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHD--AL----AQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 237 -v~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~--~~----~~~~i~~~g~i~~Lv~lL~~ 293 (594)
-+..-..+++..|+++ +.+.+..+...+-.+.... .. .|..|...|..+ ++.-|+.
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~-il~~lr~ 275 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE 275 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHH-HHHHHhc
Confidence 2334578889999874 7777776665555554432 22 344555555444 4444554
No 125
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=55.24 E-value=55 Score=30.75 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh--H-HHHH----------
Q 040681 170 LSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE--R-VRVI---------- 236 (594)
Q Consensus 170 ~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~--~-~~~i---------- 236 (594)
.+.....+.||+.+..........+-..++|..|...|.+++ +.++..++..|..++..++ + -..+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~-~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTS-HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCC-chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 456777889999888653334344444567889999998877 9999999888887775322 2 2222
Q ss_pred HhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcC--HH----hHHHHHHcCChhhHHHhhhc
Q 040681 237 VSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHD--AL----AQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~--~~----~~~~i~~~g~i~~Lv~lL~~ 293 (594)
-+..-..+++..|++. +.+.+..+...+-.+.... .. .|..|...| +...+.-|+.
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~ 209 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELRE 209 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhc
Confidence 2233567788888754 6777776665555554432 22 344555555 5555555544
No 126
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.78 E-value=36 Score=30.25 Aligned_cols=73 Identities=5% Similarity=0.003 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
..+.-+..+|+++++.++..|+.-|-.+.+++ +.....|.....+.-|+++++...++.|++.+...+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34556777899999999999998888887763 55666777677778888888753347888888887776653
No 127
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=48.07 E-value=2.4e+02 Score=28.70 Aligned_cols=103 Identities=10% Similarity=0.097 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHH
Q 040681 155 LSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERV 233 (594)
Q Consensus 155 ~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~ 233 (594)
...|.+++..-+....+.|...+..+.++..+.+.. .=...++.++.+-.+.+ .+++...+..|...+. +.+..
T Consensus 24 ~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~ 98 (386)
T 3o2t_A 24 SERVVDLLNQAALITNDSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELL 98 (386)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667776554322367999999999976643221 22467888888887777 9999999988887765 43332
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARM 267 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~L 267 (594)
. .+++.|..+|++.++.|...+..+..++
T Consensus 99 ~-----~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 99 L-----KLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 2467888888888888888888877776
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=46.62 E-value=25 Score=30.42 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=46.5
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHhhCCh--hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 202 PLLKLLKETASSEAQSAAATALYNIANDQ--ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 202 ~Lv~LL~~~~~~~v~e~A~~aL~~La~~~--~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
.|.+-|++++ +.++..|+..|-.+..+. .-...|.....+.-|++++...++.|++.+...+...+.
T Consensus 46 ai~Krl~~~n-~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 46 SIMRRVNHKD-PHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHTCSS-HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3334455566 888888888887776532 234445455566777888877788999999988887764
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=46.33 E-value=1.1e+02 Score=31.04 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh--H-HHHH----------
Q 040681 170 LSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE--R-VRVI---------- 236 (594)
Q Consensus 170 ~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~--~-~~~i---------- 236 (594)
.......+.||+.++.........+-..++|..|...|.+.. +.++..++..|..+|..++ + -..+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~-~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTS-HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCC-chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 456677888999888654444444445577999999998777 8999888888877776322 2 2111
Q ss_pred HhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCH--H----hHHHHHHcCChhhHHHhhhc
Q 040681 237 VSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDA--L----AQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~--~----~~~~i~~~g~i~~Lv~lL~~ 293 (594)
-+..-..++|..|+++ +.+.+..+...+-.+....+ . .|..|...| +...+.-|+.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~ 213 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELRE 213 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTT
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhc
Confidence 2334567788888754 77777766655555554322 2 355555555 4444555544
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.07 E-value=43 Score=28.87 Aligned_cols=72 Identities=6% Similarity=0.011 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
..+.-+..+|.++++.++..|+.-|-.+.+++ +.....|.....+.-|+++++..+ +.+++.....+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 34556777899999999999988887777653 445556666667777888887766 8999998888877663
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=43.92 E-value=50 Score=28.75 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhC
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKE-----TASSEAQSAAATALYNIAN 228 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~ 228 (594)
.+..+..+|+++++.++..|+.-|-.+.+++ +.....|.....+.-|++++.. ..+..+++.+...+...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4556777999999999999999988888763 5677778777888889998874 1238999998888887764
No 132
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=42.52 E-value=93 Score=29.81 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..+++.++.+..+ .+.+++..++..|...+.........+++.|..+|.+.++.|.+.+..+.+++
T Consensus 52 ~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 52 EEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4477777776544 44889999999998888655544457889999999999999999888776665
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=40.87 E-value=49 Score=28.84 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=51.7
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhh
Q 040681 201 PPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSD------SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 201 ~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~------~~~~v~~~aa~aL~~La~ 269 (594)
..|.+-|++++ +.++..|+..|-.+..+ ......|.....+.-|++++.. .+.+|++.+...|..-+.
T Consensus 41 rai~krl~~~n-~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 41 WLLAHKIQSPQ-EKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHTCSS-HHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33445566677 99999999988888763 3345677677788889999864 378999999999888765
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=40.16 E-value=47 Score=29.02 Aligned_cols=69 Identities=13% Similarity=0.033 Sum_probs=51.7
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSD------SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~------~~~~v~~~aa~aL~~La~ 269 (594)
+..|.+-|++.+ +.++..|+..|-.+..+ ......|.....+.-|++++.. .+.+|++.+...|..-+.
T Consensus 50 ~ral~krl~~~n-~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQ-EWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 444555666677 99999999988888763 2335666666778889999863 478999999999988874
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=40.03 E-value=46 Score=29.53 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=51.4
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAE 269 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~ 269 (594)
+..|.+-|++++ +.++..|+..|-.+..+ ......|.....+.-|++++.. .++.|++.+...|..-+.
T Consensus 54 ~ral~krl~~~n-~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKV-PHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 445566677777 99999999888888763 3345566666677888888875 478999999988877764
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.28 E-value=57 Score=30.36 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La 227 (594)
..+..+..+|+++++.++..|+..|-.+.++. +.....|.....+..|+++++...+.++++.++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34556778999999999999999888888764 4566677766777788888876544788888777776655
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.82 E-value=34 Score=32.13 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=50.8
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCCh--hHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQ--ERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAE 269 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~--~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~ 269 (594)
+..|.+-|++.+ +.++..|+..|-.+..+- .....|.....+..|+++++.. +++|++.+...|...+.
T Consensus 47 ~ral~krl~~~n-~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKN-PHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 344555566667 999999999888887642 2355566666677788888654 78999999999988764
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.35 E-value=53 Score=30.83 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
..+.-+..+|+++++.++..|+..|-.+.++. +.....|.....+..|+++++...++.+++.++..|...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 35566778999999999999998888877753 34666777777777788888765448888888888877663
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.25 E-value=57 Score=29.18 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKE-----TASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~ 228 (594)
..+.-+..+|+++++.++..|+..|-.+.+++ ......|.....+.-|++++.. ..+..|++.++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999888888764 5677777777888889998863 1237899988888887764
No 140
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=35.99 E-value=5.8e+02 Score=29.70 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh---hhccHHHH-HHhccCCCHHHHHHHHHHHHHhcC
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR---ETRVIGPL-VAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~---~~~~i~~L-v~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+.+++.+..+|....++.+...++.+|++...=-+.. ....++.| ...| .+++.+..|+.+|+.++.
T Consensus 205 ~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 205 SQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 4466777777777666888888999999998533221 23667777 3666 467889999999999876
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=34.55 E-value=1e+02 Score=26.34 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=60.1
Q ss_pred hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH-----HHHH--
Q 040681 475 TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL-----ALEQ-- 546 (594)
Q Consensus 475 ~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al-----~l~~-- 546 (594)
.-++|.|+.-|.+.+..+....+..|..+-. -.+|++.+.|+++|. ....-+ .+..
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----------------~l~p~I~~vl~s~D~~W~ywil~~lv~~~~~~~ 93 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLHQS----------------IAMPHILTILQGNDIMWKYWVIKLMIPYLIYPN 93 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHTHH----------------HHHHHHHHHHHSSCHHHHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHccH----------------hhHHHHHHHHHcCChHHHHHHHHHHHHcCCHHH
Confidence 3678999999999999999999988887521 245777778888887 443333 1111
Q ss_pred -HHHHHHHhhhccccccccchHHHHHHHHHHhcccccc
Q 040681 547 -ARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHA 583 (594)
Q Consensus 547 -~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~ 583 (594)
.....-|+.... .-++++..+.+-.-|+.+|+.|+.
T Consensus 94 ~~~l~~eL~rl~~-~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 94 KQLVKSELERLSS-LEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp HHHHHHHHHHHHT-CCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHHHcc
Confidence 112222331111 234567888999999999999976
No 142
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=33.72 E-value=2.2e+02 Score=27.96 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcC--ChHHHHHhhcc----C--CCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEG--GVPPLLKLLKE----T--ASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g--~I~~Lv~LL~~----~--~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.....++..+..|++.|+...++||...+.|.+.- .|..+..-|.. + ....++..-+.+|--|..++. .
T Consensus 78 ~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~ 154 (315)
T 3qml_C 78 LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---D 154 (315)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---T
T ss_pred hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---h
Confidence 34456777899999999999999999998888742 23333332322 1 224566667777777877642 1
Q ss_pred HHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHh
Q 040681 236 IVSELGVPTIVNVLSDS--IMKVQIQVASLVARMA 268 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La 268 (594)
+ ...++..|.+++... +..++..+...+..+-
T Consensus 155 F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 155 L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 1 144778888888777 8889999988888775
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.20 E-value=1e+02 Score=26.89 Aligned_cols=72 Identities=18% Similarity=0.089 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhcc------CCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKE------TASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~------~~~~~v~e~A~~aL~~La~ 228 (594)
..+..+..+|++.++.++..|+..|-.+.+++ +.+...|.....+.-|+++++. .+ +.+++.....+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 35666778999999999999999888887754 3556677777778889999863 34 8999999988888764
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=31.65 E-value=61 Score=28.97 Aligned_cols=70 Identities=16% Similarity=0.040 Sum_probs=52.9
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCC-h-hHHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhhc
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAND-Q-ERVRVIVSELGVPTIVNVLSD------SIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~-~~~~~iv~~g~i~~Lv~lL~~------~~~~v~~~aa~aL~~La~~ 270 (594)
+..|.+-|++++ +.++..|+..|-.+..+ . .....|.+...+.-|++++.. .+..|++.+...|..-+..
T Consensus 52 ~ral~krl~~~n-~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 52 VRLLAHKIQSPQ-EWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344556667777 99999999998888874 2 245566677778889998862 2689999999999888753
No 145
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=29.87 E-value=1.4e+02 Score=30.38 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
.+++.++.+-.+.+ .+++..++..|...+......-..+++.|..+|.+.++.|.+.+..+.+++
T Consensus 63 ~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 37777777665443 788888888888877544333346778888888888888888877776665
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.57 E-value=51 Score=30.74 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=50.6
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-h-HHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQ-E-RVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAE 269 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~-~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~ 269 (594)
+..|.+-|++++ +.++..|+..|-.+..+- . ....|.+...+..|++++++. +.+|++.+...+..-+.
T Consensus 44 ~r~l~krl~~~n-~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSPN-PHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 334455566777 999999999888887642 2 345666666788888888754 78999999988887764
No 147
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=28.33 E-value=4.3e+02 Score=25.88 Aligned_cols=74 Identities=5% Similarity=0.070 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL--SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVT 289 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL--~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~ 289 (594)
.+..+.|.-.|-.++.|-+.-..|++.. ...|-.++ ...++.+++.|+++|...-.++|..-..|.+. -|.+|.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~--~p~fv~ 117 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINES--FPNFKS 117 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHH--CTTHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHh--ChhHHH
Confidence 4456788889999999988888887632 34444443 34478899999999999999999888777663 244444
No 148
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=27.47 E-value=4.9e+02 Score=26.24 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=84.5
Q ss_pred HHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH-HHHHHhcCCHHHHHHhhcC-CCHH
Q 040681 178 IELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER-VRVIVSELGVPTIVNVLSD-SIMK 255 (594)
Q Consensus 178 ~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~-~~~iv~~g~i~~Lv~lL~~-~~~~ 255 (594)
.-|.-+. ++...-.-+++.+||..+-....-++ .++.......|...+....- ... -...+|.+++.++- ++.+
T Consensus 265 DLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN-~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 265 DLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPN-NDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHh-cccccccceeecccceeEEEEeecCC-cHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcc
Confidence 3344444 43455577889999999988888888 88888888888877654321 111 13357888888874 4888
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCC
Q 040681 256 VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFET 295 (594)
Q Consensus 256 v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 295 (594)
+.-...+.|+|...+....++.-...|+|..|-+.+...+
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~ 380 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYP 380 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSC
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCC
Confidence 9999999999999887777887778899999988876554
No 149
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=26.98 E-value=4.1e+02 Score=25.17 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhH
Q 040681 155 LSWVWSYIAAIQMGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQER 232 (594)
Q Consensus 155 ~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~ 232 (594)
+..|.+++..-+....+.|...+...+.++.++ +..-. ..++.++.+-.+.+ .+++...+..|...+. +++.
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l 87 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVEL 87 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666644479999999999977653 33322 34566677655555 9999999999888774 4333
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARM 267 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~L 267 (594)
.. ..++.|..+|++.++.|...+..+..++
T Consensus 88 ~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 88 LP-----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22 2477888888888888888888777666
No 150
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.49 E-value=1.6e+02 Score=22.82 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=32.9
Q ss_pred hHHHHhhhhhhhHHHHHHh--hhhhhhhHHHHHHHHHhHHHHHHHHHHHhhh
Q 040681 9 RIEDELSYPILLAERVRSA--VDESESFKAECAEVGKQVDRLSQMLRTVVRF 58 (594)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 58 (594)
.+++.|..-....+.+... ......|...|.+.+..++++...|.+.++.
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~ 77 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQ 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555442 3335668888888888888888888777554
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.60 E-value=1.7e+02 Score=25.53 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHH-HHHhhcc--CCCHHHHHHHHHHHHHhhC
Q 040681 156 SWVWSYIAAIQ-MGQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPP-LLKLLKE--TASSEAQSAAATALYNIAN 228 (594)
Q Consensus 156 ~~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~-Lv~LL~~--~~~~~v~e~A~~aL~~La~ 228 (594)
..+.-+..+|+ .+++.++..|+.-|-.+.+++ +.....|.....+.- |++++.. ..+..+++.+...+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 34555777887 588999999998888888764 667777777777777 7888743 2226888888888777664
No 152
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=21.07 E-value=2.2e+02 Score=21.71 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHHhhhhhhhHHHHHHh--hhhhhhhHHHHHHHHHhHHHHHHHHHHHhhh
Q 040681 10 IEDELSYPILLAERVRSA--VDESESFKAECAEVGKQVDRLSQMLRTVVRF 58 (594)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 58 (594)
+++.+...-..++.+... ...+..|...|.+....++++...|.+.++.
T Consensus 25 l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 75 (97)
T 2vs0_A 25 IRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQ 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444331 2335668888888888888877777766543
No 153
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.05 E-value=75 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHHhHHHHHH
Q 040681 30 ESESFKAECAEVGKQVDRLSQ 50 (594)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~ 50 (594)
.++-.+.+|.+++.|.+.|..
T Consensus 26 rieelkkkweelkkkieelgg 46 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGG 46 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 366799999999999998864
No 154
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.80 E-value=2.4e+02 Score=21.69 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=31.8
Q ss_pred hHHHHhhhhhhhHHHHHHh--hhhhhhhHHHHHHHHHhHHHHHHHHHHHhhh
Q 040681 9 RIEDELSYPILLAERVRSA--VDESESFKAECAEVGKQVDRLSQMLRTVVRF 58 (594)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 58 (594)
.+++.+...-..++.+... ...+..|...|.+....+.++...|.+.++.
T Consensus 27 ~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (99)
T 3zbh_A 27 NVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQ 78 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554432 2335668888888888888888888776544
Done!