BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040683
SPAASTASQCRSKEKNSLPEVSGTLKGKTESAISVTKTLVYAVFCIAVSFSPFKVPAIAA
TVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAK
LALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEK
VGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRF
SREMRRRSIER

High Scoring Gene Products

Symbol, full name Information P value
emb2458
embryo defective 2458 		protein from Arabidopsis thaliana 1.8e-43

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040683
        (251 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103055 - symbol:emb2458 "embryo defective 245...   471  1.8e-43   1


>TAIR|locus:2103055 [details] [associations]
            symbol:emb2458 "embryo defective 2458" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            Pfam:PF00004 Pfam:PF01434 SMART:SM00382 GO:GO:0009506 GO:GO:0005524
            EMBL:CP002686 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
            GO:GO:0017111 IPI:IPI00526893 RefSeq:NP_187084.6 UniGene:At.40851
            ProteinModelPortal:F4J3N2 SMR:F4J3N2 PRIDE:F4J3N2
            EnsemblPlants:AT3G04340.1 GeneID:819589 KEGG:ath:AT3G04340
            OMA:VIIFVED ArrayExpress:F4J3N2 Uniprot:F4J3N2
        Length = 1320

 Score = 471 (170.9 bits), Expect = 1.8e-43, P = 1.8e-43
 Identities = 111/245 (45%), Positives = 143/245 (58%)

Query:    14 EKNSLPEVSGTLKGKT-ESAIS-VTKTLVYAVFCIAVSFSP---FKVPAIAATVASEVKL 68
             E N L   S     KT ES I  VTK LVYA+FCIA+  SP   F+ PA+A    S+V  
Sbjct:    87 EGNELVLSSEYNSAKTRESVIQFVTKPLVYALFCIAIGLSPIRSFQAPALAVPFVSDVIW 146

Query:    69 DNKGREI-ETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDXXXXXXXXXXXX 127
               K   + E EVV K  DHE++DYTRRLLETVS LLK +E VR  NG+            
Sbjct:   147 KKKKERVREKEVVLKAVDHEFSDYTRRLLETVSVLLKTIEIVRKENGEVAEVGAALDAVK 206

Query:   128 XXXEELQDEIMSGMYTXXXXXXXXXXXXXXXXGKIIDEVLMVQTEIESL--KGEKVGAEE 185
                E+LQ EIMSG+Y                  KI+DE L ++ + E L  KG +   E+
Sbjct:   207 VEKEKLQKEIMSGLYRDMRRLRKERDLLMKRADKIVDEALSLKKQSEKLLRKGAREKMEK 266

Query:   186 LLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMR 245
             L + +  ME EY+++WER+ EIDD +L++ET  +S GVREL FIEREC ELVK F+RE+ 
Sbjct:   267 LEESVDIMESEYNKIWERIDEIDDIILKKETTTLSFGVRELIFIERECVELVKSFNRELN 326

Query:   246 RRSIE 250
             ++S E
Sbjct:   327 QKSFE 331


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       220   0.00094  112 3  11 23  0.43    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.66u 0.26s 18.92t   Elapsed:  00:00:01
  Total cpu time:  18.66u 0.26s 18.92t   Elapsed:  00:00:01
  Start:  Sat May 11 07:18:24 2013   End:  Sat May 11 07:18:25 2013

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