BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040683
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 132 ELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIG 191
E+ D + G+ EL+EL+LEKE + K+ + E+ VQ EIESL E+ ++LL+
Sbjct: 857 EVGDAFIFGLQDELKELQLEKESVEKQHENAVLELGTVQREIESLIAEETNNKKLLEKAN 916
Query: 192 TMER 195
+R
Sbjct: 917 NQQR 920
>sp|Q5UR33|YR555_MIMIV Uncharacterized protein R555 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R555 PE=4 SV=1
Length = 1351
Score = 35.8 bits (81), Expect = 0.32, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 10/130 (7%)
Query: 85 DHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQ---DEIMSGM 141
D++ D + ++ T +N+LK + + + N ++ + + + K + E+ DE +
Sbjct: 685 DYDLTD-VKSIIRTQTNILKQLSD-KQNNNEIGTISVEITSKKQQLNEISTKFDEEKIKL 742
Query: 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTM--EREYDE 199
T+L ELR KE L+K++ KI + EIE+ K E+ +++I + E E DE
Sbjct: 743 ETQLGELRTNKENLLKKLIKIPK---INSDEIETHKKTVQECEDRINIIDKVFEEHENDE 799
Query: 200 LWERVGEIDD 209
L +++ ID+
Sbjct: 800 LTDKMSRIDE 809
>sp|B9K887|RL4_THENN 50S ribosomal protein L4 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rplD PE=3 SV=1
Length = 235
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204
M Q ++ ++KGEKVG E+ D + ++ YD +W V
Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYV 37
>sp|B1LBN9|RL4_THESQ 50S ribosomal protein L4 OS=Thermotoga sp. (strain RQ2) GN=rplD
PE=3 SV=1
Length = 235
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204
M Q ++ ++KGEKVG E+ D + ++ YD +W V
Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYV 37
>sp|A5IM84|RL4_THEP1 50S ribosomal protein L4 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplD PE=3 SV=1
Length = 235
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204
M Q ++ ++KGEKVG E+ D + ++ YD +W V
Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYV 37
>sp|P38516|RL4_THEMA 50S ribosomal protein L4 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rplD PE=1 SV=2
Length = 235
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204
M Q ++ ++KGEKVG E+ D + ++ YD +W V
Sbjct: 1 MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYV 37
>sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DHH1 PE=3 SV=1
Length = 549
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 110 RGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMV 169
R NG K A + +++ K +L +++ + + REL L+ ++V+ +GK + MV
Sbjct: 73 RAKNGTGKTASFIIPCLQLVKPKL-NKVQALILVPTRELALQTSQVVRTLGKHVGTQCMV 131
Query: 170 QTEIESLKGEKVGAEELLD-MIGTMEREYDELWERVGEID----------DKMLRRE 215
T SL+ + V + + ++GT R D +V ++ DKML RE
Sbjct: 132 TTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSRE 188
>sp|Q108T9|CTTB2_LOXAF Cortactin-binding protein 2 OS=Loxodonta africana GN=CTTNBP2 PE=3
SV=1
Length = 1661
Score = 34.7 bits (78), Expect = 0.65, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 83 EKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVK-RAKLALKAVKMRKEELQDEIMSGM 141
++D+E + +N L I+E V ++ R L A + R+++L+ E +
Sbjct: 92 QRDYEAGAREKEKKPVCTNPLSILEAVMAHCRKMQERMSTQLAAAESRQKKLEMEKL--- 148
Query: 142 YTELRELRLEKEKLVKRV----GKIIDEVLMVQTEIESLKGEKV-GAEELLDMIGTMERE 196
+L+ L E +KL R+ GK VLM+ E + L G+ + A+++ +++ +E E
Sbjct: 149 --QLQALEQEHKKLAARLEEERGKNKHVVLMLVKECKQLSGKVIEEAQKVEEVMAQLEEE 206
Query: 197 YDELWERVGEIDDKM---LRRETVAMSIGVRELCFIERECEELVKRFSRE 243
+R E+++++ RR T + ++L + E E+L + +RE
Sbjct: 207 K----KRTNELEEELSTEKRRSTEMEAQMEKQLSEFDTEREQLRAKLNRE 252
>sp|A8F4R2|RL4_THELT 50S ribosomal protein L4 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplD PE=3 SV=1
Length = 226
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204
M ++ ++KGEKVG +EL D I +E +D +W V
Sbjct: 1 MAVVDLYNMKGEKVGTQELKDDIFNIEPNFDVMWRYV 37
>sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo sapiens GN=TRAK2 PE=1
SV=2
Length = 914
Score = 33.1 bits (74), Expect = 2.1, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 68 LDNKGREIETEVV-FKEKDHEY-ADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKA 125
L +K I+TE V ++EK+ + +D + L ET + + ++ EE+ G + ++ R + L +
Sbjct: 227 LRSKACHIKTETVTYEEKEQQLVSDCVKELRETNAQMSRMTEELSGKSDELIRYQEELSS 286
Query: 126 VKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEE 185
+ + +LQ +L+E +EKE+L + D + E+ L+ + E
Sbjct: 287 LLSQIVDLQH--------KLKEHVIEKEELKLHLQASKDAQRQLTMELHELQDRNM---E 335
Query: 186 LLDMIGTMEREYDELWERVG 205
L M+ + E EL R G
Sbjct: 336 CLGMLHESQEEIKELRSRSG 355
>sp|Q6P9Q6|FKB15_MOUSE FK506-binding protein 15 OS=Mus musculus GN=Fkbp15 PE=1 SV=2
Length = 1216
Score = 31.6 bits (70), Expect = 6.2, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
Query: 94 RLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKE 153
R+L K+ EE+ V +L + A + ++ ELQ ++ + E LR
Sbjct: 628 RILHAEQEKAKVTEELAAATAQVSHLQLKMTAHQKKETELQLQLTDNL-KETDLLRGHVT 686
Query: 154 KLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLR 213
+L + ++ + QT+ K EK +L + ++E E +L ++ +
Sbjct: 687 RLQADLSELREASEQTQTK---FKSEKQSRRQLELKVTSLEEELTDLRAEKTSLEKNLSE 743
Query: 214 RETVAMSIGVRELCFIERECEELVKRFSREMRR 246
R+ + +E C E E +E+ K E+ R
Sbjct: 744 RKKKS----AQERCQAEAEMDEIRKSHQEELDR 772
>sp|Q54MP2|CCD22_DICDI Coiled-coil domain-containing protein 22 homolog OS=Dictyostelium
discoideum GN=DDB_G0285813 PE=3 SV=1
Length = 637
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 84 KDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYT 143
KD + YTRR+LETV N +K+ K+ + V + + LQ EI + T
Sbjct: 491 KDSNRSQYTRRILETVKN--------------IKKQKVDIDKVLLDTKNLQKEINTITDT 536
Query: 144 ELRELRLEKEKLVKRVGK 161
+R L K+ L K
Sbjct: 537 AVRTFELVKDLLYNDAKK 554
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,487,842
Number of Sequences: 539616
Number of extensions: 3377881
Number of successful extensions: 13459
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 469
Number of HSP's that attempted gapping in prelim test: 12973
Number of HSP's gapped (non-prelim): 903
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)