Query 040683
Match_columns 251
No_of_seqs 6 out of 8
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 10:45:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02562 46 endonuclease subun 95.4 0.73 1.6E-05 42.9 14.7 97 142-246 336-435 (562)
2 COG1579 Zn-ribbon protein, pos 93.0 1.1 2.4E-05 40.7 10.2 97 114-216 38-138 (239)
3 PF05816 TelA: Toxic anion res 91.5 3.6 7.8E-05 37.7 11.6 58 159-216 86-144 (333)
4 PF08580 KAR9: Yeast cortical 91.3 5.5 0.00012 40.7 13.7 126 117-247 209-353 (683)
5 PF13851 GAS: Growth-arrest sp 90.7 10 0.00023 32.9 14.1 26 86-111 16-41 (201)
6 PF04156 IncA: IncA protein; 89.7 3.2 6.9E-05 34.1 8.7 25 186-210 163-187 (191)
7 PRK02224 chromosome segregatio 89.6 19 0.00042 35.9 15.6 29 183-211 260-288 (880)
8 PRK02224 chromosome segregatio 89.4 25 0.00054 35.2 17.2 59 116-176 574-639 (880)
9 KOG0250 DNA repair protein RAD 89.0 24 0.00053 38.5 16.7 119 116-236 339-462 (1074)
10 PF10186 Atg14: UV radiation r 88.9 7.3 0.00016 33.0 10.6 61 116-176 22-89 (302)
11 PF02403 Seryl_tRNA_N: Seryl-t 86.6 4.3 9.3E-05 30.8 7.2 65 140-204 33-104 (108)
12 COG1196 Smc Chromosome segrega 86.1 39 0.00084 35.9 16.0 97 124-221 810-917 (1163)
13 PF06160 EzrA: Septation ring 85.8 30 0.00064 34.1 14.1 64 183-246 360-425 (560)
14 PF12325 TMF_TATA_bd: TATA ele 85.7 10 0.00022 31.2 9.3 53 155-207 42-94 (120)
15 PRK11637 AmiB activator; Provi 85.6 30 0.00064 32.4 13.5 14 34-47 18-32 (428)
16 KOG0979 Structural maintenance 84.8 15 0.00032 40.0 12.3 146 93-247 265-420 (1072)
17 PRK04863 mukB cell division pr 83.9 61 0.0013 36.3 16.8 26 222-247 425-454 (1486)
18 PRK04778 septation ring format 83.6 42 0.00092 32.9 14.1 50 196-245 377-428 (569)
19 PRK01156 chromosome segregatio 80.6 69 0.0015 32.5 16.5 73 139-211 359-439 (895)
20 PF12325 TMF_TATA_bd: TATA ele 78.1 34 0.00074 28.1 9.8 88 107-199 23-114 (120)
21 PRK03918 chromosome segregatio 77.5 81 0.0017 31.5 17.6 13 115-127 586-598 (880)
22 PF07200 Mod_r: Modifier of ru 77.5 29 0.00064 27.7 9.1 91 143-240 27-119 (150)
23 TIGR00606 rad50 rad50. This fa 76.6 1.2E+02 0.0025 32.9 17.5 28 184-211 884-911 (1311)
24 PF07889 DUF1664: Protein of u 75.7 46 0.001 27.8 11.2 47 49-108 4-54 (126)
25 PF10168 Nup88: Nuclear pore c 75.5 82 0.0018 32.6 13.7 56 183-246 595-650 (717)
26 TIGR00414 serS seryl-tRNA synt 75.4 48 0.001 31.6 11.4 69 139-207 33-109 (418)
27 PF07888 CALCOCO1: Calcium bin 75.2 81 0.0018 32.2 13.3 64 129-193 165-232 (546)
28 PLN02678 seryl-tRNA synthetase 74.3 62 0.0013 31.7 12.0 60 107-168 5-65 (448)
29 COG1579 Zn-ribbon protein, pos 74.1 27 0.00059 31.9 9.0 68 145-215 12-79 (239)
30 PF10186 Atg14: UV radiation r 74.0 54 0.0012 27.8 12.9 73 140-212 24-101 (302)
31 PRK04778 septation ring format 73.8 86 0.0019 30.8 12.9 33 180-212 382-414 (569)
32 COG4026 Uncharacterized protei 73.5 31 0.00066 32.6 9.3 45 180-224 176-220 (290)
33 COG1392 Phosphate transport re 73.3 66 0.0014 28.5 16.5 150 81-236 8-166 (217)
34 PF08614 ATG16: Autophagy prot 72.4 59 0.0013 27.5 10.2 52 143-204 130-181 (194)
35 COG1196 Smc Chromosome segrega 71.1 1.5E+02 0.0033 31.7 18.6 25 185-209 825-849 (1163)
36 PF10168 Nup88: Nuclear pore c 69.9 1E+02 0.0022 32.0 12.8 75 102-179 541-615 (717)
37 COG2433 Uncharacterized conser 69.8 76 0.0017 33.2 11.9 39 180-218 473-511 (652)
38 TIGR03007 pepcterm_ChnLen poly 68.6 1E+02 0.0023 28.8 14.0 68 141-208 315-382 (498)
39 cd07596 BAR_SNX The Bin/Amphip 68.4 60 0.0013 26.0 10.4 68 145-212 105-176 (218)
40 PRK09039 hypothetical protein; 66.9 1.1E+02 0.0024 28.5 11.8 63 146-211 119-181 (343)
41 PF10146 zf-C4H2: Zinc finger- 66.3 61 0.0013 29.2 9.4 26 147-172 5-30 (230)
42 COG1340 Uncharacterized archae 65.6 1.3E+02 0.0027 28.7 15.2 131 81-211 74-244 (294)
43 KOG0796 Spliceosome subunit [R 65.4 38 0.00082 32.6 8.3 41 135-177 128-169 (319)
44 PF15619 Lebercilin: Ciliary p 65.4 94 0.002 27.2 12.1 130 99-246 21-161 (194)
45 PF11932 DUF3450: Protein of u 65.3 94 0.002 27.1 10.2 40 139-178 52-91 (251)
46 PF10146 zf-C4H2: Zinc finger- 65.3 74 0.0016 28.7 9.7 40 184-232 77-116 (230)
47 PRK05431 seryl-tRNA synthetase 64.2 43 0.00093 32.0 8.5 68 140-207 32-106 (425)
48 PF06160 EzrA: Septation ring 64.1 1.4E+02 0.0031 29.4 12.2 133 59-200 39-180 (560)
49 TIGR00606 rad50 rad50. This fa 63.4 2.2E+02 0.0049 30.8 17.0 120 113-237 764-894 (1311)
50 KOG0964 Structural maintenance 63.1 1.7E+02 0.0036 32.7 13.3 116 86-203 223-357 (1200)
51 PF10267 Tmemb_cc2: Predicted 62.9 92 0.002 30.4 10.5 30 186-215 288-318 (395)
52 PF02994 Transposase_22: L1 tr 62.2 15 0.00031 34.6 4.9 59 183-243 160-219 (370)
53 KOG0971 Microtubule-associated 61.5 60 0.0013 35.8 9.7 95 130-226 398-509 (1243)
54 PRK01156 chromosome segregatio 60.6 2E+02 0.0043 29.3 17.4 39 117-156 200-238 (895)
55 smart00150 SPEC Spectrin repea 60.4 52 0.0011 22.5 11.7 96 87-208 2-97 (101)
56 KOG0161 Myosin class II heavy 60.3 2.3E+02 0.005 33.2 14.3 118 93-211 1392-1542(1930)
57 PF08317 Spc7: Spc7 kinetochor 60.0 1.4E+02 0.003 27.3 11.5 29 132-160 145-173 (325)
58 KOG3684 Ca2+-activated K+ chan 57.8 84 0.0018 31.9 9.5 76 132-208 393-468 (489)
59 PRK11637 AmiB activator; Provi 57.8 1.2E+02 0.0025 28.5 10.0 19 119-137 45-63 (428)
60 COG4026 Uncharacterized protei 57.2 81 0.0018 29.9 8.8 32 186-217 154-185 (290)
61 KOG2628 Farnesyl cysteine-carb 57.2 3 6.6E-05 37.6 -0.4 57 36-95 132-193 (201)
62 PF06005 DUF904: Protein of un 57.1 83 0.0018 23.8 8.1 56 152-207 6-65 (72)
63 PF00261 Tropomyosin: Tropomyo 57.1 1.3E+02 0.0029 26.2 12.2 115 81-205 108-228 (237)
64 PRK04863 mukB cell division pr 56.9 3.4E+02 0.0073 30.8 14.9 36 121-157 300-335 (1486)
65 PF03915 AIP3: Actin interacti 56.7 90 0.0019 30.7 9.3 40 86-133 209-248 (424)
66 smart00787 Spc7 Spc7 kinetocho 56.4 1.7E+02 0.0038 27.3 15.9 88 129-216 165-260 (312)
67 KOG2196 Nuclear porin [Nuclear 56.3 83 0.0018 29.6 8.6 41 135-179 112-152 (254)
68 PF07106 TBPIP: Tat binding pr 55.9 1.1E+02 0.0025 25.0 8.8 88 138-240 74-161 (169)
69 PF07889 DUF1664: Protein of u 55.9 1.2E+02 0.0026 25.3 10.0 8 64-71 31-38 (126)
70 TIGR01069 mutS2 MutS2 family p 55.9 1.1E+02 0.0023 31.8 10.2 74 129-202 490-564 (771)
71 COG2433 Uncharacterized conser 55.7 2.3E+02 0.0049 29.9 12.3 48 117-165 418-465 (652)
72 PF11642 Blo-t-5: Mite allerge 55.6 12 0.00026 31.5 2.9 79 170-248 12-97 (118)
73 KOG0996 Structural maintenance 54.9 1.7E+02 0.0037 33.0 11.8 37 128-164 885-921 (1293)
74 TIGR01149 mtrG N5-methyltetrah 53.7 12 0.00026 29.1 2.4 18 194-211 11-28 (70)
75 PRK10869 recombination and rep 53.6 2.4E+02 0.0051 28.0 13.4 60 91-154 219-286 (553)
76 PF07888 CALCOCO1: Calcium bin 53.5 1.3E+02 0.0028 30.8 10.1 71 141-211 155-229 (546)
77 PRK01026 tetrahydromethanopter 53.1 12 0.00027 29.5 2.4 18 195-212 15-32 (77)
78 PF05266 DUF724: Protein of un 51.8 1.6E+02 0.0034 25.8 9.2 15 227-241 169-183 (190)
79 PF03194 LUC7: LUC7 N_terminus 51.6 1.9E+02 0.004 26.2 10.1 18 90-107 79-96 (254)
80 PF10174 Cast: RIM-binding pro 51.4 3.3E+02 0.0071 29.0 12.9 89 88-178 68-163 (775)
81 PF04111 APG6: Autophagy prote 51.2 1.4E+02 0.003 27.7 9.2 57 118-175 75-131 (314)
82 PF04210 MtrG: Tetrahydrometha 51.0 14 0.0003 28.8 2.4 19 194-212 11-29 (70)
83 PF03357 Snf7: Snf7; InterPro 50.0 1.2E+02 0.0027 23.7 9.9 72 148-219 6-79 (171)
84 PF02403 Seryl_tRNA_N: Seryl-t 49.3 1.1E+02 0.0025 23.1 9.7 72 140-211 26-97 (108)
85 KOG0933 Structural maintenance 49.3 2.6E+02 0.0056 31.3 12.0 71 109-179 859-935 (1174)
86 PF14992 TMCO5: TMCO5 family 47.7 2.3E+02 0.0051 26.8 10.2 109 92-205 13-140 (280)
87 PF01920 Prefoldin_2: Prefoldi 47.3 1.1E+02 0.0024 22.4 7.2 76 138-213 7-94 (106)
88 COG1340 Uncharacterized archae 47.3 2.6E+02 0.0057 26.7 14.9 106 93-208 134-248 (294)
89 PLN02320 seryl-tRNA synthetase 47.0 1.3E+02 0.0029 30.2 9.0 66 140-205 97-168 (502)
90 PRK13979 DNA topoisomerase IV 47.0 2.4E+02 0.0052 30.5 11.3 45 191-243 449-493 (957)
91 PF09726 Macoilin: Transmembra 46.9 3.6E+02 0.0078 28.1 14.7 121 113-238 424-594 (697)
92 KOG0161 Myosin class II heavy 46.6 5.6E+02 0.012 30.3 15.3 94 112-206 1609-1706(1930)
93 KOG0979 Structural maintenance 46.4 3.2E+02 0.0069 30.4 12.1 104 87-197 242-355 (1072)
94 PF01865 PhoU_div: Protein of 46.3 1.7E+02 0.0037 24.3 14.6 157 86-246 11-174 (214)
95 cd07596 BAR_SNX The Bin/Amphip 46.1 1.5E+02 0.0033 23.7 12.6 67 136-205 145-216 (218)
96 PRK04406 hypothetical protein; 45.4 1.3E+02 0.0029 22.8 7.2 52 182-241 5-56 (75)
97 KOG2132 Uncharacterized conser 45.3 12 0.00027 36.3 1.6 78 26-126 29-108 (355)
98 PF01486 K-box: K-box region; 45.1 68 0.0015 24.4 5.3 43 118-160 57-99 (100)
99 PF14735 HAUS4: HAUS augmin-li 44.5 2.5E+02 0.0054 25.6 12.3 113 84-206 104-227 (238)
100 KOG0018 Structural maintenance 44.4 3.1E+02 0.0068 30.7 11.7 43 180-224 724-766 (1141)
101 KOG0977 Nuclear envelope prote 43.3 3.9E+02 0.0085 27.5 13.3 119 86-208 52-189 (546)
102 PF05278 PEARLI-4: Arabidopsis 42.7 3E+02 0.0065 26.0 10.6 35 180-214 206-240 (269)
103 PF06810 Phage_GP20: Phage min 42.3 2.1E+02 0.0045 24.1 8.8 64 135-198 5-68 (155)
104 PF09325 Vps5: Vps5 C terminal 42.1 2E+02 0.0044 23.9 11.8 120 81-204 109-233 (236)
105 cd07627 BAR_Vps5p The Bin/Amph 40.1 2.4E+02 0.0052 24.2 10.5 72 141-212 93-174 (216)
106 KOG0250 DNA repair protein RAD 40.1 5.8E+02 0.013 28.6 17.2 54 183-244 339-392 (1074)
107 TIGR03185 DNA_S_dndD DNA sulfu 39.9 3.9E+02 0.0085 26.6 17.4 16 54-69 340-355 (650)
108 PF05529 Bap31: B-cell recepto 39.5 2.1E+02 0.0046 23.9 7.9 16 139-154 157-172 (192)
109 PF00038 Filament: Intermediat 39.2 2.7E+02 0.0058 24.5 12.2 9 119-127 167-175 (312)
110 PF04111 APG6: Autophagy prote 38.9 3.2E+02 0.007 25.3 11.1 23 185-207 110-132 (314)
111 PRK09343 prefoldin subunit bet 38.6 2.1E+02 0.0045 23.0 9.9 32 180-211 77-108 (121)
112 PF00170 bZIP_1: bZIP transcri 38.6 88 0.0019 22.0 4.7 34 180-213 25-58 (64)
113 PF15070 GOLGA2L5: Putative go 38.4 4.6E+02 0.0099 27.0 11.4 52 125-176 17-69 (617)
114 COG3883 Uncharacterized protei 38.3 2.8E+02 0.0062 26.0 9.2 43 133-175 35-77 (265)
115 PLN02678 seryl-tRNA synthetase 38.3 3.1E+02 0.0067 27.0 9.8 28 180-207 84-111 (448)
116 PF07544 Med9: RNA polymerase 37.9 1.8E+02 0.0039 22.1 8.3 40 98-137 4-44 (83)
117 PF11221 Med21: Subunit 21 of 37.2 1.1E+02 0.0025 25.0 5.9 76 84-170 63-138 (144)
118 PF08287 DASH_Spc19: Spc19; I 37.0 2.6E+02 0.0057 23.7 9.1 39 89-127 3-41 (153)
119 PRK05431 seryl-tRNA synthetase 36.9 3.2E+02 0.0069 26.3 9.5 70 142-211 27-96 (425)
120 PF05529 Bap31: B-cell recepto 36.8 1.7E+02 0.0037 24.5 6.9 30 123-152 90-131 (192)
121 PF12917 HD_2: HD containing h 36.3 99 0.0021 28.3 5.8 45 84-128 124-171 (215)
122 PF04156 IncA: IncA protein; 36.2 2.4E+02 0.0052 23.1 12.9 21 189-209 159-179 (191)
123 cd00176 SPEC Spectrin repeats, 36.2 2E+02 0.0043 22.0 9.6 116 86-211 92-209 (213)
124 cd08316 Death_FAS_TNFRSF6 Deat 35.7 36 0.00078 27.0 2.6 59 68-129 23-82 (97)
125 PHA02562 46 endonuclease subun 35.6 3.8E+02 0.0083 25.2 16.8 26 183-208 301-326 (562)
126 PRK02119 hypothetical protein; 35.6 1.9E+02 0.0042 21.7 7.0 51 183-241 4-54 (73)
127 smart00787 Spc7 Spc7 kinetocho 35.5 3.8E+02 0.0082 25.1 12.1 37 160-196 249-286 (312)
128 PF12718 Tropomyosin_1: Tropom 35.4 2.6E+02 0.0056 23.2 11.7 31 140-170 32-62 (143)
129 PRK10636 putative ABC transpor 34.9 1.5E+02 0.0033 29.4 7.3 64 145-208 565-632 (638)
130 PF03961 DUF342: Protein of un 34.3 3.2E+02 0.0069 26.0 9.0 32 183-214 377-408 (451)
131 PHA01750 hypothetical protein 34.0 1.9E+02 0.0042 22.8 6.3 34 142-175 41-74 (75)
132 KOG2991 Splicing regulator [RN 33.6 4.6E+02 0.0099 25.5 11.6 133 81-213 138-296 (330)
133 PF10368 YkyA: Putative cell-w 33.4 76 0.0017 27.8 4.5 98 100-215 18-116 (204)
134 TIGR00153 conserved hypothetic 33.1 3E+02 0.0066 23.3 16.0 152 87-244 15-174 (216)
135 PF15619 Lebercilin: Ciliary p 32.8 3.4E+02 0.0074 23.8 11.3 100 108-208 69-191 (194)
136 PRK03826 5'-nucleotidase; Prov 32.5 74 0.0016 27.7 4.2 32 94-125 133-164 (195)
137 PRK03100 sec-independent trans 32.5 1.4E+02 0.003 25.4 5.8 40 118-157 32-71 (136)
138 KOG0980 Actin-binding protein 32.0 7.5E+02 0.016 27.5 16.8 139 83-221 330-492 (980)
139 PF05761 5_nucleotid: 5' nucle 31.4 97 0.0021 30.4 5.3 18 79-96 297-314 (448)
140 PF15456 Uds1: Up-regulated Du 31.2 3E+02 0.0066 22.7 9.5 25 136-162 17-41 (124)
141 PF13514 AAA_27: AAA domain 30.6 6.9E+02 0.015 26.7 13.4 41 138-178 891-931 (1111)
142 PRK02195 V-type ATP synthase s 30.0 2.3E+02 0.0049 24.8 6.8 52 116-168 19-70 (201)
143 COG1480 Predicted membrane-ass 29.7 1.9E+02 0.0041 30.7 7.2 79 89-167 87-177 (700)
144 PF12128 DUF3584: Protein of u 29.6 7.6E+02 0.016 26.8 14.6 27 186-212 357-383 (1201)
145 PF03127 GAT: GAT domain; Int 29.5 2.5E+02 0.0055 21.3 8.6 62 118-179 22-86 (100)
146 PF13949 ALIX_LYPXL_bnd: ALIX 29.4 3.8E+02 0.0081 23.2 13.0 105 100-211 9-114 (296)
147 PF02346 Vac_Fusion: Chordopox 29.3 1.2E+02 0.0027 22.5 4.3 35 183-217 3-37 (57)
148 PF04350 PilO: Pilus assembly 28.9 1.8E+02 0.0038 22.4 5.4 59 166-224 8-69 (144)
149 TIGR01005 eps_transp_fam exopo 28.9 6.1E+02 0.013 25.5 14.2 42 170-211 365-406 (754)
150 KOG0612 Rho-associated, coiled 28.8 9.4E+02 0.02 27.6 15.9 44 134-177 593-636 (1317)
151 PF08264 Anticodon_1: Anticodo 28.8 2.3E+02 0.005 21.6 6.0 65 39-112 66-140 (153)
152 PF04977 DivIC: Septum formati 28.7 2.1E+02 0.0045 20.0 6.0 40 144-183 18-57 (80)
153 PF06657 Cep57_MT_bd: Centroso 28.0 2.1E+02 0.0046 21.8 5.6 48 183-240 19-66 (79)
154 PRK14127 cell division protein 28.0 1.8E+02 0.004 23.8 5.6 46 114-160 23-68 (109)
155 COG4064 MtrG Tetrahydromethano 27.4 59 0.0013 25.7 2.5 17 194-210 14-30 (75)
156 PF00521 DNA_topoisoIV: DNA gy 27.1 5.6E+02 0.012 24.5 10.8 36 172-207 376-417 (426)
157 PRK06328 type III secretion sy 27.1 4.4E+02 0.0095 23.3 9.0 60 142-204 25-90 (223)
158 PRK14127 cell division protein 27.0 2.5E+02 0.0055 23.0 6.2 59 138-196 39-100 (109)
159 PF04548 AIG1: AIG1 family; I 27.0 51 0.0011 27.7 2.3 39 97-135 172-210 (212)
160 PRK14160 heat shock protein Gr 27.0 2.9E+02 0.0062 24.9 7.1 49 183-246 56-104 (211)
161 PRK00736 hypothetical protein; 26.9 2.7E+02 0.0057 20.7 6.7 48 186-241 3-50 (68)
162 PF07426 Dynactin_p22: Dynacti 26.7 3.3E+02 0.0073 23.5 7.2 52 144-195 6-68 (174)
163 TIGR00634 recN DNA repair prot 26.2 6.3E+02 0.014 24.8 14.2 67 91-157 223-294 (563)
164 PF08614 ATG16: Autophagy prot 26.1 4.1E+02 0.0088 22.5 8.0 21 226-246 167-187 (194)
165 PRK10626 hypothetical protein; 26.0 5.3E+02 0.012 23.9 9.0 45 153-203 92-137 (239)
166 TIGR03017 EpsF chain length de 25.9 5.2E+02 0.011 23.7 15.5 93 115-208 255-369 (444)
167 PF10224 DUF2205: Predicted co 25.8 3.3E+02 0.0071 21.3 6.9 37 136-172 16-52 (80)
168 COG1382 GimC Prefoldin, chaper 25.6 4E+02 0.0088 22.3 10.1 42 172-213 67-109 (119)
169 PF13094 CENP-Q: CENP-Q, a CEN 25.4 3.4E+02 0.0074 22.1 6.7 21 183-203 64-84 (160)
170 PHA02675 ORF104 fusion protein 25.2 1.6E+02 0.0035 24.0 4.7 36 183-218 32-67 (90)
171 TIGR01061 parC_Gpos DNA topois 25.2 8E+02 0.017 25.7 11.7 45 190-242 429-473 (738)
172 PF09325 Vps5: Vps5 C terminal 25.2 4E+02 0.0086 22.1 10.0 68 141-208 113-190 (236)
173 cd00155 RasGEF Guanine nucleot 25.2 1.2E+02 0.0026 25.4 4.2 43 75-118 126-179 (237)
174 COG3937 Uncharacterized conser 24.8 3.6E+02 0.0077 22.6 6.7 13 199-211 87-99 (108)
175 PRK10698 phage shock protein P 24.7 4.9E+02 0.011 23.0 12.0 84 138-223 101-187 (222)
176 smart00338 BRLZ basic region l 24.6 1.6E+02 0.0035 20.7 4.2 33 180-212 25-57 (65)
177 PF03961 DUF342: Protein of un 24.6 6.1E+02 0.013 24.1 9.1 28 180-207 381-408 (451)
178 TIGR02680 conserved hypothetic 24.3 1E+03 0.022 26.5 16.6 56 183-247 937-992 (1353)
179 cd07055 BMC_like_2 Bacterial M 24.1 58 0.0012 24.7 1.9 17 113-129 44-60 (61)
180 TIGR03319 YmdA_YtgF conserved 24.1 7.3E+02 0.016 24.8 13.0 16 231-246 163-178 (514)
181 PRK04325 hypothetical protein; 24.0 3.2E+02 0.0069 20.6 6.9 51 183-241 4-54 (74)
182 PF10473 CENP-F_leu_zip: Leuci 23.9 4.5E+02 0.0098 22.3 12.1 52 118-177 7-58 (140)
183 PF00038 Filament: Intermediat 23.7 5E+02 0.011 22.8 16.3 152 88-245 16-190 (312)
184 PRK09631 DNA topoisomerase IV 23.7 8.5E+02 0.018 25.4 12.3 42 190-242 406-447 (635)
185 PRK10865 protein disaggregatio 23.4 7.9E+02 0.017 25.9 10.4 35 120-155 395-429 (857)
186 TIGR01612 235kDa-fam reticuloc 23.4 1.5E+03 0.033 28.2 13.4 93 129-222 1167-1282(2757)
187 PF08776 VASP_tetra: VASP tetr 23.3 1.4E+02 0.0031 21.1 3.6 21 131-151 6-26 (40)
188 PF14942 Muted: Organelle biog 23.2 4.7E+02 0.01 22.2 11.8 112 90-203 14-133 (145)
189 KOG0964 Structural maintenance 23.0 1.1E+03 0.025 26.7 13.8 51 183-238 413-467 (1200)
190 PF05103 DivIVA: DivIVA protei 22.7 55 0.0012 25.1 1.6 62 115-177 19-80 (131)
191 PF02996 Prefoldin: Prefoldin 22.5 1.9E+02 0.0042 21.8 4.5 29 183-211 79-107 (120)
192 PRK04654 sec-independent trans 22.4 5.8E+02 0.013 23.6 8.2 17 94-110 24-40 (214)
193 PF11559 ADIP: Afadin- and alp 22.3 4.1E+02 0.009 21.3 13.4 106 92-205 33-150 (151)
194 cd08315 Death_TRAILR_DR4_DR5 D 22.3 1.4E+02 0.003 23.3 3.7 67 68-138 22-91 (96)
195 cd08313 Death_TNFR1 Death doma 22.2 68 0.0015 24.7 2.0 58 68-129 14-73 (80)
196 PF05377 FlaC_arch: Flagella a 21.9 2E+02 0.0044 21.3 4.3 30 182-211 8-37 (55)
197 PF09969 DUF2203: Uncharacteri 21.9 2.9E+02 0.0063 22.6 5.6 22 144-165 44-65 (120)
198 PF08352 oligo_HPY: Oligopepti 21.9 39 0.00085 23.3 0.6 21 85-105 11-31 (64)
199 PF01920 Prefoldin_2: Prefoldi 21.8 3.3E+02 0.0071 19.9 6.0 44 135-178 61-104 (106)
200 cd07663 BAR_SNX5 The Bin/Amphi 21.5 6.1E+02 0.013 23.0 10.2 109 99-225 3-113 (218)
201 TIGR02231 conserved hypothetic 21.1 7.6E+02 0.016 23.8 9.4 23 113-135 70-92 (525)
202 COG0216 PrfA Protein chain rel 20.8 7E+02 0.015 24.7 8.8 19 193-211 81-99 (363)
203 PF04102 SlyX: SlyX; InterPro 20.8 3.5E+02 0.0075 19.8 6.0 47 186-240 2-48 (69)
204 PF14943 MRP-S26: Mitochondria 20.7 5.6E+02 0.012 22.2 9.5 25 155-179 56-80 (170)
205 KOG4302 Microtubule-associated 20.6 7E+02 0.015 26.3 9.3 71 142-212 102-191 (660)
206 PF14584 DUF4446: Protein of u 20.6 4.2E+02 0.0092 22.5 6.6 45 167-211 26-76 (151)
207 cd07627 BAR_Vps5p The Bin/Amph 20.5 5.5E+02 0.012 22.0 11.8 66 136-204 143-213 (216)
208 PF12128 DUF3584: Protein of u 20.5 1.1E+03 0.024 25.6 17.1 29 23-52 543-572 (1201)
209 KOG2391 Vacuolar sorting prote 20.3 5.1E+02 0.011 25.7 7.8 60 152-211 216-276 (365)
210 TIGR00219 mreC rod shape-deter 20.2 3E+02 0.0065 25.1 6.0 15 141-155 71-85 (283)
211 PF15188 CCDC-167: Coiled-coil 20.2 3.5E+02 0.0076 21.5 5.6 38 192-229 40-82 (85)
212 cd00176 SPEC Spectrin repeats, 20.1 4E+02 0.0088 20.3 15.6 59 184-242 139-197 (213)
No 1
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.43 E-value=0.73 Score=42.90 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhh---
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVA--- 218 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~a--- 218 (251)
...+.+++.+...+.......+...-.++.+.++|- ....++++.+..++.+|+++-..+.+++....+++.+.
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~ 412 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ---AEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL 412 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444445555555532 22455788899999999999999999998888887643
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683 219 MSIGVRELCFIERECEELVKRFSREMRR 246 (251)
Q Consensus 219 mSiGVrEL~FIeREce~LV~rF~~Emr~ 246 (251)
-..|++ .+|. ...+..|+..|.+
T Consensus 413 ~~~g~~--~~i~---~~~l~~~n~~~~~ 435 (562)
T PHA02562 413 KDSGIK--ASII---KKYIPYFNKQINH 435 (562)
T ss_pred HhhhHH--HHHH---HHHHHHHHHHHHH
Confidence 356887 5565 4577888888765
No 2
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.05 E-value=1.1 Score=40.70 Aligned_cols=97 Identities=20% Similarity=0.370 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHH
Q 040683 114 GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDM 189 (251)
Q Consensus 114 gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~ 189 (251)
.+..+...++-+.....+.++.++ +++=.+++++++.++.++..-+. .+-.+|++.|-+. .+.+..|++.
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv-~~~e~ei~~~r~r~~~~e~kl~~-----v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQV-SQLESEIQEIRERIKRAEEKLSA-----VKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666665 45666677777666655554433 3334666665554 5556666666
Q ss_pred HHhhHHHHHHHHHHhhhhhhHhhhhhh
Q 040683 190 IGTMEREYDELWERVGEIDDKMLRRET 216 (251)
Q Consensus 190 m~~~E~Eyneiweki~EIeD~ilRrET 216 (251)
|..+..++.++-..+...-+.+.+.|+
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665554
No 3
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=91.53 E-value=3.6 Score=37.66 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhHHHHhhhhh-hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhh
Q 040683 159 VGKIIDEVLMVQTEIESLKGE-KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRET 216 (251)
Q Consensus 159 a~kI~d~~l~~krE~ekLlg~-~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET 216 (251)
.+++...-=+++.++|++.+. ..|...|.+....++..|+..|+-+.+++..|.--+.
T Consensus 86 ~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~ 144 (333)
T PF05816_consen 86 LERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGEL 144 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555667777777777 6677889999999999999999999999888765443
No 4
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=91.30 E-value=5.5 Score=40.72 Aligned_cols=126 Identities=20% Similarity=0.290 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHH
Q 040683 117 KRAKLALKAVKMRKEELQDEIMSGMYTE-LRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIG 191 (251)
Q Consensus 117 k~v~~ALk~VKlkKeelQ~EIms~ly~e-lr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~ 191 (251)
.=+.+.|+++-++-++-|.-- +..|+. ..+|....+.|+++-.+...++-.+|+|.=. -.| +-=+.++..+++
T Consensus 209 ~PLraSLdfLP~Ri~~F~~ra-~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELie-dRW~~vFr~l~~q~~~m~e 286 (683)
T PF08580_consen 209 QPLRASLDFLPMRIEEFQSRA-ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIE-DRWNIVFRNLGRQAQKMCE 286 (683)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH
Confidence 346788999999999988776 445554 4567777888888888888888888888644 345 555888999999
Q ss_pred hhHHHHHHHHHHhhh---------hhhHhhhhhhhhhhhh-----hhhhhHhHHHHHHHHHHHHHHHHhh
Q 040683 192 TMEREYDELWERVGE---------IDDKMLRRETVAMSIG-----VRELCFIERECEELVKRFSREMRRR 247 (251)
Q Consensus 192 ~~E~Eyneiweki~E---------IeD~ilRrET~amSiG-----VrEL~FIeREce~LV~rF~~Emr~~ 247 (251)
.+|+...++.+.++- |-++|--+|.....+| -|+++-|+.. +..||+.+|.++
T Consensus 287 sver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~g---v~~r~n~~L~~r 353 (683)
T PF08580_consen 287 SVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKG---VADRLNADLAQR 353 (683)
T ss_pred HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhh---HHHHhhHHHHHH
Confidence 999999999999765 7778888886666555 3566666665 788999888765
No 5
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.74 E-value=10 Score=32.86 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhc
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRG 111 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~ 111 (251)
.-|+|-|++-|+.+..|=.-|.+.|+
T Consensus 16 ~YYndIT~~NL~lIksLKeei~emkk 41 (201)
T PF13851_consen 16 NYYNDITLNNLELIKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999888888775
No 6
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.69 E-value=3.2 Score=34.06 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~ 210 (251)
+...+..+...|+.+.+.+.+.++.
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555444443
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=89.61 E-value=19 Score=35.94 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=12.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
+..+.+++..+++.++.+-.+|.++++.+
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~ 288 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERL 288 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=89.42 E-value=25 Score=35.20 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhhchHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 040683 116 VKRAKLALKAVKMRKEELQDEIMSGMYTELR-------ELRLEKEKLVKRVGKIIDEVLMVQTEIESL 176 (251)
Q Consensus 116 ~k~v~~ALk~VKlkKeelQ~EIms~ly~elr-------~lkkeke~L~~Ra~kI~d~~l~~krE~ekL 176 (251)
+.++...+..+.-++..++ + +..++.++. +|+.+++.|..+-+++-...-..+.+++.|
T Consensus 574 ~~~~~~~~~~l~~~~~~le-~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 574 VAELNSKLAELKERIESLE-R-IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555 2 444555444 444444455555555666666666666665
No 9
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.04 E-value=24 Score=38.51 Aligned_cols=119 Identities=20% Similarity=0.351 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhhh----hhhhHHHHHHH
Q 040683 116 VKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEV-LMVQTEIESLKGE----KVGAEELLDMI 190 (251)
Q Consensus 116 ~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~-l~~krE~ekLlg~----~~~~~~L~e~m 190 (251)
++.+...++.++.+..+++.+|= .--..+++++++.+.|.+....+=-+. =.++.+.+..=.+ ..-++.|++-+
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~-~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIR-EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444431 223345555555555555444332222 1111111111111 33377788888
Q ss_pred HhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHH
Q 040683 191 GTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEEL 236 (251)
Q Consensus 191 ~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~L 236 (251)
..|..++|.+.+++-+++....-.+++-.++- +-+.|+..+...|
T Consensus 418 ~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~-k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 418 NSLREELNEVKEKAKEEEEEKEHIEGEILQLR-KKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 88889999999998888887766666555543 4567777777666
No 10
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.85 E-value=7.3 Score=32.99 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhhhchHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 040683 116 VKRAKLALKAVKMRKEELQDEIMSGMY-------TELRELRLEKEKLVKRVGKIIDEVLMVQTEIESL 176 (251)
Q Consensus 116 ~k~v~~ALk~VKlkKeelQ~EIms~ly-------~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekL 176 (251)
+-+....|..++...+.++.+|-.-|- .....++.+...+..|...+-..+-..+++.+..
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888887777654 4667778888888888888887777777777764
No 11
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.55 E-value=4.3 Score=30.84 Aligned_cols=65 Identities=29% Similarity=0.357 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIIDEVLMVQTE---IESLKGE----KVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE---~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
.||.+.|.+..+.+.|..+--.+..++-.+++. .+.|+-. ++.+..|++.+..++.+++.++-.|
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467788888888888888877777777666653 3333332 4446666666666666666665444
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.08 E-value=39 Score=35.92 Aligned_cols=97 Identities=23% Similarity=0.312 Sum_probs=63.7
Q ss_pred HHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh-----------hhhhHHHHHHHHh
Q 040683 124 KAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE-----------KVGAEELLDMIGT 192 (251)
Q Consensus 124 k~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~-----------~~~~~~L~e~m~~ 192 (251)
.++.......+... +++..++..+..+.+.+..+.+.+-..+-....+.+.+.+. .+.+..+.+....
T Consensus 810 ~~~~~~~~~~~~~~-~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 888 (1163)
T COG1196 810 DALERELESLEQRR-ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888 (1163)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444 56778888888888888877777777777777666666655 2335566666666
Q ss_pred hHHHHHHHHHHhhhhhhHhhhhhhhhhhh
Q 040683 193 MEREYDELWERVGEIDDKMLRRETVAMSI 221 (251)
Q Consensus 193 ~E~Eyneiweki~EIeD~ilRrET~amSi 221 (251)
+++++.++-..+.++...+.+-.+....+
T Consensus 889 l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 889 LEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777766655
No 13
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.80 E-value=30 Score=34.10 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=48.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhh--hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLR--RETVAMSIGVRELCFIERECEELVKRFSREMRR 246 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilR--rET~amSiGVrEL~FIeREce~LV~rF~~Emr~ 246 (251)
...+.+++.....-|+.|.+.+.++.+.+.. .+-..|+=.+..|+-=|.+..+-+..|.+.|+.
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555577777777777777654 456788889999999999999999999998864
No 14
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.70 E-value=10 Score=31.19 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 155 LVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 155 L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
|...=+..-.+++++-.+.+.+-.....+..|...+..++..|+-+.+-+||=
T Consensus 42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33333344444555555555544444556666666666666666666666553
No 15
>PRK11637 AmiB activator; Provisional
Probab=85.59 E-value=30 Score=32.36 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=7.6
Q ss_pred eehhhHHH-HHHHHh
Q 040683 34 SVTKTLVY-AVFCIA 47 (251)
Q Consensus 34 citk~iv~-AlFcia 47 (251)
+-.+|++. +|+|.+
T Consensus 18 ~~~~~~~~~~ll~~~ 32 (428)
T PRK11637 18 FAIRPILYASVLSAG 32 (428)
T ss_pred hhhhhHHHHHHHHHH
Confidence 44577766 444433
No 16
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.75 E-value=15 Score=40.01 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHhhhchHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHH
Q 040683 93 RRLLETVSNLLKIVEEVRGGN----GDVKRAKLALKAVKMRKEELQDEI------MSGMYTELRELRLEKEKLVKRVGKI 162 (251)
Q Consensus 93 rrLLetVs~lLk~ieeVR~gn----gd~k~v~~ALk~VKlkKeelQ~EI------ms~ly~elr~lkkeke~L~~Ra~kI 162 (251)
|.|.+.+-.+...++++++.. .+++.+..-+++-..+--+.++.+ |..++..++.|++.-++.+.|+.+-
T Consensus 265 r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~ 344 (1072)
T KOG0979|consen 265 RKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKA 344 (1072)
T ss_pred HHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777622 233444444555555444444443 4577888888888888888888888
Q ss_pred HHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 040683 163 IDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSR 242 (251)
Q Consensus 163 ~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~ 242 (251)
.-+.+.++.|..+.-+-..+-+++.+-+......|++....-.+++|...-+.+- -+.+-=+.|+ .+.|+.
T Consensus 345 ~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~-----~~~l~~~kr~----~~~~~~ 415 (1072)
T KOG0979|consen 345 KKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQK-----LRDLENKKRK----LKQNSD 415 (1072)
T ss_pred HHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH-----HHHHHHHHHH----HHHHhh
Confidence 8888888888888777788899998889999999999999988888887665442 2233333333 356777
Q ss_pred HHHhh
Q 040683 243 EMRRR 247 (251)
Q Consensus 243 Emr~~ 247 (251)
.|||+
T Consensus 416 ~~~~k 420 (1072)
T KOG0979|consen 416 LNRQK 420 (1072)
T ss_pred hhhhh
Confidence 88876
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.91 E-value=61 Score=36.32 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=18.1
Q ss_pred hhhhhh----HhHHHHHHHHHHHHHHHHhh
Q 040683 222 GVRELC----FIERECEELVKRFSREMRRR 247 (251)
Q Consensus 222 GVrEL~----FIeREce~LV~rF~~Emr~~ 247 (251)
+++++| |=..|.+.....|...+...
T Consensus 425 ~~~~~~~~~~~SdEeLe~~LenF~aklee~ 454 (1486)
T PRK04863 425 RAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454 (1486)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666776 44567888888888776543
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.56 E-value=42 Score=32.91 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhhhhHhh--hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 040683 196 EYDELWERVGEIDDKML--RRETVAMSIGVRELCFIERECEELVKRFSREMR 245 (251)
Q Consensus 196 Eyneiweki~EIeD~il--RrET~amSiGVrEL~FIeREce~LV~rF~~Emr 245 (251)
.|+.+.+.+.++.+.+. ..+-..+.=.+..|.=-|.++.+-++.|...++
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444432 233455555667777788888888888877665
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=80.60 E-value=69 Score=32.46 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh--------hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683 139 SGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE--------KVGAEELLDMIGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 139 s~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~--------~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ 210 (251)
..++.++..|.++++.+.++-.++-.+.-+++.++..++.. ...++++.+.++.+.++-.++-.+++++...
T Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~ 438 (895)
T PRK01156 359 EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN 438 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666555555555544444443332111 1223444444455555555555555555444
Q ss_pred h
Q 040683 211 M 211 (251)
Q Consensus 211 i 211 (251)
+
T Consensus 439 ~ 439 (895)
T PRK01156 439 L 439 (895)
T ss_pred H
Confidence 3
No 20
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.13 E-value=34 Score=28.11 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=60.3
Q ss_pred HHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhh
Q 040683 107 EEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVG 182 (251)
Q Consensus 107 eeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~ 182 (251)
-.+|.-.|.+.-+..-+..+...+..+..||.. |.. .-.+.....++...+-.++-..+..|+.+|.- .+-
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~-l~~----~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVK-LME----ENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467788888888888888888888888888876 333 33334455566666777777788888886654 333
Q ss_pred hHHHHHHHHhhHHHHHH
Q 040683 183 AEELLDMIGTMEREYDE 199 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyne 199 (251)
.++|...+..|-.-|..
T Consensus 98 veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 98 VEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666654
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=77.46 E-value=81 Score=31.46 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=6.5
Q ss_pred ChHHHHHHHHHhh
Q 040683 115 DVKRAKLALKAVK 127 (251)
Q Consensus 115 d~k~v~~ALk~VK 127 (251)
+..++...++..+
T Consensus 586 ~~~~~~~~~~~l~ 598 (880)
T PRK03918 586 SVEELEERLKELE 598 (880)
T ss_pred hHHHHHHHHHHhh
Confidence 3445555555553
No 22
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=77.45 E-value=29 Score=27.69 Aligned_cols=91 Identities=25% Similarity=0.451 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhh--hh
Q 040683 143 TELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVA--MS 220 (251)
Q Consensus 143 ~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~a--mS 220 (251)
+.+..+...++.|...-..+...-|..+.+.+.+ +..+..+-..+..++.+|...|.+.+++-...+ -+|.. |.
T Consensus 27 ~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~---r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s-~~~l~~~L~ 102 (150)
T PF07200_consen 27 PQVQELQQEREELLAENEELAEQNLSLEPELEEL---RSQLQELYEELKELESEYQEKEQQQDELSSNYS-PDALLARLQ 102 (150)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHH
Confidence 5577788888888887777777777776666653 445556777788888888888888887743222 12211 33
Q ss_pred hhhhhhhHhHHHHHHHHHHH
Q 040683 221 IGVRELCFIERECEELVKRF 240 (251)
Q Consensus 221 iGVrEL~FIeREce~LV~rF 240 (251)
..+.+ .+-||+.|+++|
T Consensus 103 ~~~~e---~eeeSe~lae~f 119 (150)
T PF07200_consen 103 AAASE---AEEESEELAEEF 119 (150)
T ss_dssp HHHHH---HHHHHHHHC-S-
T ss_pred HHHHH---HHHHHHHHHHHH
Confidence 33333 466777776655
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.58 E-value=1.2e+02 Score=32.87 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
..|+++++.+.++-+.+-..|.+++..+
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555554443
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=75.70 E-value=46 Score=27.79 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=26.2
Q ss_pred ccCCCCcchhhhhhhhhhhhhccccccchhheecccCCcchhH---HH-HHHHHHHHHHHHHHH
Q 040683 49 SFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADY---TR-RLLETVSNLLKIVEE 108 (251)
Q Consensus 49 G~~pfq~PAiA~pv~sdv~w~kk~~~~~~E~~~~~~dHEYSd~---Tr-rLLetVs~lLk~iee 108 (251)
|++++-+||+++-++-=.. +-||+-.+||. || +|=+.|.++=+-++.
T Consensus 4 ~~~~~i~paa~~gavGY~Y-------------~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~ 54 (126)
T PF07889_consen 4 GWSSLIVPAAAIGAVGYGY-------------MWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQ 54 (126)
T ss_pred CccchhhHHHHHHHHHhee-------------eeecCCchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3555666888777765222 22445666664 44 455566666555443
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.51 E-value=82 Score=32.63 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRR 246 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~Emr~ 246 (251)
+++|.+|+......+..|-.|++.+ ++. +.-....|+.-||+.-+=+++|+..+++
T Consensus 595 ae~LaeR~e~a~d~Qe~L~~R~~~v----l~~----l~~~~P~LS~AEr~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 595 AEKLAERYEEAKDKQEKLMKRVDRV----LQL----LNSQLPVLSEAEREFKKELERMKDQLQD 650 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444332 111 1234567888888887777777777654
No 26
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.45 E-value=48 Score=31.61 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=45.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--H--HHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 139 SGMYTELRELRLEKEKLVKRVGKIIDEVLMVQT--E--IESLKGE----KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 139 s~ly~elr~lkkeke~L~~Ra~kI~d~~l~~kr--E--~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
-.|+.+.|++..+.+.|..+-.++..++-..++ + .+.|+-. ++.+..|++.+..++.+++.++-+|.-|
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 357778888888888887777777766644221 1 2343322 5557778888888888888877776544
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.19 E-value=81 Score=32.23 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=35.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhh
Q 040683 129 RKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTM 193 (251)
Q Consensus 129 kKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~ 193 (251)
....|++++ ..|-++|+..+++.+.|...........-.+..|.+.|+.. +..+..|++.+..|
T Consensus 165 e~~~l~~~v-~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 165 EVEQLREEV-ERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455443 55666666666666666666665555555555666665544 33345555444444
No 28
>PLN02678 seryl-tRNA synthetase
Probab=74.32 E-value=62 Score=31.73 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHhcCC-CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 107 EEVRGGN-GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLM 168 (251)
Q Consensus 107 eeVR~gn-gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~ 168 (251)
+-+|.+. .+.+.|..+|+.=... ..+=++|+ .++.+.|++..+.+.|..+-.++..++-.
T Consensus 5 k~ir~~~~~~~~~v~~~l~~R~~~-~~~id~il-~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 5 NLFREEKGGDPELIRESQRRRFAS-VELVDEVI-ALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHhcccccCHHHHHHHHHhhCCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445433 3456666666532221 11224444 57888888888888888887777777754
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.12 E-value=27 Score=31.92 Aligned_cols=68 Identities=26% Similarity=0.416 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhh
Q 040683 145 LRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 145 lr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrE 215 (251)
+-.|..+++.|.-|.+.+-..+-+++-|++.+ ++.+..++..+..++.++..+-..|.++.+++.+-|
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~---~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEAL---NKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777778888888877777777777764 344555666666666666666666666666665544
No 30
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.03 E-value=54 Score=27.80 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIID-----EVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKML 212 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d-----~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~il 212 (251)
.+...+.+++.+.+.|..+.++++. .......-...+...+.....|.+.+..+-++....-+++.++-+.+.
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444 222222222222222333444444444444444444444444443333
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.84 E-value=86 Score=30.85 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKML 212 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~il 212 (251)
.+....|.+.+..++++..++++.|..+.....
T Consensus 382 ~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~ 414 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLSEMLQGLRKDEL 414 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777778888888888888888877654443
No 32
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.45 E-value=31 Score=32.64 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVR 224 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVr 224 (251)
+.--.+|+++.+.+.-+|..+-.|.+|+++..---||.-+|=-++
T Consensus 176 e~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~ 220 (290)
T COG4026 176 EVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVK 220 (290)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 444667888999999899999999999998865555555444443
No 33
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=73.32 E-value=66 Score=28.51 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=85.0
Q ss_pred ecccCCcchhHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHH--HHHHHHHHHHH
Q 040683 81 FKEKDHEYADYTRRLLETVSNLLKIVEEVRGGN-GDVKRAKLALKAVKMRKEELQDEIMSGMYTELR--ELRLEKEKLVK 157 (251)
Q Consensus 81 ~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gn-gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr--~lkkeke~L~~ 157 (251)
.+++.+.+..|...+-++|..+...++-++.|+ -+++..-.=.+..--+--++..+|-..||.-+. --|...=.|..
T Consensus 8 ~~~~~~~~~~h~~~v~~~v~~~~~~f~~~~~g~~~~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~ 87 (217)
T COG1392 8 EKSPFDRLQRHLEKVAETVKLLAPAFEALRRGDYEDAEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIE 87 (217)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 467778999999999999999999999999885 444443333333333344577777777776321 11233333444
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhhh-----h-hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHH
Q 040683 158 RVGKIIDEVLMVQTEIESLKGEKV-----G-AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIER 231 (251)
Q Consensus 158 Ra~kI~d~~l~~krE~ekLlg~~~-----~-~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeR 231 (251)
.-|+|+|.+=.+- .++.-++ . =+..-+.++..-+-+..+.+-|+++++.... +.-+.-=+.|+.=+|.
T Consensus 88 ~~D~i~D~~ed~A----~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~--~~~~~~i~~eI~~~E~ 161 (217)
T COG1392 88 SQDDIADAAEDAA----KLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES--ADRLLEIIKEIEALEH 161 (217)
T ss_pred HHHHHHHHHHHHH----HHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 5555555442221 1111111 1 1223334445556666777777777766554 1112222456666777
Q ss_pred HHHHH
Q 040683 232 ECEEL 236 (251)
Q Consensus 232 Ece~L 236 (251)
||-.+
T Consensus 162 e~D~i 166 (217)
T COG1392 162 ECDDI 166 (217)
T ss_pred HhhHH
Confidence 77654
No 34
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.38 E-value=59 Score=27.51 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 143 TELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 143 ~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
..++.|..+.....+-..-+-|+....+-+... +++++..++.|++++-+|.
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~----------~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNM----------LEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666777777766665 8888888888888887764
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.14 E-value=1.5e+02 Score=31.68 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=9.8
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhh
Q 040683 185 ELLDMIGTMEREYDELWERVGEIDD 209 (251)
Q Consensus 185 ~L~e~m~~~E~Eyneiweki~EIeD 209 (251)
+|...+..++.+..++-++++++++
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~ 849 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEE 849 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433334433333
No 36
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.93 E-value=1e+02 Score=32.01 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 102 LLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 102 lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
|.+.++-.|. .=+.+..+|-.++. ++-.+++.+++.-..++.+++.+++.|..+|+++-+..=.+..-|+.|+-.
T Consensus 541 L~~a~~vlre--eYi~~~~~ar~ei~-~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 541 LSQATKVLRE--EYIEKQDLAREEIQ-RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555553 22455555555554 344566677888889999999999999999988888777777777776554
No 37
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.83 E-value=76 Score=33.22 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVA 218 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~a 218 (251)
+.-+..++.++..|++++.+=-.++++++..+.+-.+|-
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444777899999999999988889999988887776553
No 38
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=68.65 E-value=1e+02 Score=28.84 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 141 MYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
|-..+-.+..+.+.|..+...+-++.-..+.++.++-.......+|....+.-+.-|+.+..|.++..
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667777777777777777777777777665677788899999999999999999988854
No 39
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.41 E-value=60 Score=25.99 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhh
Q 040683 145 LRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERVGEIDDKML 212 (251)
Q Consensus 145 lr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EIeD~il 212 (251)
+|++=..++....--....+.+.+.+.+.++|.+. ...+.+|++.+...|........+.+.|-+.+.
T Consensus 105 ~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 105 VKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555566666677776653 456888888888888888888777777766543
No 40
>PRK09039 hypothetical protein; Validated
Probab=66.86 E-value=1.1e+02 Score=28.54 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 146 RELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 146 r~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
..|..++..+.....+---+|..+++|++.|-.. ++.|+..++..|....+...+|++++..+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q---la~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQ---LAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555554332 56666666666666666666666555443
No 41
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.33 E-value=61 Score=29.19 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 040683 147 ELRLEKEKLVKRVGKIIDEVLMVQTE 172 (251)
Q Consensus 147 ~lkkeke~L~~Ra~kI~d~~l~~krE 172 (251)
+||..-..|.+..+.|+.++-..+.|
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~e 30 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENE 30 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455554444444333
No 42
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=65.60 E-value=1.3e+02 Score=28.71 Aligned_cols=131 Identities=20% Similarity=0.336 Sum_probs=76.1
Q ss_pred ecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhch-----------------HHHHHH-------
Q 040683 81 FKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRK-----------------EELQDE------- 136 (251)
Q Consensus 81 ~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkK-----------------eelQ~E------- 136 (251)
++.+--+--+-++-|...+-.++..+.+.+.|.++++.++..++..-.+- .+|+++
T Consensus 74 lK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~ 153 (294)
T COG1340 74 LKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKA 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666777888899999999999989999999988877653221 112222
Q ss_pred -----HHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHhhhhhhhh----hHHHHHHHHhhHHHHHHH
Q 040683 137 -----IMSGMYTELRELRLEKEKLVKRVGKIIDE-------VLMVQTEIESLKGEKVG----AEELLDMIGTMEREYDEL 200 (251)
Q Consensus 137 -----Ims~ly~elr~lkkeke~L~~Ra~kI~d~-------~l~~krE~ekLlg~~~~----~~~L~e~m~~~E~Eynei 200 (251)
=.-+|++++..|+.+.+.+-.++.++.++ |+.+-++.|.+--..++ +..+-...+.+-+++..+
T Consensus 154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23456777766666666665555555554 44444444443222222 333334444444455555
Q ss_pred HHHhhhhhhHh
Q 040683 201 WERVGEIDDKM 211 (251)
Q Consensus 201 weki~EIeD~i 211 (251)
+..|-+++-.|
T Consensus 234 ~~elre~~k~i 244 (294)
T COG1340 234 QNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 43
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=65.44 E-value=38 Score=32.56 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHhhh
Q 040683 135 DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQT-EIESLK 177 (251)
Q Consensus 135 ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~kr-E~ekLl 177 (251)
.|-+..|+.++-.|+.+ +.++.|.++++++=.++. +.+..+
T Consensus 128 ~e~I~~~l~~~E~LG~e--G~Veeaq~~~~e~E~lk~~e~e~~~ 169 (319)
T KOG0796|consen 128 EEKIGKLLEKAEELGEE--GNVEEAQKAMKEVEELKAKEKEEAE 169 (319)
T ss_pred HHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888764 556777777777666654 444433
No 44
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.43 E-value=94 Score=27.18 Aligned_cols=130 Identities=20% Similarity=0.301 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 040683 99 VSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQ----DEIMSGMYTELRELRLEKEKLVKRVGKIID-------EVL 167 (251)
Q Consensus 99 Vs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ----~EIms~ly~elr~lkkeke~L~~Ra~kI~d-------~~l 167 (251)
+..+=.-+++++..|--.+.+-.=-. --+.||+-+ .+||.+.+.|+|-|+..+...+.+....-- ++.
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~-kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQE-KALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566655544444322100 012333322 367999999999999998887766544333 334
Q ss_pred HhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRR 246 (251)
Q Consensus 168 ~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~Emr~ 246 (251)
+.+.+..+|-.- .+-= ++.+ =.++..+++.+++.+...+ +.+.=.++-++..-+.|++++..
T Consensus 100 k~~~~l~~L~~L-------~~dk-nL~e-ReeL~~kL~~~~~~l~~~~--------~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 100 KTKDELKHLKKL-------SEDK-NLAE-REELQRKLSQLEQKLQEKE--------KKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred HHHHHHHHHHHH-------HHcC-Cchh-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444432221 1000 1111 2344455555544444433 22333677777777788777653
No 45
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.33 E-value=94 Score=27.13 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 040683 139 SGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKG 178 (251)
Q Consensus 139 s~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg 178 (251)
..|-.+++.|.++.+.|...-+..-..+-..+.+.+.|-.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777766666666655555555555433
No 46
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.29 E-value=74 Score=28.68 Aligned_cols=40 Identities=28% Similarity=0.472 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHH
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERE 232 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeRE 232 (251)
.+..+.+..+..||..+-+.|+++ |+|+ +|+-.|-.++.|
T Consensus 77 ~~~~~~i~r~~eey~~Lk~~in~~-----R~e~----lgl~~Lp~l~eE 116 (230)
T PF10146_consen 77 NKRQEKIQRLYEEYKPLKDEINEL-----RKEY----LGLEPLPSLEEE 116 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHH----cCCCCCCccccc
Confidence 335666677777888777777664 6666 677777666644
No 47
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.16 E-value=43 Score=32.01 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIIDEVLMVQT---EIESLKGE----KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~~kr---E~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
.||.+.|++..+.+.|..+-.++..++-.++. +.+.|+-. ++.+..|++.+..++.+.++++-+|.-|
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 37777777777777777777777666644221 23333322 4456666666666666666666666443
No 48
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=64.06 E-value=1.4e+02 Score=29.44 Aligned_cols=133 Identities=23% Similarity=0.297 Sum_probs=74.7
Q ss_pred hhhhhhhhhhhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHH
Q 040683 59 AATVASEVKLDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEI 137 (251)
Q Consensus 59 A~pv~sdv~w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EI 137 (251)
..|+..++-=.++ .-.-..+..|-.-.-.|.+.+..-+..+..+|--+++--.+ .-+..+..+++.+. +.
T Consensus 39 ~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~-~rf~ka~~~i~~~~--------~~ 109 (560)
T PF06160_consen 39 NLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADK-YRFKKAKQAIKEIE--------EQ 109 (560)
T ss_pred cCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH--------HH
Confidence 3455554442222 22223333333333467777767677777777766665332 34555555555443 33
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh--------hhhhHHHHHHHHhhHHHHHHH
Q 040683 138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE--------KVGAEELLDMIGTMEREYDEL 200 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~--------~~~~~~L~e~m~~~E~Eynei 200 (251)
|..+=.++..+..+.+.|.+...+=-.++..++..++.|.-. +.-+..|++.++.+|..+++.
T Consensus 110 l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f 180 (560)
T PF06160_consen 110 LDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEF 180 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666655555555555555555553222 555888999999998887654
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.40 E-value=2.2e+02 Score=30.81 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHhhhchHHH---HHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHhhhhh----hh
Q 040683 113 NGDVKRAKLALKAVKMRKEEL---QDE--IMSGMYTELRELRLEKEKLVKRVGKIID--EVLMVQTEIESLKGE----KV 181 (251)
Q Consensus 113 ngd~k~v~~ALk~VKlkKeel---Q~E--Ims~ly~elr~lkkeke~L~~Ra~kI~d--~~l~~krE~ekLlg~----~~ 181 (251)
..+.++++..|...+.....+ .+. .|.++..++.++++..+.|......--. .+-.++.+++++-.. +.
T Consensus 764 ~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~ 843 (1311)
T TIGR00606 764 KNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVS 843 (1311)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555333 222 2466677777777777766654331110 111122222221111 33
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHH
Q 040683 182 GAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELV 237 (251)
Q Consensus 182 ~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV 237 (251)
.++.+.+....+.++.+.+..++.++.+..+.... ++....=++.+.++|+
T Consensus 844 ~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~-----~l~~r~~le~~L~el~ 894 (1311)
T TIGR00606 844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT-----NLQRRQQFEEQLVELS 894 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 34445555555566666665555555554444333 4444445555555554
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.05 E-value=1.7e+02 Score=32.69 Aligned_cols=116 Identities=31% Similarity=0.369 Sum_probs=74.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGN-GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIID 164 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gn-gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d 164 (251)
-||.=|-|-|=|+.+ -|.-+++-|..- -....+.-||.-|--+-+.+..+| ..|-+.++-|+.+|+.+..|--+|+.
T Consensus 223 lEYtiYdrEl~E~~~-~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i-~ele~~l~~l~~ekeq~~a~~t~~~k 300 (1200)
T KOG0964|consen 223 LEYTIYDRELNEING-ELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEI-KELENKLTNLREEKEQLKARETKISK 300 (1200)
T ss_pred hhhhhhhhHHHHHHH-HHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666555444 444555555433 334556666666666555555554 45677788888899999999888887
Q ss_pred HHHHhhHHHHh----hhh--------------hhhhhHHHHHHHHhhHHHHHHHHHH
Q 040683 165 EVLMVQTEIES----LKG--------------EKVGAEELLDMIGTMEREYDELWER 203 (251)
Q Consensus 165 ~~l~~krE~ek----Llg--------------~~~~~~~L~e~m~~~E~Eyneiwek 203 (251)
.-.+++=++.. +-| -.+.|++-++-|+.++-+||.+.+.
T Consensus 301 ~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~e 357 (1200)
T KOG0964|consen 301 KKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDE 357 (1200)
T ss_pred HhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhH
Confidence 76443322222 112 2555888889999999999998763
No 51
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.89 E-value=92 Score=30.42 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=23.2
Q ss_pred HHHHHHh-hHHHHHHHHHHhhhhhhHhhhhh
Q 040683 186 LLDMIGT-MEREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 186 L~e~m~~-~E~Eyneiweki~EIeD~ilRrE 215 (251)
.||+|+= ..+.-.+|||.++-+-.+|++.|
T Consensus 288 ~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 288 MEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5666653 34455789999999999999999
No 52
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.19 E-value=15 Score=34.62 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhh-HhHHHHHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELC-FIERECEELVKRFSRE 243 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~-FIeREce~LV~rF~~E 243 (251)
++.++..+..+++.-..++.+++++||.+-|- -+- =|||-|=. .-..-++.+++.+..|
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn-NiR-IiGiPEg~e~~~k~~~~~l~~ii~e 219 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLENRSRRN-NIR-IIGIPEGEEEEGKGPENFLEEIIPE 219 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-EEE-EES----TT--HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC-cee-EEecCCCccccccCHHHHHHHHHHH
Confidence 33344444455555566788888888887542 221 24776631 1122445555555554
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.54 E-value=60 Score=35.84 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhh-------HHHHHHHHhhHHHHHHHHH
Q 040683 130 KEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGA-------EELLDMIGTMEREYDELWE 202 (251)
Q Consensus 130 KeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~-------~~L~e~m~~~E~Eyneiwe 202 (251)
-..+++| |+...+|+-+|+.-++.|+.+.|..=-.+...|.+.|--||-.+=. =.||+++-.+|++-+.+ |
T Consensus 398 ~qK~~ke-lE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dl-E 475 (1243)
T KOG0971|consen 398 HQKLQKE-LEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDL-E 475 (1243)
T ss_pred HHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHH-H
Confidence 3445555 7999999999999999999999988888888899999989873222 23555555555555543 4
Q ss_pred HhhhhhhHh----------hhhhhhhhhhhhhhh
Q 040683 203 RVGEIDDKM----------LRRETVAMSIGVREL 226 (251)
Q Consensus 203 ki~EIeD~i----------lRrET~amSiGVrEL 226 (251)
.+.+|.++. ||.|-=-.++.++||
T Consensus 476 alee~~EQL~Esn~ele~DLreEld~~~g~~kel 509 (1243)
T KOG0971|consen 476 ALEEMNEQLQESNRELELDLREELDMAKGARKEL 509 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555543 455544455666665
No 54
>PRK01156 chromosome segregation protein; Provisional
Probab=60.65 E-value=2e+02 Score=29.28 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040683 117 KRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLV 156 (251)
Q Consensus 117 k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~ 156 (251)
.++...++..+.+...+++++ ..+-.++..++.+.+.|.
T Consensus 200 ~~~~~~i~el~~~~~~l~~~i-~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 200 ENIKKQIADDEKSHSITLKEI-ERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333444444444333443333 333333333333333333
No 55
>smart00150 SPEC Spectrin repeats.
Probab=60.36 E-value=52 Score=22.48 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 87 EYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEV 166 (251)
Q Consensus 87 EYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~ 166 (251)
.|-+....|+.-+...-..+..---| +|+..|+..++..+ .++ .++...+...+.+..-++.++..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~-~d~~~~~~~~~~~~----~~~--------~e~~~~~~~v~~~~~~~~~L~~~- 67 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLG-KDLESVEALLKKHE----ALE--------AELEAHEERVEALNELGEQLIEE- 67 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHH----HHH--------HHHHHhHHHHHHHHHHHHHHHHc-
Confidence 34444555555555554433321122 57777776666432 222 22233333333343333333322
Q ss_pred HHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 167 LMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 167 l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
| ......+..+++.+...|+.|...+.+-.
T Consensus 68 -----------~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~ 97 (101)
T smart00150 68 -----------G-HPDAEEIEERLEELNERWEELKELAEERR 97 (101)
T ss_pred -----------C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22356688889999999999988876543
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.28 E-value=2.3e+02 Score=33.16 Aligned_cols=118 Identities=22% Similarity=0.322 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHh---------------------hhchHHHHHHHHHhHHHHHHHHHH
Q 040683 93 RRLLETVSNLLKIVEEVRGG-NGDVKRAKLALKAV---------------------KMRKEELQDEIMSGMYTELRELRL 150 (251)
Q Consensus 93 rrLLetVs~lLk~ieeVR~g-ngd~k~v~~ALk~V---------------------KlkKeelQ~EIms~ly~elr~lkk 150 (251)
+..++.++..--.+|..|.+ .++.+++-..+..+ |-+.++++.|+ .+.-++.|.+..
T Consensus 1392 qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~El-d~aq~e~r~~~t 1470 (1930)
T KOG0161|consen 1392 EEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAEL-DAAQRELRQLST 1470 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHH
Confidence 34456666666677777777 67777666655444 33334444443 344555565555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH-------Hhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 151 EKEKLVKRVGKIIDEVLMVQTEI-------ESLKGE----KVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 151 eke~L~~Ra~kI~d~~l~~krE~-------ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
+.-+|..+-++..+++-.++|+- ..|... +..+.+|+...-.+|.+-.+++..++|.|+..
T Consensus 1471 el~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66566656555555554444443 333333 33388888889999999999999999998853
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.03 E-value=1.4e+02 Score=27.34 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 132 ELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 132 elQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
.+++.|.++|...+..|+.....|.+...
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~ 173 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLE 173 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556555555554433
No 58
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=57.80 E-value=84 Score=31.91 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=59.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 132 ELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 132 elQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
..|.-.|-..|+ +|..|-+.++|++.++-+.|..=..+.=||.+-.-...-+.|+++++++|..-..|.+-+.-.=
T Consensus 393 ~hQRkfL~AI~~-fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~ 468 (489)
T KOG3684|consen 393 KHQRKFLQAIHQ-FRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLP 468 (489)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 467778888887 9999999999999999999987666655665433366677888999999888888777665443
No 59
>PRK11637 AmiB activator; Provisional
Probab=57.77 E-value=1.2e+02 Score=28.51 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=9.1
Q ss_pred HHHHHHHhhhchHHHHHHH
Q 040683 119 AKLALKAVKMRKEELQDEI 137 (251)
Q Consensus 119 v~~ALk~VKlkKeelQ~EI 137 (251)
+..-|+.++-+..+++++|
T Consensus 45 ~~~~l~~l~~qi~~~~~~i 63 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSV 63 (428)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443
No 60
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.22 E-value=81 Score=29.92 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=23.2
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhh
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDKMLRRETV 217 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~ilRrET~ 217 (251)
|-+++..+|.+|+++++++.+++--.+|-|-|
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777778888888887777777776654
No 61
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=3 Score=37.60 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhhccCC---CCcchhhhhhhhhhhhhcc-ccccchhhe-ecccCCcchhHHHHH
Q 040683 36 TKTLVYAVFCIAVSFSP---FKVPAIAATVASEVKLDNK-GREIETEVV-FKEKDHEYADYTRRL 95 (251)
Q Consensus 36 tk~iv~AlFciaiG~~p---fq~PAiA~pv~sdv~w~kk-~~~~~~E~~-~~~~dHEYSd~TrrL 95 (251)
--|.-.+.|.-++|-|. +++-++|..++. |+.. .|+..+|.- +..-+-+|++|.+++
T Consensus 132 RHPsY~g~flw~~gtq~~L~npis~v~f~~V~---w~ff~~Ri~~EE~~Li~fFg~~Y~eY~kkV 193 (201)
T KOG2628|consen 132 RHPSYVGFFLWAAGTQTMLCNPISLVAFLLVV---WRFFADRIKEEEKYLISFFGSSYVEYAKKV 193 (201)
T ss_pred eCchHHHHHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHhhHHHHHHHHhC
Confidence 34776799999999998 777666666555 9999 566555555 777789999999875
No 62
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.13 E-value=83 Score=23.84 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 152 KEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 152 ke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
.+.|..|....+|..--.+.|.+.|..+ .+..+.|.+....+..+++...+||+-+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777888888888888887766 3446677777777778888887777543
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.12 E-value=1.3e+02 Score=26.18 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=70.5
Q ss_pred ecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchH--HHHHH----HHHhHHHHHHHHHHHHHH
Q 040683 81 FKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKE--ELQDE----IMSGMYTELRELRLEKEK 154 (251)
Q Consensus 81 ~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKe--elQ~E----Ims~ly~elr~lkkeke~ 154 (251)
....++.|.+.+|+|--+-..|=++-+-+-....-+.+++.-|+.|.-.-. +.+.+ -...+-..++.|......
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888766666666666666666666676666666643222 22211 223344456777777777
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 155 LVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 155 L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
...||+.--..+-++.++++. |++.+......|..+..-++
T Consensus 188 aE~Rae~aE~~v~~Le~~id~----------le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 188 AENRAEFAERRVKKLEKEIDR----------LEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666666665 66666666666666665443
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.93 E-value=3.4e+02 Score=30.80 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=19.9
Q ss_pred HHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040683 121 LALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVK 157 (251)
Q Consensus 121 ~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~ 157 (251)
.-|+.+..+..++. +||..+-+.+..|+++++...+
T Consensus 300 kkLe~tE~nL~rI~-diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 300 RQLAAEQYRLVEMA-RELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444553 3446666666777666666544
No 65
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.67 E-value=90 Score=30.69 Aligned_cols=40 Identities=25% Similarity=0.480 Sum_probs=28.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEEL 133 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeel 133 (251)
++|++.+.+|+..|..|=.+||++|+ +++-+-|+..+-.|
T Consensus 209 ~~L~~~sd~Ll~kVdDLQD~VE~LRk--------DV~~RgvRp~~~ql 248 (424)
T PF03915_consen 209 KKLSEESDRLLTKVDDLQDLVEDLRK--------DVVQRGVRPSPKQL 248 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHcCCcCCHHHH
Confidence 68899999999999999999999985 35666666555443
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.43 E-value=1.7e+02 Score=27.30 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=58.5
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHH
Q 040683 129 RKEELQDEIMSGMYTELRELRLEKEKLVKRVGKII----DEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDEL 200 (251)
Q Consensus 129 kKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~----d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eynei 200 (251)
++.++-++|+..|-.-.-.|+.|...|+...+.|= ++.-.++.+...+... +..++.+.+.+..++..-+..
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666678888888998888873 3555555554444333 555777777777777777777
Q ss_pred HHHhhhhhhHhhhhhh
Q 040683 201 WERVGEIDDKMLRRET 216 (251)
Q Consensus 201 weki~EIeD~ilRrET 216 (251)
-++..++...|.--|.
T Consensus 245 ~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 245 TNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777665554
No 67
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=56.31 E-value=83 Score=29.60 Aligned_cols=41 Identities=29% Similarity=0.445 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 135 DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 135 ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
+|-.++||.|+-+++ .-++|-|-=++-++..+.|.+.||+.
T Consensus 112 gekI~~Ly~e~~~vk----~~qkrLdq~L~~I~sqQ~ELE~~L~~ 152 (254)
T KOG2196|consen 112 GEKISGLYNEVVKVK----LDQKRLDQELEFILSQQQELEDLLDP 152 (254)
T ss_pred cHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999998765 55788888899999999999999987
No 68
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.95 E-value=1.1e+02 Score=25.04 Aligned_cols=88 Identities=26% Similarity=0.366 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhh
Q 040683 138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETV 217 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~ 217 (251)
|..|-.++.+|+.+...|. .++-.++.|... |...--.++|...+..++.+...+-.|+..+.. .+.
T Consensus 74 l~~ld~ei~~L~~el~~l~-------~~~k~l~~eL~~-L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~-----~~~ 140 (169)
T PF07106_consen 74 LAELDAEIKELREELAELK-------KEVKSLEAELAS-LSSEPTNEELREEIEELEEEIEELEEKLEKLRS-----GSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCC
Confidence 3334444444444444433 344445555555 334445677888888888888888888877654 222
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHH
Q 040683 218 AMSIGVRELCFIERECEELVKRF 240 (251)
Q Consensus 218 amSiGVrEL~FIeREce~LV~rF 240 (251)
. +--.|..-++++-..+.+.+
T Consensus 141 ~--vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 141 P--VSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred C--CCHHHHHHHHHHHHHHHHHH
Confidence 2 33455555555554444433
No 69
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.95 E-value=1.2e+02 Score=25.35 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.6
Q ss_pred hhhhhhcc
Q 040683 64 SEVKLDNK 71 (251)
Q Consensus 64 sdv~w~kk 71 (251)
||+||.-|
T Consensus 31 sD~M~vTr 38 (126)
T PF07889_consen 31 SDLMFVTR 38 (126)
T ss_pred hHHHHHHH
Confidence 44444444
No 70
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.86 E-value=1.1e+02 Score=31.81 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh-hhhhHHHHHHHHhhHHHHHHHHH
Q 040683 129 RKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE-KVGAEELLDMIGTMEREYDELWE 202 (251)
Q Consensus 129 kKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~-~~~~~~L~e~m~~~E~Eyneiwe 202 (251)
++.++-.+|+++-..-+.+.+.+.+.|...-..--.+.-..+++.++++.. ..--++|++....++++..++++
T Consensus 490 ~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~ 564 (771)
T TIGR01069 490 QRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKL 564 (771)
T ss_pred HHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444444444444333333333333333333333322 11233344444444444444443
No 71
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.69 E-value=2.3e+02 Score=29.94 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 117 KRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDE 165 (251)
Q Consensus 117 k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~ 165 (251)
.....-++..--+-+.|+.|| +.|-+++.+++++.+.|..+-+.+-..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~-~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEEN-SELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444333344444443 334455555555555555554444433
No 72
>PF11642 Blo-t-5: Mite allergen Blo t 5; InterPro: IPR020306 This entry contains mite allergens Der p 5 [] and Blo t 5 [], belonging to the mite group 5 allergen family, as well Blo t 21 [] belonging to group 21. Mite allergens causes an allergic reaction in humans []. Common symptoms of mite allergy are bronchial asthma, allergic rhinitis and conjunctivitis. Der p 5 binds to IgE.; PDB: 3MQ1_E 2JMH_A 2JRK_A.
Probab=55.59 E-value=12 Score=31.51 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=45.7
Q ss_pred hHHHHhhhhh--hhhhHHHHHHHHhhHHHHHHHHH-HhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHH----HHHHHHHH
Q 040683 170 QTEIESLKGE--KVGAEELLDMIGTMEREYDELWE-RVGEIDDKMLRRETVAMSIGVRELCFIERECE----ELVKRFSR 242 (251)
Q Consensus 170 krE~ekLlg~--~~~~~~L~e~m~~~E~Eyneiwe-ki~EIeD~ilRrET~amSiGVrEL~FIeREce----~LV~rF~~ 242 (251)
+.|.|.||-. .++|.++|..+-.+-.+|+++=. +=.++.++|+|-=|++..+=--=.-|+|||.. +++.+||-
T Consensus 12 RnEFD~LLv~~~~~~~~k~E~~Ll~Ls~Qi~~LEktksK~~k~~IlrEi~~~~~~i~ga~~~lerElkRtDLnilEkfNf 91 (118)
T PF11642_consen 12 RNEFDRLLVETAEENFHKGEQFLLHLSHQIAELEKTKSKEEKEQILREIDIIIAFIEGARGVLERELKRTDLNILEKFNF 91 (118)
T ss_dssp ---SS--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHhcH
Confidence 4566776655 44555555555555555555432 23345578888766654443333468999975 68999998
Q ss_pred HHHhhh
Q 040683 243 EMRRRS 248 (251)
Q Consensus 243 Emr~~s 248 (251)
|.-+++
T Consensus 92 E~al~~ 97 (118)
T PF11642_consen 92 EEALAT 97 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 73
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.87 E-value=1.7e+02 Score=32.99 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=18.3
Q ss_pred hchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 128 MRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIID 164 (251)
Q Consensus 128 lkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d 164 (251)
.+..+||..||+=---.++.=+.+.+++..+-|+...
T Consensus 885 ~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~ 921 (1293)
T KOG0996|consen 885 ARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEA 921 (1293)
T ss_pred HHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHH
Confidence 5666666666653333334444444444444444433
No 74
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=53.72 E-value=12 Score=29.14 Aligned_cols=18 Identities=33% Similarity=0.743 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhHh
Q 040683 194 EREYDELWERVGEIDDKM 211 (251)
Q Consensus 194 E~Eyneiweki~EIeD~i 211 (251)
..+|+++.+|+|+||+++
T Consensus 11 ~~d~~~i~~rLd~iEeKV 28 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKV 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378999999999999875
No 75
>PRK10869 recombination and repair protein; Provisional
Probab=53.62 E-value=2.4e+02 Score=28.00 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHh---hhchHHH--HHHHHHhHHHHHHHHHHHHHH
Q 040683 91 YTRRLLETVSNLLKIVEEVRGG---NGDVKRAKLALKAV---KMRKEEL--QDEIMSGMYTELRELRLEKEK 154 (251)
Q Consensus 91 ~TrrLLetVs~lLk~ieeVR~g---ngd~k~v~~ALk~V---KlkKeel--Q~EIms~ly~elr~lkkeke~ 154 (251)
+..++.+.+...+..+ .+ +|-...+..|++.+ .---..+ -.+-|+.+|..+-++..+.+.
T Consensus 219 n~e~i~~~~~~~~~~L----~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 219 NSGQLLTTSQNALQLL----ADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHHHh----cCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655 22 23233344444433 1111122 233455566666655555543
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.53 E-value=1.3e+02 Score=30.82 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhh----hhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 141 MYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKV----GAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~----~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
|......|+++...|.++.+..-.+.-..+.+.++|-...+ ..+.|.+..+.+..++.+.-.||.+.|+-|
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666554421 234444445555555555555555555443
No 77
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=53.05 E-value=12 Score=29.45 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhhHhh
Q 040683 195 REYDELWERVGEIDDKML 212 (251)
Q Consensus 195 ~Eyneiweki~EIeD~il 212 (251)
++|+++.+|+|+||+++-
T Consensus 15 ~d~~~i~~rLD~iEeKVE 32 (77)
T PRK01026 15 KDFKEIQKRLDEIEEKVE 32 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 579999999999998753
No 78
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.78 E-value=1.6e+02 Score=25.83 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=9.5
Q ss_pred hHhHHHHHHHHHHHH
Q 040683 227 CFIERECEELVKRFS 241 (251)
Q Consensus 227 ~FIeREce~LV~rF~ 241 (251)
+=|..+|+..--+|.
T Consensus 169 ~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 169 EALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777666664
No 79
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=51.63 E-value=1.9e+02 Score=26.22 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 040683 90 DYTRRLLETVSNLLKIVE 107 (251)
Q Consensus 90 d~TrrLLetVs~lLk~ie 107 (251)
+|=+.++..+..++.-+.
T Consensus 79 ~YE~e~~~~L~~~i~d~d 96 (254)
T PF03194_consen 79 GYEREFLRYLQRLIRDCD 96 (254)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 477777777666655443
No 80
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=51.41 E-value=3.3e+02 Score=28.97 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh-------cCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 88 YADYTRRLLETVSNLLKIVEEVR-------GGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 88 YSd~TrrLLetVs~lLk~ieeVR-------~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
...+++.-++..-.=||+-.+++ +.+++...... |+-..-.-..||.| -.++..|+..|++..+.++-|.+
T Consensus 68 e~q~~~~ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E-~er~~~El~~lr~~lE~~q~~~e 145 (775)
T PF10174_consen 68 ENQKAQEEIQALQEELRAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAE-RERLQRELERLRKTLEELQLRIE 145 (775)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555554444456655555 34444444333 44333334455554 56666667777777777777766
Q ss_pred HHHHHHHHhhHHHHhhhh
Q 040683 161 KIIDEVLMVQTEIESLKG 178 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg 178 (251)
.+=-..-.+.-++++|+.
T Consensus 146 ~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 146 TQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 665555556666666554
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.19 E-value=1.4e+02 Score=27.70 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 040683 118 RAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIES 175 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ek 175 (251)
++...+.....+.++++.+.. ..|.+...+..+.-.+.+.-+.+-.+...++.+.++
T Consensus 75 ~l~~el~~le~e~~~l~~eE~-~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 75 ELDQELEELEEELEELDEEEE-EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444 444444444444444444444444444444444444
No 82
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=51.00 E-value=14 Score=28.76 Aligned_cols=19 Identities=26% Similarity=0.657 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhhHhh
Q 040683 194 EREYDELWERVGEIDDKML 212 (251)
Q Consensus 194 E~Eyneiweki~EIeD~il 212 (251)
..+|+++.+|+|+||+++-
T Consensus 11 ~~~~~~i~~rLd~iEeKvE 29 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVE 29 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998763
No 83
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=49.97 E-value=1.2e+02 Score=23.71 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh--hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhh
Q 040683 148 LRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE--KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAM 219 (251)
Q Consensus 148 lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~--~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~am 219 (251)
|+.-.+.|.++..++-...-+...+..+++.. +.++-.+-.+.-..++..+.+..-..-++....+-+|...
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~ 79 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQS 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334443333333333333333333333 5566667777777888888888888888888888777643
No 84
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.29 E-value=1.1e+02 Score=23.09 Aligned_cols=72 Identities=26% Similarity=0.335 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
....++.+|-.+...|+...+..--+-=.+.+++-++.+.++..+.|-+.+..+-++-..+-..+.++++.+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888877776666666666666665565677777777777777777777777777654
No 85
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.26 E-value=2.6e+02 Score=31.34 Aligned_cols=71 Identities=30% Similarity=0.362 Sum_probs=47.8
Q ss_pred HhcCCCChHHHHHHHHHhhhchHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 109 VRGGNGDVKRAKLALKAVKMRKEELQDEI------MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 109 VR~gngd~k~v~~ALk~VKlkKeelQ~EI------ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
|++-.+|++.+...|+.-|.+--.+-.|| +.-+-++......++.+|..+..++--+..++..+.++|+++
T Consensus 859 v~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 859 VDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 33444455555455544444444444555 344556666677788889999999999999999999998877
No 86
>PF14992 TMCO5: TMCO5 family
Probab=47.73 E-value=2.3e+02 Score=26.80 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 92 TRRLLETVSNLLKIVEEVRGGN----GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVL 167 (251)
Q Consensus 92 TrrLLetVs~lLk~ieeVR~gn----gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l 167 (251)
-|+|-|.=.++|.-|.+--+-. .++....-- +.-.+=.+-|.+.--+.+++|..+.++|.+.+.-.+.-+.
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~-----~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~ 87 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHI-----ADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQ 87 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----cCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhh
Confidence 4677777777777776532211 111111111 1122333556677778899999999999999987777778
Q ss_pred HhhHHHHhh---hhh------------hhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 168 MVQTEIESL---KGE------------KVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 168 ~~krE~ekL---lg~------------~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
..+++++.- .+- +.....+.+++-..|++..++|.-.+
T Consensus 88 elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~ 140 (280)
T PF14992_consen 88 ELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQ 140 (280)
T ss_pred hhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888876631 211 34466677777777777777765433
No 87
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=47.31 E-value=1.1e+02 Score=22.38 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=38.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHH--Hhhhhh-------hhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 138 MSGMYTELRELRLEKEKLVKRV---GKIIDEVLMVQTEI--ESLKGE-------KVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra---~kI~d~~l~~krE~--ekLlg~-------~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
++.+...+..+...+..|.... +-.++++-.+.-+. =+..|. .+=+..|++++..++.+.+.+-..+.
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777766666664433 33333333332220 011222 22256666666666666666666666
Q ss_pred hhhhHhhh
Q 040683 206 EIDDKMLR 213 (251)
Q Consensus 206 EIeD~ilR 213 (251)
.++..+..
T Consensus 87 ~l~~~l~~ 94 (106)
T PF01920_consen 87 YLEKKLKE 94 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 88
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.27 E-value=2.6e+02 Score=26.66 Aligned_cols=106 Identities=21% Similarity=0.369 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCChHHHHHHHHHhhhchHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 93 RRLLETVSNLLKIVEEVR---GGNGDVKRAKLALKAVKMRKEELQDEI------MSGMYTELRELRLEKEKLVKRVGKII 163 (251)
Q Consensus 93 rrLLetVs~lLk~ieeVR---~gngd~k~v~~ALk~VKlkKeelQ~EI------ms~ly~elr~lkkeke~L~~Ra~kI~ 163 (251)
+.|+..++.|=+-++... .-|+.++++.+=.+++|.+-.++-.+| ....|-+|-++-.+.|.+-++||..-
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666444443333 356666666666666665555554443 25667777777777777777777766
Q ss_pred HHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 164 DEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 164 d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
-+.++.....+. +-+-+.+...++.++-.+|-.+.
T Consensus 214 e~~ve~~~~~~e----------~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 214 EEFVELSKKIDE----------LHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555554 34444444444444444444333
No 89
>PLN02320 seryl-tRNA synthetase
Probab=47.04 E-value=1.3e+02 Score=30.20 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIIDEVLM--VQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~--~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
.+|.+.|.+..+.+.|..+-.++..++-. .+.+.+.|+-. ++.+..|++.+..++.+.++++-+|-
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iP 168 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIP 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35555566666666665555555555432 11122333221 44566666666666666666666553
No 90
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=46.99 E-value=2.4e+02 Score=30.46 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=29.1
Q ss_pred HhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 040683 191 GTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSRE 243 (251)
Q Consensus 191 ~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~E 243 (251)
..+++||.+|.++|.++++.+.-..-+ .-.|-.|..++.+.|..+
T Consensus 449 ~kl~~E~~eL~~~I~~l~~iL~~~~~l--------~~vi~~EL~eik~kygd~ 493 (957)
T PRK13979 449 VAFEKEYKELEKLIKKLTKILSSEKEL--------LKVIKKELKEVKEKYGDE 493 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHHHHHHHhCCC
Confidence 456777777777777777766544322 345666777777777643
No 91
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.85 E-value=3.6e+02 Score=28.12 Aligned_cols=121 Identities=24% Similarity=0.351 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHhhhchHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHh
Q 040683 113 NGDVKRAKLALKAVKMRKEELQDEIMS------GMYTELRELRLEKEKLVKRVGKIID-----------------EVLMV 169 (251)
Q Consensus 113 ngd~k~v~~ALk~VKlkKeelQ~EIms------~ly~elr~lkkeke~L~~Ra~kI~d-----------------~~l~~ 169 (251)
..|+++++.-|...+.--.||...|.+ .+=.+|..|+++-|.|+.|.-.+.- +-..+
T Consensus 424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~ 503 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQ 503 (697)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777777777552 3445666777777766664333221 11222
Q ss_pred hHHHHhhhhh-------------h----------hhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhh
Q 040683 170 QTEIESLKGE-------------K----------VGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVREL 226 (251)
Q Consensus 170 krE~ekLlg~-------------~----------~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL 226 (251)
+.+.|+-|-. + +-.+-+-.|...||.|+..+---+-.-||++...|-=+ ++|
T Consensus 504 R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-----~~l 578 (697)
T PF09726_consen 504 RASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL-----QEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 2333333322 0 11233667788888888888777777777766655433 334
Q ss_pred hHh----HHHHHHHHH
Q 040683 227 CFI----ERECEELVK 238 (251)
Q Consensus 227 ~FI----eREce~LV~ 238 (251)
.-. +.|+|.|+-
T Consensus 579 r~~~~e~~~~~e~L~~ 594 (697)
T PF09726_consen 579 RKYEKESEKDTEVLMS 594 (697)
T ss_pred HHHHhhhhhhHHHHHH
Confidence 333 456776654
No 92
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.63 E-value=5.6e+02 Score=30.28 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=77.8
Q ss_pred CCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHH
Q 040683 112 GNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELL 187 (251)
Q Consensus 112 gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~ 187 (251)
=.||+.+++.+|+.--..+.++|+. |..+.+.+++|..+.+..+-.-+++.++.+.+.|...-|-.. +..++-++
T Consensus 1609 le~di~elE~~ld~ank~~~d~~K~-lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~ 1687 (1930)
T KOG0161|consen 1609 LEGDINELEIQLDHANKANEDAQKQ-LKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALE 1687 (1930)
T ss_pred hhcchHHHHHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998 478889999999999999999999999999999888876665 44456666
Q ss_pred HHHHhhHHHHHHHHHHhhh
Q 040683 188 DMIGTMEREYDELWERVGE 206 (251)
Q Consensus 188 e~m~~~E~Eyneiweki~E 206 (251)
-.-...|.+++++-++|.+
T Consensus 1688 Rarr~aE~e~~E~~e~i~~ 1706 (1930)
T KOG0161|consen 1688 RARRQAELELEELAERVNE 1706 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666777777777777665
No 93
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.40 E-value=3.2e+02 Score=30.44 Aligned_cols=104 Identities=26% Similarity=0.250 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHH
Q 040683 87 EYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEI------MSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 87 EYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EI------ms~ly~elr~lkkeke~L~~Ra~ 160 (251)
+|-+||+..-+.--..=+..+++|+=+-+++.. --++++|.+++ ++++..++++-........+.-+
T Consensus 242 ~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi-------~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~ 314 (1072)
T KOG0979|consen 242 EYKKHDREYNAYKQAKDRAKKELRKLEKEIKPI-------EDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLK 314 (1072)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566554443333333334443333222222 23445555533 57788888887777777777777
Q ss_pred HHHHHHHHhhHHHHhhhhhhh----hhHHHHHHHHhhHHHH
Q 040683 161 KIIDEVLMVQTEIESLKGEKV----GAEELLDMIGTMEREY 197 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg~~~----~~~~L~e~m~~~E~Ey 197 (251)
.|=|++.+++.+.+.|.+..+ .+++.-+++.....+-
T Consensus 315 ~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 315 EIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999888833 2666666666666553
No 94
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=46.30 E-value=1.7e+02 Score=24.26 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=84.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhh---hchHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVK---MRKEELQDEIMSGMYTEL--RELRLEKEKLVKRVG 160 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VK---lkKeelQ~EIms~ly~el--r~lkkeke~L~~Ra~ 160 (251)
-.+-++.+.+.+.+..+...++....| |..+++..++.++ -+-.++..+|+..||... ---|...-.|...-|
T Consensus 11 ~~~~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD 88 (214)
T PF01865_consen 11 KKFFDHFEEVAEASVLLAELLEAYLEG--DYEDVEELLEEIKELEHEADEIKREIREELYKSFITPFDREDILRLISSLD 88 (214)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 456788888888888888999988875 4566666655554 445678888888888732 012233445666666
Q ss_pred HHHHHHHHhhHHHHhhhh--hhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHH
Q 040683 161 KIIDEVLMVQTEIESLKG--EKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVK 238 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg--~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~ 238 (251)
+|+|.+-.+-....-.-. ..+--..+.+.+...-+.=..+-+-+..+.+... -++...-=++++..+|++|..+-.
T Consensus 89 ~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~~~--~~~~~~~~~~~I~~~E~~~D~l~~ 166 (214)
T PF01865_consen 89 DIADYIEDAAKRLSLYKVEIPEELREEFQELAEIVVEAIEELVEAIEELKSILE--SSFEEKELIKEINKLEEEADKLYR 166 (214)
T ss_dssp HHHHHHHHHHHHHHHHT----CCGHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--S-HCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444331110 0111122333333333333333333333332110 111111235677788888888777
Q ss_pred HHHHHHHh
Q 040683 239 RFSREMRR 246 (251)
Q Consensus 239 rF~~Emr~ 246 (251)
+..+.+-.
T Consensus 167 ~~~~~lf~ 174 (214)
T PF01865_consen 167 RLIKKLFS 174 (214)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666544
No 95
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.10 E-value=1.5e+02 Score=23.66 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=49.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh-----hhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 136 EIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE-----KVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 136 EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~-----~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
.-+..+-.++.++....+.+..+.+.|... ++.|..+.-.. +.-+..+-+......++..++|+.+-
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~---~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISER---LKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 556677778888888888888888888664 45677776554 34466777777778888888998763
No 96
>PRK04406 hypothetical protein; Provisional
Probab=45.44 E-value=1.3e+02 Score=22.79 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040683 182 GAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFS 241 (251)
Q Consensus 182 ~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~ 241 (251)
.|..+++|+..||....-.-.-|+++.+.+.+-- ++|.-.+|.|..|+.|+.
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq--------~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQ--------LLITKMQDQMKYVVGKVK 56 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3667899999999999888889999999887754 566778899999988873
No 97
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=45.34 E-value=12 Score=36.26 Aligned_cols=78 Identities=28% Similarity=0.316 Sum_probs=54.5
Q ss_pred cccccceeeehhhH--HHHHHHHhhccCCCCcchhhhhhhhhhhhhccccccchhheecccCCcchhHHHHHHHHHHHHH
Q 040683 26 KGKTESAISVTKTL--VYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLL 103 (251)
Q Consensus 26 ~~~~~~~icitk~i--v~AlFciaiG~~pfq~PAiA~pv~sdv~w~kk~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lL 103 (251)
+-++|++..+++++ +||+-|.+..+++||.|-+++- +.|+.- +-.-=...--.+|
T Consensus 29 ~l~tg~~~~v~~~wr~~y~~~c~~~~~~~~~~~~~~~a----l~~D~g-------------------llmg~~~~~d~~l 85 (355)
T KOG2132|consen 29 KLNTGHWSFVDRVWRRLYAIACLAKALIEFQAPLVYAA----LKLDMG-------------------LLMGNIGLGDSLL 85 (355)
T ss_pred hhccCccccCCchHHHHHHHHHHHHHHhhcccchhHHH----HhhCHH-------------------HHhhchhcchHHH
Confidence 56788999999999 9999999999999999943321 124433 0000011134578
Q ss_pred HHHHHHhcCCCChHHHHHHHHHh
Q 040683 104 KIVEEVRGGNGDVKRAKLALKAV 126 (251)
Q Consensus 104 k~ieeVR~gngd~k~v~~ALk~V 126 (251)
+++-|.+.|--+-+.+-.|+.+=
T Consensus 86 ~va~~~~~~~~~~~~~~~~~~~~ 108 (355)
T KOG2132|consen 86 KVASELKFGYYSDKPAAVALNFK 108 (355)
T ss_pred HHHHHhhccCcccchhhhhccCC
Confidence 88888888888888887777654
No 98
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.09 E-value=68 Score=24.45 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 118 RAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
.++.||.-|..+|.++-.+=++.|..-.+.|..+-..|..+.+
T Consensus 57 ~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 57 QLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999888877643
No 99
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=44.47 E-value=2.5e+02 Score=25.58 Aligned_cols=113 Identities=23% Similarity=0.341 Sum_probs=77.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHhcCCC------ChHHHHHHHHHhhhchHHHHHHHHHhHHH-----HHHHHHHHH
Q 040683 84 KDHEYADYTRRLLETVSNLLKIVEEVRGGNG------DVKRAKLALKAVKMRKEELQDEIMSGMYT-----ELRELRLEK 152 (251)
Q Consensus 84 ~dHEYSd~TrrLLetVs~lLk~ieeVR~gng------d~k~v~~ALk~VKlkKeelQ~EIms~ly~-----elr~lkkek 152 (251)
-+-.|..|++-|+..+..|-+.|++-|=|-- -.+-+..--+++-+|--=++-+|++..|+ -++.++..+
T Consensus 104 l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L 183 (238)
T PF14735_consen 104 LERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRKIRDHL 183 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHHHHH
Confidence 3456889999999999999999999886642 23344555677778888888899999996 466666666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhh
Q 040683 153 EKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGE 206 (251)
Q Consensus 153 e~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~E 206 (251)
+.-.+++..=...+...=++++. +...++.+=++|..+...|+.
T Consensus 184 ~~~~~~~e~~~~~a~~~L~~Ye~----------lg~~F~~ivreY~~l~~~ie~ 227 (238)
T PF14735_consen 184 EEAIEELEQELQKARQRLESYEG----------LGPEFEEIVREYTDLQQEIEN 227 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------ccHhHHHHHHHHHHHHHHHHH
Confidence 55555555444444444445554 223366777888888766543
No 100
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.38 E-value=3.1e+02 Score=30.69 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVR 224 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVr 224 (251)
...+-.+...|++.|.+-++|.+++.++||.|-+- ..-+|||+
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~--f~~~igv~ 766 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKG--FCRRIGVR 766 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhcCee
Confidence 44466788899999999999999999999999763 45578887
No 101
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.28 E-value=3.9e+02 Score=27.53 Aligned_cols=119 Identities=24% Similarity=0.281 Sum_probs=66.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCC----CCh--------HHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGN----GDV--------KRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKE 153 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gn----gd~--------k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke 153 (251)
--|=|..|.|=+.=+.|---|...|++- |.+ ..+..+|+...-.+.+++.+| .+|-.|+-+|++..+
T Consensus 52 A~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei-~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 52 AVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEI-TKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 3466777777666666666666666543 333 345666777777777777765 456666666655555
Q ss_pred HHHHHHH-------HHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 154 KLVKRVG-------KIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 154 ~L~~Ra~-------kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
+..+.+. .-....-.++-|+..+++ .+..|++....+-.+-..||.-|+.|=
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~kr---r~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKR---RIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4433221 111222223333333332 355566777777667666666666553
No 102
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.66 E-value=3e+02 Score=25.99 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRR 214 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRr 214 (251)
+.-++.+.+.+...|+++.++-++|.+|=+++.+-
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888999999999888888777766543
No 103
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.30 E-value=2.1e+02 Score=24.12 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=53.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHH
Q 040683 135 DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYD 198 (251)
Q Consensus 135 ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyn 198 (251)
+.||..-..++...+.+-+.+..--+..-.++-.++.+++.|-+.-...+.|-..+..++.+|.
T Consensus 5 ~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 5 DKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4688888888877887777777777778888888999999988877778888888888888887
No 104
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.08 E-value=2e+02 Score=23.85 Aligned_cols=120 Identities=19% Similarity=0.268 Sum_probs=57.6
Q ss_pred ecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 81 FKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 81 ~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
|...=|+|+.|+..+=++...=-+..-+.-.-+.+.......+..++.. ...+.+=+..+=.++.++....+.+.++-+
T Consensus 109 l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~-~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 109 LGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKAS-GKNRQDKVEQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444477777766655554443333322222222222222222211111 011122333444555556655556666555
Q ss_pred HHHHHHHHhhHHHHhhhhh-----hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 161 KIIDEVLMVQTEIESLKGE-----KVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg~-----~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
.|... ++.|.++.--. +..+...-+..-...++--++|+.+
T Consensus 188 ~is~~---~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 188 EISEN---IKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55443 45555553333 3346666666666777777788764
No 105
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=40.09 E-value=2.4e+02 Score=24.19 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683 141 MYTELRELRLEKEKLVKRVGK------IIDEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~k------I~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ 210 (251)
|+.=+|-+.-=|..|..|... ....+.+++...+||.+. .+++..++..+..+|......-.+.++|.+.
T Consensus 93 L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~ 172 (216)
T cd07627 93 LDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSEL 172 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555533 334566667777777653 4567777777777777777777777776665
Q ss_pred hh
Q 040683 211 ML 212 (251)
Q Consensus 211 il 212 (251)
+.
T Consensus 173 ~k 174 (216)
T cd07627 173 IK 174 (216)
T ss_pred HH
Confidence 54
No 106
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.05 E-value=5.8e+02 Score=28.57 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREM 244 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~Em 244 (251)
++.+-+.++..-++||++-+.+.+++..|-+ +=.++-+++|....+=+++++++
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~--------~k~~~d~l~k~I~~~~~~~~~~~ 392 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRK--------LKKEVDRLEKQIADLEKQTNNEL 392 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555555555555555555554432 22344566666666666665544
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.93 E-value=3.9e+02 Score=26.61 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=8.7
Q ss_pred Ccchhhhhhhhhhhhh
Q 040683 54 KVPAIAATVASEVKLD 69 (251)
Q Consensus 54 q~PAiA~pv~sdv~w~ 69 (251)
+.|..+.--+.+.+|.
T Consensus 340 ~~~~~~~~~l~~~l~~ 355 (650)
T TIGR03185 340 ALPAEHVKEIAAELAE 355 (650)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4455555556665554
No 108
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.55 E-value=2.1e+02 Score=23.87 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHHHH
Q 040683 139 SGMYTELRELRLEKEK 154 (251)
Q Consensus 139 s~ly~elr~lkkeke~ 154 (251)
..+-.|+.+|++|.++
T Consensus 157 ~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444555555555555
No 109
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.24 E-value=2.7e+02 Score=24.46 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 040683 119 AKLALKAVK 127 (251)
Q Consensus 119 v~~ALk~VK 127 (251)
+..||+.++
T Consensus 167 L~~~L~eiR 175 (312)
T PF00038_consen 167 LSAALREIR 175 (312)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhHH
Confidence 444444443
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.86 E-value=3.2e+02 Score=25.31 Aligned_cols=23 Identities=9% Similarity=0.302 Sum_probs=12.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhh
Q 040683 185 ELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 185 ~L~e~m~~~E~Eyneiweki~EI 207 (251)
++.+..+.++..|.-....++.+
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555665555555443
No 111
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.60 E-value=2.1e+02 Score=23.02 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
.++++-++.++..+|+.=..+-+++.++++.+
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555554
No 112
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.56 E-value=88 Score=22.05 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLR 213 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilR 213 (251)
..-|+.|++.+..++.+...+...+..+.+.+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448999999999999999999988888776654
No 113
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.44 E-value=4.6e+02 Score=27.02 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=36.3
Q ss_pred HhhhchHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 040683 125 AVKMRKEELQ-DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESL 176 (251)
Q Consensus 125 ~VKlkKeelQ-~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekL 176 (251)
+.+++.+... .+=|..|-.+++.|++||+..+.|..+.-..+-.++.+....
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555433 455778889999999999999998887776666666555443
No 114
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.28 E-value=2.8e+02 Score=26.00 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 040683 133 LQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIES 175 (251)
Q Consensus 133 lQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ek 175 (251)
=|+-.++.+..++-.+..+.+.|...+++|.-..=+.+.+.++
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~ 77 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQ 77 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666665544444444443
No 115
>PLN02678 seryl-tRNA synthetase
Probab=38.25 E-value=3.1e+02 Score=27.04 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
++.+..|++.+..++.+.++++-+|.-|
T Consensus 84 k~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 84 KKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445556777777777777666665443
No 116
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.91 E-value=1.8e+02 Score=22.06 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHhhhchHHHHHHH
Q 040683 98 TVSNLLKIVEEVRG-GNGDVKRAKLALKAVKMRKEELQDEI 137 (251)
Q Consensus 98 tVs~lLk~ieeVR~-gngd~k~v~~ALk~VKlkKeelQ~EI 137 (251)
..|.+..+|..+.+ ++-+.+|+..+..++|.|-.....-|
T Consensus 4 ~lP~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i 44 (83)
T PF07544_consen 4 FLPLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAI 44 (83)
T ss_pred ccchHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888 99999999999999999877766555
No 117
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=37.16 E-value=1.1e+02 Score=25.00 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=47.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 84 KDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKII 163 (251)
Q Consensus 84 ~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~ 163 (251)
..++|.+..+.|-..+-.--|-|+..=+-=-+ +. .-++.|.+-+..|..|+++..+|+....+++++++
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg----------~~-~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 131 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPG----------IE-VSEEEQLKRIKELEEENEEAEEELQEAVKEAEELL 131 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT----------SS-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666555544444444444443221111 11 23677888899999999999999999999999888
Q ss_pred HHHHHhh
Q 040683 164 DEVLMVQ 170 (251)
Q Consensus 164 d~~l~~k 170 (251)
..+=.+=
T Consensus 132 ~~v~~~i 138 (144)
T PF11221_consen 132 KQVQELI 138 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7664443
No 118
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=37.00 E-value=2.6e+02 Score=23.71 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 040683 89 ADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVK 127 (251)
Q Consensus 89 Sd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VK 127 (251)
++|...|=.+|+-|=.+|+-...|-.|+-.+.-.|+-.+
T Consensus 3 ~~cV~SL~~S~~lL~~Si~~L~~~~~D~pRL~kvL~t~R 41 (153)
T PF08287_consen 3 SNCVSSLRSSVQLLQSSIETLDSGTSDFPRLTKVLQTTR 41 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHcccC
Confidence 689999999999999999999999999999998887544
No 119
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=36.91 E-value=3.2e+02 Score=26.27 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
..++-+|-++...|+...+.+-.+-=.+.+++-++...++..+.|-+.+..+-++-.++-+.+.++++.+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887777766666666665444333344444444444444444444444444433
No 120
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.81 E-value=1.7e+02 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHhhhchHHHHHH------------HHHhHHHHHHHHHHHH
Q 040683 123 LKAVKMRKEELQDE------------IMSGMYTELRELRLEK 152 (251)
Q Consensus 123 Lk~VKlkKeelQ~E------------Ims~ly~elr~lkkek 152 (251)
-..+.+++.--|.- ++.++|+=++++.+..
T Consensus 90 ~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~ 131 (192)
T PF05529_consen 90 EDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLE 131 (192)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666642 4566665555544433
No 121
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=36.28 E-value=99 Score=28.28 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=30.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHhcCCCC--hHH-HHHHHHHhhh
Q 040683 84 KDHEYADYTRRLLETVSNLLKIVEEVRGGNGD--VKR-AKLALKAVKM 128 (251)
Q Consensus 84 ~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd--~k~-v~~ALk~VKl 128 (251)
+|-.+-+--=++-+.++-|++|..|.+.||.+ +.+ -..+|+.++.
T Consensus 124 KDdt~EG~Iv~~ADkidal~e~~~Ei~~GN~E~~F~e~y~e~l~~i~~ 171 (215)
T PF12917_consen 124 KDDTLEGQIVKAADKIDALYECFGEIQKGNPEKVFKEIYRESLEKIKK 171 (215)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHTT-S-THHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 34444455556678899999999999999999 444 4557777654
No 122
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.25 E-value=2.4e+02 Score=23.10 Aligned_cols=21 Identities=10% Similarity=0.378 Sum_probs=7.8
Q ss_pred HHHhhHHHHHHHHHHhhhhhh
Q 040683 189 MIGTMEREYDELWERVGEIDD 209 (251)
Q Consensus 189 ~m~~~E~Eyneiweki~EIeD 209 (251)
.+..+...+...++....+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ 179 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEE 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 123
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=36.18 E-value=2e+02 Score=22.03 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=58.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDE 165 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~ 165 (251)
+.-++.-++.|+.....++...+.+.-..-+.+....|.....-. ....+..+..++..|+.+........+.+.+.
T Consensus 92 ~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 168 (213)
T cd00176 92 RELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGK---DLESVEELLKKHKELEEELEAHEPRLKSLNEL 168 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC---CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 334444444555555555554444442222222222222222211 22344455555555555555444333333332
Q ss_pred HHHhhHHHHhhhhh--hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 166 VLMVQTEIESLKGE--KVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 166 ~l~~krE~ekLlg~--~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
+ ..|... ......+..++.++...|+.+...+.+.....
T Consensus 169 ~-------~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L 209 (213)
T cd00176 169 A-------EELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKL 209 (213)
T ss_pred H-------HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222 22236789999999999999999888766543
No 124
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=35.65 E-value=36 Score=26.95 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=48.4
Q ss_pred hhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc
Q 040683 68 LDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMR 129 (251)
Q Consensus 68 w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlk 129 (251)
||++ .+--..|+++..-.|.|...+ =|.+-.+|+.=..--+..|....+=.||+..++.
T Consensus 23 wK~faR~lglse~~Id~I~~~~~~d~---~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~ 82 (97)
T cd08316 23 VKKFVRKSGLSEPKIDEIKLDNPQDT---AEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLC 82 (97)
T ss_pred HHHHHHHcCCCHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHhCCCchHHHHHHHHHHccch
Confidence 8888 556688888888888886554 5888999999999888999999998999987764
No 125
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.63 E-value=3.8e+02 Score=25.24 Aligned_cols=26 Identities=12% Similarity=0.329 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
+..|.+.+..++.+++.+-+.+.+++
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 126
>PRK02119 hypothetical protein; Provisional
Probab=35.59 E-value=1.9e+02 Score=21.74 Aligned_cols=51 Identities=8% Similarity=0.142 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFS 241 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~ 241 (251)
|..+++|+..||....-.-.-|+++.+++.+-- ++|.-.+|.+..|.++..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq--------~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQ--------FVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 456888888898888888888899888887754 456777888888888773
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.54 E-value=3.8e+02 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhHHHHhhhhh-hhhhHHHHHHHHhhHHH
Q 040683 160 GKIIDEVLMVQTEIESLKGE-KVGAEELLDMIGTMERE 196 (251)
Q Consensus 160 ~kI~d~~l~~krE~ekLlg~-~~~~~~L~e~m~~~E~E 196 (251)
.++..+.-.|.+..+.--|+ ..-+.+|..++..+|+-
T Consensus 249 ~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 249 SELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 33333333444433333333 22255666665555543
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.38 E-value=2.6e+02 Score=23.21 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIIDEVLMVQ 170 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~~k 170 (251)
..=.++..|.+....|....+++-..+-.++
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544444433
No 129
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.94 E-value=1.5e+02 Score=29.38 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--HH--HHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 145 LRELRLEKEKLVKRVGKIIDEVLMVQ--TE--IESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 145 lr~lkkeke~L~~Ra~kI~d~~l~~k--rE--~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
+..|.++.+.|..+-.++-.++.... .. ..++...-..++.+...++.++.+|-++-+.++|++
T Consensus 565 ~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 565 IARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555544444432210 00 112222234455666667777777777776666665
No 130
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.28 E-value=3.2e+02 Score=25.99 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRR 214 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRr 214 (251)
..+|.+.+..+.++++++-+++.++++.+.+.
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666666666655554
No 131
>PHA01750 hypothetical protein
Probab=34.03 E-value=1.9e+02 Score=22.83 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIES 175 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ek 175 (251)
-.||-.|+.|.+.+.+|-|.+-.++-..+|-.|+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3567778888888888888888888777777665
No 132
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=33.58 E-value=4.6e+02 Score=25.52 Aligned_cols=133 Identities=24% Similarity=0.260 Sum_probs=96.6
Q ss_pred ecccCCcchhHHHHHHHHHHHHHHHHHHHhcC------CCChHHHHHHHHHhhhchHHHHHHHH-----------HhHHH
Q 040683 81 FKEKDHEYADYTRRLLETVSNLLKIVEEVRGG------NGDVKRAKLALKAVKMRKEELQDEIM-----------SGMYT 143 (251)
Q Consensus 81 ~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~g------ngd~k~v~~ALk~VKlkKeelQ~EIm-----------s~ly~ 143 (251)
+--++.|+.+||-.+-+-=+.+--+.--.|+- |--|.+++--|++-|.|-+++|.||- ..|.+
T Consensus 138 lA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMA 217 (330)
T KOG2991|consen 138 LATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMA 217 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHH
Confidence 55677888888876655444443333344433 34477888889999999999999985 35667
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHHHhhhhhhhh----hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhh
Q 040683 144 ELRELRLEKEKLVK-----RVGKIIDEVLMVQTEIESLKGEKVG----AEELLDMIGTMEREYDELWERVGEIDDKMLR 213 (251)
Q Consensus 144 elr~lkkeke~L~~-----Ra~kI~d~~l~~krE~ekLlg~~~~----~~~L~e~m~~~E~Eyneiweki~EIeD~ilR 213 (251)
--|-|-.|-+.|=. |--+.-.+..+-|...+.|...-++ |++|++-+..|-+---=+++++.|-+|.|-|
T Consensus 218 KCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 218 KCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777776644 4455667778888888887777555 8888888888888888888888888887765
No 133
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=33.42 E-value=76 Score=27.78 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 040683 100 SNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELR-LEKEKLVKRVGKIIDEVLMVQTEIESLKG 178 (251)
Q Consensus 100 s~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lk-keke~L~~Ra~kI~d~~l~~krE~ekLlg 178 (251)
-.+...++.+-.-.-.+....-.|...- +....||..+..++ ...+....-++++++-+-.-....++
T Consensus 18 e~~~~~le~a~~~Ek~~~~~~k~L~~lE--------~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~--- 86 (204)
T PF10368_consen 18 EQLYDQLEKAVKQEKPFKEQQKKLNELE--------KKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKK--- 86 (204)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--------HHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445555555555555555555554433 33445566665553 34455555555555554443333333
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhh
Q 040683 179 EKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 179 ~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrE 215 (251)
..+.|+...+++..+-..|+.|+|.-++.+
T Consensus 87 -------Ek~ai~~a~~e~~~~~~~i~ki~d~~~k~q 116 (204)
T PF10368_consen 87 -------EKEAIEKAKEEFKKAKKYIDKIEDEKLKKQ 116 (204)
T ss_dssp -------HHHHHHHHHHHHTT----------HHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 556666666666666666666666655544
No 134
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=33.11 E-value=3e+02 Score=23.32 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=82.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhh---hchHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHH
Q 040683 87 EYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVK---MRKEELQDEIMSGMYTEL--RELRLEKEKLVKRVGK 161 (251)
Q Consensus 87 EYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VK---lkKeelQ~EIms~ly~el--r~lkkeke~L~~Ra~k 161 (251)
.+..|.+.+.+.+.-|-..++... +||..+++..++.++ -+-.++..+|.+.||.-. =--|...-.|....|.
T Consensus 15 ~l~~~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~I~~lE~eaD~i~~~i~~~L~~~fitP~dReDi~~L~~~lD~ 92 (216)
T TIGR00153 15 NERQHIEKVGECVQLLIKSFELLK--SGNNEKDEELRKEIIEIEHEADEIKREIRLNLEKGAFLPNDRRDLLELAELLDE 92 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHHHHHHHHHH
Confidence 456688889999999999998886 455556666555554 455567888888888632 1124444555566666
Q ss_pred HHHHHHHhhHHHHhhhhhhhh---hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHH
Q 040683 162 IIDEVLMVQTEIESLKGEKVG---AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVK 238 (251)
Q Consensus 162 I~d~~l~~krE~ekLlg~~~~---~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~ 238 (251)
|+|.+=.+-+...- .+-..- -..+.+..+.+-+-...+-+-++.+- .+...-.+.=-+.++..+|+||..+-.
T Consensus 93 I~D~i~~~a~~l~l-~~~~~~~~l~~~~~~l~~~i~~~~~~l~~av~~l~---~~~~~~~i~~~~~~I~~lE~e~D~i~~ 168 (216)
T TIGR00153 93 ILDSLEHAAMLYEL-RKFEFPEELRDEFLLVLKITVDMIQHLHRVVEVIE---LETDLSLANDIIKEIKDLEDEIDVMQI 168 (216)
T ss_pred HHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655444332221 111000 11223333333334444444444431 111100122246778888999988766
Q ss_pred HHHHHH
Q 040683 239 RFSREM 244 (251)
Q Consensus 239 rF~~Em 244 (251)
+..+.+
T Consensus 169 ~~~~~L 174 (216)
T TIGR00153 169 RIYKKL 174 (216)
T ss_pred HHHHHH
Confidence 655554
No 135
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=32.77 E-value=3.4e+02 Score=23.78 Aligned_cols=100 Identities=17% Similarity=0.330 Sum_probs=54.5
Q ss_pred HHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 108 EVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRL--------EKEKLVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 108 eVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkk--------eke~L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
|||-=...........+++.-+--+.+.+|. .+-..+..|++ |.+.|..+-+.+-..+-...+.+..|-..
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~-k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELL-KTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444443 34455555544 45666666666666555555555553332
Q ss_pred ---------------hhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 180 ---------------KVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 180 ---------------~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
......+...+..+..|+..+--+|.|-|
T Consensus 148 leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 148 LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466677777777777777777777665
No 136
>PRK03826 5'-nucleotidase; Provisional
Probab=32.54 E-value=74 Score=27.69 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 040683 94 RLLETVSNLLKIVEEVRGGNGDVKRAKLALKA 125 (251)
Q Consensus 94 rLLetVs~lLk~ieeVR~gngd~k~v~~ALk~ 125 (251)
+..+.++-+|++.++++.||.++......+..
T Consensus 133 K~aDkL~a~l~a~~e~~~Gn~ef~~a~~~~~~ 164 (195)
T PRK03826 133 KQADALCAYLKCLEELSAGNNEFNLAKKRLEK 164 (195)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56789999999999999999988766554443
No 137
>PRK03100 sec-independent translocase; Provisional
Probab=32.48 E-value=1.4e+02 Score=25.40 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040683 118 RAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVK 157 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~ 157 (251)
.+..+++.+|---.+.++++=+.|.+|+.+|++....|.+
T Consensus 32 ~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~~ 71 (136)
T PRK03100 32 WTARALRQARDYASGATSQLREELGPEFDDLRKPLGELQK 71 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555667777777788888888887766655
No 138
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=31.97 E-value=7.5e+02 Score=27.49 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=78.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHhhhchHH--HHHHHHHhHHHHHHHHHHHHHHHH
Q 040683 83 EKDHEYADYTRRLLETVSNLLKIVEEVRGG----NGDVKRAKLALKAVKMRKEE--LQDEIMSGMYTELRELRLEKEKLV 156 (251)
Q Consensus 83 ~~dHEYSd~TrrLLetVs~lLk~ieeVR~g----ngd~k~v~~ALk~VKlkKee--lQ~EIms~ly~elr~lkkeke~L~ 156 (251)
..+|-|---.|-+-..=..+=+.+++-|.. .+-+.++.-++...+-...+ .+.|=+....+.++..+...++-+
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444443333333333344444432 23334444444444332222 222323333344444444444444
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhh---------------h---hhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhh
Q 040683 157 KRVGKIIDEVLMVQTEIESLKGE---------------K---VGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVA 218 (251)
Q Consensus 157 ~Ra~kI~d~~l~~krE~ekLlg~---------------~---~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~a 218 (251)
--.+++-.+.+-.+..|++|+++ . .-.+--+..|+.++++-.++=..|.++.++-.|-||++
T Consensus 410 ~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 410 VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33466777777788888888877 1 11344456788899999999999999999999999987
Q ss_pred hhh
Q 040683 219 MSI 221 (251)
Q Consensus 219 mSi 221 (251)
=|.
T Consensus 490 e~~ 492 (980)
T KOG0980|consen 490 ESQ 492 (980)
T ss_pred HHH
Confidence 554
No 139
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=31.36 E-value=97 Score=30.36 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=13.9
Q ss_pred heecccCCcchhHHHHHH
Q 040683 79 VVFKEKDHEYADYTRRLL 96 (251)
Q Consensus 79 ~~~~~~dHEYSd~TrrLL 96 (251)
.+++--||=|+|....-.
T Consensus 297 ~VLY~GDhi~~Di~~~k~ 314 (448)
T PF05761_consen 297 EVLYFGDHIYGDILKSKK 314 (448)
T ss_dssp GEEEEESSTTTTHHHHHH
T ss_pred eEEEECCchhhhhhhhcc
Confidence 358999999999865443
No 140
>PF15456 Uds1: Up-regulated During Septation
Probab=31.23 E-value=3e+02 Score=22.72 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040683 136 EIMSGMYTELRELRLEKEKLVKRVGKI 162 (251)
Q Consensus 136 EIms~ly~elr~lkkeke~L~~Ra~kI 162 (251)
|||+ |.||.+|++|...|..|.+-.
T Consensus 17 eiLs--~eEVe~LKkEl~~L~~R~~~l 41 (124)
T PF15456_consen 17 EILS--FEEVEELKKELRSLDSRLEYL 41 (124)
T ss_pred cccC--HHHHHHHHHHHHHHHHHHHHH
Confidence 4555 789999999999999998743
No 141
>PF13514 AAA_27: AAA domain
Probab=30.56 E-value=6.9e+02 Score=26.66 Aligned_cols=41 Identities=29% Similarity=0.422 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 040683 138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKG 178 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg 178 (251)
...+-.++.++..+.+.|..+-..+..+...++.+++.|-|
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666777777777778888888888888888887544
No 142
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=29.99 E-value=2.3e+02 Score=24.77 Aligned_cols=52 Identities=27% Similarity=0.275 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 116 VKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLM 168 (251)
Q Consensus 116 ~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~ 168 (251)
.+-.+..++-.+.|+..|+.|+|+ +..+..+++.+.+.+.+.|..-+..+..
T Consensus 19 L~~a~rg~~lLk~KR~~Li~e~~~-~~~~~~~lr~~~~~~~~~a~~~l~~a~~ 70 (201)
T PRK02195 19 LKMLERYLPTLKLKKAQLQAEVRR-AKAEAAELEQEYQKLRQAIEAWISLFSE 70 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667889999999999999986 6788999999999999988876655443
No 143
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=29.65 E-value=1.9e+02 Score=30.67 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHhhhchHHHHHH----------HHHhHHHHHHHHHHHHHHHH
Q 040683 89 ADYTRRLLETVSNLLKIVEEVR--GGNGDVKRAKLALKAVKMRKEELQDE----------IMSGMYTELRELRLEKEKLV 156 (251)
Q Consensus 89 Sd~TrrLLetVs~lLk~ieeVR--~gngd~k~v~~ALk~VKlkKeelQ~E----------Ims~ly~elr~lkkeke~L~ 156 (251)
++.|++..+.+++++..|-+|| .+.|+-+..+.+++.||..|..+-.. |..-|=..=-++....+.+.
T Consensus 87 ~e~t~~~v~~~~~~~~~i~~vk~~~e~~~~~~~e~~~~~v~~~~~~l~~~~n~~~~s~~~i~~lLe~~~~~~~~~~~~i~ 166 (700)
T COG1480 87 AEITQNIVQLYQNFFDAINEVKRSLEENEDENTEYSLKQVKQLKDRLLRDTNTVDISEERILTLLELDSEDLNLTQDTII 166 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHhhhccchhcchHHHHHHHhCChhhhhhHHHHHH
Confidence 5789999999999999999999 67778888888888788777755433 22222222234555555555
Q ss_pred HHHHHHHHHHH
Q 040683 157 KRVGKIIDEVL 167 (251)
Q Consensus 157 ~Ra~kI~d~~l 167 (251)
.-++.+.-++.
T Consensus 167 ~~~~~~~~~~I 177 (700)
T COG1480 167 TEVENAMGNGI 177 (700)
T ss_pred HHHHHHHhccC
Confidence 55555554444
No 144
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.61 E-value=7.6e+02 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHhh
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDKML 212 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~il 212 (251)
+...+..+++.|+.+-.+.++|+..-.
T Consensus 357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~ 383 (1201)
T PF12128_consen 357 WRNELENLQEQLDLLTSKHQDIESKYN 383 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555556655555443
No 145
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=29.49 E-value=2.5e+02 Score=21.30 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhchHHHHH-HHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhhhhh
Q 040683 118 RAKLALKAVKMRKEELQD-EIMSGMYTELRELRLEKEKLVKRV--GKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ~-EIms~ly~elr~lkkeke~L~~Ra--~kI~d~~l~~krE~ekLlg~ 179 (251)
-+...|....-....-.+ |+|..||...+.++...-.|...+ ++.+...|.++-+.-..+..
T Consensus 22 lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee~l~~lL~~ND~L~~~l~~ 86 (100)
T PF03127_consen 22 LLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEELLGELLQANDELNQALER 86 (100)
T ss_dssp HHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444444 799999999999999998888665 34777788887776665443
No 146
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=29.38 E-value=3.8e+02 Score=23.21 Aligned_cols=105 Identities=18% Similarity=0.299 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 100 SNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 100 s~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
+.|+.-+++||.+ |++..+...+..+.--..+.++ ++......|.+-..+=+.+..+-+. -|. +..+..+-..
T Consensus 9 ~~l~~~~~~v~~~-~g~~~l~~~l~~l~~~~~~~~~-~L~e~~~~L~~E~~ed~~~r~~~g~-~W~----r~~S~~~~~~ 81 (296)
T PF13949_consen 9 PSLLEKSEEVRSE-GGIEKLEESLQELPELSQEVRS-ILDEIEEMLDEEEREDEQLRAKYGE-RWT----RPPSSELNAS 81 (296)
T ss_dssp HHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSTT-TCG----SS-HHHHCHH
T ss_pred hHHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCc----CCCcHhhHHH
Confidence 3678888999988 7787777777776554444432 3333333333333333333333221 000 0000110000
Q ss_pred -hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 180 -KVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 180 -~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
+.-+.++...+...-.-...++.+++.++.-|
T Consensus 82 l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l 114 (296)
T PF13949_consen 82 LRKELQKYREYLEQASESDSQLRSKLESIEENL 114 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566666666666667777777776665
No 147
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=29.29 E-value=1.2e+02 Score=22.51 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=29.6
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETV 217 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~ 217 (251)
+..+++|+..||+.|..+-+.-...++.+.|-|.-
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H 37 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHH 37 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46788999999999999999888888888887743
No 148
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=28.90 E-value=1.8e+02 Score=22.36 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=36.8
Q ss_pred HHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHh---hhhhhHhhhhhhhhhhhhhh
Q 040683 166 VLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV---GEIDDKMLRRETVAMSIGVR 224 (251)
Q Consensus 166 ~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki---~EIeD~ilRrET~amSiGVr 224 (251)
...++.++.++-..-..++.+...+..++.+++.+..++ .++.+.+..-.++|-.-||.
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~~~~~ll~~l~~~A~~~gv~ 69 (144)
T PF04350_consen 8 IQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEEEIPSLLEDLNRLAKKSGVK 69 (144)
T ss_dssp ----HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGGHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHCCCe
Confidence 344555565554445557777777888888888777776 35667777777777777764
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.86 E-value=6.1e+02 Score=25.46 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=28.6
Q ss_pred hHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 170 QTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 170 krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
+.+...+-.......+|+-..+.-++-|+.+..|..|..-..
T Consensus 365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333345577788888888889999999988876443
No 150
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.83 E-value=9.4e+02 Score=27.64 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=25.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 040683 134 QDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLK 177 (251)
Q Consensus 134 Q~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLl 177 (251)
..+.++.++.+-..++-+.+.....-..+.-+..+++.++..|-
T Consensus 593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~ 636 (1317)
T KOG0612|consen 593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLE 636 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555555555555666666666666666666666666543
No 151
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=28.79 E-value=2.3e+02 Score=21.60 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=35.2
Q ss_pred HHHHHHHHhhccCCCCcchhhhhhhhhhhhhcc-----ccc--cchhheeccc-CCcchhHH--HHHHHHHHHHHHHHHH
Q 040683 39 LVYAVFCIAVSFSPFKVPAIAATVASEVKLDNK-----GRE--IETEVVFKEK-DHEYADYT--RRLLETVSNLLKIVEE 108 (251)
Q Consensus 39 iv~AlFciaiG~~pfq~PAiA~pv~sdv~w~kk-----~~~--~~~E~~~~~~-dHEYSd~T--rrLLetVs~lLk~iee 108 (251)
+..++-.+++-++|| .|.+++-+|.+- +.. +..+ .|. ++++-|-. ....+.+..+.+.++.
T Consensus 66 l~~~l~~~~~ll~P~------~P~~aEeiw~~l~~~~~~~~~si~~~---~~p~~~~~~~~~~~~~~~~~~~~v~~~i~~ 136 (153)
T PF08264_consen 66 LYEILKILLILLSPF------MPFIAEEIWQRLKSEKLGEKSSIFLE---KWPEDPEFIDEELEEEAFEILKEVVQVIRK 136 (153)
T ss_dssp HHHHHHHHHHHHTTT------SHHHHHHHHHHCTTHHTTSSSSGGGS--------GGGGHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCC------CcHHHHHHHHHhhhccCCCCCeeeeC---CCCCChhhhcHHHHHHHHHHHHHHHHHHHH
Confidence 344777778888887 588899999432 111 1111 233 34333322 2445555567777777
Q ss_pred HhcC
Q 040683 109 VRGG 112 (251)
Q Consensus 109 VR~g 112 (251)
+|+-
T Consensus 137 ~r~~ 140 (153)
T PF08264_consen 137 IRKE 140 (153)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7654
No 152
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.66 E-value=2.1e+02 Score=19.96 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhh
Q 040683 144 ELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGA 183 (251)
Q Consensus 144 elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~ 183 (251)
.+..++.+...|+..-.++-.+.-..+.|.+.|-...+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3344444444444444444444444555555543443333
No 153
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=28.04 E-value=2.1e+02 Score=21.78 Aligned_cols=48 Identities=40% Similarity=0.509 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRF 240 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF 240 (251)
+..|++-++.|--+|.++...+..|+. |.|.|.=--++++++.||++-
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~----------s~~~~~R~~L~~~l~~lv~~m 66 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDP----------SLGRRKRRDLEQELEELVKRM 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----------ccChHHHHHHHHHHHHHHHHH
Confidence 456888888888899999777777766 445555556788999999864
No 154
>PRK14127 cell division protein GpsB; Provisional
Probab=28.02 E-value=1.8e+02 Score=23.79 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 114 GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 114 gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
=|..+|+.=|+.|--.-+.++.|| .+|-.+++.|+.+.+.++.+..
T Consensus 23 Yd~~EVD~FLd~V~~dye~l~~e~-~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 23 YDQDEVDKFLDDVIKDYEAFQKEI-EELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888876555555544 3455555555555555555444
No 155
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=27.45 E-value=59 Score=25.70 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhhhH
Q 040683 194 EREYDELWERVGEIDDK 210 (251)
Q Consensus 194 E~Eyneiweki~EIeD~ 210 (251)
..+||++-.|+||||.+
T Consensus 14 ~~dfne~~kRLdeieek 30 (75)
T COG4064 14 PDDFNEIHKRLDEIEEK 30 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778888888888765
No 156
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=27.10 E-value=5.6e+02 Score=24.48 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHhhhhh------hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 172 EIESLKGE------KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 172 E~ekLlg~------~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
+.+.||.- .+.+.+|.+..+.++++++++-..+..|
T Consensus 376 q~~yLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~~ 417 (426)
T PF00521_consen 376 QADYLLSMPLRRLTKEEIEKLQKEIKELEKEIEELEKILPKI 417 (426)
T ss_dssp HHHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 4556666666666666666665555543
No 157
>PRK06328 type III secretion system protein; Validated
Probab=27.08 E-value=4.4e+02 Score=23.26 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh------hhhhhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESL------KGEKVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekL------lg~~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
|.-+.+=..=.+....+|++|+.+. +.|.+++ -|-.+|..+..+.+..++.+++.+++.+
T Consensus 25 ~~~~~~A~~il~~a~~~ae~i~~ea---~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~~~~~~ 90 (223)
T PRK06328 25 FSALLDAQELLEKTKEDSEAYTQET---HEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQKLREQV 90 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666667777777664 2223322 3557888888888899999998887764
No 158
>PRK14127 cell division protein GpsB; Provisional
Probab=27.05 E-value=2.5e+02 Score=23.00 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---hhhhhhhhhHHHHHHHHhhHHH
Q 040683 138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIE---SLKGEKVGAEELLDMIGTMERE 196 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~e---kLlg~~~~~~~L~e~m~~~E~E 196 (251)
+..|+.|..+|+.+...|..+.+..-.++......-. ..-...-.-=-+..|+++||++
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~ 100 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
Confidence 3566677777777777776666655554443321110 0000011123356788888875
No 159
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=26.99 E-value=51 Score=27.66 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHH
Q 040683 97 ETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQD 135 (251)
Q Consensus 97 etVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~ 135 (251)
+.|+.||..|+++...||+--=-....+.++.+..+.|+
T Consensus 172 ~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~~~~~ 210 (212)
T PF04548_consen 172 SQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKEEYQA 210 (212)
T ss_dssp HHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH----
T ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhh
Confidence 579999999999999999754444466666666656554
No 160
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.98 E-value=2.9e+02 Score=24.91 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRR 246 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~Emr~ 246 (251)
++.|.+.+..++.+-.++-+.+.++.|+.+|- .-|.++.-+|+.+|...
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~---------------~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRT---------------VAEYDNYRKRTAKEKEG 104 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence 56677777777777777778888888887764 56888999998888754
No 161
>PRK00736 hypothetical protein; Provisional
Probab=26.93 E-value=2.7e+02 Score=20.67 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFS 241 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~ 241 (251)
+++|+..||..-.-.-.-|+++.+.+.+-- ++|.-.+|.|..|+.|+.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq--------~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQW--------KTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 455666666666666677788887776653 556777888999988874
No 162
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=26.73 E-value=3.3e+02 Score=23.49 Aligned_cols=52 Identities=31% Similarity=0.448 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHH
Q 040683 144 ELRELRLEKEKLVKRV-----------GKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMER 195 (251)
Q Consensus 144 elr~lkkeke~L~~Ra-----------~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~ 195 (251)
.+.-|.+..+.|..|. .+|+|..+.++..+-.....|+.+-.+-+++..+++
T Consensus 6 ~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~ 68 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNK 68 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4455555556666555 468899999999988877778877766666666654
No 163
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.23 E-value=6.3e+02 Score=24.78 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhhh---chHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040683 91 YTRRLLETVSNLLKIVEEVRG--GNGDVKRAKLALKAVKM---RKEELQDEIMSGMYTELRELRLEKEKLVK 157 (251)
Q Consensus 91 ~TrrLLetVs~lLk~ieeVR~--gngd~k~v~~ALk~VKl---kKeelQ~EIms~ly~elr~lkkeke~L~~ 157 (251)
+++++.+.+...+..+..--. +.|-...+..|++++.- ...+--.+.|+..|.++.++..+.+....
T Consensus 223 n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~ 294 (563)
T TIGR00634 223 NLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLD 294 (563)
T ss_pred CHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776666621000 11323344444443321 11122234555666666666555554433
No 164
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.07 E-value=4.1e+02 Score=22.51 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=16.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHh
Q 040683 226 LCFIERECEELVKRFSREMRR 246 (251)
Q Consensus 226 L~FIeREce~LV~rF~~Emr~ 246 (251)
+.=.+.|=.+||+|+-+.+.+
T Consensus 167 ~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 167 LRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999877654
No 165
>PRK10626 hypothetical protein; Provisional
Probab=25.99 E-value=5.3e+02 Score=23.86 Aligned_cols=45 Identities=13% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhhhhhh-HHHHHHHHhhHHHHHHHHHH
Q 040683 153 EKLVKRVGKIIDEVLMVQTEIESLKGEKVGA-EELLDMIGTMEREYDELWER 203 (251)
Q Consensus 153 e~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~-~~L~e~m~~~E~Eyneiwek 203 (251)
..=...|..++|.|+. .++|...++ .||.+.++.+...||.|-|.
T Consensus 92 ~~~l~~A~~alD~Vi~------~~~G~~snvr~rl~~l~~~l~~q~~~i~e~ 137 (239)
T PRK10626 92 KSRLEKARVALDKVIV------QELGESSNVRNRLTKLDAQLKQQMNRIIEH 137 (239)
T ss_pred HHHHHHHHHHHHHHHH------hccCccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345667888898887 679998776 78999999999999988776
No 166
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.95 E-value=5.2e+02 Score=23.75 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHhhHH
Q 040683 115 DVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEV----------------------LMVQTE 172 (251)
Q Consensus 115 d~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~----------------------l~~krE 172 (251)
.+.++..-|..+..+..++. ..+..=|+.|..++.+.+.|...-+.-+..+ -..+.+
T Consensus 255 ~i~~l~~~l~~le~~l~~l~-~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 333 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELS-QRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAK 333 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443 2344455666666655555555433322211 111222
Q ss_pred HHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 173 IESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 173 ~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
...+-.......+|+-..+.-+.-|+.+..|..|.+
T Consensus 334 ~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 334 VLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233466677777777888888888887764
No 167
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.84 E-value=3.3e+02 Score=21.33 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=21.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 040683 136 EIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTE 172 (251)
Q Consensus 136 EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE 172 (251)
|.=.+|..+...|+.-++.|..|.+.+=.+.-+++.|
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666678888887777776654433333333
No 168
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.58 E-value=4e+02 Score=22.33 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHhhhhh-hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhh
Q 040683 172 EIESLKGE-KVGAEELLDMIGTMEREYDELWERVGEIDDKMLR 213 (251)
Q Consensus 172 E~ekLlg~-~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilR 213 (251)
.++.+.-. .++.+.|+-|+.++++-=..+.++++++-..|-.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333 6778889999999999999999999988877654
No 169
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.43 E-value=3.4e+02 Score=22.13 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=9.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWER 203 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiwek 203 (251)
+..|+..+...+.+|.+.-++
T Consensus 64 L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 64 LQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444333
No 170
>PHA02675 ORF104 fusion protein; Provisional
Probab=25.24 E-value=1.6e+02 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVA 218 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~a 218 (251)
-+-|++|+.++++.|..+.+.-.+.++.|.|-|.-+
T Consensus 32 ~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ 67 (90)
T PHA02675 32 KESVEERLVSLLDSYKTITDCCRETGARLDRLERHL 67 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999977644
No 171
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.23 E-value=8e+02 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 040683 190 IGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSR 242 (251)
Q Consensus 190 m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~ 242 (251)
...+++||+++++.|.+++..+.-...+ .-+|-.|..++-+.|-.
T Consensus 429 ~~kl~~e~~~l~~~i~~l~~iL~~~~~~--------~~~i~~el~~ik~kfg~ 473 (738)
T TIGR01061 429 IFELKEEQNELEKKIISLEQIIASEKAR--------NKLLKKQLEEYKKQFAQ 473 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHHHHHHHhCC
Confidence 5588999999999999999987655433 34677788888888864
No 172
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=25.21 E-value=4e+02 Score=22.11 Aligned_cols=68 Identities=25% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHhhhhhh----hhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 141 MYTELRELRLEKEKLVKRVGK------IIDEVLMVQTEIESLKGEK----VGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~k------I~d~~l~~krE~ekLlg~~----~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
|..-++-+.--|+-|..|... ....+.+.+.+.++|.+.. +.++.+...+..++..++.+-.+.+.|-
T Consensus 113 L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 113 LREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555666666554 3456667777788877772 3344444444444444444444444443
No 173
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=25.17 E-value=1.2e+02 Score=25.39 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred cchhhe-ecccCCcchhHHHHHHHHH----------HHHHHHHHHHhcCCCChHH
Q 040683 75 IETEVV-FKEKDHEYADYTRRLLETV----------SNLLKIVEEVRGGNGDVKR 118 (251)
Q Consensus 75 ~~~E~~-~~~~dHEYSd~TrrLLetV----------s~lLk~ieeVR~gngd~k~ 118 (251)
..++-. +-+.++.|..| |..|... ...|+-|.-+..||.++-+
T Consensus 126 ~~~~l~~l~~~~~n~~~y-r~~l~~~~~~~p~IP~lg~~l~dl~~~~e~~~~~~~ 179 (237)
T cd00155 126 LFEELEELVDPSRNFKNY-RKLLKSVGPNPPCVPFLGVYLKDLTFLHEGNPDFLE 179 (237)
T ss_pred HHHHHHHHhCcHhhHHHH-HHHHHhcCCCCCCeeehhHHHHHHHHHHccCCccCc
Confidence 333443 56667888888 5555555 6789999889999988754
No 174
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=24.77 E-value=3.6e+02 Score=22.62 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=6.5
Q ss_pred HHHHHhhhhhhHh
Q 040683 199 ELWERVGEIDDKM 211 (251)
Q Consensus 199 eiweki~EIeD~i 211 (251)
++=++|+++|.++
T Consensus 87 ~l~~rvd~Lerqv 99 (108)
T COG3937 87 ELTERVDALERQV 99 (108)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555444
No 175
>PRK10698 phage shock protein PspA; Provisional
Probab=24.69 E-value=4.9e+02 Score=22.96 Aligned_cols=84 Identities=13% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhh---hhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhh
Q 040683 138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKV---GAEELLDMIGTMEREYDELWERVGEIDDKMLRR 214 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~---~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRr 214 (251)
...|-.++-......+.|.....+.=..+-.++...+.|+..-. -..++-+.|+.+.. +.-..+++.||+.|.++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~--~~a~~~f~rmE~ki~~~ 178 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKL--DEAMARFESFERRIDQM 178 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555411 12334444444333 23445666677777777
Q ss_pred hhhhhhhhh
Q 040683 215 ETVAMSIGV 223 (251)
Q Consensus 215 ET~amSiGV 223 (251)
|.-|-++|.
T Consensus 179 Ea~aea~~~ 187 (222)
T PRK10698 179 EAEAESHGF 187 (222)
T ss_pred HHHHhHhhc
Confidence 776665543
No 176
>smart00338 BRLZ basic region leucin zipper.
Probab=24.56 E-value=1.6e+02 Score=20.67 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKML 212 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~il 212 (251)
..-+..|+..+..++.+...+..+++.+...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444889999999999999999999988876654
No 177
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.55 E-value=6.1e+02 Score=24.13 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
......|.+.+..++.++..+.+.+...
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666666777777666666554
No 178
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.31 E-value=1e+03 Score=26.51 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRR 247 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~Emr~~ 247 (251)
++.+...++.++++....-++++..+....+.+ ++.+.+.++...-..|.+|+..+
T Consensus 937 L~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~---------~~~~~~~~~~~~~~~~~~e~~~~ 992 (1353)
T TIGR02680 937 LASGGRELPRLAEALATAEEARGRAEEKRAEAD---------ATLDERAEARDHAIGQLREFALT 992 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 444666666677777777777777766665544 34667777777777887877654
No 179
>cd07055 BMC_like_2 Bacterial Micro-Compartment (BMC)-like domain 2. BMC like 2 domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view.
Probab=24.11 E-value=58 Score=24.67 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHhhhc
Q 040683 113 NGDVKRAKLALKAVKMR 129 (251)
Q Consensus 113 ngd~k~v~~ALk~VKlk 129 (251)
-||+..|+.||+++|-+
T Consensus 44 ~Gdvs~Ve~Al~~i~~~ 60 (61)
T cd07055 44 FGETSAVELAMREIEED 60 (61)
T ss_pred EecHHHHHHHHHHHhhc
Confidence 58999999999999753
No 180
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.10 E-value=7.3e+02 Score=24.76 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 040683 231 RECEELVKRFSREMRR 246 (251)
Q Consensus 231 REce~LV~rF~~Emr~ 246 (251)
+|+-.+++....|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~ 178 (514)
T TIGR03319 163 HEAAKLIKEIEEEAKE 178 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555544443
No 181
>PRK04325 hypothetical protein; Provisional
Probab=24.04 E-value=3.2e+02 Score=20.57 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=39.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFS 241 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~ 241 (251)
+..+++|+..||....-.-.-|+++.+++.+-. ++|.-.+|.|..|+.|..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq--------~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQ--------QTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 455778888888888888888888888887654 456667788888888773
No 182
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.94 E-value=4.5e+02 Score=22.32 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 040683 118 RAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLK 177 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLl 177 (251)
+|..=|++++-++.-|++.|.+ |=++|.....+++.++.-|. +++++..+|-
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~-LEreLe~~q~~~e~~~~daE-------n~k~eie~L~ 58 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVES-LERELEMSQENKECLILDAE-------NSKAEIETLE 58 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHH-HHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHH
Confidence 4556678888888888887754 66677666666666655444 4555555543
No 183
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.70 E-value=5e+02 Score=22.76 Aligned_cols=152 Identities=18% Similarity=0.320 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040683 88 YADYTRRLLETVSNLLKIVEEVRGGNGD------------VKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKL 155 (251)
Q Consensus 88 YSd~TrrLLetVs~lLk~ieeVR~gngd------------~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L 155 (251)
|=+-.|.|=..-..|-.-|...+...+. +.++...++.....+-.++-++ +.+..++.+|+.+.+..
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~-~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEI-DNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhh-hhHHHHHHHHHHHHHHH
Confidence 3344444444445555556666655322 2233344444445555554443 45555555555555544
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhh---hhhhhH
Q 040683 156 VKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIG---VRELCF 228 (251)
Q Consensus 156 ~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiG---VrEL~F 228 (251)
...-..+=.+.-..+++.+..-.. ...+..|.+.+.-+..-|. +.|.++..++. .++++.+. -.+|.-
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he---eEi~~L~~~~~--~~~~~e~~~~~~~dL~~ 169 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE---EEIEELREQIQ--SSVTVEVDQFRSSDLSA 169 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSTT------------------HHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhccc--cccceeecccccccchh
Confidence 333333333333334443332222 1224444444444444433 34666666665 33333322 233433
Q ss_pred ----hHHHHHHHHHHHHHHHH
Q 040683 229 ----IERECEELVKRFSREMR 245 (251)
Q Consensus 229 ----IeREce~LV~rF~~Emr 245 (251)
|-.+++..++.+..++-
T Consensus 170 ~L~eiR~~ye~~~~~~~~e~e 190 (312)
T PF00038_consen 170 ALREIRAQYEEIAQKNREELE 190 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhh
Confidence 44577888888887764
No 184
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=23.69 E-value=8.5e+02 Score=25.42 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 040683 190 IGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSR 242 (251)
Q Consensus 190 m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~ 242 (251)
.+.+++||+++...|.++++.+.- =.-+|-.|..+|.+.|-.
T Consensus 406 ~~k~~~e~~~l~~~i~~~~~~L~~-----------~~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 406 IDKNQKEIRILNKELKSVEKNLKS-----------IKGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhCC
Confidence 456788999999999999887765 235788889999998865
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.44 E-value=7.9e+02 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=21.9
Q ss_pred HHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040683 120 KLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKL 155 (251)
Q Consensus 120 ~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L 155 (251)
+.|...++++.+..|..| .++...+..|+.|++.|
T Consensus 395 D~aaa~~rl~~~~kp~~L-~rLer~l~~L~~E~e~l 429 (857)
T PRK10865 395 DEAASSIRMQIDSKPEEL-DRLDRRIIQLKLEQQAL 429 (857)
T ss_pred HHHhcccccccccChHHH-HHHHHHHHHHHHHHHHH
Confidence 334445666666555554 67777777777777766
No 186
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=23.41 E-value=1.5e+03 Score=28.18 Aligned_cols=93 Identities=22% Similarity=0.382 Sum_probs=66.7
Q ss_pred chHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh---------hhhhHHHHHHH
Q 040683 129 RKEELQDEI---------MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE---------KVGAEELLDMI 190 (251)
Q Consensus 129 kKeelQ~EI---------ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~---------~~~~~~L~e~m 190 (251)
.+.+|.+-| |-..|.+|.++-.|.+. ++.-..++..|=.++-++++.||. ++.++..-+.|
T Consensus 1167 ~~k~Iek~~~~~~~ki~~~k~IYe~m~kl~~El~e-ie~~k~s~e~V~~i~l~Y~r~li~~fl~~I~eEk~Ka~~~ie~i 1245 (2757)
T TIGR01612 1167 DPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAE-IEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAM 1245 (2757)
T ss_pred CHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666544 67889999999999877 666678899999999999999988 44455566666
Q ss_pred HhhHHHHHHHHHHhhhhhhHh-----hhhhhhhhhhh
Q 040683 191 GTMEREYDELWERVGEIDDKM-----LRRETVAMSIG 222 (251)
Q Consensus 191 ~~~E~Eyneiweki~EIeD~i-----lRrET~amSiG 222 (251)
...=++.+.|..+-++|+.-+ -..|+.+++|.
T Consensus 1246 e~y~~~iD~Ikkks~e~~~~~~~~~~~~~e~~~~ni~ 1282 (2757)
T TIGR01612 1246 EAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNIS 1282 (2757)
T ss_pred HHHHHHHHHHHhcCchhhhhhhhhhhhHHHHHHhccc
Confidence 666666667888888887211 12466666543
No 187
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=23.30 E-value=1.4e+02 Score=21.13 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 040683 131 EELQDEIMSGMYTELRELRLE 151 (251)
Q Consensus 131 eelQ~EIms~ly~elr~lkke 151 (251)
+.+..|||..|..|+.++|.|
T Consensus 6 e~~KqEIL~EvrkEl~K~K~E 26 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVKEE 26 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567888777777666644
No 188
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=23.16 E-value=4.7e+02 Score=22.19 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040683 90 DYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMV 169 (251)
Q Consensus 90 d~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~ 169 (251)
||+-=+=..+...||-.|+ .+|.-++.-+......+.--++.+....+.-|-.-|..+....+.+-.....++..-...
T Consensus 14 DHrpvIqgEI~~FvkEFE~-KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l~~~e~~~ 92 (145)
T PF14942_consen 14 DHRPVIQGEIRYFVKEFEE-KRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERLQAANSMCSRLQQKEQEK 92 (145)
T ss_pred CchHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444556666666654 568889999988888888888888788888787778887777777666666665544443
Q ss_pred hH--------HHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHH
Q 040683 170 QT--------EIESLKGEKVGAEELLDMIGTMEREYDELWER 203 (251)
Q Consensus 170 kr--------E~ekLlg~~~~~~~L~e~m~~~E~Eyneiwek 203 (251)
+. +..+ .-|.+=|..+..+=..++++|++--++
T Consensus 93 ~~~~~l~~~~~~~~-~~we~f~~e~~~~~~~vdee~~~~~~~ 133 (145)
T PF14942_consen 93 QKDDYLQANREQRK-QEWEEFMKEQQQKKQRVDEEFREKEER 133 (145)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2222 222333555555555666666554333
No 189
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.05 E-value=1.1e+03 Score=26.67 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=34.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhh----hhhhhhhhhhhhhhhHhHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKML----RRETVAMSIGVRELCFIERECEELVK 238 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~il----RrET~amSiGVrEL~FIeREce~LV~ 238 (251)
..-|-.-+..++.+|.+..++|.+|++-|- |+++.+ .++.-+-|+-++|..
T Consensus 413 e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~-----~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 413 ENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFD-----AENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHH-----HHHHHHHHHHHHHHH
Confidence 444556677889999999999988776554 666653 355556667666643
No 190
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.66 E-value=55 Score=25.10 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 040683 115 DVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLK 177 (251)
Q Consensus 115 d~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLl 177 (251)
|..+|+.-|+.|-..-+.|+.++- .|..++.+|..+...+..+...+-+.+..+++..+.+.
T Consensus 19 d~~eVD~fl~~l~~~~~~l~~e~~-~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 19 DPDEVDDFLDELAEELERLQRENA-ELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCT--------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
Confidence 556677777776666666666553 35566666666666665555555555555555544433
No 191
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.48 E-value=1.9e+02 Score=21.83 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
++-|..|+..+++.-+++-..+.++.+.+
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 107 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQI 107 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666665555555555555544
No 192
>PRK04654 sec-independent translocase; Provisional
Probab=22.43 E-value=5.8e+02 Score=23.56 Aligned_cols=17 Identities=24% Similarity=0.091 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040683 94 RLLETVSNLLKIVEEVR 110 (251)
Q Consensus 94 rLLetVs~lLk~ieeVR 110 (251)
||=+.+..+-+.|..+|
T Consensus 24 rLPe~aRtlGk~irk~R 40 (214)
T PRK04654 24 RLPKAARFAGLWVRRAR 40 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555666665
No 193
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.35 E-value=4.1e+02 Score=21.30 Aligned_cols=106 Identities=22% Similarity=0.337 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHH-----------HHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 92 TRRLLETVSNLLKIVE-----------EVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 92 TrrLLetVs~lLk~ie-----------eVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
..+++..|..||.... ..++-.+|+..+.......+-+-++++.++- ..-...+.|.++...+.....
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA-SAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665443 3445556777777777777777788887776 666677777777666665544
Q ss_pred HHHHHHHHhhHHHHhhhhh-hhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 161 KIIDEVLMVQTEIESLKGE-KVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg~-~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
.--+ |..+|..+ ........-.|-.-|.||+++-+++.
T Consensus 112 ~~ke-------e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 112 QEKE-------ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333 33443333 22233445556667778888877765
No 194
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.32 E-value=1.4e+02 Score=23.34 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=48.8
Q ss_pred hhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc--hHHHHHHHH
Q 040683 68 LDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMR--KEELQDEIM 138 (251)
Q Consensus 68 w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlk--KeelQ~EIm 138 (251)
|++. .+--..|..+..-.|.+.+. -|.+-.+|+.=..-.+.++.+..+-.||..++++ .+.+|+.++
T Consensus 22 Wk~laR~LGLse~~I~~i~~~~~~~----~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 22 WNRLMRQLGLSENEIDVAKANERVT----REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCCCC----HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 8887 33347777766666665543 5677888888888888899999999999998665 456665544
No 195
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=22.22 E-value=68 Score=24.66 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=47.8
Q ss_pred hhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhhhc
Q 040683 68 LDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGG-NGDVKRAKLALKAVKMR 129 (251)
Q Consensus 68 w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~g-ngd~k~v~~ALk~VKlk 129 (251)
||+. .+--..|.++...+|.|. ++=|.+-.+|+.=..-.++ ++.+..+-.||+...+.
T Consensus 14 wk~~~R~LGlse~~Id~ie~~~~----~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~~~l~ 73 (80)
T cd08313 14 WKEFVRRLGLSDNEIERVELDHR----RCRDAQYQMLKVWKERGPRPYATLQHLLSVLRDMELV 73 (80)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCC----ChHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHcCcH
Confidence 9998 666788888888888775 5668888899998888886 89999999999988764
No 196
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.95 E-value=2e+02 Score=21.33 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 182 GAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 182 ~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
.+.+++-.++++.++-.+|-+.|++|++-+
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777788888888888887766
No 197
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.92 E-value=2.9e+02 Score=22.57 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040683 144 ELRELRLEKEKLVKRVGKIIDE 165 (251)
Q Consensus 144 elr~lkkeke~L~~Ra~kI~d~ 165 (251)
+...++.+.+.+..+....+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~ 65 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDE 65 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544
No 198
>PF08352 oligo_HPY: Oligopeptide/dipeptide transporter, C-terminal region; InterPro: IPR013563 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry features a region found towards the C terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (IPR003439 from INTERPRO). All characterised members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the haem precursor delta-aminolevulinic acid. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0015833 peptide transport
Probab=21.87 E-value=39 Score=23.29 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=15.6
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 040683 85 DHEYADYTRRLLETVSNLLKI 105 (251)
Q Consensus 85 dHEYSd~TrrLLetVs~lLk~ 105 (251)
++...+|||.||..++.+-..
T Consensus 11 ~~P~HPYT~~Ll~a~p~~~~~ 31 (64)
T PF08352_consen 11 DNPRHPYTRALLAAVPSIDPR 31 (64)
T ss_pred HCccCHHHHHHHHcCcchhhh
Confidence 355567899999999876443
No 199
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.85 E-value=3.3e+02 Score=19.90 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=29.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 040683 135 DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKG 178 (251)
Q Consensus 135 ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg 178 (251)
++++..|=.....+..+.+.|.+....+...+=+.+..+..++|
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666666667777777777777777766666666666655544
No 200
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=21.51 E-value=6.1e+02 Score=22.97 Aligned_cols=109 Identities=15% Similarity=0.301 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 040683 99 VSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKG 178 (251)
Q Consensus 99 Vs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg 178 (251)
+.++-|+..||+-+ +++|++.=.. =.+.-+..++.-|+++-..-+.|..+=.++.+.....-.=.-. ++
T Consensus 3 ~~~~~k~~~e~~~~--~~ke~D~~Fe--------~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~-l~ 71 (218)
T cd07663 3 FKNMVKSADEVLFS--GVKEVDEFFE--------QEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNS-VA 71 (218)
T ss_pred HHHHHHhHHHHHHh--ccccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 45778999999994 5888876332 2334467778888888777777776655555533221100000 11
Q ss_pred hhh--hhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhh
Q 040683 179 EKV--GAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRE 225 (251)
Q Consensus 179 ~~~--~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrE 225 (251)
..+ ++.+-- ..-.++.|++..++....-.|.+.|+-+++.
T Consensus 72 ~ee~t~L~kal-------s~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~ 113 (218)
T cd07663 72 AEEPTVIKKYL-------LKVAELFEKLRKVEDRVASDQDLKLTELLRY 113 (218)
T ss_pred ccccchHHHHH-------HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 111 122222 3345666777777777788888888877776
No 201
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.09 E-value=7.6e+02 Score=23.85 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=11.1
Q ss_pred CCChHHHHHHHHHhhhchHHHHH
Q 040683 113 NGDVKRAKLALKAVKMRKEELQD 135 (251)
Q Consensus 113 ngd~k~v~~ALk~VKlkKeelQ~ 135 (251)
..++..++..|+.+..+...+|.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLED 92 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444443
No 202
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=7e+02 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHhhhhhhHh
Q 040683 193 MEREYDELWERVGEIDDKM 211 (251)
Q Consensus 193 ~E~Eyneiweki~EIeD~i 211 (251)
.+.|.+++-+++.++|..+
T Consensus 81 a~~Ei~~~~~~~~~le~~L 99 (363)
T COG0216 81 AEEEIKELEAKIEELEEEL 99 (363)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 203
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.75 E-value=3.5e+02 Score=19.82 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHH
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRF 240 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF 240 (251)
+++|+..||....-.-.-|+++.+.+.+-. ++|.-.++.+..|.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq--------~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQ--------RQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666665543 34555566666666554
No 204
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=20.74 E-value=5.6e+02 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 155 LVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 155 L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
...+++.++..-.....||..|+-|
T Consensus 56 ~~~~~~~~~~~~~~ee~E~~~l~a~ 80 (170)
T PF14943_consen 56 YEEEAGSLAETKEEEEEEHRRLMAW 80 (170)
T ss_pred HhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3345555554444455778888877
No 205
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.64 E-value=7e+02 Score=26.32 Aligned_cols=71 Identities=24% Similarity=0.250 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh-------------------hhhhHHHHHHHHhhHHHHHHHHH
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE-------------------KVGAEELLDMIGTMEREYDELWE 202 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~-------------------~~~~~~L~e~m~~~E~Eyneiwe 202 (251)
-..+-.|....+.|.++=++=..+.-.+..++++|.+. -..++.|-..+.++++||+.=.+
T Consensus 102 ke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle 181 (660)
T KOG4302|consen 102 KEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLE 181 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555666666677776555 13477888899999999998888
Q ss_pred HhhhhhhHhh
Q 040683 203 RVGEIDDKML 212 (251)
Q Consensus 203 ki~EIeD~il 212 (251)
++.++...|.
T Consensus 182 kv~~~~~~I~ 191 (660)
T KOG4302|consen 182 KVLELKEEIK 191 (660)
T ss_pred HHHHHHHHHH
Confidence 8887766554
No 206
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.59 E-value=4.2e+02 Score=22.47 Aligned_cols=45 Identities=29% Similarity=0.502 Sum_probs=26.9
Q ss_pred HHhhHHHHhhhhhhhh------hHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 167 LMVQTEIESLKGEKVG------AEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 167 l~~krE~ekLlg~~~~------~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
-+.+|-++.||+-.+| +..+-+.++.+.++-+.+-++++.|++..
T Consensus 26 ~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 26 RKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777655444 44445556666666666666666666554
No 207
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.54 E-value=5.5e+02 Score=22.03 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=42.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh-----hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 136 EIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE-----KVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 136 EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~-----~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
+=+..+=.+++++........++-+.|... +++|....-.. +..+..+.+.+...-++--++||..
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~---~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSEL---IKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666654 45666665444 4457777777777777888888865
No 208
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.47 E-value=1.1e+03 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=12.4
Q ss_pred cccccccccee-eehhhHHHHHHHHhhccCC
Q 040683 23 GTLKGKTESAI-SVTKTLVYAVFCIAVSFSP 52 (251)
Q Consensus 23 ~~~~~~~~~~i-citk~iv~AlFciaiG~~p 52 (251)
++|..+...-- .|.|-|-=.| +..-++.|
T Consensus 543 ~fL~~~~p~We~tIGKVid~eL-L~r~dL~P 572 (1201)
T PF12128_consen 543 EFLRKNKPGWEQTIGKVIDEEL-LYRTDLEP 572 (1201)
T ss_pred HHHHhCCCcHHHHhHhhCCHHH-hcCCCCCC
Confidence 44433333332 4455443333 44455555
No 209
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=5.1e+02 Score=25.69 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhhh-hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 152 KEKLVKRVGKIIDEVLMVQTEIESLKGE-KVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 152 ke~L~~Ra~kI~d~~l~~krE~ekLlg~-~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
.+++..|++++++.....+..+.+---. +.|..+|+....+||.+-..|..-+|=+-+..
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 210
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.24 E-value=3e+02 Score=25.09 Aligned_cols=15 Identities=33% Similarity=0.115 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 040683 141 MYTELRELRLEKEKL 155 (251)
Q Consensus 141 ly~elr~lkkeke~L 155 (251)
+|.|=.+||++...|
T Consensus 71 l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 71 LEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 211
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.19 E-value=3.5e+02 Score=21.51 Aligned_cols=38 Identities=29% Similarity=0.670 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHhhhhhhHh--hhhh---hhhhhhhhhhhhHh
Q 040683 192 TMEREYDELWERVGEIDDKM--LRRE---TVAMSIGVRELCFI 229 (251)
Q Consensus 192 ~~E~Eyneiweki~EIeD~i--lRrE---T~amSiGVrEL~FI 229 (251)
.+|+|-+.|-+++..-|.+. ||+| +|++|.-+.=+||+
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~~ls~~l~~v~~L 82 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENRKSMLLSVALFFVCFL 82 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 45577777777777777654 6666 79999888877775
No 212
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=20.06 E-value=4e+02 Score=20.30 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=27.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSR 242 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~ 242 (251)
..+.+.+..++.--++|...-..+++...--..+.-...-.....|+..+++|..+|..
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 197 (213)
T cd00176 139 ESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEE 197 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333333333333223332222323336777777777777653
Done!