Query 040683
Match_columns 251
No_of_seqs 6 out of 8
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 17:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 89.5 8.7 0.0003 32.3 14.4 106 118-223 64-175 (256)
2 2fxo_A Myosin heavy chain, car 84.6 9.8 0.00034 29.5 9.8 90 104-211 10-99 (129)
3 2dfs_A Myosin-5A; myosin-V, in 83.6 22 0.00074 36.4 14.3 32 184-215 1019-1050(1080)
4 3qne_A Seryl-tRNA synthetase, 78.3 13 0.00044 35.3 10.0 88 115-204 14-108 (485)
5 3hnw_A Uncharacterized protein 73.9 29 0.00098 27.7 9.6 98 94-207 29-129 (138)
6 2olt_A Hypothetical protein; s 73.1 34 0.0012 27.4 17.9 161 87-247 18-187 (227)
7 1i84_S Smooth muscle myosin he 71.7 14 0.00047 37.5 8.8 12 24-35 672-684 (1184)
8 1c1g_A Tropomyosin; contractIl 69.5 33 0.0011 25.8 13.3 8 86-93 13-20 (284)
9 3mq1_A Mite allergen DER P 5; 69.4 18 0.00061 28.8 7.2 66 183-248 6-83 (103)
10 2dq0_A Seryl-tRNA synthetase; 69.2 49 0.0017 30.6 11.3 55 115-170 10-65 (455)
11 1wle_A Seryl-tRNA synthetase; 64.5 60 0.0021 30.6 11.1 30 141-170 75-104 (501)
12 2jmh_A BLO T 5, mite allergen 63.1 26 0.0009 28.5 7.2 77 172-248 15-98 (119)
13 3uul_A Utrophin; spectrin repe 62.0 37 0.0013 23.6 10.9 27 182-208 79-105 (118)
14 3a7p_A Autophagy protein 16; c 56.7 72 0.0025 26.6 9.0 54 141-204 80-133 (152)
15 1i84_S Smooth muscle myosin he 56.6 24 0.00081 35.8 7.2 17 118-134 882-898 (1184)
16 3uun_A Dystrophin; triple heli 55.9 47 0.0016 22.9 12.4 100 87-208 6-105 (119)
17 3i00_A HIP-I, huntingtin-inter 55.6 39 0.0013 26.7 6.9 33 135-167 14-46 (120)
18 2akf_A Coronin-1A; coiled coil 53.8 13 0.00044 24.3 3.2 28 184-211 2-29 (32)
19 3oq9_A Tumor necrosis factor r 53.7 3.9 0.00013 30.6 0.8 67 68-137 15-84 (86)
20 3oja_B Anopheles plasmodium-re 52.6 1.3E+02 0.0044 26.9 12.9 9 230-238 571-579 (597)
21 3na7_A HP0958; flagellar bioge 52.2 1E+02 0.0035 25.7 12.2 74 142-215 31-110 (256)
22 2dq0_A Seryl-tRNA synthetase; 50.4 1.1E+02 0.0037 28.3 10.0 25 181-205 83-107 (455)
23 2dq3_A Seryl-tRNA synthetase; 49.9 71 0.0024 29.0 8.7 69 135-204 30-105 (425)
24 2zqm_A Prefoldin beta subunit 47.8 76 0.0026 22.9 8.2 28 183-210 79-106 (117)
25 2yxh_A MAZG-related protein; T 47.8 89 0.003 23.7 8.3 83 100-194 3-95 (116)
26 2efr_A General control protein 46.9 1.2E+02 0.0041 24.9 13.3 124 83-210 15-148 (155)
27 2lm9_A BLO T 21 allergen; DUST 42.5 67 0.0023 25.3 6.3 66 183-248 7-77 (96)
28 2akf_A Coronin-1A; coiled coil 42.0 40 0.0014 21.9 4.1 28 139-166 2-29 (32)
29 1ic2_A Tropomyosin alpha chain 41.7 94 0.0032 22.2 7.7 20 146-165 9-28 (81)
30 3vkg_A Dynein heavy chain, cyt 41.6 3E+02 0.01 32.0 13.5 25 180-204 2034-2058(3245)
31 3qne_A Seryl-tRNA synthetase, 39.7 1.6E+02 0.0056 27.8 9.7 70 142-211 32-101 (485)
32 1ykh_B RNA polymerase II holoe 39.6 63 0.0022 25.4 5.9 40 130-169 86-125 (132)
33 3bas_A Myosin heavy chain, str 39.6 1.1E+02 0.0038 22.4 7.8 26 180-205 62-87 (89)
34 1oxz_A ADP-ribosylation factor 38.7 1.5E+02 0.0053 24.8 8.4 80 97-179 69-153 (186)
35 2dfs_A Myosin-5A; myosin-V, in 37.3 3.6E+02 0.012 27.7 13.7 11 101-111 925-935 (1080)
36 1yke_B RNA polymerase II holoe 35.7 75 0.0026 25.8 5.9 40 130-169 86-125 (151)
37 1ses_A Seryl-tRNA synthetase; 35.5 62 0.0021 29.5 5.9 65 140-204 32-101 (421)
38 3vkg_A Dynein heavy chain, cyt 34.7 6.1E+02 0.021 29.6 16.0 56 180-236 2013-2068(3245)
39 3lss_A Seryl-tRNA synthetase; 34.7 2E+02 0.0067 27.3 9.3 31 141-171 42-72 (484)
40 3iv1_A Tumor susceptibility ge 34.6 1.4E+02 0.0049 22.3 7.5 51 125-175 7-57 (78)
41 2fic_A Bridging integrator 1; 34.6 1.8E+02 0.0062 23.4 14.6 117 86-203 76-201 (251)
42 2ap3_A Conserved hypothetical 33.2 61 0.0021 27.7 5.2 105 89-215 9-114 (199)
43 3okq_A BUD site selection prot 31.9 1.6E+02 0.0056 24.3 7.3 23 181-203 68-90 (141)
44 1l8d_A DNA double-strand break 31.5 1.5E+02 0.005 21.5 10.0 32 123-155 5-36 (112)
45 3bas_A Myosin heavy chain, str 31.3 1.5E+02 0.0052 21.6 11.1 26 186-211 40-65 (89)
46 3u59_A Tropomyosin beta chain; 31.0 1.6E+02 0.0055 21.7 11.4 67 138-207 4-70 (101)
47 2dq3_A Seryl-tRNA synthetase; 30.1 1.4E+02 0.0046 27.2 7.2 66 141-206 28-100 (425)
48 3l39_A Putative PHOU-like phos 29.8 2.3E+02 0.0078 23.1 16.8 149 89-245 33-186 (227)
49 1naf_A ADP-ribosylation factor 29.2 2.2E+02 0.0077 23.3 7.7 46 134-179 89-137 (158)
50 1zvu_A Topoisomerase IV subuni 28.8 4.6E+02 0.016 26.4 11.4 46 190-243 404-449 (716)
51 2p22_C Protein SRN2; endosome, 28.3 2.2E+02 0.0076 23.8 7.7 19 183-201 95-113 (192)
52 1ic2_A Tropomyosin alpha chain 28.3 1.6E+02 0.0056 20.9 9.1 24 148-171 4-27 (81)
53 3ezq_A Tumor necrosis factor r 28.3 16 0.00056 28.8 0.7 69 68-139 23-94 (115)
54 3twe_A Alpha4H; unknown functi 28.1 64 0.0022 20.2 3.2 19 140-158 5-23 (27)
55 2pnv_A Small conductance calci 27.5 1.4E+02 0.0049 20.1 5.2 20 185-204 20-39 (43)
56 2wuj_A Septum site-determining 27.4 81 0.0028 21.6 4.1 35 115-157 21-55 (57)
57 1t2k_D Cyclic-AMP-dependent tr 27.2 1.2E+02 0.0043 20.5 5.0 35 180-214 21-55 (61)
58 3iv1_A Tumor susceptibility ge 26.3 2.1E+02 0.0071 21.5 10.2 54 154-210 11-75 (78)
59 3mq7_A Bone marrow stromal ant 26.2 2.6E+02 0.009 22.7 7.4 38 100-137 39-80 (121)
60 1jnm_A Proto-oncogene C-JUN; B 26.0 1E+02 0.0036 21.0 4.5 34 180-213 21-54 (62)
61 2v71_A Nuclear distribution pr 25.7 3.1E+02 0.01 23.3 13.2 32 186-217 128-159 (189)
62 2w83_C C-JUN-amino-terminal ki 25.7 1.7E+02 0.0059 22.1 5.9 43 152-197 32-74 (77)
63 1o3x_A ADP-ribosylation factor 25.2 2.6E+02 0.0089 22.2 8.1 46 134-179 80-128 (140)
64 2bzb_A Conserved domain protei 23.7 1.5E+02 0.005 21.0 5.0 41 139-179 4-44 (62)
65 1fxk_A Prefoldin; archaeal pro 23.0 2E+02 0.007 20.3 8.3 28 183-210 67-94 (107)
66 1ich_A TNF-1, tumor necrosis f 23.0 59 0.002 25.5 3.0 70 56-128 13-87 (112)
67 3efg_A Protein SLYX homolog; x 22.9 1.8E+02 0.0061 21.2 5.4 50 184-241 10-59 (78)
68 3etw_A Adhesin A; antiparallel 22.9 2.9E+02 0.0099 22.0 8.9 50 183-245 36-85 (119)
69 1gxg_A Colicin E8 immunity pro 22.0 80 0.0027 23.7 3.5 34 86-125 5-38 (85)
70 1uru_A Amphiphysin; endocytosi 22.0 2.9E+02 0.01 21.7 14.1 115 86-201 61-186 (244)
71 2jee_A YIIU; FTSZ, septum, coi 21.9 2.6E+02 0.0089 21.1 8.3 55 153-207 9-74 (81)
72 2paq_A 5'-deoxynucleotidase YF 21.4 1.3E+02 0.0044 24.6 4.9 30 94-123 136-165 (201)
73 1j1d_C Troponin I, TNI; THIN f 21.3 1.4E+02 0.0048 24.1 5.0 21 190-210 60-80 (133)
74 3qks_A DNA double-strand break 20.8 1.2E+02 0.0042 23.8 4.5 45 171-215 151-195 (203)
75 1xx7_A Oxetanocin-like protein 20.5 57 0.0019 26.7 2.6 54 94-150 129-182 (184)
76 3m91_A Proteasome-associated A 20.2 2.1E+02 0.0071 19.7 5.0 33 144-176 10-42 (51)
77 2o6n_A RH4B designed peptide; 20.2 1.7E+02 0.0057 19.2 4.2 31 143-173 2-33 (35)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.46 E-value=8.7 Score=32.32 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhchHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHh
Q 040683 118 RAKLALKAVKMRKEELQDEIMSG-MYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGT 192 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ~EIms~-ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~ 192 (251)
+.+.-+..++.+-...++..++. =..|+..|.+|.+.+..|-...=++.+.+..+.+.+-.. ...++.+...+..
T Consensus 64 ~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 64 KNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444442 345666666666666666666666666555555543222 2223333333333
Q ss_pred hHHHHHHHHHHh-hhhhhHhhhhhhhhhhhhh
Q 040683 193 MEREYDELWERV-GEIDDKMLRRETVAMSIGV 223 (251)
Q Consensus 193 ~E~Eyneiweki-~EIeD~ilRrET~amSiGV 223 (251)
...+++.....+ .+++....+|+.++-+|.-
T Consensus 144 ~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 144 LESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 333333333333 2233333456655555543
No 2
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.63 E-value=9.8 Score=29.52 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhh
Q 040683 104 KIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGA 183 (251)
Q Consensus 104 k~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~ 183 (251)
++.++++.-+-.++.++..|......+.+|+.. +..|-.+.-+|. ..++.|.+.|.-..+..
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~-~~~l~~Ek~~L~-----------------~qL~~E~~~l~e~EE~~ 71 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEK-MVSLLQEKNDLQ-----------------LQVQAEQDNLADAEERC 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHH
Confidence 455666666666777777776666666655544 222222222222 22233444444444455
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
++|-.+-..||..+.++-+++++.||+.
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~ 99 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666655543
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.59 E-value=22 Score=36.42 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhh
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~ilRrE 215 (251)
++|++.+..|+++=..+-..+++++..+...+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999997777665
No 4
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.25 E-value=13 Score=35.33 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHhhhhh----hhhhHHHH
Q 040683 115 DVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTE---IESLKGE----KVGAEELL 187 (251)
Q Consensus 115 d~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE---~ekLlg~----~~~~~~L~ 187 (251)
+.+.|..+|+.=... ..+=++|+ .|+.+-|.+..+.+.|..+-..+..++-.+++. .+.|+-. ++.+..|+
T Consensus 14 n~~~v~~~~~~R~~~-~~~~~~~~-~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le 91 (485)
T 3qne_A 14 DPEIIKASQKKRGDS-VELVDEII-AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEII 91 (485)
T ss_dssp CHHHHHHHHHHHTCC-SHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 777777777653332 22334443 578889999999999998888888877665542 2222222 33344555
Q ss_pred HHHHhhHHHHHHHHHHh
Q 040683 188 DMIGTMEREYDELWERV 204 (251)
Q Consensus 188 e~m~~~E~Eyneiweki 204 (251)
+.+..+|.+.+.+.-.|
T Consensus 92 ~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 92 EKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 55555555554444443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.94 E-value=29 Score=27.74 Aligned_cols=98 Identities=10% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCChHHHHHH-HHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040683 94 RLLETVSNLLKIVEEVRGG--NGDVKRAKLA-LKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQ 170 (251)
Q Consensus 94 rLLetVs~lLk~ieeVR~g--ngd~k~v~~A-Lk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~k 170 (251)
.|.....-|=+-|.+++.. ++.+..-..| |-|+- +-.|+-+++.+.+.|....+..-.+....|
T Consensus 29 ~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALN-------------iadEl~k~~~~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLN-------------IADDYFKAKKMADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555677788844 5544333322 22221 123444455555555555555555555555
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 171 TEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 171 rE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
.|.-++ ...++.+...+..+.++++.+..++.+.
T Consensus 96 ~el~~~---~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 96 HELIAA---QIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554441 2223333444444444444444444433
No 6
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=73.07 E-value=34 Score=27.38 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=90.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhhhchHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHH
Q 040683 87 EYADYTRRLLETVSNLLKIVEEVRGGNG-DVKRAKLALKAVKMRKEELQDEIMSGMYTEL--RELRLEKEKLVKRVGKII 163 (251)
Q Consensus 87 EYSd~TrrLLetVs~lLk~ieeVR~gng-d~k~v~~ALk~VKlkKeelQ~EIms~ly~el--r~lkkeke~L~~Ra~kI~ 163 (251)
.+..|+..+.+.+.-|...++....|+. ++++.-..++...-+-.++..+|+..|+.-. --=+...-.|...-|.|.
T Consensus 18 ~l~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~L~~~~~~P~dredi~~L~~~lD~I~ 97 (227)
T 2olt_A 18 PLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIA 97 (227)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHH
Confidence 3677888999999999888888877663 3333333344444555678889998887410 000022333344445555
Q ss_pred HHHHHhhHHHHhh--hhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhh----hhhhhhhhhhhhhhhHhHHHHHHHH
Q 040683 164 DEVLMVQTEIESL--KGEKVGAEELLDMIGTMEREYDELWERVGEIDDKML----RRETVAMSIGVRELCFIERECEELV 237 (251)
Q Consensus 164 d~~l~~krE~ekL--lg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~il----RrET~amSiGVrEL~FIeREce~LV 237 (251)
|.+-++=.-..-. -...+....+.+..+..-+-...+-+-+.++.+.+. +++.-.+.--+.++.-+|.+|..+-
T Consensus 98 D~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~l~~l~e~~~~~~~~~~~~~~~~~i~~lE~~~D~l~ 177 (227)
T 2olt_A 98 NKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQ 177 (227)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333332221 011334455666666666666666666666643211 0111112223677888888888888
Q ss_pred HHHHHHHHhh
Q 040683 238 KRFSREMRRR 247 (251)
Q Consensus 238 ~rF~~Emr~~ 247 (251)
.++.+.+..+
T Consensus 178 ~~~~~~Lf~~ 187 (227)
T 2olt_A 178 IQLRRQLFAL 187 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8877776643
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.65 E-value=14 Score=37.51 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=6.8
Q ss_pred ccccccccee-ee
Q 040683 24 TLKGKTESAI-SV 35 (251)
Q Consensus 24 ~~~~~~~~~i-ci 35 (251)
++..+.-.+| ||
T Consensus 672 ~l~~t~phfvRCI 684 (1184)
T 1i84_S 672 TLRNTNPNFVRCI 684 (1184)
T ss_dssp HHTTSEEEECCEE
T ss_pred HHHhcCCCceeee
Confidence 3445555666 75
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=69.54 E-value=33 Score=25.78 Aligned_cols=8 Identities=0% Similarity=-0.118 Sum_probs=3.5
Q ss_pred CcchhHHH
Q 040683 86 HEYADYTR 93 (251)
Q Consensus 86 HEYSd~Tr 93 (251)
|+|..+..
T Consensus 13 ~~~~~~~~ 20 (284)
T 1c1g_A 13 LDKENALD 20 (284)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 44544433
No 9
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=69.41 E-value=18 Score=28.84 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhh--------hHhhhhhhhhhhhhhhhhhHhHHHHH----HHHHHHHHHHHhhh
Q 040683 183 AEELLDMIGTMEREYDELWERVGEID--------DKMLRRETVAMSIGVRELCFIERECE----ELVKRFSREMRRRS 248 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIe--------D~ilRrET~amSiGVrEL~FIeREce----~LV~rF~~Emr~~s 248 (251)
|..++++|..+|.---.+-+.|.++| ++|+|-=|++..+=--=.-|+|||.. +++.+||-|.-+.+
T Consensus 6 v~~~~~~~~k~E~~Ll~Ls~Qi~~LEktKsKe~K~~IlrEi~~~~~~i~Ga~~~lerElkRtDLnilEkfNfE~al~t 83 (103)
T 3mq1_A 6 MERIHEQIKKGELALFYLQEQINHFEEKPTKEMKDKIVAEMDTIIAMIDGVRGVLDRLMQRKDLDIFEQYNLEMAKKS 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhHHHHHHH
Confidence 44555555555555555555555554 67777656554443333468999986 69999999876654
No 10
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.17 E-value=49 Score=30.58 Aligned_cols=55 Identities=25% Similarity=0.151 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHhhh-chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040683 115 DVKRAKLALKAVKM-RKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQ 170 (251)
Q Consensus 115 d~k~v~~ALk~VKl-kKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~k 170 (251)
+.+.|..+|+.=.. ....+=++|+ .|+.+-|.+..+.+.|..+-.++..++-.++
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~-~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~ 65 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEIL-KLDTEWRTKLKEINRLRHERNKIAVEIGKRR 65 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555543332 1012234443 4788888888888888888888877776544
No 11
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=64.50 E-value=60 Score=30.65 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040683 141 MYTELRELRLEKEKLVKRVGKIIDEVLMVQ 170 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~kI~d~~l~~k 170 (251)
|+.+-|++..+.+.|..+-.++..++-.++
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666666666665555443
No 12
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=63.11 E-value=26 Score=28.46 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=44.5
Q ss_pred HHHhhhhh--hhhhHHHHHHHHhhHHHHHHHHH-HhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHH----HHHHHHHHHH
Q 040683 172 EIESLKGE--KVGAEELLDMIGTMEREYDELWE-RVGEIDDKMLRRETVAMSIGVRELCFIERECE----ELVKRFSREM 244 (251)
Q Consensus 172 E~ekLlg~--~~~~~~L~e~m~~~E~Eyneiwe-ki~EIeD~ilRrET~amSiGVrEL~FIeREce----~LV~rF~~Em 244 (251)
|.|.||-. .++|.++|..+-.+-.+|+++=+ +=.++-++|+|-=|++..+=---.-|+|||.. +++.+||-|.
T Consensus 15 EFD~LLv~~~~~~~~k~E~~Ll~Ls~Qi~~LE~tKsKe~K~~IlrEi~~~~~~i~Ga~~~lerElkRtDLnilEkfNfE~ 94 (119)
T 2jmh_A 15 EFDHLLIEQANHAIEKGEHQLLYLQHQLDELNENKSKELQEKIIRELDVVCAMIEGAQGALERELKRTDLNILERFNYEE 94 (119)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhHHH
Confidence 44444433 34444444444444444444432 22344567777666655443334468999986 6999999987
Q ss_pred Hhhh
Q 040683 245 RRRS 248 (251)
Q Consensus 245 r~~s 248 (251)
-+.+
T Consensus 95 al~t 98 (119)
T 2jmh_A 95 AQTL 98 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 13
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=61.98 E-value=37 Score=23.62 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=21.3
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 182 GAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 182 ~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
....+.++++.+...|+.|..+..+-.
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~ 105 (118)
T 3uul_A 79 EEFEIQEQMTLLNARWEALRVESMERQ 105 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688899999999999988776543
No 14
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.72 E-value=72 Score=26.63 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 141 MYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
+=..+++|..+.+.-.+-.+-+-|+.+.++-+..- +++++..+++|++.+-+|.
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~----------lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNV----------LQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 33444455555444445666677777777777666 8899999999999887764
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=56.57 E-value=24 Score=35.84 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhchHHHH
Q 040683 118 RAKLALKAVKMRKEELQ 134 (251)
Q Consensus 118 ~v~~ALk~VKlkKeelQ 134 (251)
+++..+....-++.+++
T Consensus 882 ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 16
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=55.93 E-value=47 Score=22.92 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=53.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 87 EYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEV 166 (251)
Q Consensus 87 EYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~ 166 (251)
.|.+-.+.|+.-++..-..+.....-.+|...|..-++..+ .+..++..-+...+.+...+..++...
T Consensus 6 ~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~------------~l~~ei~~~~~~v~~~~~~g~~L~~~~ 73 (119)
T 3uun_A 6 RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHE------------GYMMDLTAHQGRVGNILQLGSKLIGTG 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH------------HHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 45555555555555444444333333456666665555433 233333334444455555555444321
Q ss_pred HHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhh
Q 040683 167 LMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEID 208 (251)
Q Consensus 167 l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIe 208 (251)
- ...+....+.++++.+...|+.|.....+--
T Consensus 74 ~----------~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~ 105 (119)
T 3uun_A 74 K----------LSEDEETEVQEQMNLLNSRWECLRVASMEKQ 105 (119)
T ss_dssp C----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123355688899999999999988776543
No 17
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.55 E-value=39 Score=26.70 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=25.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 135 DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVL 167 (251)
Q Consensus 135 ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l 167 (251)
+.+...||.|+-.|+.+.+.+.-.+..++.+.-
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~ 46 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLK 46 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888777776543
No 18
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=53.78 E-value=13 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
.+|||.+.++.---.++++|+|-+||-.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888899998888743
No 19
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=53.68 E-value=3.9 Score=30.63 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=51.6
Q ss_pred hhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc--hHHHHHHH
Q 040683 68 LDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMR--KEELQDEI 137 (251)
Q Consensus 68 w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlk--KeelQ~EI 137 (251)
||+. .+--..|+++..-.|.|...++ |.+-.+|+.=..--+..|.+..+-.||+..++. .+.+|+.+
T Consensus 15 wK~~~R~LGlse~~Id~I~~~~~~d~~---Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~~l~~~Ad~I~~~l 84 (86)
T 3oq9_A 15 AKKFARENNIKEGKIDEIMHDSIQDTA---EQKVQLLLCWYQSHGKSDAYQDLIKGLKKAECRRTLDKFQDMV 84 (86)
T ss_dssp HHHHHHTTTSCHHHHHHHHHTCTTCCT---THHHHHHHHHHHHSCSSSHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHhHHHHHHHhCCCChH---HHHHHHHHHHHHHhCcchHHHHHHHHHHHccchhHHHHHHHHH
Confidence 8888 5556778777777777665554 999999999998888889999999999998765 35555543
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.59 E-value=1.3e+02 Score=26.90 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 040683 230 ERECEELVK 238 (251)
Q Consensus 230 eREce~LV~ 238 (251)
..|..+|.+
T Consensus 571 ~~~~~~l~~ 579 (597)
T 3oja_B 571 RQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.20 E-value=1e+02 Score=25.73 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhh--HHHHHHHHHHhhhhhhHhhhhh
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTM--EREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~--E~Eyneiweki~EIeD~ilRrE 215 (251)
-.++.+|..+...+..+...+-.++-.+++++.++-.. +..+.+..++++.. .++|+.+...|+-.+..+...|
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888877777777777777777765444 55577777777654 5677777765555554444333
No 22
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.44 E-value=1.1e+02 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 181 VGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 181 ~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
+.+..|++.+..++.+.+.+.-.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 83 KRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344566666666666555554443
No 23
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.93 E-value=71 Score=29.05 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=41.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 135 DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTE---IESLKGE----KVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 135 ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE---~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
++|+ .|+.+-|.+..+.+.|..+-.++..++-.+++. .+.|+-. ++.+..|++.+..++++.+.+.-.|
T Consensus 30 ~~~~-~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 30 DKVL-ELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4443 478888888888888888888887776654432 2222221 3445555556665555555555544
No 24
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.85 E-value=76 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=12.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ 210 (251)
++.++..+..+++.+..+-..+.++...
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 25
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=47.79 E-value=89 Score=23.70 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCC-ChHH---HHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 040683 100 SNLLKIVEEVRGGNG-DVKR---AKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIES 175 (251)
Q Consensus 100 s~lLk~ieeVR~gng-d~k~---v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ek 175 (251)
+.|+.+| .|+.+| |-.+ ..-.+..+.-+-+|+...|-++ ..+.+.+-.|.++..+++.-+-.+.
T Consensus 3 ~~l~~i~--lR~~~G~~W~~~qt~~~l~~~l~EE~~El~eai~~~----------d~~~l~eElGDlLf~vv~la~~~~~ 70 (116)
T 2yxh_A 3 ERLLEII--ERSLRKCPWLEKQSIETLLEALASEIEEVAEAVKKN----------DLANLEEEIGDMIYDALLVAAVAQR 70 (116)
T ss_dssp HHHHHHH--HHHHHHCHHHHTCCHHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--ccCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455555 555444 3332 4555566655666666555432 2345556667778888877766544
Q ss_pred hhhh------hhhhHHHHHHHHhhH
Q 040683 176 LKGE------KVGAEELLDMIGTME 194 (251)
Q Consensus 176 Llg~------~~~~~~L~e~m~~~E 194 (251)
..|. +.-+.++..|-..++
T Consensus 71 ~~~~d~e~al~~~~~K~~rR~~~v~ 95 (116)
T 2yxh_A 71 DYGIDLESAIQKVVEKISHRKPWLF 95 (116)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCGGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHh
Confidence 3333 233444555554444
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=46.88 E-value=1.2e+02 Score=24.94 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHH------HHHHHHhHHHHHHHHHHHHHHHH
Q 040683 83 EKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEEL------QDEIMSGMYTELRELRLEKEKLV 156 (251)
Q Consensus 83 ~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeel------Q~EIms~ly~elr~lkkeke~L~ 156 (251)
..|+.|...+| +=..|=++-+-.-...+-+.+++..|+.|--.---| -.+-+...=..++.|.....-..
T Consensus 15 ~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 15 KNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777 222333444555555555556666665543211111 11334445567888888888888
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683 157 KRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 157 ~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ 210 (251)
.||+.--..|.++.+++|+|=.. +.....+.+.|+..=.+.+.+..+..+++.-
T Consensus 91 ~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~ 148 (155)
T 2efr_A 91 TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 89998888888888888883222 2223333333443333444444444444433
No 27
>2lm9_A BLO T 21 allergen; DUST mite; NMR {Blomia tropicalis}
Probab=42.51 E-value=67 Score=25.27 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhHHHHHHHHH-HhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHH----HHHHHHHHHHHhhh
Q 040683 183 AEELLDMIGTMEREYDELWE-RVGEIDDKMLRRETVAMSIGVRELCFIERECE----ELVKRFSREMRRRS 248 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiwe-ki~EIeD~ilRrET~amSiGVrEL~FIeREce----~LV~rF~~Emr~~s 248 (251)
+.++|..+-.+-.+|+++=. +=.++-++|+|-=|++..+---=--|+|||.. +++.+||-|.-+.+
T Consensus 7 ~~~~E~~Ll~Ls~Qi~~LEktksK~~K~~IlrEi~~~~~~i~ga~~~lerElkRtDLnilEkfNfE~al~t 77 (96)
T 2lm9_A 7 FHEIEKFLLHITHEVDDLEKTGNKDEKARLLRELTVSEAFIEGSRGYFQRELKRTDLDLLEKFNFEAALAT 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHhcHHHHHHH
Confidence 33344444444444444322 22345567777656554443333468899986 68999999876654
No 28
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.96 E-value=40 Score=21.95 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 139 SGMYTELRELRLEKEKLVKRVGKIIDEV 166 (251)
Q Consensus 139 s~ly~elr~lkkeke~L~~Ra~kI~d~~ 166 (251)
|+|-.++|.|.-=-.+|++|.|..-|-|
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888988888888888888765543
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.68 E-value=94 Score=22.21 Aligned_cols=20 Identities=25% Similarity=0.435 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040683 146 RELRLEKEKLVKRVGKIIDE 165 (251)
Q Consensus 146 r~lkkeke~L~~Ra~kI~d~ 165 (251)
.-|+.++|....|++..-..
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~ 28 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEAD 28 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554433
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.59 E-value=3e+02 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
+..+.+|++++..+..+|++.-..-
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777776544333
No 31
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=39.68 E-value=1.6e+02 Score=27.83 Aligned_cols=70 Identities=23% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
-.++-+|-.+...++...+.+--+-=.+.+++-+++..++-++.|-+.+..+-.+-..+-+.+.++|+.+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777766666666666666554444345555555555555555544444444443
No 32
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.61 E-value=63 Score=25.43 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040683 130 KEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMV 169 (251)
Q Consensus 130 KeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~ 169 (251)
-++.|-+-|.+|..|+++..+++....+++++.+..+=.+
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999988776444
No 33
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.59 E-value=1.1e+02 Score=22.40 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVG 205 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~ 205 (251)
.+..++|..+-..||..+.++-+|++
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455555555555555555544
No 34
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=38.65 E-value=1.5e+02 Score=24.78 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc-hHHH-HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhH
Q 040683 97 ETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMR-KEEL-QDEIMSGMYTELRELRLEKEKLVKRV---GKIIDEVLMVQT 171 (251)
Q Consensus 97 etVs~lLk~ieeVR~gngd~k~v~~ALk~VKlk-Keel-Q~EIms~ly~elr~lkkeke~L~~Ra---~kI~d~~l~~kr 171 (251)
+-++-++..|++||. -++=+..-|....-- .... ..|+|..||.-.+..+-..-.|.... +..+.++|.++-
T Consensus 69 e~~~k~~~eLe~V~~---nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND 145 (186)
T 1oxz_A 69 EKISKRVNAIEEVNN---NVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAND 145 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhH
Confidence 444444444444442 233333334444331 1123 56899999999999999999999765 469999999999
Q ss_pred HHHhhhhh
Q 040683 172 EIESLKGE 179 (251)
Q Consensus 172 E~ekLlg~ 179 (251)
+.-.++..
T Consensus 146 ~Ln~vl~k 153 (186)
T 1oxz_A 146 NLTQVINL 153 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887766
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.29 E-value=3.6e+02 Score=27.67 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc
Q 040683 101 NLLKIVEEVRG 111 (251)
Q Consensus 101 ~lLk~ieeVR~ 111 (251)
.|-.-|+++..
T Consensus 925 ~LE~kl~eLq~ 935 (1080)
T 2dfs_A 925 GLENKIMQLQR 935 (1080)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 36
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.73 E-value=75 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040683 130 KEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMV 169 (251)
Q Consensus 130 KeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~ 169 (251)
-++.|-+-|.+|-.|+++..+++....+++++.+..+=.+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999888766444
No 37
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.49 E-value=62 Score=29.48 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683 140 GMYTELRELRLEKEKLVKRVGKIIDEVLM-VQTEIESLKGE----KVGAEELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~-~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki 204 (251)
.|+.+-|++..+.+.|..+-.++..++-. .+.+.+.|+-. ++.+..|++.+..++.+.+.+.-.|
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46666677777777766666666655442 11222332222 3334445555555555544444333
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.70 E-value=6.1e+02 Score=29.62 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHH
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEEL 236 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~L 236 (251)
+...+++++.+..-+.+.+++..+|.++|+.+..-. --+.-.++|---++.|.+..
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~-~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYK-EEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 556777777888888888888888888888765432 22344456666666665543
No 39
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.66 E-value=2e+02 Score=27.28 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 040683 141 MYTELRELRLEKEKLVKRVGKIIDEVLMVQT 171 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~kI~d~~l~~kr 171 (251)
|+.+-|.+..+.+.|..+-..+..++-++++
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555554444333
No 40
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.62 E-value=1.4e+02 Score=22.33 Aligned_cols=51 Identities=25% Similarity=0.217 Sum_probs=34.0
Q ss_pred HhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 040683 125 AVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIES 175 (251)
Q Consensus 125 ~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ek 175 (251)
||--|--.-..|+|+..-+||--|++-.+.|..=--||-+++-..++|...
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 443343444677888888888888887777776666666666666666555
No 41
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=34.56 E-value=1.8e+02 Score=23.41 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=63.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCC-ChHH---HHHHHH-HhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGNG-DVKR---AKLALK-AVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVG 160 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gng-d~k~---v~~ALk-~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~ 160 (251)
..|.++.+.++.+-..+-.+|.++-+... +... +..+++ .+.-=.+.+...++.-|-.=+..++.=+..+.+|.+
T Consensus 76 k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~ 155 (251)
T 2fic_A 76 RTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGR 155 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777777778777788888888654332 2222 233333 122222334444444444434444444566777888
Q ss_pred HHHHHHHHhhHHHHhhhhhh----hhhHHHHHHHHhhHHHHHHHHHH
Q 040683 161 KIIDEVLMVQTEIESLKGEK----VGAEELLDMIGTMEREYDELWER 203 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg~~----~~~~~L~e~m~~~E~Eyneiwek 203 (251)
+.+|-- .+++.+.+|--++ ..+.+.++.+..-..+|+.+=+.
T Consensus 156 k~lDyD-~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~ 201 (251)
T 2fic_A 156 KLVDYD-SARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVD 201 (251)
T ss_dssp HHHHHH-HHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHH-HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888763 3344455544332 24667777777777777765433
No 42
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=33.18 E-value=61 Score=27.72 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040683 89 ADYTRRLLETVSNLL-KIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVL 167 (251)
Q Consensus 89 Sd~TrrLLetVs~lL-k~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l 167 (251)
++|+-. ...-.+. ..++..-+-.-++.++..-|...--++.+|-++||..=+.+ ...-|++++.-+
T Consensus 9 tgC~~~--~~e~~~y~~~leka~~~Ek~~~~~qkkL~~LEkk~q~LY~qI~~~~~~~----------v~~~adqa~~nv- 75 (199)
T 2ap3_A 9 TSTTTD--KKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAV----------RGKAVKDLIKNA- 75 (199)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGCSSHHH----------HHHHHHHHHHHH-
T ss_pred hccCCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHhH-
Confidence 456532 2233344 66777777777888888888888888888888888322322 222233333222
Q ss_pred HhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhh
Q 040683 168 MVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 168 ~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrE 215 (251)
-+-+++|.. =.+.|+.-++++..+-..|+.|+|.-++++
T Consensus 76 ---~eRek~l~k------Ek~si~~s~kef~~~k~~i~kIeD~~~Kkq 114 (199)
T 2ap3_A 76 ---DDRLKEFEK------EEDAIKKSEQDFKKAKSHVDNIDNDVKRKE 114 (199)
T ss_dssp ---HHHHHHHHH------HHHHHHHHHHHHTTC-----CCCCHHHHHH
T ss_pred ---HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 222222222 234455555555555555666655555443
No 43
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=31.88 E-value=1.6e+02 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHH
Q 040683 181 VGAEELLDMIGTMEREYDELWER 203 (251)
Q Consensus 181 ~~~~~L~e~m~~~E~Eyneiwek 203 (251)
..+..|.+-|.+..--|.+|||+
T Consensus 68 ~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 68 ADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchhHHHHHH
Confidence 34666888888888899999995
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.49 E-value=1.5e+02 Score=21.47 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=12.7
Q ss_pred HHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040683 123 LKAVKMRKEELQDEIMSGMYTELRELRLEKEKL 155 (251)
Q Consensus 123 Lk~VKlkKeelQ~EIms~ly~elr~lkkeke~L 155 (251)
|+.++-+..+++.+|- .|.....+++.+...+
T Consensus 5 ~~~~~~~~~~~~~~l~-~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 5 LEELETKKTTIEEERN-EITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3333334444443332 2444444444444433
No 45
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.35 E-value=1.5e+02 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=12.5
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDKM 211 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~i 211 (251)
|++.+..+..++|.|...+.++||..
T Consensus 40 le~~~~~l~~ek~~L~~ql~eaEe~~ 65 (89)
T 3bas_A 40 LEEQNVTLLEQKNDLFGSMKQLEDKV 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44445555555555544444444443
No 46
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.04 E-value=1.6e+02 Score=21.74 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
|..+=.-|.-|+.++|..++||+..=..+-.+.....++- .-+.-|-.++..+|.++....+++.+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E---~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLE---EEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445667788888888888877666555554444421 123334444444444444444444433
No 47
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.13 E-value=1.4e+02 Score=27.22 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh-------hHHHHHHHHhhHHHHHHHHHHhhh
Q 040683 141 MYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVG-------AEELLDMIGTMEREYDELWERVGE 206 (251)
Q Consensus 141 ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~-------~~~L~e~m~~~E~Eyneiweki~E 206 (251)
+-.++-+|-.+...++.+.+.+-.+--.+.+++-++...++. +..|-+.+..+|.+.+++.+.+.+
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999888777776677777665554332 555666666666666666555543
No 48
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=29.77 E-value=2.3e+02 Score=23.12 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhh---hchHHHHHHHHHhHHHHH-HH-HHHHHHHHHHHHHHHH
Q 040683 89 ADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVK---MRKEELQDEIMSGMYTEL-RE-LRLEKEKLVKRVGKII 163 (251)
Q Consensus 89 Sd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VK---lkKeelQ~EIms~ly~el-r~-lkkeke~L~~Ra~kI~ 163 (251)
..+++.+.+.+.-|-..++ ++|..+++...+.++ -+-.++-.+|+..|+.-. .- -|...-.|...-|.|+
T Consensus 33 ~~~a~~v~~~a~~L~~~l~-----~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lDdI~ 107 (227)
T 3l39_A 33 KQLSDVLSASSVLLVESME-----HDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVI 107 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 4455555555555544443 245566665555544 345567778888777511 00 1222334444445555
Q ss_pred HHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 040683 164 DEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSRE 243 (251)
Q Consensus 164 d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~E 243 (251)
|.+=.+=.... |.....--..+.+..+.+-+-...+-+-+.++.+. +++.-.+.=-+.++.-+|+||..+-.+..++
T Consensus 108 D~ie~~a~~l~-l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~--~~~~~~i~~~~~eI~~lE~eaD~l~~~~~~~ 184 (227)
T 3l39_A 108 DGINSSAKRIV-IYNPRPISESGKELSRLIHEEAINIGKAMDELETF--RKNPKPLRDYCTQLHDIENQADDVYELFITK 184 (227)
T ss_dssp HHHHHHHHHHH-HHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433333222 11111112233444555555666666667776653 2233334444778888899998887666655
Q ss_pred HH
Q 040683 244 MR 245 (251)
Q Consensus 244 mr 245 (251)
+=
T Consensus 185 Lf 186 (227)
T 3l39_A 185 LF 186 (227)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.23 E-value=2.2e+02 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=39.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHhhhhh
Q 040683 134 QDEIMSGMYTELRELRLEKEKLVKRV---GKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 134 Q~EIms~ly~elr~lkkeke~L~~Ra---~kI~d~~l~~krE~ekLlg~ 179 (251)
..|+|..||.-.+..+-..-.|.... +..+.++|.++-+.-.++.+
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~k 137 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 137 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 34899999999999999999999765 46999999999998887665
No 50
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=28.82 E-value=4.6e+02 Score=26.35 Aligned_cols=46 Identities=9% Similarity=0.155 Sum_probs=36.2
Q ss_pred HHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 040683 190 IGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSRE 243 (251)
Q Consensus 190 m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~E 243 (251)
...+++||+++...|.++++.+.-.+.+ ...|-.|..++.+.|-.+
T Consensus 404 ~~kl~~E~~eL~~~i~~l~~iL~~~~~l--------~~~i~~EL~~i~~kygd~ 449 (716)
T 1zvu_A 404 EMKIRGEQSELEKERDQLQGILASERKM--------NNLLKKELQADAQAYGDD 449 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHH--------HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999887765543 346778888888888643
No 51
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=28.32 E-value=2.2e+02 Score=23.76 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=8.4
Q ss_pred hHHHHHHHHhhHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELW 201 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiw 201 (251)
+..+-+.+..++.+|.+-|
T Consensus 95 l~~~l~~~~~L~~~~~~k~ 113 (192)
T 2p22_C 95 VQALLENARILESKYVASW 113 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444554444
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.29 E-value=1.6e+02 Score=20.94 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 040683 148 LRLEKEKLVKRVGKIIDEVLMVQT 171 (251)
Q Consensus 148 lkkeke~L~~Ra~kI~d~~l~~kr 171 (251)
++++...|..-.|...+.+-.++.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~ 27 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEA 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 53
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=28.29 E-value=16 Score=28.82 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=48.4
Q ss_pred hhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhc--hHHHHHHHHH
Q 040683 68 LDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMR--KEELQDEIMS 139 (251)
Q Consensus 68 w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlk--KeelQ~EIms 139 (251)
||+. .+--..|+++..-.|.|. |.+.|.+-.+|+.=..--+..|.+..+-.||+..++. .+.+|+.++.
T Consensus 23 wK~laR~LGlse~~Id~I~~d~~---~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~~~l~~~Ad~Iq~~l~~ 94 (115)
T 3ezq_A 23 VKGFVRKNGVNEAKIDEIKNDNV---QDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILK 94 (115)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCS---SCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhhHHHHHHcCC---CChHHHHHHHHHHHHHHhCcccHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 8887 555677777666666554 4455999999999888777777888888888876653 4555555443
No 54
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.13 E-value=64 Score=20.25 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 040683 140 GMYTELRELRLEKEKLVKR 158 (251)
Q Consensus 140 ~ly~elr~lkkeke~L~~R 158 (251)
.||.||.+|....++|.++
T Consensus 5 elykeledlqerlrklrkk 23 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777776666666553
No 55
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.49 E-value=1.4e+02 Score=20.08 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=13.3
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q 040683 185 ELLDMIGTMEREYDELWERV 204 (251)
Q Consensus 185 ~L~e~m~~~E~Eyneiweki 204 (251)
.||+||+.||..-+.|.+-+
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37888888887666655443
No 56
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.45 E-value=81 Score=21.57 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040683 115 DVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVK 157 (251)
Q Consensus 115 d~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~ 157 (251)
|..+|+.-|+.|- +=+..|+.+..+|+.+.+.|..
T Consensus 21 ~~~EVD~FLd~v~--------~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 21 DEDEVNEFLAQVR--------KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp EHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 6678888888774 3355677777788877776654
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.22 E-value=1.2e+02 Score=20.46 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRR 214 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRr 214 (251)
...+..|+.....++.+.+.+...|..+.+.+..-
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588999999999999999999998887766543
No 58
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.27 E-value=2.1e+02 Score=21.48 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHhhHHHHHHHH-------HHhhhhhhH
Q 040683 154 KLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGTMEREYDELW-------ERVGEIDDK 210 (251)
Q Consensus 154 ~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~~E~Eyneiw-------eki~EIeD~ 210 (251)
+|..|..+++.+ .+-|.+.|... +.|=.+|+++|..|+.|-+.+- .|..||+..
T Consensus 11 KLRrrl~E~~~q---~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 11 KLRWRMKEEMDR---AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433 45566665444 5565666666666666655554 445555544
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.16 E-value=2.6e+02 Score=22.70 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHhhhc----hHHHHHHH
Q 040683 100 SNLLKIVEEVRGGNGDVKRAKLALKAVKMR----KEELQDEI 137 (251)
Q Consensus 100 s~lLk~ieeVR~gngd~k~v~~ALk~VKlk----KeelQ~EI 137 (251)
-+|+.+--..-.=|--|..+...|+.-|.. -.+||+||
T Consensus 39 e~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI 80 (121)
T 3mq7_A 39 KGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEI 80 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666777777777766655 45566665
No 60
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.05 E-value=1e+02 Score=20.97 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhh
Q 040683 180 KVGAEELLDMIGTMEREYDELWERVGEIDDKMLR 213 (251)
Q Consensus 180 ~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilR 213 (251)
.+.+..|+..+..++.+.+.+...|..+.+.+..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999887766543
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.75 E-value=3.1e+02 Score=23.27 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhh
Q 040683 186 LLDMIGTMEREYDELWERVGEIDDKMLRRETV 217 (251)
Q Consensus 186 L~e~m~~~E~Eyneiweki~EIeD~ilRrET~ 217 (251)
...++..+|..||...|++-=+|.-+..++++
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~EKe~l 159 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELDEKESL 159 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999998777777767765
No 62
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.66 E-value=1.7e+02 Score=22.13 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHH
Q 040683 152 KEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREY 197 (251)
Q Consensus 152 ke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Ey 197 (251)
|+.|+.|.|+..-+--..+-|.+.+ ..-..+++.++..+|+|-
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~---~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAV---KQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777666655555565553 223445666666666553
No 63
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=25.18 E-value=2.6e+02 Score=22.25 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHhhhhh
Q 040683 134 QDEIMSGMYTELRELRLEKEKLVKRV---GKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 134 Q~EIms~ly~elr~lkkeke~L~~Ra---~kI~d~~l~~krE~ekLlg~ 179 (251)
..|+|..||.-.+..+-..-.|.... +..+.++|.++-+.-.++..
T Consensus 80 d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl~k 128 (140)
T 1o3x_A 80 SEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 46899999999999999999998664 46999999999988887654
No 64
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=23.65 E-value=1.5e+02 Score=20.98 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 040683 139 SGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE 179 (251)
Q Consensus 139 s~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~ 179 (251)
..|..++-+.|++.-.|..+-|=--..|+..-+|.|+|+-.
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~ 44 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINK 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34555666777777777777666777888999999988754
No 65
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.04 E-value=2e+02 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=13.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ 210 (251)
...|++++..++.+-..+-.++..+++.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444444444443
No 66
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=23.04 E-value=59 Score=25.52 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=51.5
Q ss_pred chhhhhhhhhhh---hhcc-ccccchhheecccCCcchhHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhhh
Q 040683 56 PAIAATVASEVK---LDNK-GREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRG-GNGDVKRAKLALKAVKM 128 (251)
Q Consensus 56 PAiA~pv~sdv~---w~kk-~~~~~~E~~~~~~dHEYSd~TrrLLetVs~lLk~ieeVR~-gngd~k~v~~ALk~VKl 128 (251)
||+---|+..|- ||+. .+--..|.++...+|.|... +-|.+-.+|+.=-.--+ +++.+..+-.||+...+
T Consensus 13 ~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~---l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l 87 (112)
T 1ich_A 13 PATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRC---LREAQYSMLATWRRRTPRREATLELLGRVLRDMDL 87 (112)
T ss_dssp CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSC---HHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC---hHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhcc
Confidence 555555555554 8888 55667888888888888543 45888899998887764 44579999999997655
No 67
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.93 E-value=1.8e+02 Score=21.21 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040683 184 EELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFS 241 (251)
Q Consensus 184 ~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~ 241 (251)
..|++|+..||..-+-.=.-|+++-|.+-+-. ++|.-.++.|..|.+|+.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq--------~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADAR--------LTGARNAELIRHLLEDLG 59 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777778777776654 456667788888877763
No 68
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.91 E-value=2.9e+02 Score=21.99 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 040683 183 AEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMR 245 (251)
Q Consensus 183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~Emr 245 (251)
++.-..++.....-|+.|-+|+.+|... ++-+|--.+-.+||+.+.-..+
T Consensus 36 AE~A~~~La~~~~l~~~i~er~~~i~~~-------------~~~~~yk~~y~~l~k~Y~~~~k 85 (119)
T 3etw_A 36 ADAARQALAQNEQVYNELSQRAQRLQAE-------------ANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------TTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hccchHHHHHHHHHHHHHHHHH
Confidence 4445677777888899999998888863 3677888888999888866544
No 69
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=22.03 E-value=80 Score=23.69 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=26.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKA 125 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gngd~k~v~~ALk~ 125 (251)
..++|||+. -+|..|+++...+++-++.+.+|..
T Consensus 5 ~~i~DyTe~------Efi~lv~~I~~~~~~~e~~d~ll~~ 38 (85)
T 1gxg_A 5 NSISDYTET------EFKKIIEDIINCEGDEKKQDDNLEH 38 (85)
T ss_dssp SSTTTSCHH------HHHHHHHHHHHTSSSSHHHHHHHHH
T ss_pred hhhhhcCHH------HHHHHHHHHHhCCCCchhHHHHHHH
Confidence 469999984 5677888888889888887666654
No 70
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=21.97 E-value=2.9e+02 Score=21.70 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=64.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHH
Q 040683 86 HEYADYTRRLLETVSNLLKIVEEVRGGN-GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLE----KEKLVKRVG 160 (251)
Q Consensus 86 HEYSd~TrrLLetVs~lLk~ieeVR~gn-gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkke----ke~L~~Ra~ 160 (251)
..|.++.+.++.+-..+-.+|.++-... ++...+....+.+..-..++...|......=|.+|... +..+.+|.+
T Consensus 61 ~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~ 140 (244)
T 1uru_A 61 NNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNR 140 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888887778888888864422 22222222223333333455555554444444444433 455667777
Q ss_pred HHHHHHHHhhHHHHhhhhh------hhhhHHHHHHHHhhHHHHHHHH
Q 040683 161 KIIDEVLMVQTEIESLKGE------KVGAEELLDMIGTMEREYDELW 201 (251)
Q Consensus 161 kI~d~~l~~krE~ekLlg~------~~~~~~L~e~m~~~E~Eyneiw 201 (251)
+.+|- =.++..+++|-.+ ...+...++.+.....+|+.+-
T Consensus 141 k~lDy-D~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln 186 (244)
T 1uru_A 141 KLIDY-DGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILN 186 (244)
T ss_dssp HHHHH-HHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhhH-HHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775 3445556665432 2235556666666666666554
No 71
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.88 E-value=2.6e+02 Score=21.07 Aligned_cols=55 Identities=31% Similarity=0.401 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhh-----------hhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683 153 EKLVKRVGKIIDEVLMVQTEIESLKGE-----------KVGAEELLDMIGTMEREYDELWERVGEI 207 (251)
Q Consensus 153 e~L~~Ra~kI~d~~l~~krE~ekLlg~-----------~~~~~~L~e~m~~~E~Eyneiweki~EI 207 (251)
++|..|...-+|.+--.+-|++.|..+ +.+-+.|+.....+..|.+...+||..+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444 1122335555555666666555555443
No 72
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=21.40 E-value=1.3e+02 Score=24.62 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 040683 94 RLLETVSNLLKIVEEVRGGNGDVKRAKLAL 123 (251)
Q Consensus 94 rLLetVs~lLk~ieeVR~gngd~k~v~~AL 123 (251)
+..+.++-+|.+.++.+.||.++..+...+
T Consensus 136 k~aD~l~a~lqa~e~~~~Gn~ef~~a~~~~ 165 (201)
T 2paq_A 136 KQADALCAYLKCLEELAAGNNEFLLAKTRL 165 (201)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 446889999999999999999876554443
No 73
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=21.34 E-value=1.4e+02 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHhhHHHHHHHHHHhhhhhhH
Q 040683 190 IGTMEREYDELWERVGEIDDK 210 (251)
Q Consensus 190 m~~~E~Eyneiweki~EIeD~ 210 (251)
.+.+.+-..++|.+|+.+|+.
T Consensus 60 ~~~L~e~~keLh~~I~~LEeE 80 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEE 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888764
No 74
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.76 E-value=1.2e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=27.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhh
Q 040683 171 TEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRE 215 (251)
Q Consensus 171 rE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrE 215 (251)
.|..+++..--|++.+.+..+.+.+..+++-.++.++++.+.+..
T Consensus 151 ~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 195 (203)
T 3qks_A 151 EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTE 195 (203)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444444555666666677777777777777777766543
No 75
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=20.51 E-value=57 Score=26.67 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHH
Q 040683 94 RLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRL 150 (251)
Q Consensus 94 rLLetVs~lLk~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkk 150 (251)
+-++.++-+|++.++...||.++.++-..+. +++..+. .++...++.++++.|+
T Consensus 129 K~aDkl~a~lqa~~~~~~g~~~~~~~~~~~~--~l~~~~~-t~~~~~l~~~i~~~r~ 182 (184)
T 1xx7_A 129 KIADKLDMIIQAYEYELSGAKNLSEFWNALE--DLEKLEI-SRYLREIIEEVRRLKD 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCGGGGGHHH--HHTTSGG-GGGCHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHhccC-CHHHHHHHHHHHHHhh
Confidence 4568889999999999999998776655443 4332221 3445566666665443
No 76
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.20 E-value=2.1e+02 Score=19.75 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 040683 144 ELRELRLEKEKLVKRVGKIIDEVLMVQTEIESL 176 (251)
Q Consensus 144 elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekL 176 (251)
.+++|+.....|..|-.++....=.++.|+.+|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888899999999999888887887777774
No 77
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=20.17 E-value=1.7e+02 Score=19.23 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Q 040683 143 TELRELRLEKEKLVKRV-GKIIDEVLMVQTEI 173 (251)
Q Consensus 143 ~elr~lkkeke~L~~Ra-~kI~d~~l~~krE~ 173 (251)
+|+..-++|..-|+++| ++|+.+.-+++.|+
T Consensus 2 aeieqakkeiaylikkakeeileeikkakqei 33 (35)
T 2o6n_A 2 AEIEQAKKEIAYLIKKAKEEILEEIKKAKQEI 33 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556677777777776 46788888887775
Done!