BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040684
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 161/269 (59%), Gaps = 49/269 (18%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKV-DGE---Q 85
+ LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL +GE Q
Sbjct: 15 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQ 74
Query: 86 MVDSSDIMDKL---------FQRI--------------------------HLDNASSQS- 109
+ DSS I+ L + I L+ +Q
Sbjct: 75 LNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQV 134
Query: 110 -------DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYA 162
EE KWR W D+ LVH++SPN+YRT +EAL SFDYI +G F E VAKY
Sbjct: 135 YSGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYM 194
Query: 163 GAAAMYFVSKKLKKRHNITDE-RVSLYEAAEIWVDALN-GRHYLGGSKPNLADLAVFGVL 220
GAAAMY +SK+LK RH + D R LYEAA+ WV A+ R ++GG KPNLADLAV+GVL
Sbjct: 195 GAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVL 254
Query: 221 RPIRHLKSGRDMVEHTRIGDWYTRMESSV 249
R + L + D+++HT I WY R+E ++
Sbjct: 255 RVMEGLDAFDDLMQHTHIQPWYLRVERAI 283
>pdb|1G7O|A Chain A, Nmr Solution Structure Of Reduced E. Coli Glutaredoxin 2
Length = 215
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 28/156 (17%)
Query: 32 LYQYEACPFCNKVKAFLDYYRIPYKV-VEVNPISKKEIKWSDYKKVPIL-KVDGEQMVDS 89
LY Y+ CP+C K + IP ++ V +N ++ + K+VPIL K D M +S
Sbjct: 3 LYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVGQKQVPILQKDDSRYMPES 62
Query: 90 SDI---MDKLFQRIHLDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYIT 146
DI +DKL + L S + EE W V+ + +L P ++ +FD +
Sbjct: 63 MDIVHYVDKLDGKPLLTGKRSPAIEE--WLRKVNGYANKLLLPRFAKS------AFDEFS 114
Query: 147 TQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITD 182
T AA YFV KK N D
Sbjct: 115 TP---------------AARKYFVDKKEASAGNFAD 135
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
Length = 116
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE------IKWSDYKKVPILKVDG 83
VV++ C +CN+VK L YKVVE++ +S W+ VP + + G
Sbjct: 22 VVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGG 81
Query: 84 EQMVDSSDIMDK 95
+Q+ +++K
Sbjct: 82 KQIGGCDTVVEK 93
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 117
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE------IKWSDYKKVPILKVDG 83
VV++ C +CN+VK L YKVVE++ +S W+ VP + + G
Sbjct: 23 VVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGG 82
Query: 84 EQMVDSSDIMDK 95
+Q+ +++K
Sbjct: 83 KQIGGCDTVVEK 94
>pdb|3IR4|A Chain A, 1.2 Angstrom Crystal Structure Of The Glutaredoxin 2
(Grxb) From Salmonella Typhimurium In Complex With
Glutathione
Length = 218
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 34/150 (22%)
Query: 32 LYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE----IKWSDYKKVPIL-KVDGEQM 86
LY Y+ CPFC K + IP VE+N + + + K VPIL K D +
Sbjct: 6 LYIYDHCPFCVKARXIFGLKNIP---VELNVLQNDDEATPTRXIGQKXVPILQKDDSRYL 62
Query: 87 VDSSDI---MDKLFQRIHLDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFD 143
+S DI +D L + L + + EE W V+ ++ +L P ++ +FD
Sbjct: 63 PESXDIVHYVDNLDGKPLLTGKRNPAIEE--WLRKVNGYVNQLLLPRFAKS------AFD 114
Query: 144 YITTQGNFSFTEKLVAKYAGAAAMYFVSKK 173
+T AA YF+ KK
Sbjct: 115 EFSTP---------------AARQYFIRKK 129
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS------KKEIKWSDYKKVPILKVDG 83
V+L+ CP+C KVK L +I + +E++ +S K +S + VP + V G
Sbjct: 20 VILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRG 79
Query: 84 EQMVDSSDIM 93
+ + DS ++
Sbjct: 80 KFIGDSQTVL 89
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS------KKEIKWSDYKKVPILKVDG 83
V+L+ CP+C KVK L +I + +E++ +S K +S + VP + V G
Sbjct: 20 VILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRG 79
Query: 84 EQMVDSSDIM 93
+ + DS ++
Sbjct: 80 KFIGDSQTVL 89
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS------KKEIKWSDYKKVPILKVDG 83
V+L+ CP+C KVK L +I + +E++ +S K +S + VP + V G
Sbjct: 20 VILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRG 79
Query: 84 EQMVDSSDIM 93
+ + DS ++
Sbjct: 80 KFIGDSQTVL 89
>pdb|4IBP|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound Glutathione
pdb|4ID0|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound Glutathione Sulfinic Acid (Gso2h)
And Acetate
pdb|4ID0|B Chain B, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound Glutathione Sulfinic Acid (Gso2h)
And Acetate
pdb|4IJI|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|B Chain B, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|C Chain C, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|D Chain D, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|E Chain E, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|F Chain F, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|G Chain G, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|H Chain H, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
Length = 214
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 30 VVLYQYEACPFCNKVKAFL----DYYRIPYKVVEVNPISKKEIKWSD--YKKVPILKVD- 82
+ L+ A P+ KV L R+ + +++P++ D K+P L++D
Sbjct: 3 LTLFHNPASPYVRKVXVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDN 62
Query: 83 GEQMVDSSDIMDKLFQRIHLDNASSQSDEEKKWR 116
G+ + DS I+D L Q+ H+ N D +WR
Sbjct: 63 GQVLYDSRVILDYLDQQ-HVGNPLIPRDGSARWR 95
>pdb|4HI7|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
pdb|4HI7|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
Length = 228
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE-----IKWSDYKKVPILKVDGEQ 85
+LY +A P VK L ++PY VN ++K++ +K + VP+L+
Sbjct: 5 ILYGIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLEDGDAN 64
Query: 86 MVDSSDIMDKLFQRIHLDNASSQSDEEKKWRAWVDNHL 123
+ DS IM L + D++ D K RA VDN +
Sbjct: 65 IADSHAIMAYLVSKYGKDDSLYPKDLVK--RALVDNRM 100
>pdb|4G10|A Chain A, Ligg From Sphingobium Sp. Syk-6 Is Related To The
Glutathione Transferase Omega Class
Length = 265
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKW-----SDYKKVPILKVD- 82
++ +Y CPF +V+ L+ + K VE++ ISK W +P+L V+
Sbjct: 6 ELTIYHIPGCPFSERVEIXLELKGLRXKDVEID-ISKPRPDWLLAKTGGTTALPLLDVEN 64
Query: 83 GEQMVDSSDIMDKLFQR 99
GE + +S I+ L QR
Sbjct: 65 GESLKESXVILRYLEQR 81
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEV--NPISKKE-IKWSDYKKVPILKVDGE 84
++V +Y E CP+C++ KA L + ++ + + N ++E IK S VP + +D +
Sbjct: 1 ANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQ 60
Query: 85 QMVDSSDI 92
+ D+
Sbjct: 61 HIGGYDDL 68
>pdb|2M46|A Chain A, Solution Nmr Structure Of Sacol0876 From Staphylococcus
Aureus Col, Nesg Target Zr353 And Csgid Target Idp00841
Length = 142
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEV 60
+ YQY+ C C K FLD Y + Y+ +++
Sbjct: 26 IKFYQYKNCTTCKKAAKFLDEYGVSYEPIDI 56
>pdb|1Z3E|A Chain A, Crystal Structure Of Spx In Complex With The C-Terminal
Domain Of The Rna Polymerase Alpha Subunit
Length = 132
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDS 89
V LY +C C K +A+L+ + IP+ VE N I + + + K++ + DG + S
Sbjct: 3 VTLYTSPSCTSCRKARAWLEEHEIPF--VERN-IFSEPLSIDEIKQILRMTEDGTDEIIS 59
Query: 90 SDIMDKLFQRIHLDNAS 106
+ K+FQ+++++ S
Sbjct: 60 T--RSKVFQKLNVNVES 74
>pdb|3GFK|A Chain A, Crystal Structure Of Bacillus Subtilis SpxRNA POLYMERASE
Alpha Subunit C-Terminal Domain Complex
Length = 131
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDS 89
V LY +C C K +A+L+ + IP+ VE N I + + + K++ + DG + S
Sbjct: 2 VTLYTSPSCTSCRKARAWLEEHEIPF--VERN-IFSEPLSIDEIKQILRMTEDGTDEIIS 58
Query: 90 SDIMDKLFQRIHLDNAS 106
+ K+FQ+++++ S
Sbjct: 59 TR--SKVFQKLNVNVES 73
>pdb|1FHE|A Chain A, Glutathione Transferase (Fh47) From Fasciola Hepatica
Length = 217
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 187 LYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRME 246
L + ++W D L RHYL GS + D ++ L IR+L + + E ++ ++ +R+E
Sbjct: 125 LPKTLKMWSDFLGDRHYLTGSSVSHVDFMLYETLDSIRYL-APHCLDEFPKLKEFKSRIE 183
Query: 247 S 247
+
Sbjct: 184 A 184
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 211 LADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGSS 252
L +L V G+ P+++ SG +EH + + +R +VG S
Sbjct: 55 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLS 96
>pdb|3G7J|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
pdb|3G7J|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
Length = 219
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 186 SLYEAAEIWVDALNGRHYL-GGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTR 244
S+ +A E L G Y+ GG P +ADL++ + + +G D+ + + WY R
Sbjct: 137 SMEQALEFLNTFLEGEQYVAGGDDPTIADLSILATI--ATYEVAGYDLRRYENVQRWYER 194
Query: 245 MESSV 249
+ V
Sbjct: 195 TSAIV 199
>pdb|3F6D|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
pdb|3F6D|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
Length = 219
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 186 SLYEAAEIWVDALNGRHYL-GGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTR 244
S+ +A E L G Y+ GG P +ADL++ + + +G D+ + + WY R
Sbjct: 137 SMEQALEFLNTFLEGEQYVAGGDDPTIADLSILATI--ATYEVAGYDLRRYENVQRWYER 194
Query: 245 MESSV 249
+ V
Sbjct: 195 TSAIV 199
>pdb|1JLW|A Chain A, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|1JLW|B Chain B, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|3F63|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3F63|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3G7I|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
pdb|3G7I|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
Length = 219
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 186 SLYEAAEIWVDALNGRHYL-GGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTR 244
S+ +A E L G Y+ GG P +ADL++ + + +G D+ + + WY R
Sbjct: 137 SMEQALEFLNTFLEGEQYVAGGDDPTIADLSILATI--ATYEVAGYDLRRYENVQRWYER 194
Query: 245 MESSV 249
+ V
Sbjct: 195 TSAIV 199
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 39 PFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWS---DYKKVPILKVDGEQMVDSSDIMDK 95
PF +V L IPY+ VE + +K + +KK+P+L G+ + +S+ I++
Sbjct: 14 PFSCRVIWALKLKGIPYEYVEEDLFNKSPLLLQYNPVHKKIPVLVHGGKPICESTIILEY 73
Query: 96 LFQRIHLDNASSQSDEEKK-----WRAWVDNHLVHVLSPNIYRTTSEALE 140
L +N SD ++ W ++++ + NI+RT E LE
Sbjct: 74 L-DETWPENPLLPSDPHERAVARFWVKFIEDKGTAIW--NIFRTKGEELE 120
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 16 PQAKEQPRSQK---FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSD 72
PQ E+ R+Q ++++ +EA + + L PY+ + + + + I +D
Sbjct: 596 PQIMEELRAQGIPVYANLTSGYFEAVEVAVAL-SVLKVIDNPYQDIPLASVLRSPIVGAD 654
Query: 73 YKKVPILKVDG------EQMVD---SSDIMDKLFQRIHLDNASSQSDEEKKWRAWVDNHL 123
++ +++++ E M D + D D+L+Q+++ Q KWRA+ NH
Sbjct: 655 ENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYGHLQ-----KWRAFSKNHS 709
Query: 124 VHVLSPNIYRTT 135
V L +YR T
Sbjct: 710 VSELIWEVYRDT 721
>pdb|1CD9|B Chain B, 2:2 Complex Of G-Csf With Its Receptor
pdb|1CD9|D Chain D, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|B Chain B, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|D Chain D, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|F Chain F, 2:2 Complex Of G-Csf With Its Receptor
pdb|1PGR|H Chain H, 2:2 Complex Of G-Csf With Its Receptor
Length = 215
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 152 SFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAEIWVDALNGRHYLGGSK-PN 210
SF + +Y G V+KK + +I + + LY+ IWV A N LG S+ P
Sbjct: 42 SFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAEN---MLGSSESPK 98
Query: 211 LA--DLAVFGVLRP-IRHLKSGRDMVEHTRIGDWYT 243
L + V + P ++ L G D+V H W +
Sbjct: 99 LCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLS 134
>pdb|2WRT|A Chain A, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|B Chain B, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|C Chain C, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|D Chain D, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|E Chain E, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|F Chain F, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|G Chain G, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|H Chain H, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|I Chain I, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|J Chain J, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|K Chain K, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
pdb|2WRT|L Chain L, The 2.4 Angstrom Structure Of The Fasciola Hepatica Mu
Class Gst, Gst26
Length = 218
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 192 EIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHL 226
++W + L RHYL GS + D V+ L IR+L
Sbjct: 131 KMWSNFLGDRHYLTGSSVSHVDFMVYEALDCIRYL 165
>pdb|1JLV|A Chain A, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|B Chain B, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|C Chain C, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|D Chain D, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|E Chain E, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|F Chain F, Anopheles Dirus Species B Glutathione S-transferases 1-3
Length = 209
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 166 AMYFVSKKLKKRHNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRH 225
A Y+ + K+ + + +A + L+G Y+ G +ADL V + +
Sbjct: 109 ADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHKYVAGDSLTIADLTVLATVS--TY 166
Query: 226 LKSGRDMVEHTRIGDWYTRMESSVGSSRIKE 256
+G ++ ++ + WY R + I E
Sbjct: 167 DVAGFELAKYPHVAAWYERTRKEAPGAAINE 197
>pdb|1R7H|A Chain A, Nrdh-Redoxin Of Corynebacterium Ammoniagenes Forms A
Domain- Swapped Dimer
pdb|1R7H|B Chain B, Nrdh-Redoxin Of Corynebacterium Ammoniagenes Forms A
Domain- Swapped Dimer
Length = 75
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEV--NPISKKEIKWSDYKKVPILKVDGEQ 85
+ LY AC C K LD + Y V++ + ++ + Y + P+++VDGE
Sbjct: 3 ITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVEVDGEH 60
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 29 DVVLYQYEACPFCNKVKAFL 48
DV++Y CP+C + KA L
Sbjct: 7 DVIIYTRPGCPYCARAKALL 26
>pdb|3UBK|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans
pdb|3UBK|B Chain B, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans
pdb|3UBL|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans With Gsh Bound
pdb|3UBL|B Chain B, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans With Gsh Bound
Length = 242
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 40 FCNKVKAFLDYYRIPYKVVEVNPISKKE-IKWSDYKKVPILKVDGEQMVDSSDIMDKL 96
+ NKVK + + Y+ + + P +++ +K S K+P+L++DG+ + +S I++ L
Sbjct: 14 YVNKVKLGILEKGLEYEQIRIAPSQEEDFLKISPMGKIPVLEMDGKFIFESGAILEFL 71
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEV------NPISKKEIKWSDYKKVPILKVDG 83
VV++ +C +C K + YKVVE+ N K + + VP + V+G
Sbjct: 51 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 110
Query: 84 EQMVDSSD 91
+ ++D
Sbjct: 111 TFIGGATD 118
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 142 FDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAEIWVDALNGR 201
+DY GN + T L K+ GA + K+ I+DE + EAA GR
Sbjct: 933 YDYPQENGNHTDTHFLNIKFEGAGKLSIFQKEKPFNFKISDE-YGVDEAAHACDVKRYGR 991
Query: 202 HYL 204
HYL
Sbjct: 992 HYL 994
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEV------NPISKKEIKWSDYKKVPILKVDG 83
VV++ +C +C K + YKVVE+ N K + + VP + V+G
Sbjct: 29 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 88
Query: 84 EQMVDSSD 91
+ ++D
Sbjct: 89 TFIGGATD 96
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 22 PRSQKFSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEI 68
P S K +++LY CP+C + + LD + Y ++ + ++E+
Sbjct: 2 PGSMK--EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEM 46
>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
Length = 246
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 68/235 (28%)
Query: 32 LYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYK----KVPILKVDGEQ-- 85
LY + P+ ++V L+ RI Y+V ++P+ E W K K+P+L++ +Q
Sbjct: 29 LYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPE--WFRAKNPRLKIPVLEIPTDQGD 86
Query: 86 --MVDSSDIMDKLFQRIHLDNASSQSDEEKKWRAWVDNHLVHV------LSPNIYRTTSE 137
+ +S I D L +EK R + +H +V L
Sbjct: 87 RFLFESVVICDYL--------------DEKYTRHTLHSHDPYVKAQDRLLIERFNELIKG 132
Query: 138 ALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAEIWVDA 197
+LE FD NF+F + + + + K+L R
Sbjct: 133 SLECFD-----TNFAFGSEQIIQ-----TLEIFEKELTNR-------------------- 162
Query: 198 LNGRHYLGGSKPNLADLAVFGVLRPIRHLK--SGRDMVEHTRI----GDWYTRME 246
G +Y GG++P + D V+ + + L+ + R VE + DW +M+
Sbjct: 163 --GTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWGDQMQ 215
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEV------NPISKKEIKWSDYKKVPILKVDG 83
VV++ +C +C K + YKVVE+ N K + + VP + V+G
Sbjct: 37 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNG 96
Query: 84 EQMVDSSD 91
+ ++D
Sbjct: 97 TFIGGATD 104
>pdb|2HRK|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
pdb|2HSM|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 207
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 174 LKKRHNITDERVSLYEAAEIWVDALNGRHY-LGGSKPNLADLAVFGVLRPIRHLKSGRDM 232
L ++ + L ++ E LN R + LGG K + AD+A +G LR S
Sbjct: 97 LAQKELVIKNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNGMCGSIIKN 156
Query: 233 VEHTRIGDWYTRME 246
+ WYT +E
Sbjct: 157 KVDVNVSRWYTLLE 170
>pdb|3NIV|A Chain A, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|B Chain B, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|C Chain C, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|D Chain D, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
Length = 222
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPI-------SKKEIKWSDYKKVPILKVD 82
++LY Y C +V+ L+ +I Y+ +EV+ + S + + + + VP L ++
Sbjct: 3 LILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDIN 62
Query: 83 GEQMVDSSDIMDKLFQRIH 101
G+ + S I+D L + IH
Sbjct: 63 GQILSQSXAIIDYL-EEIH 80
>pdb|3IC4|A Chain A, The Crystal Structure Of The Glutaredoxin(Grx-1) From
Archaeoglobus Fulgidus
Length = 92
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 18 AKEQPRSQKFSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIK 69
+E Q ++V+ Y CP C + FL + ++V+ ++ + +E K
Sbjct: 2 GRENLYFQGXAEVLXYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERK 53
>pdb|3IHQ|A Chain A, Crystal Structure Of Reduced C10s Spx In Complex With The
Alpha C-Terminal Domain Of Rna Polymeras
Length = 132
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDS 89
V LY + C K +A+L+ + IP+ VE N I + + + K++ + DG + S
Sbjct: 3 VTLYTSPSSTSCRKARAWLEEHEIPF--VERN-IFSEPLSIDEIKQILRMTEDGTDEIIS 59
Query: 90 SDIMDKLFQRIHLDNAS 106
+ K+FQ+++++ S
Sbjct: 60 T--RSKVFQKLNVNVES 74
>pdb|2HRA|A Chain A, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HRA|B Chain B, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
Length = 209
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 187 LYEAAEIWVDALNGRHY-LGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRM 245
L ++ E LN R + LGG K + AD+A +G LR S + WYT +
Sbjct: 112 LSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNGMCGSIIKNKVDVNVSRWYTLL 171
Query: 246 E 246
E
Sbjct: 172 E 172
>pdb|1WJK|A Chain A, Solution Structure Of Hypothetical Protein C330018d20rik
From Mus Musculus
Length = 100
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKK--VPILKVDGEQMV 87
+ L+ CP C++ K L Y+ + + EV+ + W + K +P+ ++G+ ++
Sbjct: 19 LTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFDIPVFHLNGQFLM 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,648,608
Number of Sequences: 62578
Number of extensions: 305623
Number of successful extensions: 918
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 50
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)