Query 040684
Match_columns 256
No_of_seqs 130 out of 1184
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 10:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3029 Glutathione S-transfer 100.0 5.5E-33 1.2E-37 216.4 19.8 223 29-251 90-358 (370)
2 PRK09481 sspA stringent starva 100.0 6.9E-31 1.5E-35 208.4 18.7 181 29-251 10-196 (211)
3 PRK10387 glutaredoxin 2; Provi 100.0 2.3E-29 5E-34 199.7 19.4 200 30-251 1-207 (210)
4 KOG0406 Glutathione S-transfer 100.0 1.3E-28 2.7E-33 191.3 17.3 187 28-251 8-205 (231)
5 PLN02473 glutathione S-transfe 100.0 6.4E-29 1.4E-33 197.7 15.0 192 29-251 2-205 (214)
6 KOG0868 Glutathione S-transfer 100.0 3.5E-28 7.6E-33 177.6 13.7 190 28-251 4-201 (217)
7 PRK15113 glutathione S-transfe 100.0 9.6E-28 2.1E-32 190.8 17.3 184 28-251 4-202 (214)
8 COG0625 Gst Glutathione S-tran 100.0 1.7E-27 3.7E-32 189.0 17.6 185 30-250 1-197 (211)
9 TIGR02182 GRXB Glutaredoxin, G 100.0 5.8E-27 1.3E-31 185.4 19.3 195 31-251 1-206 (209)
10 PRK10542 glutathionine S-trans 100.0 3.2E-27 6.9E-32 186.2 16.4 179 30-251 1-191 (201)
11 PRK13972 GSH-dependent disulfi 99.9 3.9E-27 8.5E-32 187.5 14.7 182 30-251 2-199 (215)
12 PRK10357 putative glutathione 99.9 6.6E-27 1.4E-31 184.5 15.6 188 30-253 1-196 (202)
13 PLN02395 glutathione S-transfe 99.9 1.2E-26 2.6E-31 184.7 17.2 190 30-251 3-204 (215)
14 TIGR01262 maiA maleylacetoacet 99.9 1.2E-26 2.7E-31 184.0 16.7 184 31-251 1-198 (210)
15 PLN02378 glutathione S-transfe 99.9 1.8E-26 3.9E-31 183.2 16.0 170 34-251 16-193 (213)
16 PTZ00057 glutathione s-transfe 99.9 6.3E-26 1.4E-30 179.2 18.0 180 29-251 4-193 (205)
17 TIGR00862 O-ClC intracellular 99.9 7.9E-26 1.7E-30 180.1 16.3 171 35-250 16-213 (236)
18 PRK11752 putative S-transferas 99.9 3.2E-25 7E-30 181.2 17.8 185 29-251 44-252 (264)
19 PLN02817 glutathione dehydroge 99.9 7.7E-25 1.7E-29 178.1 16.8 169 35-251 70-245 (265)
20 KOG0867 Glutathione S-transfer 99.9 2.4E-24 5.2E-29 171.8 15.0 187 29-251 2-203 (226)
21 KOG1695 Glutathione S-transfer 99.9 7.2E-24 1.6E-28 163.8 15.3 188 27-251 1-194 (206)
22 KOG4420 Uncharacterized conser 99.9 1.8E-22 3.9E-27 156.2 14.6 219 29-250 26-280 (325)
23 KOG4244 Failed axon connection 99.9 8.4E-22 1.8E-26 153.5 17.5 224 17-249 31-274 (281)
24 cd03197 GST_C_mPGES2 GST_C fam 99.9 6.5E-22 1.4E-26 144.3 13.6 142 109-250 5-148 (149)
25 COG2999 GrxB Glutaredoxin 2 [P 99.8 1.7E-19 3.6E-24 132.1 13.5 197 30-251 1-207 (215)
26 PLN02907 glutamate-tRNA ligase 99.8 5.7E-19 1.2E-23 160.4 17.0 156 27-250 1-159 (722)
27 KOG1422 Intracellular Cl- chan 99.8 4.5E-18 9.8E-23 128.3 14.4 168 36-248 19-196 (221)
28 PF13417 GST_N_3: Glutathione 99.8 2.3E-18 5E-23 113.6 7.1 72 32-103 1-74 (75)
29 cd03040 GST_N_mPGES2 GST_N fam 99.7 2.1E-17 4.6E-22 109.7 8.8 73 29-101 1-77 (77)
30 cd03041 GST_N_2GST_N GST_N fam 99.7 8.9E-17 1.9E-21 106.6 8.9 71 30-100 2-77 (77)
31 cd03052 GST_N_GDAP1 GST_N fami 99.7 5.1E-17 1.1E-21 106.4 7.3 68 30-97 1-73 (73)
32 cd03059 GST_N_SspA GST_N famil 99.7 8.5E-17 1.8E-21 105.6 8.3 71 30-100 1-73 (73)
33 cd03061 GST_N_CLIC GST_N famil 99.7 9.2E-17 2E-21 108.3 8.1 68 36-103 20-89 (91)
34 cd03058 GST_N_Tau GST_N family 99.7 1.3E-16 2.9E-21 105.0 8.2 71 30-100 1-74 (74)
35 cd03037 GST_N_GRX2 GST_N famil 99.7 1.3E-16 2.8E-21 104.2 7.6 69 30-98 1-71 (71)
36 cd03045 GST_N_Delta_Epsilon GS 99.7 1.8E-16 3.8E-21 104.4 7.8 69 30-98 1-74 (74)
37 cd03055 GST_N_Omega GST_N fami 99.7 5.7E-16 1.2E-20 105.6 8.8 80 18-97 6-89 (89)
38 cd03050 GST_N_Theta GST_N fami 99.7 5.1E-16 1.1E-20 102.7 8.1 71 30-100 1-76 (76)
39 cd03053 GST_N_Phi GST_N family 99.7 5.4E-16 1.2E-20 102.6 8.1 70 30-99 2-76 (76)
40 cd03080 GST_N_Metaxin_like GST 99.7 5.3E-16 1.2E-20 102.3 8.1 67 30-101 2-75 (75)
41 cd03060 GST_N_Omega_like GST_N 99.7 4.4E-16 9.6E-21 101.6 7.6 66 31-96 2-70 (71)
42 cd03076 GST_N_Pi GST_N family, 99.7 5E-16 1.1E-20 101.8 7.4 70 30-99 2-73 (73)
43 cd03039 GST_N_Sigma_like GST_N 99.6 5.4E-16 1.2E-20 101.5 7.1 69 30-98 1-72 (72)
44 cd03056 GST_N_4 GST_N family, 99.6 8.7E-16 1.9E-20 100.7 7.6 68 30-97 1-73 (73)
45 COG0435 ECM4 Predicted glutath 99.6 5.4E-15 1.2E-19 116.1 12.7 187 26-251 48-280 (324)
46 cd03048 GST_N_Ure2p_like GST_N 99.6 1.7E-15 3.7E-20 101.5 8.6 71 30-101 2-80 (81)
47 cd03051 GST_N_GTT2_like GST_N 99.6 1.5E-15 3.3E-20 99.8 6.6 68 30-97 1-74 (74)
48 cd03044 GST_N_EF1Bgamma GST_N 99.6 3.1E-15 6.6E-20 98.7 7.8 68 31-98 2-74 (75)
49 cd03077 GST_N_Alpha GST_N fami 99.6 5.1E-15 1.1E-19 98.5 8.8 73 29-101 1-77 (79)
50 cd03047 GST_N_2 GST_N family, 99.6 3.8E-15 8.2E-20 97.7 7.9 68 30-97 1-73 (73)
51 cd03057 GST_N_Beta GST_N famil 99.6 4.3E-15 9.3E-20 98.5 8.2 71 30-101 1-77 (77)
52 cd03046 GST_N_GTT1_like GST_N 99.6 5.8E-15 1.2E-19 97.6 8.5 71 30-101 1-76 (76)
53 cd03042 GST_N_Zeta GST_N famil 99.6 3.7E-15 8.1E-20 97.7 7.5 68 30-97 1-73 (73)
54 cd03075 GST_N_Mu GST_N family, 99.6 5E-15 1.1E-19 99.2 8.2 70 31-100 2-82 (82)
55 cd03038 GST_N_etherase_LigE GS 99.6 4.8E-15 1E-19 100.0 7.4 66 36-101 14-84 (84)
56 cd03049 GST_N_3 GST_N family, 99.6 4E-15 8.8E-20 97.6 6.5 68 30-97 1-73 (73)
57 KOG2903 Predicted glutathione 99.6 1.4E-14 3.1E-19 112.6 8.3 202 3-247 13-277 (319)
58 PF02798 GST_N: Glutathione S- 99.6 3E-14 6.5E-19 94.0 8.7 69 30-98 1-76 (76)
59 cd03054 GST_N_Metaxin GST_N fa 99.6 1.7E-14 3.7E-19 94.3 7.4 65 30-99 1-72 (72)
60 PF13409 GST_N_2: Glutathione 99.5 1.2E-14 2.6E-19 94.3 5.4 63 37-99 1-70 (70)
61 cd00570 GST_N_family Glutathio 99.5 7.4E-14 1.6E-18 90.4 7.2 68 30-97 1-71 (71)
62 cd03043 GST_N_1 GST_N family, 99.5 2.7E-13 5.9E-18 88.7 7.6 65 33-97 5-73 (73)
63 KOG3027 Mitochondrial outer me 99.4 2.9E-11 6.2E-16 91.3 16.5 204 38-249 34-249 (257)
64 PF00043 GST_C: Glutathione S- 99.3 1.9E-12 4.2E-17 89.2 5.6 69 181-249 27-95 (95)
65 cd03079 GST_N_Metaxin2 GST_N f 99.3 6.7E-12 1.5E-16 81.3 7.1 60 36-99 15-74 (74)
66 cd03196 GST_C_5 GST_C family, 99.3 1.7E-11 3.6E-16 87.7 7.9 71 181-251 40-111 (115)
67 TIGR02190 GlrX-dom Glutaredoxi 99.3 4.9E-11 1.1E-15 79.2 8.8 73 25-97 5-79 (79)
68 PF13410 GST_C_2: Glutathione 99.3 1.2E-11 2.5E-16 80.1 5.6 64 181-244 5-69 (69)
69 cd03188 GST_C_Beta GST_C famil 99.3 1.7E-11 3.6E-16 87.4 7.0 68 182-251 43-110 (114)
70 KOG3028 Translocase of outer m 99.2 1.8E-09 3.8E-14 87.1 18.5 201 38-251 17-237 (313)
71 cd03202 GST_C_etherase_LigE GS 99.2 2.1E-10 4.6E-15 83.1 11.7 68 181-248 57-124 (124)
72 cd03177 GST_C_Delta_Epsilon GS 99.2 1.4E-10 2.9E-15 83.3 10.1 71 180-251 36-106 (118)
73 cd03190 GST_C_ECM4_like GST_C 99.2 1.1E-10 2.5E-15 86.6 9.2 70 182-251 37-112 (142)
74 cd03186 GST_C_SspA GST_N famil 99.2 1.1E-10 2.4E-15 82.3 8.7 69 182-251 35-103 (107)
75 PRK10638 glutaredoxin 3; Provi 99.2 2.1E-10 4.5E-15 77.0 9.0 71 27-97 1-74 (83)
76 cd03204 GST_C_GDAP1 GST_C fami 99.2 6.5E-11 1.4E-15 83.3 6.4 70 181-250 28-110 (111)
77 cd03180 GST_C_2 GST_C family, 99.2 7.1E-11 1.5E-15 83.6 6.7 67 182-250 43-109 (110)
78 cd03078 GST_N_Metaxin1_like GS 99.2 1.4E-10 3.1E-15 75.5 7.3 58 37-99 15-72 (73)
79 cd03187 GST_C_Phi GST_C family 99.2 5.9E-11 1.3E-15 85.1 5.9 70 182-251 45-114 (118)
80 cd03189 GST_C_GTT1_like GST_C 99.2 9.6E-11 2.1E-15 84.2 6.7 66 182-249 54-119 (119)
81 cd03206 GST_C_7 GST_C family, 99.2 1.4E-10 3.1E-15 80.7 7.3 68 181-250 32-99 (100)
82 cd03198 GST_C_CLIC GST_C famil 99.1 1E-10 2.2E-15 84.9 6.1 71 181-251 28-118 (134)
83 PF14497 GST_C_3: Glutathione 99.1 6.6E-11 1.4E-15 82.2 4.9 63 181-247 34-99 (99)
84 cd03185 GST_C_Tau GST_C family 99.1 3.6E-10 7.7E-15 82.0 8.4 70 182-251 35-109 (126)
85 cd03184 GST_C_Omega GST_C fami 99.1 1.3E-10 2.8E-15 84.2 5.4 72 180-251 30-107 (124)
86 cd03207 GST_C_8 GST_C family, 99.1 2E-10 4.3E-15 80.4 6.2 67 182-251 30-96 (103)
87 cd03200 GST_C_JTV1 GST_C famil 99.1 1.2E-09 2.7E-14 75.3 9.6 59 185-248 38-96 (96)
88 cd03193 GST_C_Metaxin GST_C fa 99.1 2.4E-10 5.2E-15 77.6 6.0 65 182-246 19-88 (88)
89 cd03209 GST_C_Mu GST_C family, 99.1 4.4E-10 9.5E-15 81.1 6.8 68 183-251 36-103 (121)
90 cd03182 GST_C_GTT2_like GST_C 99.1 4.1E-10 8.9E-15 80.6 6.5 68 181-250 48-116 (117)
91 cd03029 GRX_hybridPRX5 Glutare 99.1 1.3E-09 2.8E-14 71.1 8.2 69 29-97 2-72 (72)
92 cd03201 GST_C_DHAR GST_C famil 99.0 4.7E-10 1E-14 80.8 5.8 70 182-251 30-104 (121)
93 cd03178 GST_C_Ure2p_like GST_C 99.0 5.3E-10 1.1E-14 79.5 5.0 69 182-251 40-108 (113)
94 cd03183 GST_C_Theta GST_C fami 99.0 1.4E-09 3E-14 79.0 7.2 69 182-251 45-116 (126)
95 cd03210 GST_C_Pi GST_C family, 99.0 7.7E-10 1.7E-14 80.4 5.8 68 183-251 36-106 (126)
96 cd03191 GST_C_Zeta GST_C famil 99.0 9.6E-10 2.1E-14 79.2 6.3 66 184-251 46-113 (121)
97 cd03211 GST_C_Metaxin2 GST_C f 99.0 8.2E-10 1.8E-14 80.1 4.9 66 181-246 56-126 (126)
98 cd03208 GST_C_Alpha GST_C fami 99.0 1.2E-09 2.5E-14 80.6 5.8 66 185-251 42-109 (137)
99 cd03179 GST_C_1 GST_C family, 98.9 2.6E-09 5.6E-14 74.8 6.2 63 182-246 43-105 (105)
100 cd03181 GST_C_EFB1gamma GST_C 98.9 2.5E-09 5.4E-14 77.2 5.8 70 182-251 40-110 (123)
101 cd03194 GST_C_3 GST_C family, 98.9 5.1E-09 1.1E-13 74.6 6.4 63 184-251 46-108 (114)
102 cd03212 GST_C_Metaxin1_3 GST_C 98.9 5.2E-09 1.1E-13 76.9 6.4 67 182-248 64-135 (137)
103 cd03027 GRX_DEP Glutaredoxin ( 98.9 2.1E-08 4.6E-13 65.4 8.3 66 29-94 2-70 (73)
104 cd00299 GST_C_family Glutathio 98.9 6E-09 1.3E-13 72.0 5.9 64 182-245 36-100 (100)
105 cd03203 GST_C_Lambda GST_C fam 98.9 5.3E-09 1.1E-13 75.3 5.7 65 186-251 34-105 (120)
106 PRK10329 glutaredoxin-like pro 98.8 3.3E-08 7.1E-13 65.7 7.9 59 29-87 2-62 (81)
107 cd03192 GST_C_Sigma_like GST_C 98.8 6.7E-09 1.4E-13 72.7 3.9 63 182-245 39-104 (104)
108 cd03418 GRX_GRXb_1_3_like Glut 98.8 9E-08 1.9E-12 62.7 8.7 69 29-97 1-73 (75)
109 cd02066 GRX_family Glutaredoxi 98.8 7.6E-08 1.6E-12 62.1 8.2 67 29-95 1-70 (72)
110 cd03195 GST_C_4 GST_C family, 98.8 2.4E-08 5.2E-13 71.2 6.3 65 182-251 42-107 (114)
111 PRK11200 grxA glutaredoxin 1; 98.7 1.3E-07 2.9E-12 63.6 9.2 73 29-101 2-84 (85)
112 COG0695 GrxC Glutaredoxin and 98.7 1.5E-07 3.2E-12 62.4 8.8 69 29-97 2-75 (80)
113 TIGR02183 GRXA Glutaredoxin, G 98.7 2E-07 4.3E-12 62.8 9.0 72 30-101 2-83 (86)
114 TIGR02196 GlrX_YruB Glutaredox 98.7 1.9E-07 4.1E-12 60.6 8.3 67 30-96 2-73 (74)
115 cd03199 GST_C_GRX2 GST_C famil 98.6 9.3E-07 2E-11 63.2 10.9 116 110-250 2-124 (128)
116 TIGR02181 GRX_bact Glutaredoxi 98.6 3.4E-07 7.3E-12 60.6 8.1 69 30-98 1-72 (79)
117 TIGR02194 GlrX_NrdH Glutaredox 98.6 3E-07 6.6E-12 59.7 7.0 55 30-84 1-57 (72)
118 cd02976 NrdH NrdH-redoxin (Nrd 98.6 4.3E-07 9.4E-12 58.8 7.8 61 29-89 1-64 (73)
119 cd03205 GST_C_6 GST_C family, 98.6 9.6E-08 2.1E-12 66.1 4.9 62 181-245 36-98 (98)
120 TIGR02189 GlrX-like_plant Glut 98.6 5.7E-07 1.2E-11 62.2 8.5 69 28-96 8-82 (99)
121 PF04399 Glutaredoxin2_C: Glut 98.6 2.1E-07 4.5E-12 67.2 6.3 117 110-251 1-124 (132)
122 PF00462 Glutaredoxin: Glutare 98.6 2.9E-07 6.2E-12 57.5 6.3 57 30-86 1-60 (60)
123 PHA03050 glutaredoxin; Provisi 98.5 1.2E-06 2.5E-11 61.6 8.3 67 28-94 13-88 (108)
124 cd03419 GRX_GRXh_1_2_like Glut 98.5 1.2E-06 2.6E-11 58.3 8.0 71 29-99 1-77 (82)
125 TIGR00365 monothiol glutaredox 98.5 1.5E-06 3.2E-11 59.9 8.4 70 28-97 12-89 (97)
126 TIGR02200 GlrX_actino Glutared 98.5 1.4E-06 3.1E-11 57.1 8.1 68 29-96 1-75 (77)
127 cd03028 GRX_PICOT_like Glutare 98.3 6.6E-06 1.4E-10 55.9 8.8 69 29-97 9-85 (90)
128 TIGR02180 GRX_euk Glutaredoxin 98.2 1.1E-05 2.3E-10 53.8 7.8 69 30-98 1-77 (84)
129 PF10568 Tom37: Outer mitochon 98.0 2.4E-05 5.2E-10 50.5 6.2 55 37-96 13-71 (72)
130 PRK10824 glutaredoxin-4; Provi 98.0 7.5E-05 1.6E-09 52.8 8.6 69 29-97 16-92 (115)
131 cd03031 GRX_GRX_like Glutaredo 97.9 0.00013 2.8E-09 54.0 8.8 69 29-97 1-82 (147)
132 PRK12759 bifunctional gluaredo 97.9 6.8E-05 1.5E-09 65.3 8.6 68 27-94 1-79 (410)
133 KOG1752 Glutaredoxin and relat 97.8 0.00023 4.9E-09 49.3 8.1 70 28-97 14-89 (104)
134 PTZ00062 glutaredoxin; Provisi 97.6 0.00067 1.5E-08 53.1 8.8 69 28-96 113-189 (204)
135 cd02973 TRX_GRX_like Thioredox 97.3 0.0014 3.1E-08 41.4 6.7 57 29-87 2-64 (67)
136 COG4545 Glutaredoxin-related p 97.2 0.0021 4.5E-08 40.8 5.9 61 27-87 1-77 (85)
137 PF14834 GST_C_4: Glutathione 97.0 0.0038 8.1E-08 43.5 6.3 65 182-251 43-108 (117)
138 cd03036 ArsC_like Arsenate Red 96.9 0.0011 2.5E-08 46.7 3.8 32 30-61 1-32 (111)
139 cd02977 ArsC_family Arsenate R 96.9 0.0014 3.1E-08 45.7 3.9 32 30-61 1-32 (105)
140 PRK01655 spxA transcriptional 96.9 0.0017 3.7E-08 47.3 4.3 32 30-61 2-33 (131)
141 cd03032 ArsC_Spx Arsenate Redu 96.7 0.0027 5.8E-08 45.1 4.4 32 30-61 2-33 (115)
142 PRK10026 arsenate reductase; P 96.6 0.0038 8.2E-08 45.8 4.3 34 27-60 1-34 (141)
143 TIGR01617 arsC_related transcr 96.5 0.004 8.6E-08 44.4 3.9 32 30-61 1-32 (117)
144 TIGR00412 redox_disulf_2 small 96.4 0.029 6.2E-07 36.5 7.5 56 29-87 2-61 (76)
145 PF05768 DUF836: Glutaredoxin- 96.4 0.023 4.9E-07 37.6 7.1 55 29-83 1-57 (81)
146 PRK13344 spxA transcriptional 96.4 0.0056 1.2E-07 44.6 4.4 32 30-61 2-33 (132)
147 PRK12559 transcriptional regul 96.4 0.0058 1.3E-07 44.5 4.4 32 30-61 2-33 (131)
148 COG0278 Glutaredoxin-related p 96.4 0.018 3.8E-07 39.0 6.2 68 30-97 17-93 (105)
149 cd03033 ArsC_15kD Arsenate Red 96.4 0.0058 1.3E-07 43.2 4.1 33 29-61 1-33 (113)
150 cd03035 ArsC_Yffb Arsenate Red 96.2 0.0067 1.5E-07 42.3 3.9 32 30-61 1-32 (105)
151 cd03030 GRX_SH3BGR Glutaredoxi 95.9 0.095 2.1E-06 35.5 8.1 66 30-95 2-80 (92)
152 PRK10853 putative reductase; P 95.4 0.025 5.4E-07 40.3 4.0 32 30-61 2-33 (118)
153 TIGR01616 nitro_assoc nitrogen 95.3 0.03 6.5E-07 40.4 4.3 33 29-61 2-34 (126)
154 TIGR00411 redox_disulf_1 small 95.2 0.11 2.4E-06 33.9 6.6 56 29-84 2-62 (82)
155 COG1393 ArsC Arsenate reductas 95.2 0.034 7.3E-07 39.5 4.2 33 29-61 2-34 (117)
156 PF13192 Thioredoxin_3: Thiore 95.2 0.26 5.7E-06 31.9 8.2 58 29-89 2-63 (76)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 95.1 0.13 2.8E-06 34.6 6.6 58 29-87 15-77 (89)
158 TIGR00014 arsC arsenate reduct 94.8 0.046 9.9E-07 38.7 3.9 32 30-61 1-32 (114)
159 cd03034 ArsC_ArsC Arsenate Red 94.8 0.046 9.9E-07 38.6 3.9 32 30-61 1-32 (112)
160 cd01659 TRX_superfamily Thiore 94.1 0.2 4.3E-06 30.0 5.4 52 30-81 1-59 (69)
161 KOG1147 Glutamyl-tRNA syntheta 93.9 0.056 1.2E-06 47.7 3.2 58 186-243 92-150 (712)
162 KOG0911 Glutaredoxin-related p 92.9 0.39 8.4E-06 37.8 6.1 71 28-98 139-217 (227)
163 PHA02125 thioredoxin-like prot 92.8 0.38 8.3E-06 31.0 5.2 50 30-81 2-52 (75)
164 PF11287 DUF3088: Protein of u 92.7 0.61 1.3E-05 32.5 6.2 67 37-103 23-110 (112)
165 PF11801 Tom37_C: Tom37 C-term 89.8 0.53 1.1E-05 35.8 4.0 38 188-225 114-155 (168)
166 PF03960 ArsC: ArsC family; I 88.4 0.59 1.3E-05 32.7 3.2 29 33-61 1-29 (110)
167 PF04908 SH3BGR: SH3-binding, 87.3 5.4 0.00012 27.4 7.3 66 30-95 3-86 (99)
168 COG3019 Predicted metal-bindin 84.8 9.8 0.00021 27.8 7.7 76 25-100 23-104 (149)
169 TIGR03143 AhpF_homolog putativ 80.2 7.2 0.00016 35.7 7.3 57 29-87 479-541 (555)
170 cd02949 TRX_NTR TRX domain, no 79.8 13 0.00028 24.9 6.8 57 30-86 17-80 (97)
171 PF09635 MetRS-N: MetRS-N bind 79.6 1.2 2.7E-05 31.5 1.6 30 73-102 33-64 (122)
172 cd02947 TRX_family TRX family; 78.7 14 0.00031 23.6 7.2 54 30-84 14-74 (93)
173 KOG1668 Elongation factor 1 be 76.9 2.8 6E-05 33.3 3.0 56 188-249 10-65 (231)
174 PF00085 Thioredoxin: Thioredo 76.8 19 0.00041 23.9 7.9 67 30-98 21-102 (103)
175 TIGR01295 PedC_BrcD bacterioci 75.6 15 0.00033 26.1 6.4 56 30-85 27-102 (122)
176 KOG2824 Glutaredoxin-related p 74.3 9.6 0.00021 31.2 5.5 69 29-97 132-213 (281)
177 TIGR03140 AhpF alkyl hydropero 71.4 4.7 0.0001 36.6 3.6 58 29-88 120-183 (515)
178 cd02989 Phd_like_TxnDC9 Phosdu 71.4 32 0.00069 24.0 7.3 57 30-88 26-90 (113)
179 TIGR02187 GlrX_arch Glutaredox 68.5 23 0.00049 27.9 6.6 50 30-81 137-192 (215)
180 PRK15317 alkyl hydroperoxide r 67.9 6.5 0.00014 35.6 3.7 69 29-99 119-197 (517)
181 cd02975 PfPDO_like_N Pyrococcu 67.2 18 0.00039 25.3 5.1 50 30-81 25-81 (113)
182 cd02963 TRX_DnaJ TRX domain, D 62.0 50 0.0011 22.8 7.4 58 28-85 26-91 (111)
183 PTZ00051 thioredoxin; Provisio 58.8 50 0.0011 21.8 6.8 55 30-86 22-84 (98)
184 cd02984 TRX_PICOT TRX domain, 58.4 50 0.0011 21.7 6.7 57 30-86 18-81 (97)
185 TIGR02187 GlrX_arch Glutaredox 52.6 65 0.0014 25.3 6.6 55 30-84 23-88 (215)
186 cd02959 ERp19 Endoplasmic reti 51.3 30 0.00066 24.3 4.1 59 29-87 22-91 (117)
187 cd02953 DsbDgamma DsbD gamma f 47.4 75 0.0016 21.3 5.5 53 28-81 13-78 (104)
188 PF11732 Thoc2: Transcription- 43.6 38 0.00082 22.1 3.2 35 212-246 42-76 (77)
189 PHA03075 glutaredoxin-like pro 41.6 37 0.00081 24.0 3.1 67 28-99 3-69 (123)
190 cd02951 SoxW SoxW family; SoxW 40.3 1.1E+02 0.0025 21.3 5.7 18 28-45 16-33 (125)
191 TIGR02681 phage_pRha phage reg 40.2 28 0.0006 24.3 2.4 26 76-101 2-28 (108)
192 cd02955 SSP411 TRX domain, SSP 39.2 1.4E+02 0.0031 21.3 6.1 60 30-89 19-97 (124)
193 PRK09381 trxA thioredoxin; Pro 35.6 1.4E+02 0.003 20.1 7.9 58 29-86 24-88 (109)
194 cd03020 DsbA_DsbC_DsbG DsbA fa 34.1 71 0.0015 24.6 4.1 22 29-50 80-101 (197)
195 cd02957 Phd_like Phosducin (Ph 34.0 1.6E+02 0.0034 20.2 6.8 57 30-89 28-92 (113)
196 cd02962 TMX2 TMX2 family; comp 33.7 2E+02 0.0043 21.4 6.5 58 30-87 51-122 (152)
197 cd02948 TRX_NDPK TRX domain, T 33.6 1.5E+02 0.0032 19.9 8.2 55 30-86 21-84 (102)
198 PF09413 DUF2007: Domain of un 33.0 42 0.00091 20.7 2.2 32 30-61 1-32 (67)
199 PTZ00102 disulphide isomerase; 33.0 2.7E+02 0.0059 24.7 8.2 75 29-103 52-141 (477)
200 cd04911 ACT_AKiii-YclM-BS_1 AC 32.7 50 0.0011 21.4 2.5 24 38-61 15-38 (76)
201 COG5494 Predicted thioredoxin/ 32.6 1.1E+02 0.0024 24.2 4.7 69 29-97 12-85 (265)
202 cd02954 DIM1 Dim1 family; Dim1 31.9 1.8E+02 0.0038 20.5 5.4 55 30-86 18-81 (114)
203 PRK11657 dsbG disulfide isomer 31.5 71 0.0015 26.0 3.8 20 30-49 121-140 (251)
204 COG3118 Thioredoxin domain-con 31.0 3.2E+02 0.007 23.0 8.0 76 27-102 44-132 (304)
205 cd02987 Phd_like_Phd Phosducin 30.5 2.4E+02 0.0053 21.4 6.7 56 30-88 87-150 (175)
206 cd02956 ybbN ybbN protein fami 30.5 1.6E+02 0.0034 19.2 6.9 56 30-85 16-78 (96)
207 PRK10996 thioredoxin 2; Provis 30.4 2.1E+02 0.0046 20.6 8.7 57 30-86 56-119 (139)
208 cd01976 Nitrogenase_MoFe_alpha 30.0 3.9E+02 0.0084 23.6 11.3 92 28-123 173-268 (421)
209 PF13728 TraF: F plasmid trans 29.5 2.4E+02 0.0053 22.3 6.4 52 30-81 124-189 (215)
210 PF13098 Thioredoxin_2: Thiore 28.6 54 0.0012 22.3 2.4 21 29-49 8-28 (112)
211 TIGR01764 excise DNA binding d 28.1 90 0.002 17.2 3.0 26 72-97 23-48 (49)
212 cd03003 PDI_a_ERdj5_N PDIa fam 28.1 1.8E+02 0.004 19.2 6.1 55 29-84 21-83 (101)
213 PF15608 PELOTA_1: PELOTA RNA 27.9 1.6E+02 0.0035 20.3 4.4 32 28-59 56-87 (100)
214 PF12062 HSNSD: heparan sulfat 27.7 2E+02 0.0044 25.8 6.0 43 30-82 63-105 (487)
215 KOG3703 Heparan sulfate N-deac 26.2 4E+02 0.0086 24.8 7.5 56 31-96 82-140 (873)
216 TIGR01068 thioredoxin thioredo 26.1 1.9E+02 0.0041 18.7 7.9 55 30-84 18-79 (101)
217 cd02994 PDI_a_TMX PDIa family, 25.9 2E+02 0.0044 18.9 7.1 52 30-81 20-77 (101)
218 PF06110 DUF953: Eukaryotic pr 25.6 1.4E+02 0.0031 21.2 4.0 55 36-90 36-106 (119)
219 COG2761 FrnE Predicted dithiol 23.9 38 0.00083 27.0 0.9 24 28-51 6-29 (225)
220 TIGR01130 ER_PDI_fam protein d 23.8 4E+02 0.0086 23.3 7.5 73 30-102 22-111 (462)
221 PF06053 DUF929: Domain of unk 23.5 1.6E+02 0.0036 24.0 4.4 47 30-83 62-113 (249)
222 KOG0190 Protein disulfide isom 23.3 3.9E+02 0.0085 24.3 7.1 74 30-103 46-135 (493)
223 COG5515 Uncharacterized conser 23.1 57 0.0012 20.0 1.4 22 29-50 2-27 (70)
224 cd02996 PDI_a_ERp44 PDIa famil 22.3 2.4E+02 0.0053 18.9 4.7 55 30-84 22-89 (108)
225 PF09314 DUF1972: Domain of un 22.3 88 0.0019 24.2 2.6 20 82-101 154-173 (185)
226 PF12728 HTH_17: Helix-turn-he 21.9 1.6E+02 0.0035 16.7 3.2 29 71-99 22-50 (51)
227 KOG2501 Thioredoxin, nucleored 21.2 3.7E+02 0.0079 20.2 6.4 35 30-64 36-78 (157)
228 PRK09266 hypothetical protein; 20.6 3.1E+02 0.0067 22.3 5.7 56 47-102 200-260 (266)
229 cd02965 HyaE HyaE family; HyaE 20.5 1.4E+02 0.0031 20.9 3.2 59 30-88 31-98 (111)
230 PRK10877 protein disulfide iso 20.5 1E+02 0.0022 24.7 2.8 22 29-50 110-131 (232)
231 PRK15371 effector protein YopJ 20.1 4.2E+02 0.0091 22.2 6.2 66 182-248 23-89 (287)
232 cd03021 DsbA_GSTK DsbA family, 20.1 1.6E+02 0.0034 23.0 3.7 34 28-61 1-38 (209)
No 1
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=100.00 E-value=5.5e-33 Score=216.39 Aligned_cols=223 Identities=57% Similarity=0.996 Sum_probs=199.0
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHhc--------
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRI-------- 100 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~-------- 100 (256)
+++||+|.+||||-|||.+|.+.||+|+.++|++..+.+++.+.+.+||+|..+|..+.||..|+.-|....
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l~ 169 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDLG 169 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceechhHHHHHHHHHHhccCCCCHH
Confidence 699999999999999999999999999999999999999999999999999998888999999998874322
Q ss_pred ------CCCCC----------C-----------------CCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhc
Q 040684 101 ------HLDNA----------S-----------------SQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITT 147 (256)
Q Consensus 101 ------~~~~~----------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (256)
|.... . ..+.+.+.|..|+++++.++++|++|+...+.++.|.|+.+
T Consensus 170 eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~q 249 (370)
T KOG3029|consen 170 EIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFSQ 249 (370)
T ss_pred HHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHHH
Confidence 21000 0 11245789999999999999999999999999999999999
Q ss_pred cCC----CcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhC-CCCCcCCCCCChhHHHHHhhhhh
Q 040684 148 QGN----FSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAEIWVDALN-GRHYLGGSKPNLADLAVFGVLRP 222 (256)
Q Consensus 148 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~~~fl~Gd~~T~ADi~l~~~l~~ 222 (256)
.+. |+..|+.+..++|...++.+.+++++++++.+.++.+.++++.+-..|+ +++|+.|++|++||+.+|+.|..
T Consensus 250 ~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~s 329 (370)
T KOG3029|consen 250 AGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRS 329 (370)
T ss_pred cCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhH
Confidence 888 8899999999999999999999999999999999999999999999885 57999999999999999999999
Q ss_pred hhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 223 IRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 223 ~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
+.....+.+...+..|..|+-||+.+.+.
T Consensus 330 m~gc~afkd~~q~t~I~eW~~rmealV~e 358 (370)
T KOG3029|consen 330 MEGCQAFKDCLQNTSIGEWYYRMEALVEE 358 (370)
T ss_pred hhhhhHHHHHHhcchHHHHHHHHHHHHhc
Confidence 97766666777889999999999988765
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.98 E-value=6.9e-31 Score=208.41 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=135.3
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-h-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCCCC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-E-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDNAS 106 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~ 106 (256)
.++||+++.||+|++++++|+++||+|+.+.+++..+. + +++||.|+||+|+++|.+|+||.+|++||+++|+...+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~ 89 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLM 89 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCC
Confidence 48999999999999999999999999999999875543 4 458999999999999999999999999999999876666
Q ss_pred CCCHHH----HHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCch
Q 040684 107 SQSDEE----KKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITD 182 (256)
Q Consensus 107 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (256)
|.++.. +.|..++...+...... .. . + .....+.
T Consensus 90 p~~~~~ra~~~~~~~~~~~~~~~~~~~---------------~~-~--------------~------------~~~~~~~ 127 (211)
T PRK09481 90 PVYPVARGESRLMMHRIEKDWYSLMNK---------------IV-N--------------G------------SASEADA 127 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH---------------Hh-c--------------C------------CHHHHHH
Confidence 665432 33333332221111000 00 0 0 0001123
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+.+.+.+..++++|++++|++|+++|+|||.+++.+.++...+.......+|+|.+|++||.++|.-
T Consensus 128 ~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rp~~ 196 (211)
T PRK09481 128 ARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSF 196 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHhccHHH
Confidence 456778888899999999999999999999999999998775433211124689999999999999875
No 3
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=2.3e-29 Score=199.67 Aligned_cols=200 Identities=19% Similarity=0.265 Sum_probs=138.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhHhhcCCCcccEEE-ECCeEeeccHHHHHHHHHhcCCCCCC-
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEIKWSDYKKVPILK-VDGEQMVDSSDIMDKLFQRIHLDNAS- 106 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~~- 106 (256)
|+||++..||+|+|||++|+++||+|+.+.++.... ...+.+|.++||+|+ ++|..|+||.+|++||+++|+.+.+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~ 80 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTG 80 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCCC
Confidence 689999999999999999999999999998864332 235688999999995 78999999999999999999875554
Q ss_pred CCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHH----HHHhhhHHHHHHHHHHHhhcCCch
Q 040684 107 SQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLV----AKYAGAAAMYFVSKKLKKRHNITD 182 (256)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 182 (256)
+..+..++|+.++...+...+.+.+.....+. + ......... ....+. .... ......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~ 142 (210)
T PRK10387 81 KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPE---F-------ATPSARQYFIDKKEASIGD--FDAL------LAHTPG 142 (210)
T ss_pred cccHHHHHHHHHHHHHhhcchhcccccCCCcc---c-------CCHHHHHHHHHhHHhccCC--HHHH------HhcCHH
Confidence 34566777777776555444333221110000 0 000000000 000000 0000 001124
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+.+.+.|..++++|++ +|++||++|+||+++++++.++...+ .+..+|+|.+|++||+++++.
T Consensus 143 ~~~~~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~---~~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 143 LIKEINADLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVK---GIEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeec---CCCCCHHHHHHHHHHHHHhCC
Confidence 567788889999999976 99999999999999999999986542 123469999999999999985
No 4
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=191.32 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=144.5
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhh--Hhhc-CCCcccEEEECCeEeeccHHHHHHHHHhcC-CC
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE--IKWS-DYKKVPILKVDGEQMVDSSDIMDKLFQRIH-LD 103 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~--~~~~-p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~-~~ 103 (256)
..++||++..|||++|++++|++|||+|+.++.|..++.+ ++.| +.++||||+++|.+|+||..|++||++.++ ++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 4599999999999999999999999999999999887766 4478 799999999999999999999999999999 58
Q ss_pred CCCCCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchH
Q 040684 104 NASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDE 183 (256)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (256)
+++|.++..++..++..+.+...+...... .... ......+..
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~----------------------------------~~~~---~~~e~~~~~ 130 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRF----------------------------------VVAA---KGGEEQEAA 130 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHH----------------------------------HHhh---cCchHHHHH
Confidence 889999876666665555554332211000 0000 011122345
Q ss_pred HHHHHHHHHHHHHHhC-CCCCcCCCCCChhHHHHHhhhhhhhcccc------ccCcccCCcHHHHHHHHHhhhcc
Q 040684 184 RVSLYEAAEIWVDALN-GRHYLGGSKPNLADLAVFGVLRPIRHLKS------GRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 184 ~~~~~~~l~~~~~~L~-~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~------~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.+++.+.|..+|+.|. +++|++|+++++.|+++++++.++..... ......+|+|.+|++||.+.+..
T Consensus 131 ~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V 205 (231)
T KOG0406|consen 131 KEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAV 205 (231)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhH
Confidence 6778899999999888 78999999999999999988777754321 11235679999999999988765
No 5
>PLN02473 glutathione S-transferase
Probab=99.96 E-value=6.4e-29 Score=197.71 Aligned_cols=192 Identities=16% Similarity=0.222 Sum_probs=134.5
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLD 103 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 103 (256)
.++||+++.||+++||+++|+++||+|+.+.++...+ ++ +++||.|+||+|+++|.+|+||.+|++||+++++..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 4899999999999999999999999999998876432 23 558999999999999999999999999999999743
Q ss_pred --CCCCCCHH----HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhh
Q 040684 104 --NASSQSDE----EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKR 177 (256)
Q Consensus 104 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (256)
.+.+.+.. +..|..+..+.+.....+.+.... .... . +. . ...
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~-----------~~-------~--~~~ 130 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLV---------FKPR--L-----------GE-------P--CDV 130 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHH---------hccc--c-----------cC-------C--CCh
Confidence 35555533 444555544433322111100000 0000 0 00 0 000
Q ss_pred cCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccc-cCcccCCcHHHHHHHHHhhhcc
Q 040684 178 HNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSG-RDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~-~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.....+.+.++.+++.|++++|++||++|+|||++++.+.++...... ..+..+|+|.+|++||.++|+-
T Consensus 131 ~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 205 (214)
T PLN02473 131 ALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAW 205 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhh
Confidence 0112344567778888999999889999999999999999998776432111 1246799999999999999875
No 6
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-28 Score=177.59 Aligned_cols=190 Identities=16% Similarity=0.175 Sum_probs=146.3
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-----hHh-hcCCCcccEEEECCeEeeccHHHHHHHHHhcC
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-----EIK-WSDYKKVPILKVDGEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-----~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 101 (256)
.+.+||+++.|.+++|||++|..+||+|+.+.+++...+ +++ +||.++||+|++||.+++||.||+.||++.+|
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 457999999999999999999999999999999876542 354 89999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCc
Q 040684 102 LDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNIT 181 (256)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (256)
.++++|.++..++..+.+...+...+.|.-. +..+. .+.++ ...++..
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQN------l~vl~-------------------------~l~ek-~~~~~~~ 131 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQN------LSVLK-------------------------MLNEK-EPGYGDQ 131 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchh------hHHHH-------------------------Hhccc-ccchhhH
Confidence 9999999988888777776666544444210 00000 01110 1111222
Q ss_pred hHHHHHHHHHHHHHHHhC--CCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALN--GRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~--~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.....+.+.+..+|+.|. .++|.+||++|+||+.+.+.+....... .++..||-|.+..+.+.+.|.=
T Consensus 132 W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA~rf~--vdl~PYPti~ri~e~l~elpaF 201 (217)
T KOG0868|consen 132 WAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNANRFH--VDLTPYPTITRINEELAELPAF 201 (217)
T ss_pred HHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhccchhhhhhhhcc--ccCCcCchHHHHHHHHHhCHHH
Confidence 444556666677777665 3689999999999999999999885433 6888999999999999988764
No 7
>PRK15113 glutathione S-transferase; Provisional
Probab=99.96 E-value=9.6e-28 Score=190.80 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=132.5
Q ss_pred CceEEEecC--CCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhc
Q 040684 28 SDVVLYQYE--ACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRI 100 (256)
Q Consensus 28 ~~~~Ly~~~--~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 100 (256)
+.++||+.+ .||+|++|+++|+++||+|+.+.+++..+ ++ +++||.|+||+|++||.+|+||.+|++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 448999976 79999999999999999999999987543 23 458999999999999999999999999999999
Q ss_pred CCCC---CCCCCHH----HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHH
Q 040684 101 HLDN---ASSQSDE----EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKK 173 (256)
Q Consensus 101 ~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (256)
+.+. +.|.++. +++|+.+++..+...+........ + . .
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~-------------------------~- 128 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVV--------F-A-------------------------G- 128 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchh--------c-c-------------------------C-
Confidence 8654 6665533 455666664433322110000000 0 0 0
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHHhCC-CCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 174 LKKRHNITDERVSLYEAAEIWVDALNG-RHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~L~~-~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.......+...+.+.+.+..++++|++ ++|++|+ +|+|||.+++.+.++...+ ..+ .|+|.+|++||.++|.-
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~~--~~~--~p~l~~~~~r~~~rp~~ 202 (214)
T PRK15113 129 AKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNRLVLHG--DEV--PERLADYATFQWQRASV 202 (214)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHhcCHHH
Confidence 000111234556678888888889975 4799996 9999999999998775432 222 38999999999999865
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-27 Score=189.03 Aligned_cols=185 Identities=19% Similarity=0.295 Sum_probs=135.6
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc---hhhH-hhcCCCcccEEEECCe-EeeccHHHHHHHHHhcCCCC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS---KKEI-KWSDYKKVPILKVDGE-QMVDSSDIMDKLFQRIHLDN 104 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~---~~~~-~~~p~~~vP~L~~~g~-~l~eS~~I~~yL~~~~~~~~ 104 (256)
++||+.+.||+|.||+++|.++|++|+.+.++... .+++ .+||.|+||+|+++|. +|+||.+|++||+++|+.+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 58999999999999999999999999999998763 2334 5899999999999665 89999999999999998765
Q ss_pred CCCCCHH---HH----HHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhh
Q 040684 105 ASSQSDE---EK----KWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKR 177 (256)
Q Consensus 105 ~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (256)
+.|.++. .+ .|+.+....+...+....... ..... .. ..
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------------~~------~~ 126 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL---------LGSEP-------------------EL------LE 126 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh---------ccccc-------------------cc------cH
Confidence 6565542 33 333333222222211110000 00000 00 00
Q ss_pred cCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhc
Q 040684 178 HNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 250 (256)
.......+.+.+.+..+++.|++++|++|+++|+|||.+++.+.++...+ ..+..+|+|.+|++|+.++|.
T Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~~~~~--~~~~~~p~l~~w~~r~~~rp~ 197 (211)
T COG0625 127 AALEAARAEIRALLALLEALLADGPYLAGDRFTIADIALAPLLWRLALLG--EELADYPALKAWYERVLARPA 197 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHhhhcC--cccccChHHHHHHHHHHcCCc
Confidence 11234567788889999999999999999999999999999999875544 244779999999999999987
No 9
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=5.8e-27 Score=185.45 Aligned_cols=195 Identities=22% Similarity=0.329 Sum_probs=137.4
Q ss_pred EEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhHhhcCCCcccEEE-ECCeEeeccHHHHHHHHHhcCCCCCCC-
Q 040684 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEIKWSDYKKVPILK-VDGEQMVDSSDIMDKLFQRIHLDNASS- 107 (256)
Q Consensus 31 ~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~~~- 107 (256)
+||++..||+|+|||++|.++|++|+.+.+..... ..+++||.|+||+|+ ++|..++||.+|++||+++|+.+.+.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~ 80 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGK 80 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCC
Confidence 58999999999999999999999999987754322 236789999999998 789999999999999999998654433
Q ss_pred CCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHh-------hcCC
Q 040684 108 QSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKK-------RHNI 180 (256)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 180 (256)
...+..+|+.++...+...+.+.+....... +..... ..++..++... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~ 139 (209)
T TIGR02182 81 VSPEIEAWLRKVTGYANKLLLPRFAKSDLPE------------FATQSA---------RKYFTDKKEASAGNFSALLNHT 139 (209)
T ss_pred ChHHHHHHHHHHHHHhhhhhccccccCCCcc------------cCCHHH---------HHHHHHHHHHhcCCHHHHHccC
Confidence 3466788888877766555444322110000 000000 00011110000 0011
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCC-cHHHHHHHHHhhhcc
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHT-RIGDWYTRMESSVGS 251 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p-~L~~w~~r~~~~p~~ 251 (256)
++..+.+.+.|+.++++|++++|++| ++|+|||++++.+.++...+ .. .+| +|.+|++||+++++.
T Consensus 140 ~~~~~~~~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~---~~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 140 PGLLEEINADLEELDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVA---GI-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCC-CCCHHHHHHHHHhcCeeeec---CC-CCChHHHHHHHHHHHHhCC
Confidence 34567788889999999999999965 69999999999999876532 11 255 999999999999874
No 10
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.95 E-value=3.2e-27 Score=186.16 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=131.2
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-----hh-HhhcCCCcccEEEE-CCeEeeccHHHHHHHHHhcCC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-----KE-IKWSDYKKVPILKV-DGEQMVDSSDIMDKLFQRIHL 102 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-----~~-~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~ 102 (256)
|+||+.+.| ++++++++|+++||+|+.+.+++..+ ++ .++||.|+||+|++ ||.+|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589998866 79999999999999999999886532 23 45899999999985 889999999999999999986
Q ss_pred CCCC-CCCH-H---HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhh
Q 040684 103 DNAS-SQSD-E---EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKR 177 (256)
Q Consensus 103 ~~~~-~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (256)
..+. +.++ + +++|+.+....+...+.+.+. .. .. .
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~--------------~~----~~-----------------~----- 119 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFR--------------PD----TP-----------------E----- 119 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccC--------------CC----Ch-----------------H-----
Confidence 5543 4332 2 345555544433322111100 00 00 0
Q ss_pred cCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 178 HNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.......+.+.+.++.+++.|++++||+|+++|+|||++++++.+....+ ..+..+|+|.+|+++|.++|.-
T Consensus 120 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 191 (201)
T PRK10542 120 EYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWAYAVK--LNLEGLEHIAAYMQRVAERPAV 191 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhccC--CCcccchHHHHHHHHHHcCHHH
Confidence 00113456677888999999998999999999999999999998875433 3456789999999999999865
No 11
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.95 E-value=3.9e-27 Score=187.50 Aligned_cols=182 Identities=19% Similarity=0.290 Sum_probs=127.3
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEE-----CC--eEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKV-----DG--EQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~-----~g--~~l~eS~~I~~yL~ 97 (256)
++||+.+ +++|++|+++|+++||+|+.+.+++..+ ++ +++||.|+||+|++ +| .+|+||.+|++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 6899887 7999999999999999999999886542 23 45899999999997 45 47999999999999
Q ss_pred HhcCCCCCCCCCH----HHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHH
Q 040684 98 QRIHLDNASSQSD----EEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKK 173 (256)
Q Consensus 98 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (256)
++++ .+.+.++ .++.|+.|....+...+... .. +..... .
T Consensus 81 ~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~--~--------------------- 124 (215)
T PRK13972 81 EKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQN-HH----------FNHAAP--Q--------------------- 124 (215)
T ss_pred HhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeee-ee----------eeccCC--C---------------------
Confidence 9986 2444433 24555555544332211000 00 000000 0
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 174 LKKRHNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
......+...+.+.+.+..++++|++++|++||++|+|||++++.+..+... ...+..+|+|.+|++||.++|.-
T Consensus 125 -~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~--~~~~~~~P~l~~w~~r~~~rp~~ 199 (215)
T PRK13972 125 -TIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQ--RIDLAMYPAVKNWHERIRSRPAT 199 (215)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHHHHHHHHHhhc--CCcchhCHHHHHHHHHHHhCHHH
Confidence 0000012234567778888889999899999999999999998877544322 23467799999999999999875
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.95 E-value=6.6e-27 Score=184.48 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=133.4
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-h-HhhcCCCcccEEE-ECCeEeeccHHHHHHHHHhcCCCCCC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-E-IKWSDYKKVPILK-VDGEQMVDSSDIMDKLFQRIHLDNAS 106 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-~-~~~~p~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~~ 106 (256)
++||+++.||++++||++|+++||+|+.+.++...++ + ..+||.|+||+|+ ++|.+++||.+|++||+++++...+.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999999999999988865433 3 3479999999998 57899999999999999998765566
Q ss_pred CCCHH----HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCch
Q 040684 107 SQSDE----EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITD 182 (256)
Q Consensus 107 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (256)
+.++. +++|..+.+..+...+.. + . .. .... .. ........
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~-~-~---~~------~~~~----------------------~~--~~~~~~~~ 125 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALVS-V-R---EQ------ARPA----------------------AQ--QSEDELLR 125 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-H-H---HH------hCcc----------------------cc--ccHHHHHH
Confidence 65543 334444443333211100 0 0 00 0000 00 00001123
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccC-cccCCcHHHHHHHHHhhhcccc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRD-MVEHTRIGDWYTRMESSVGSSR 253 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~-~~~~p~L~~w~~r~~~~p~~~~ 253 (256)
..+.+.+.|+.++++|++++ ++||++|+|||.+++.+.++........ ...+|+|.+|++||.++|+-.|
T Consensus 126 ~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~ 196 (202)
T PRK10357 126 QREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFAR 196 (202)
T ss_pred HHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhh
Confidence 45678888999999998878 9999999999999999987754221112 3568999999999999998643
No 13
>PLN02395 glutathione S-transferase
Probab=99.95 E-value=1.2e-26 Score=184.72 Aligned_cols=190 Identities=15% Similarity=0.196 Sum_probs=131.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCC-
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLD- 103 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~- 103 (256)
++||+.+.| +++|++++|+++|++|+.+.++...+ ++ +++||.|+||+|+++|.+|+||.+|++||+++++..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 899996654 79999999999999999999886432 34 458999999999999999999999999999999752
Q ss_pred -CCCCCCHH----HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhc
Q 040684 104 -NASSQSDE----EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRH 178 (256)
Q Consensus 104 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (256)
.+.|.++. +..|..+.+..+...+........ +.... .... ...
T Consensus 82 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~----------------------~~~ 130 (215)
T PLN02395 82 PDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHIL------FASKM---GFPA----------------------DEK 130 (215)
T ss_pred cCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHH------hhhhc---cCCC----------------------cHH
Confidence 35554432 455555554433322111100000 00000 0000 000
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhcc-ccccCcccCCcHHHHHHHHHhhhcc
Q 040684 179 NITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHL-KSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~-~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+...+.+.+.+..+++.|++++|++|+++|+|||.+++++.++... +....+..+|+|.+|++++.++|+-
T Consensus 131 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~ 204 (215)
T PLN02395 131 VIKESEEKLAKVLDVYEARLSKSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAW 204 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHH
Confidence 112345677888889999999889999999999999999988776322 1112356789999999999999875
No 14
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.95 E-value=1.2e-26 Score=184.01 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=129.9
Q ss_pred EEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc-----hhhH-hhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCC
Q 040684 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS-----KKEI-KWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDN 104 (256)
Q Consensus 31 ~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~-----~~~~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~ 104 (256)
+||++..||+++++|++|+++||+|+.+.+++.. .+++ ++||.|+||+|+++|.+|+||.+|++||+++++...
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999888532 2234 489999999999999999999999999999998766
Q ss_pred CCCCCHH----HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHH--Hhhc
Q 040684 105 ASSQSDE----EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKL--KKRH 178 (256)
Q Consensus 105 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 178 (256)
+.+.+.. +.+|..++...+.......+.. + ...+. ....
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~-------------------------~~~~~~~~~~~ 125 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQ----------Y-------------------------LREKLGVEEEA 125 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHH----------H-------------------------HHhhcCCCHHH
Confidence 6665533 2333333322121110000000 0 00000 0000
Q ss_pred CCchHHHHHHHHHHHHHHHhCC--CCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 179 NITDERVSLYEAAEIWVDALNG--RHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~L~~--~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+...+.+.+.|..++++|++ ++||+|+++|+|||.+++.+.+..... ..+..+|+|.+|+++|.++|.-
T Consensus 126 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~~~~~--~~~~~~p~l~~~~~~~~~rp~~ 198 (210)
T TIGR01262 126 RNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVYNAERFG--VDLTPYPTLRRIAAALAALPAF 198 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHHHHcC--CCcccchHHHHHHHHHhcCHHH
Confidence 0112345578888999999986 469999999999999999998875332 3457799999999999999865
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.95 E-value=1.8e-26 Score=183.20 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=121.5
Q ss_pred ecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhh--HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCCCCCCCHH
Q 040684 34 QYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE--IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDNASSQSDE 111 (256)
Q Consensus 34 ~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~--~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~ 111 (256)
++..||||+||+++|+++|++|+.+.+++..+++ +++||.|+||+|+++|.+|+||.+|++||+++++...+. ++.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~~~ 93 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--TPA 93 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--CHH
Confidence 4566999999999999999999999999765543 558999999999999999999999999999999865432 222
Q ss_pred HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 040684 112 EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAA 191 (256)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (256)
.++. ++..+...+... ... ....+...+.+.+.|
T Consensus 94 ~~a~---i~~~~~~~~~~~---------------------------------------~~~----~~~~~~~~~~~~~~l 127 (213)
T PLN02378 94 EFAS---VGSNIFGTFGTF---------------------------------------LKS----KDSNDGSEHALLVEL 127 (213)
T ss_pred HHHH---HHHHHHHHHHHH---------------------------------------Hhc----CChhhHHHHHHHHHH
Confidence 2211 111111110000 000 000112335666778
Q ss_pred HHHHHHhC--CCCCcCCCCCChhHHHHHhhhhhhhcc-cc--cc-CcccCCcHHHHHHHHHhhhcc
Q 040684 192 EIWVDALN--GRHYLGGSKPNLADLAVFGVLRPIRHL-KS--GR-DMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 192 ~~~~~~L~--~~~fl~Gd~~T~ADi~l~~~l~~~~~~-~~--~~-~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..++++|+ +++|++||++|+|||++++++.++... .. .. ....+|+|.+|++||.++|+-
T Consensus 128 ~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~ 193 (213)
T PLN02378 128 EALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSF 193 (213)
T ss_pred HHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCe
Confidence 88999887 468999999999999999998776432 11 11 235689999999999999876
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.94 E-value=6.3e-26 Score=179.17 Aligned_cols=180 Identities=17% Similarity=0.234 Sum_probs=124.4
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-----hH---hhcCCCcccEEEECCeEeeccHHHHHHHHHhc
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-----EI---KWSDYKKVPILKVDGEQMVDSSDIMDKLFQRI 100 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-----~~---~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 100 (256)
.++||+++.+++++++|++|+++||+|+.+.++..... ++ +.||.|+||+|++||.+|+||.+|++||++++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~ 83 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKY 83 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 48999999999999999999999999999977532111 11 37999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCC
Q 040684 101 HLDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNI 180 (256)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (256)
+.. ..+...+.+..++.......... +.. . ..+ ... ..
T Consensus 84 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------~------------~~~-~~~-----~~ 121 (205)
T PTZ00057 84 KIC---GESELNEFYADMIFCGVQDIHYK-FNN--------------------T------------NLF-KQN-----ET 121 (205)
T ss_pred CCC---CCCHHHHHHHHHHHHHHHHHHHH-Hhh--------------------h------------HHH-HHH-----HH
Confidence 742 22222222222221211111000 000 0 000 000 01
Q ss_pred chHHHHHHHHHHHHHHHhCCC--CCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 181 TDERVSLYEAAEIWVDALNGR--HYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~--~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
+...+.+.+.+..+++.|+++ +|++||++|+|||++++.+.++... ....+..+|+|.+|++||+++|+-
T Consensus 122 ~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~-~~~~l~~~P~l~~~~~r~~~~P~~ 193 (205)
T PTZ00057 122 TFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETK-YPNSLKNFPLLKAHNEFISNLPNI 193 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHh-ChhhhccChhHHHHHHHHHhChHH
Confidence 223456777778888888643 7999999999999999998876531 123567899999999999999875
No 17
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.94 E-value=7.9e-26 Score=180.08 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=121.8
Q ss_pred cCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCC---CCCCCC
Q 040684 35 YEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLD---NASSQS 109 (256)
Q Consensus 35 ~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~---~~~~~~ 109 (256)
...||+|++|+++|.++||+|+.+.+++..+ ++ +++||.|+||+|+++|.+|+||.+|++||+++|+.. .+.+.+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 4679999999999999999999999998765 34 458999999999999999999999999999999753 233444
Q ss_pred HHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHHH
Q 040684 110 DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYE 189 (256)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (256)
+..+... .+ + .+.+.. ++ ... .....+...+++.+
T Consensus 96 ~~~~~~~---~~-l----~~~~~~----------~~-------------------------~~~--~~~~~~~~~~~l~~ 130 (236)
T TIGR00862 96 PESNTAG---LD-I----FAKFSA----------YI-------------------------KNS--NPEANDNLEKGLLK 130 (236)
T ss_pred HHHHHHH---HH-H----HHHHHH----------HH-------------------------HcC--CHHHHHHHHHHHHH
Confidence 3322211 01 1 111000 00 000 00001123345777
Q ss_pred HHHHHHHHhC------------------CCCCcCCCCCChhHHHHHhhhhhhhccc---cccC-cccCCcHHHHHHHHHh
Q 040684 190 AAEIWVDALN------------------GRHYLGGSKPNLADLAVFGVLRPIRHLK---SGRD-MVEHTRIGDWYTRMES 247 (256)
Q Consensus 190 ~l~~~~~~L~------------------~~~fl~Gd~~T~ADi~l~~~l~~~~~~~---~~~~-~~~~p~L~~w~~r~~~ 247 (256)
.+..++++|+ +++|+.|+++|+|||++++.+.++.... .+.+ ...+|+|.+|++++.+
T Consensus 131 ~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~ 210 (236)
T TIGR00862 131 ALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYA 210 (236)
T ss_pred HHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhc
Confidence 7777887775 5799999999999999999999887531 1234 4678999999999998
Q ss_pred hhc
Q 040684 248 SVG 250 (256)
Q Consensus 248 ~p~ 250 (256)
++.
T Consensus 211 ~~s 213 (236)
T TIGR00862 211 REE 213 (236)
T ss_pred cch
Confidence 875
No 18
>PRK11752 putative S-transferase; Provisional
Probab=99.94 E-value=3.2e-25 Score=181.20 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=127.9
Q ss_pred ceEEEecCCCcchHHHHHHHHhC------CCCeEEEEcCCcch----hh-HhhcCCCcccEEEEC----CeEeeccHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYY------RIPYKVVEVNPISK----KE-IKWSDYKKVPILKVD----GEQMVDSSDIM 93 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~------gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~----g~~l~eS~~I~ 93 (256)
.++||+.+ ||+|++|+++|+++ |++|+.+.+++..+ ++ +++||.|+||+|+++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 49999975 99999999999997 89999998876432 23 458999999999984 36899999999
Q ss_pred HHHHHhcCCCCCCCCCHH----HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHH
Q 040684 94 DKLFQRIHLDNASSQSDE----EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYF 169 (256)
Q Consensus 94 ~yL~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (256)
+||+++++. +.|.++. ++.|+.+..... ..+...+.. . +. .
T Consensus 123 ~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~-~------~~-----------------~-------- 167 (264)
T PRK11752 123 LYLAEKFGA--FLPKDLAARTETLNWLFWQQGSA-PFLGGGFGH-F------YA-----------------Y-------- 167 (264)
T ss_pred HHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHH-H------HH-----------------h--------
Confidence 999999873 5554433 444554443321 110000000 0 00 0
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhcc---c--cccCcccCCcHHHHHHH
Q 040684 170 VSKKLKKRHNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHL---K--SGRDMVEHTRIGDWYTR 244 (256)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~---~--~~~~~~~~p~L~~w~~r 244 (256)
... ......+...+++.+.|..++++|++++||+||++|+|||++++++.++... . .......+|+|.+|+++
T Consensus 168 -~~~-~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~r 245 (264)
T PRK11752 168 -APE-KIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKE 245 (264)
T ss_pred -CCc-cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHH
Confidence 000 0000112344567788899999999889999999999999999988766321 1 11235678999999999
Q ss_pred HHhhhcc
Q 040684 245 MESSVGS 251 (256)
Q Consensus 245 ~~~~p~~ 251 (256)
|.++|.-
T Consensus 246 v~~rPs~ 252 (264)
T PRK11752 246 IAERPAV 252 (264)
T ss_pred HHhCHHH
Confidence 9999876
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.93 E-value=7.7e-25 Score=178.11 Aligned_cols=169 Identities=19% Similarity=0.238 Sum_probs=120.3
Q ss_pred cCCCcchHHHHHHHHhCCCCeEEEEcCCcchhh--HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCCCCCCCHHH
Q 040684 35 YEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE--IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDNASSQSDEE 112 (256)
Q Consensus 35 ~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~--~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~~ 112 (256)
...||+|++++++|+++||+|+.+.+++..+++ +++||.|+||+|+++|.+|+||.+|++||+++++.+.+. ...+.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~-~~~er 148 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA-TPPEK 148 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC-CHHHH
Confidence 455999999999999999999999998765433 458999999999999999999999999999999875543 22222
Q ss_pred HHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 040684 113 KKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAE 192 (256)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (256)
..+.+++...+. .. +. .....+...+.+.+.+.
T Consensus 149 a~i~~~l~~~~~----~~--------------~~-----------------------------~~~~~~~~~~~l~~~l~ 181 (265)
T PLN02817 149 ASVGSKIFSTFI----GF--------------LK-----------------------------SKDPGDGTEQALLDELT 181 (265)
T ss_pred HHHHHHHHHHHH----HH--------------hc-----------------------------cCCcchHHHHHHHHHHH
Confidence 222221111110 00 00 00001122345667788
Q ss_pred HHHHHhC-CCCCcCCCCCChhHHHHHhhhhhhhcccc---ccC-cccCCcHHHHHHHHHhhhcc
Q 040684 193 IWVDALN-GRHYLGGSKPNLADLAVFGVLRPIRHLKS---GRD-MVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 193 ~~~~~L~-~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~---~~~-~~~~p~L~~w~~r~~~~p~~ 251 (256)
.+++.|+ +++|++|+++|+|||++++.+.++..... ... ...+|+|.+|+++|.++|.-
T Consensus 182 ~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~ 245 (265)
T PLN02817 182 SFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESF 245 (265)
T ss_pred HHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhH
Confidence 8899887 46999999999999999999987643211 111 25689999999999998865
No 20
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-24 Score=171.82 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=139.6
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh----h-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcC-C
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK----E-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIH-L 102 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~----~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~-~ 102 (256)
.++||+++.|+.|+++.+++.++|++|+.+.++...+. + +++||.|+||+|+++|..++||.+|+.||.++|+ .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999988865542 3 5689999999999999999999999999999997 2
Q ss_pred CC-CCCCCHH----HHHHHHHHHhHhHHhh--hhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHH
Q 040684 103 DN-ASSQSDE----EKKWRAWVDNHLVHVL--SPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLK 175 (256)
Q Consensus 103 ~~-~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (256)
.. +++.+.. +.+|+.+.++.+.... ...+... .. ....
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~----------~~-------------------------~~~~ 126 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPL----------LV-------------------------GLPL 126 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecc----------ee-------------------------cccC
Confidence 22 4566543 4445544444443321 0100000 00 0000
Q ss_pred hhcCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhh--ccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 176 KRHNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIR--HLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~--~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
......+...++...+..++..|.++.|+.|+++|+||+.+.+.+..+. .. .......+|++.+|++++.++|+-
T Consensus 127 ~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~~ 203 (226)
T KOG0867|consen 127 NPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPAY 203 (226)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCccH
Confidence 0112345677889999999999999999999999999999999999883 22 234667899999999999998774
No 21
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.2e-24 Score=163.82 Aligned_cols=188 Identities=15% Similarity=0.255 Sum_probs=139.1
Q ss_pred CCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc-hhhHh-hcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCC
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS-KKEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDN 104 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~-~~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~ 104 (256)
|+.++|++|+..+++..+|++++..|++|+...+.... ++.++ ..|+|++|+|..||..|.+|.+|++||+++||
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 77899999999999999999999999999999998766 56666 47999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHH-HhhcCCc-h
Q 040684 105 ASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKL-KKRHNIT-D 182 (256)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 182 (256)
+...++...+|.+.+.+.+.......+... ....+. +....++ .
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~----------------------------------~~~~~~g~~~~~~~~~ 123 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFKDFRWEIFRQP----------------------------------YTAPEAGKSEEELDKL 123 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhhhHHHHHHHHh----------------------------------hhhhhhccchhhhhhh
Confidence 344566677777777666554322210000 000000 0000111 2
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALN--GRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~--~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+.....++.+++.|. ++.||+||++|+||+.++..+..+...........+|+|.++.+|+.++|.-
T Consensus 124 ~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~i 194 (206)
T KOG1695|consen 124 YLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNI 194 (206)
T ss_pred hccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchH
Confidence 34455666677777776 4579999999999999999999987632223456679999999999999864
No 22
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=156.17 Aligned_cols=219 Identities=16% Similarity=0.191 Sum_probs=133.6
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhh-----HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKE-----IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLD 103 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~-----~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 103 (256)
.+.||+++.|.-++|||+++.++||.|+...|++..++. +++||.|.||||+++..+|+|+..|++|++++|-+.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 389999999999999999999999999999999876542 458999999999999999999999999999998543
Q ss_pred -CCCCCC-----HHHHHHHHHH-----HhHhH-HhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhh----HHH
Q 040684 104 -NASSQS-----DEEKKWRAWV-----DNHLV-HVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGA----AAM 167 (256)
Q Consensus 104 -~~~~~~-----~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 167 (256)
.+.|.- +++....... +.+.. ..+.+-+... ...|.+..+ +.....+.++.+.-..++ ...
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~--s~iP~~~~i-R~~~~k~~~~v~~l~~~e~pdla~a 182 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTD--SMIPKYAEI-RRHLAKATTDVMKLDHEEEPDLAEA 182 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhcc--ccCcccHHH-HHHHHHHHHHHHHHHhhcCchhhHH
Confidence 333332 1111111111 01000 0011110000 000000000 000001111111111111 011
Q ss_pred H-HHHHHHHhhc----C---CchHHHHHHHHHHHHHHHhCC----CCCcCCCCCChhHHHHHhhhhhhhccccccCcc--
Q 040684 168 Y-FVSKKLKKRH----N---ITDERVSLYEAAEIWVDALNG----RHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMV-- 233 (256)
Q Consensus 168 ~-~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~L~~----~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~-- 233 (256)
+ ..++++..+. . ......++...|...|..|.+ ..||+|+.+|+||+.+.+.|+++...+......
T Consensus 183 y~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~ 262 (325)
T KOG4420|consen 183 YLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWED 262 (325)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhccc
Confidence 1 1112222211 1 124455666666777777776 479999999999999999999998776433332
Q ss_pred -cCCcHHHHHHHHHhhhc
Q 040684 234 -EHTRIGDWYTRMESSVG 250 (256)
Q Consensus 234 -~~p~L~~w~~r~~~~p~ 250 (256)
..|||..|++|+++|+.
T Consensus 263 gsrpnle~Yf~rvrrR~s 280 (325)
T KOG4420|consen 263 GSRPNLESYFERVRRRFS 280 (325)
T ss_pred CCCccHHHHHHHHHhhhH
Confidence 45999999999999875
No 23
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=8.4e-22 Score=153.48 Aligned_cols=224 Identities=24% Similarity=0.335 Sum_probs=148.4
Q ss_pred ccccCccCCCC--CceEEEecCC-------CcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEee
Q 040684 17 QAKEQPRSQKF--SDVVLYQYEA-------CPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMV 87 (256)
Q Consensus 17 ~~~~~~~~~~m--~~~~Ly~~~~-------sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~ 87 (256)
+.+|++...++ ..+.||+|+. ||||+|+.++|+..+|||+.+...+... +..|++|.++.+|..+.
T Consensus 31 ~~~p~~hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~r-----Sr~G~lPFIELNGe~ia 105 (281)
T KOG4244|consen 31 NPKPKIHKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKRR-----SRNGTLPFIELNGEHIA 105 (281)
T ss_pred CCCccchhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccceee-----ccCCCcceEEeCCeecc
Confidence 34455666666 4599999974 8999999999999999999998876332 78999999999999999
Q ss_pred ccHHHHHHHHHhcCCCC-CCCC-CHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhc-cCCCcchHHHHHHHh-h
Q 040684 88 DSSDIMDKLFQRIHLDN-ASSQ-SDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITT-QGNFSFTEKLVAKYA-G 163 (256)
Q Consensus 88 eS~~I~~yL~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 163 (256)
||..|+.+|.++++-+. +.+. .+..+++.++++..+.+.+...- .....+ +..... -+..+.....+..+. .
T Consensus 106 DS~~I~~~L~~hf~~~~~L~~e~~a~s~Al~rm~dnhL~~~l~y~k--~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~ 181 (281)
T KOG4244|consen 106 DSDLIEDRLRKHFKIPDDLSAEQRAQSRALSRMADNHLFWILLYYK--GADDAW--LNTDRKLIGLPGFLFPLLLPLFWK 181 (281)
T ss_pred ccHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchHH--HHHHHhccCccccchHHHHHHHHH
Confidence 99999999999998766 3322 24578888999988877754321 111110 000000 001111111111111 0
Q ss_pred hHHHHHHHHHHHhh-c--CCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccc-c-ccC--cccCC
Q 040684 164 AAAMYFVSKKLKKR-H--NITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLK-S-GRD--MVEHT 236 (256)
Q Consensus 164 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~-~-~~~--~~~~p 236 (256)
........++.... . ...+..+-+.+.|..+.+.|++++||+||++|-+|+++|+.|..+.+.- . ..+ ..++|
T Consensus 182 ~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p 261 (281)
T KOG4244|consen 182 AIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFP 261 (281)
T ss_pred HHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhch
Confidence 00000111111111 0 1124455667778888889999999999999999999999999998731 1 111 24689
Q ss_pred cHHHHHHHHHhhh
Q 040684 237 RIGDWYTRMESSV 249 (256)
Q Consensus 237 ~L~~w~~r~~~~p 249 (256)
||..|++||++..
T Consensus 262 ~l~eYceRIr~~~ 274 (281)
T KOG4244|consen 262 NLLEYCERIRKEI 274 (281)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 24
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.88 E-value=6.5e-22 Score=144.34 Aligned_cols=142 Identities=59% Similarity=0.988 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCC-chHHHHH
Q 040684 109 SDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNI-TDERVSL 187 (256)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 187 (256)
+++..+|..|+++.+.+.+.|++|+...+++..|+|++..+.|+..++...++.|...++.+.+++++++++ ++.++.+
T Consensus 5 ~~~e~kWr~W~d~~lv~~~~pniyrt~~ea~~~f~yi~~~~~f~~~er~~~~~~Ga~aM~~isk~lkk~~~i~~D~r~~L 84 (149)
T cd03197 5 DPEEMKWRKWADDHLVHLISPNIYRTWSEALASFDYITPSGYFGYWEKFFAKYVGAAAMYLISKYLKKPRLLQDDVREWL 84 (149)
T ss_pred hHHHHHHHHHHHhhhHhhccHHHhCCHHHHHHhhhhHhcCCCccHHHHHHHHHhhHHHHHHHHHHhccccCCCchHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999998 6789999
Q ss_pred HHHHHHHHHHhC-CCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhc
Q 040684 188 YEAAEIWVDALN-GRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 188 ~~~l~~~~~~L~-~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 250 (256)
.+.++.+-+.+. +++|++|++||+|||++++++..+.......++..+|+|.+|++||++..|
T Consensus 85 ~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~~v~ 148 (149)
T cd03197 85 YDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDAAVQ 148 (149)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHHHhc
Confidence 999999998665 458999999999999999999888765333377889999999999998765
No 25
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-19 Score=132.11 Aligned_cols=197 Identities=20% Similarity=0.308 Sum_probs=145.1
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-hHhhcCCCcccEEEE-CCeEeeccHHHHHHHHHhcCCCCCC-
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-EIKWSDYKKVPILKV-DGEQMVDSSDIMDKLFQRIHLDNAS- 106 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~~~~~- 106 (256)
|+||-|..||||.|+|+..-.+|||++.+.....+.+ ..++-+..+||+|+- ||+.+.||..|++|+++..+.+.+-
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 5899999999999999999999999999887754433 255678999999996 8999999999999999999876443
Q ss_pred CCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCC------
Q 040684 107 SQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNI------ 180 (256)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 180 (256)
...+++.+|++-+..+....+.|.+.....+++.. .++..+|..+|.......
T Consensus 81 ~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T---------------------~sA~~yf~~KKe~s~g~F~~~l~~ 139 (215)
T COG2999 81 KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFAT---------------------PSARKYFTDKKEASEGSFESLLNH 139 (215)
T ss_pred CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccC---------------------HHHHHHHHhhhhhccccHHHHHhc
Confidence 34588999999999999999888765433222211 112234444443322222
Q ss_pred -chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 181 -TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 181 -~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.....++.+.|+.+...+.+.. -....+++-||.+|+.|+.+..+. .+.-..++..|+.+|++..+.
T Consensus 140 t~~~~~~i~~dl~~l~~Li~~~s-~~n~~l~~ddi~vFplLRnlt~v~---gi~wps~v~dy~~~msektqV 207 (215)
T COG2999 140 TAQYLKRIQADLRALDKLIVGPS-AVNGELSEDDILVFPLLRNLTLVA---GIQWPSRVADYRDNMSEKTQV 207 (215)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcc-hhccccchhhhhhhHHhccceecc---cCCCcHHHHHHHHHHHHhhCc
Confidence 2345667777777777665555 333489999999999999986654 454456899999999987553
No 26
>PLN02907 glutamate-tRNA ligase
Probab=99.82 E-value=5.7e-19 Score=160.42 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=116.2
Q ss_pred CCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEE-CCeEeeccHHHHHHHHHhcCCCCC
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKV-DGEQMVDSSDIMDKLFQRIHLDNA 105 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~~~~ 105 (256)
|+ ++||+.+.| .+.++.++|++.|++|+.+.. +|.|+||+|++ +|..|+||.+|++||++.++...+
T Consensus 1 ~~-~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~~----------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L 68 (722)
T PLN02907 1 ME-AKLSFPPDS-PPLAVIAAAKVAGVPLTIDPS----------LKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGF 68 (722)
T ss_pred Ce-EEEEECCCC-ChHHHHHHHHHcCCCcEEeec----------CCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCC
Confidence 44 789999877 578899999999999998762 58999999996 889999999999999999987767
Q ss_pred CCCCHH-HHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHH
Q 040684 106 SSQSDE-EKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDER 184 (256)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (256)
.+.++. ..++..|+... ... . ..
T Consensus 69 ~p~d~~erAqV~qWL~~~-~~~-~------------------------------------------------------~~ 92 (722)
T PLN02907 69 YGQDAFESSQVDEWLDYA-PTF-S------------------------------------------------------SG 92 (722)
T ss_pred CCCCHHHHHHHHHHHHHH-hhc-c------------------------------------------------------cH
Confidence 665543 22333333211 000 0 00
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhh-ccccccCcccCCcHHHHHHHHHhhhc
Q 040684 185 VSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIR-HLKSGRDMVEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 185 ~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~-~~~~~~~~~~~p~L~~w~~r~~~~p~ 250 (256)
..+.+.+..++++|++++||+|+++|+|||++++.+.... ..........+|+|.+|+++|.++|.
T Consensus 93 ~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 93 SEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 1234557788889999999999999999999999886541 11111134578999999999999998
No 27
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.5e-18 Score=128.34 Aligned_cols=168 Identities=24% Similarity=0.326 Sum_probs=123.9
Q ss_pred CCCcchHHHHHHHHhCCCCeEEEEcCCcchhh-H-hhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCCCCCC-CHHH
Q 040684 36 EACPFCNKVKAFLDYYRIPYKVVEVNPISKKE-I-KWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDNASSQ-SDEE 112 (256)
Q Consensus 36 ~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~-~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~-~~~~ 112 (256)
..||+|+++.+.|.++|++|++..||+..+++ + .++|.+++|+|..|+..++||..|.++|+++++.+.+... .++.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~ 98 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPES 98 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHH
Confidence 45999999999999999999999999887655 4 4899999999999999999999999999999988766543 3332
Q ss_pred HHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 040684 113 KKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAE 192 (256)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (256)
... ..+.+... . .++.+ .+....+.....+...|+
T Consensus 99 asa---g~diF~kF-~---------------------------------------~fi~k--sk~~~n~~~e~~Ll~~L~ 133 (221)
T KOG1422|consen 99 ASA---GSDIFAKF-S---------------------------------------AFIKK--SKDAANDGLEKALLKELE 133 (221)
T ss_pred Hhh---HHHHHHHH-H---------------------------------------HHHhC--chhhccchHHHHHHHHHH
Confidence 222 12222111 0 01111 011122334567888899
Q ss_pred HHHHHhCC---CCCcCCCCCChhHHHHHhhhhhhhcccc-ccCc---ccCCcHHHHHHHHHhh
Q 040684 193 IWVDALNG---RHYLGGSKPNLADLAVFGVLRPIRHLKS-GRDM---VEHTRIGDWYTRMESS 248 (256)
Q Consensus 193 ~~~~~L~~---~~fl~Gd~~T~ADi~l~~~l~~~~~~~~-~~~~---~~~p~L~~w~~r~~~~ 248 (256)
+++++|.. ++||.||++|.|||.+.+-|+-+..+.. ..++ ...+.+.+|++.+-++
T Consensus 134 ~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~ 196 (221)
T KOG1422|consen 134 KLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYAR 196 (221)
T ss_pred HHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhH
Confidence 99999985 7899999999999999999999876532 2233 2347899999998776
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.76 E-value=2.3e-18 Score=113.64 Aligned_cols=72 Identities=38% Similarity=0.593 Sum_probs=65.6
Q ss_pred EEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCC
Q 040684 32 LYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLD 103 (256)
Q Consensus 32 Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 103 (256)
||++..||||+|+|++|+++||+|+.+.++...+ .+ .+.+|.++||+|++||.+++||.+|++||+++|+.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999986654 33 448999999999999999999999999999999865
No 29
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.73 E-value=2.1e-17 Score=109.68 Aligned_cols=73 Identities=64% Similarity=1.154 Sum_probs=66.0
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEEC----CeEeeccHHHHHHHHHhcC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVD----GEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~~I~~yL~~~~~ 101 (256)
+++||+++.||+|+++|++|.++||+|+.+.+++....+++.+|.++||+|+++ |.+++||.+|++||+++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 489999999999999999999999999999998765556778999999999975 7899999999999998753
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.70 E-value=8.9e-17 Score=106.56 Aligned_cols=71 Identities=28% Similarity=0.476 Sum_probs=62.2
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc--hhh-HhhcCCCcccEEEE--CCeEeeccHHHHHHHHHhc
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKE-IKWSDYKKVPILKV--DGEQMVDSSDIMDKLFQRI 100 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~-~~~~p~~~vP~L~~--~g~~l~eS~~I~~yL~~~~ 100 (256)
++||+++.||+|+|++++|+++||+|+.+.++... ..+ .++||.++||+|++ +|..++||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999887432 233 45899999999998 4689999999999999875
No 31
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.70 E-value=5.1e-17 Score=106.38 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++||+++.|++|+++|++|+++|++|+.+.+++... ++ .++||.|+||+|++||..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999999876422 23 458999999999999999999999999985
No 32
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.70 E-value=8.5e-17 Score=105.62 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=63.7
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhc
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRI 100 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 100 (256)
|+||+.+.||+|++++++|+++|++|+.+.++.... ++ .+.||.|+||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999999999886543 23 348999999999999999999999999999875
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.70 E-value=9.2e-17 Score=108.29 Aligned_cols=68 Identities=24% Similarity=0.356 Sum_probs=61.6
Q ss_pred CCCcchHHHHHHHHhCCCCeEEEEcCCcchhh--HhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCC
Q 040684 36 EACPFCNKVKAFLDYYRIPYKVVEVNPISKKE--IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLD 103 (256)
Q Consensus 36 ~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~--~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 103 (256)
..||||+++|++|+++||+|+.+.+++..+++ +++||.|+||+|+++|.+++||.+|++||++.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 56999999999999999999999999877554 448999999999999999999999999999998754
No 34
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.69 E-value=1.3e-16 Score=104.96 Aligned_cols=71 Identities=27% Similarity=0.342 Sum_probs=62.9
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-h-HhhcCC-CcccEEEECCeEeeccHHHHHHHHHhc
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-E-IKWSDY-KKVPILKVDGEQMVDSSDIMDKLFQRI 100 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-~-~~~~p~-~~vP~L~~~g~~l~eS~~I~~yL~~~~ 100 (256)
|+||+++.||+|+++|++|+++|++|+.+.++...+. + .++||. +++|+|+++|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999988865432 3 357995 999999999999999999999999864
No 35
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.69 E-value=1.3e-16 Score=104.16 Aligned_cols=69 Identities=33% Similarity=0.564 Sum_probs=60.7
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhHhhcCCCcccEEEEC-CeEeeccHHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEIKWSDYKKVPILKVD-GEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~~~~p~~~vP~L~~~-g~~l~eS~~I~~yL~~ 98 (256)
|+||++..||+|+|+|++|.++|++|+.+.++.... ..++.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 579999999999999999999999999998885432 23557899999999985 8999999999999974
No 36
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.68 E-value=1.8e-16 Score=104.38 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=61.7
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~ 98 (256)
++||+++.||+|++++++|+++|++|+.+.+++..+ ++ .+.||.++||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 589999999999999999999999999999886432 23 3489999999999999999999999999974
No 37
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.66 E-value=5.7e-16 Score=105.57 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=66.9
Q ss_pred cccCccCCCC-CceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-hH-hhcCCCcccEEEEC-CeEeeccHHHH
Q 040684 18 AKEQPRSQKF-SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-EI-KWSDYKKVPILKVD-GEQMVDSSDIM 93 (256)
Q Consensus 18 ~~~~~~~~~m-~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-~~-~~~p~~~vP~L~~~-g~~l~eS~~I~ 93 (256)
++..|....+ ..++||+++.||+|++++++|+++|++|+.+.++..... ++ +.||.++||+|+++ |..++||.+|+
T Consensus 6 ~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~ 85 (89)
T cd03055 6 AKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIIC 85 (89)
T ss_pred ccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHH
Confidence 3444444444 459999999999999999999999999999998865543 33 48999999999986 89999999999
Q ss_pred HHHH
Q 040684 94 DKLF 97 (256)
Q Consensus 94 ~yL~ 97 (256)
+||+
T Consensus 86 ~yLe 89 (89)
T cd03055 86 EYLD 89 (89)
T ss_pred HhhC
Confidence 9985
No 38
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.66 E-value=5.1e-16 Score=102.72 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=63.1
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHhc
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRI 100 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 100 (256)
++||+++.|++|++++++|+++|++|+.+.++...+ ++ .+.||.++||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 579999999999999999999999999999876432 23 348999999999999999999999999999875
No 39
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.66 E-value=5.4e-16 Score=102.63 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=62.2
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
++||+++.||+|+++|++|+++|++|+.+.++.... ++ .++||.++||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 799999999999999999999999999998876422 23 34899999999999999999999999999863
No 40
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.66 E-value=5.3e-16 Score=102.29 Aligned_cols=67 Identities=36% Similarity=0.596 Sum_probs=61.2
Q ss_pred eEEEecC-------CCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHhcC
Q 040684 30 VVLYQYE-------ACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 30 ~~Ly~~~-------~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 101 (256)
++||+++ .||+|++++++|+++|++|+.+.++.. +.+|.++||+|+++|.+++||.+|++||+++|+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----KRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----cCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 6899998 589999999999999999999988753 358999999999999999999999999999875
No 41
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.66 E-value=4.4e-16 Score=101.58 Aligned_cols=66 Identities=29% Similarity=0.457 Sum_probs=59.5
Q ss_pred EEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhH-hhcCCCcccEEEE-CCeEeeccHHHHHHH
Q 040684 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEI-KWSDYKKVPILKV-DGEQMVDSSDIMDKL 96 (256)
Q Consensus 31 ~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~-~~~p~~~vP~L~~-~g~~l~eS~~I~~yL 96 (256)
+||+++.||+|++++++|+++|++|+.+.++...+ .++ ++||.++||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 79999999999999999999999999999987544 344 5899999999998 599999999999996
No 42
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.65 E-value=5e-16 Score=101.83 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=61.9
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhH-hhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEI-KWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
++||+++.|++|+++|++|+++|++|+.+.++.... +++ .+||.++||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 799999999999999999999999999999875322 233 4799999999999999999999999999763
No 43
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.65 E-value=5.4e-16 Score=101.49 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=61.1
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh--h-HhhcCCCcccEEEECCeEeeccHHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK--E-IKWSDYKKVPILKVDGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~--~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~ 98 (256)
++||+++.|++|+++|++|+++|++|+.+.++..... + .++||.+++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999998864332 2 3479999999999999999999999999974
No 44
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.64 E-value=8.7e-16 Score=100.74 Aligned_cols=68 Identities=31% Similarity=0.535 Sum_probs=60.4
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++||+++.||+|++++++|+++|++|+.+.++.... ++ .+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999999885432 23 348999999999999999999999999984
No 45
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.4e-15 Score=116.09 Aligned_cols=187 Identities=16% Similarity=0.246 Sum_probs=125.0
Q ss_pred CCCceEEEecCCCcchHHHHHHHHhCCCCeEE--EEcCC-----------c-ch---h---------hH--h----hcCC
Q 040684 26 KFSDVVLYQYEACPFCNKVKAFLDYYRIPYKV--VEVNP-----------I-SK---K---------EI--K----WSDY 73 (256)
Q Consensus 26 ~m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~--~~v~~-----------~-~~---~---------~~--~----~~p~ 73 (256)
+-.++.||..-.|||+++..++-..+|+.=-. ..+.+ . .+ . ++ + -++.
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 44679999999999999999999999987211 11111 1 00 0 11 1 2345
Q ss_pred CcccEEEE--CCeEee-ccHHHHHHHHHhcCCCC-----CCCCCHHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhh
Q 040684 74 KKVPILKV--DGEQMV-DSSDIMDKLFQRIHLDN-----ASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYI 145 (256)
Q Consensus 74 ~~vP~L~~--~g~~l~-eS~~I~~yL~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
-+||||-| ..+++. ||..|++.+...|.... ++| .+.+.-++.+++.+...+.--+|+.-
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP--~~Lr~eId~~n~~Iy~~vNNGVYk~G---------- 195 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYP--EALRTEIDELNKWIYDTVNNGVYKAG---------- 195 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCC--HHHHHHHHHHHhhhcccccCceeeec----------
Confidence 78999999 345554 99999999987774321 222 22333333344444333332222210
Q ss_pred hccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhc
Q 040684 146 TTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRH 225 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~ 225 (256)
|+ + .....++..+.+.+.|+.+|+.|+++.||+||++|.||+.||..|.++..
T Consensus 196 -----FA--~--------------------tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~ 248 (324)
T COG0435 196 -----FA--T--------------------TQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDP 248 (324)
T ss_pred -----cc--c--------------------hHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecc
Confidence 00 0 00123466788899999999999999999999999999999999999864
Q ss_pred c--cc----ccCcccCCcHHHHHHHHHhhhcc
Q 040684 226 L--KS----GRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 226 ~--~~----~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
+ +. ...+.++|||..|...+-+.||-
T Consensus 249 VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~ 280 (324)
T COG0435 249 VYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGF 280 (324)
T ss_pred eEEeeeecccchhhcCchHHHHHHHHhcCccc
Confidence 3 22 23467799999999999998886
No 46
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.63 E-value=1.7e-15 Score=101.45 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=62.4
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc----hhh-HhhcCCCcccEEEEC---CeEeeccHHHHHHHHHhcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS----KKE-IKWSDYKKVPILKVD---GEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~----~~~-~~~~p~~~vP~L~~~---g~~l~eS~~I~~yL~~~~~ 101 (256)
++||+++. |+|++++++|+++||+|+.+.++... .++ .++||.++||+|+++ |..|+||.+|++||+++|+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 68999986 99999999999999999999987532 123 348999999999996 8999999999999999986
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.61 E-value=1.5e-15 Score=99.79 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=59.6
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEE-CCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKV-DGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~ 97 (256)
++||+++.||+|+++|++|+++|++|+.+.++...+ ++ .+.||.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 589999999999999999999999999999875432 23 44899999999996 7889999999999985
No 48
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.61 E-value=3.1e-15 Score=98.66 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=60.5
Q ss_pred EEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc---hhh-HhhcCCCcccEEEE-CCeEeeccHHHHHHHHH
Q 040684 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS---KKE-IKWSDYKKVPILKV-DGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 31 ~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~---~~~-~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~~ 98 (256)
+||+++.||+|++++++|+++|++|+.+.++... .++ .++||.+++|+|++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 7999999999999999999999999999998642 233 44899999999997 58999999999999986
No 49
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.61 E-value=5.1e-15 Score=98.49 Aligned_cols=73 Identities=14% Similarity=0.304 Sum_probs=61.8
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhHh---hcCCCcccEEEECCeEeeccHHHHHHHHHhcC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEIK---WSDYKKVPILKVDGEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~~---~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 101 (256)
+++||+++.|+.|++++++|++.|++|+.+.++.... .+.+ ..|.++||+|++||..++||.+|++||+++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 3689999999999999999999999999998875321 1111 23589999999999999999999999999986
No 50
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.60 E-value=3.8e-15 Score=97.70 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=59.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++||+++.||++++++++|+++|++|+.+.++...+ ++ .++||.++||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 489999999999999999999999999998874321 23 448999999999999999999999999984
No 51
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.60 E-value=4.3e-15 Score=98.51 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=61.5
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEEC-CeEeeccHHHHHHHHHhcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVD-GEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 101 (256)
++||+++.| +++++|++|+++|++|+.+.++...+ ++ .++||.+++|+|+++ |..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 69999999999999999998886542 34 448999999999986 8999999999999999875
No 52
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.60 E-value=5.8e-15 Score=97.62 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=61.5
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc----hhhH-hhcCCCcccEEEECCeEeeccHHHHHHHHHhcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS----KKEI-KWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~----~~~~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 101 (256)
++||+++. +++++++++|+++|++|+.+.++... ..++ +.||.++||+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47999886 68999999999999999999988532 2333 489999999999999999999999999999874
No 53
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.60 E-value=3.7e-15 Score=97.72 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=60.4
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++||++..|++|+++|++|+++|++|+.+.+++..+ ++ .+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999999886422 23 347999999999999999999999999985
No 54
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.60 E-value=5e-15 Score=99.19 Aligned_cols=70 Identities=11% Similarity=0.186 Sum_probs=60.6
Q ss_pred EEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc-----hhhHh------hcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS-----KKEIK------WSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 31 ~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~-----~~~~~------~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
+||++..++.|+++|++|+++||+|+.+.+++.. .+++. .+|.++||+|++||.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 7999999999999999999999999999998643 12221 129999999999999999999999999986
Q ss_pred c
Q 040684 100 I 100 (256)
Q Consensus 100 ~ 100 (256)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 55
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.59 E-value=4.8e-15 Score=99.96 Aligned_cols=66 Identities=23% Similarity=0.224 Sum_probs=57.6
Q ss_pred CCCcchHHHHHHHHhCCCCeEEEEcCCcchhh----HhhcCCCcccEEEEC-CeEeeccHHHHHHHHHhcC
Q 040684 36 EACPFCNKVKAFLDYYRIPYKVVEVNPISKKE----IKWSDYKKVPILKVD-GEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 36 ~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~----~~~~p~~~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 101 (256)
..||+|+|+|++|.++||+|+.+.++...... +++||.++||+|+++ |..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 56999999999999999999999887554322 356999999999998 8999999999999999874
No 56
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.58 E-value=4e-15 Score=97.58 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=59.9
Q ss_pred eEEEecCCCcchHHHHHHHHh--CCCCeEEEEcCCcch-hh-HhhcCCCcccEEEE-CCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDY--YRIPYKVVEVNPISK-KE-IKWSDYKKVPILKV-DGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~--~gi~y~~~~v~~~~~-~~-~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~ 97 (256)
++||+++.||+|+++|++|++ +|++|+.+.++.... ++ .+.||.++||+|++ +|..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999999985433 33 45899999999995 8899999999999985
No 57
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=112.65 Aligned_cols=202 Identities=17% Similarity=0.255 Sum_probs=127.6
Q ss_pred ccccccchhhhcccccccCccCCCCCceEEEecCCCcchHHHHHHHHhCCCC----eEEEEc--C-----Ccc-------
Q 040684 3 FSAAAPSLAQDAKPQAKEQPRSQKFSDVVLYQYEACPFCNKVKAFLDYYRIP----YKVVEV--N-----PIS------- 64 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~~Ly~~~~sp~~~kvr~~L~~~gi~----y~~~~v--~-----~~~------- 64 (256)
|...|+|+..-+- .-++.-.+++ .++.||..-.|||++|+.+.+..+|+. +-.+.- + +..
T Consensus 13 f~r~~ssfr~~iS-kd~~~~~pak-gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nD 90 (319)
T KOG2903|consen 13 FKRQASSFRETIS-KDHPIFKPAK-GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIIND 90 (319)
T ss_pred eEEeecccccccC-CCCCccCCCC-ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCc
Confidence 4445555554442 2233333344 889999999999999999999999976 222211 0 000
Q ss_pred hh----------------hHh------hcCCCcccEEEEC--CeEee-ccHHHHHHHHHhcCCC---------CCCCCC-
Q 040684 65 KK----------------EIK------WSDYKKVPILKVD--GEQMV-DSSDIMDKLFQRIHLD---------NASSQS- 109 (256)
Q Consensus 65 ~~----------------~~~------~~p~~~vP~L~~~--g~~l~-eS~~I~~yL~~~~~~~---------~~~~~~- 109 (256)
.+ ++. .++..+||||-|. .+++. ||..|++.+.+.|..- .+.|..
T Consensus 91 s~~l~~~~d~~~g~k~l~elY~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L 170 (319)
T KOG2903|consen 91 SERLGVTPDPLNGAKRLRELYYIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSL 170 (319)
T ss_pred hhcccCCCcccccchhHHHHHhhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHH
Confidence 00 111 1245789999983 34444 9999999998444221 122222
Q ss_pred -HHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCchHHHHHH
Q 040684 110 -DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNITDERVSLY 188 (256)
Q Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (256)
+.+.++..|+.+.+...++..- +. +..+..+....++.
T Consensus 171 ~~~Ide~N~wvy~~INNGVYk~G---------------------FA--------------------~~~e~Ye~~V~~lf 209 (319)
T KOG2903|consen 171 RAQIDETNSWVYDKINNGVYKCG---------------------FA--------------------EKQEAYEEEVNQLF 209 (319)
T ss_pred HHHHhhhhceecccccCceeeec---------------------cc--------------------cccchHHHHHHHHH
Confidence 3345555555444433322210 10 01122345678899
Q ss_pred HHHHHHHHHhCCCC--CcCCCCCChhHHHHHhhhhhhhccc------cccCcc-cCCcHHHHHHHHHh
Q 040684 189 EAAEIWVDALNGRH--YLGGSKPNLADLAVFGVLRPIRHLK------SGRDMV-EHTRIGDWYTRMES 247 (256)
Q Consensus 189 ~~l~~~~~~L~~~~--fl~Gd~~T~ADi~l~~~l~~~~~~~------~~~~~~-~~p~L~~w~~r~~~ 247 (256)
+.|+++|++|+++. |++|+++|.|||.||..+.++..+- ....+. +||+|..|.+++-.
T Consensus 210 e~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~ 277 (319)
T KOG2903|consen 210 EALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYW 277 (319)
T ss_pred HHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHh
Confidence 99999999999876 8999999999999999999886432 112244 89999999999987
No 58
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.56 E-value=3e-14 Score=94.02 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=55.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch----hh-HhhcCC-CcccEEEEC-CeEeeccHHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK----KE-IKWSDY-KKVPILKVD-GEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~----~~-~~~~p~-~~vP~L~~~-g~~l~eS~~I~~yL~~ 98 (256)
++|+.|+..+++.++|++|+++|++|+.+.+++..+ ++ .+.+|. |+||+|+++ |..++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 345555555599999999999999999999886433 34 448999 999999998 9999999999999985
No 59
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.55 E-value=1.7e-14 Score=94.33 Aligned_cols=65 Identities=35% Similarity=0.579 Sum_probs=58.5
Q ss_pred eEEEecC-------CCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 30 VVLYQYE-------ACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 30 ~~Ly~~~-------~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
++||.++ .||+|++++++|+++||+|+.+.++... ++|.++||+|+++|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-----RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-----cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3677777 7999999999999999999999998543 589999999999999999999999999874
No 60
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.54 E-value=1.2e-14 Score=94.34 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=51.7
Q ss_pred CCcchHHHHHHHHhCCCCeEEEEcCC----cch-hh-HhhcCCCcccEEEE-CCeEeeccHHHHHHHHHh
Q 040684 37 ACPFCNKVKAFLDYYRIPYKVVEVNP----ISK-KE-IKWSDYKKVPILKV-DGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 37 ~sp~~~kvr~~L~~~gi~y~~~~v~~----~~~-~~-~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~~~ 99 (256)
.||||+|++++|+++|++|+...+.. ... ++ .++||.++||+|++ +|+++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988732 111 23 44899999999998 889999999999999874
No 61
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.50 E-value=7.4e-14 Score=90.37 Aligned_cols=68 Identities=26% Similarity=0.428 Sum_probs=60.0
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh--h-HhhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK--E-IKWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~--~-~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++||+++.||+|++++++|+++|++|+.+.++..... + .+.+|.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998754432 2 337899999999999999999999999984
No 62
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.46 E-value=2.7e-13 Score=88.74 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=56.3
Q ss_pred EecCCCcchHHHHHHHHhCCCCeEEEEcCCcch---hhH-hhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 33 YQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK---KEI-KWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 33 y~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~---~~~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
-+...|+++++++++|+++|++|+.+.++.... +++ ++||.+++|+|+++|..++||.+|++||+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 356679999999999999999999999886432 334 48999999999999999999999999984
No 63
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.9e-11 Score=91.29 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=125.7
Q ss_pred CcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCCC-CCC--CHHHHH
Q 040684 38 CPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDNA-SSQ--SDEEKK 114 (256)
Q Consensus 38 sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~-~~~--~~~~~~ 114 (256)
..-|..|..+|++.++||..+..+.- -.++|.|.||.|..+.+.+.|-..|+.+.+.+-..... ... .++.++
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~Na----efmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRANA----EFMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCCc----cccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 45689999999999999999876521 12479999999999999999999999999988422111 122 244666
Q ss_pred HHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhc----CCchHHHHHHHH
Q 040684 115 WRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRH----NITDERVSLYEA 190 (256)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 190 (256)
.+++++..+..+-.. + .+ .+-..++-.+..+.-..++..+..+..-.......++++... .++...+++..-
T Consensus 110 ~vslVen~~t~aEl~-~-s~--~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc 185 (257)
T KOG3027|consen 110 YVSLVENLLTTAELY-V-SW--NDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKC 185 (257)
T ss_pred HHHHHHHHHHHHHHH-H-Hh--ccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHH
Confidence 666666555432000 0 00 000111222211111112111111111111112222222222 233555666666
Q ss_pred HHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccc-----cCcccCCcHHHHHHHHHhhh
Q 040684 191 AEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSG-----RDMVEHTRIGDWYTRMESSV 249 (256)
Q Consensus 191 l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~-----~~~~~~p~L~~w~~r~~~~p 249 (256)
++.+...|+.++|+.|+.||-+|..+|+.+..+..+.-. ..+..|+||-++..||.+..
T Consensus 186 ~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~y 249 (257)
T KOG3027|consen 186 CRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQY 249 (257)
T ss_pred HHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 677777899999999999999999999999988665421 12467899999999998864
No 64
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.34 E-value=1.9e-12 Score=89.22 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhh
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSV 249 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p 249 (256)
+...+.+.+.++.+++.|++++|++||++|+||+.+++.+.++...........+|+|.+|++||.++|
T Consensus 27 ~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 27 EEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 356778888899999999999999999999999999999999876553222278999999999999987
No 65
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.32 E-value=6.7e-12 Score=81.28 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=50.1
Q ss_pred CCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 36 EACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 36 ~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
+.+++|.|++++|++.|+||+.+.... . -..+|.|+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~--~--~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN--A--EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC--c--cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 456789999999999999999885321 1 12478899999999999999999999999864
No 66
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.28 E-value=1.7e-11 Score=87.66 Aligned_cols=71 Identities=25% Similarity=0.295 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccc-cccCcccCCcHHHHHHHHHhhhcc
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLK-SGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~-~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
+...+.+.+.+..+++.|++++|++||++|+|||++++.+.++.... ....+..+|+|.+|+++|.++|.-
T Consensus 40 ~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~ 111 (115)
T cd03196 40 EEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLF 111 (115)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHH
Confidence 35567888889999999999999999999999999999887664321 122347899999999999999875
No 67
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.26 E-value=4.9e-11 Score=79.24 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=62.7
Q ss_pred CCCCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhHh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 25 QKFSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 25 ~~m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++-.+++||+.++||+|.+++.+|...||+|+.++++.... .++. .++..+||++..+|..+.++..|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 44456999999999999999999999999999999874432 2343 5788999999999999999999999984
No 68
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.26 E-value=1.2e-11 Score=80.07 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccC-cccCCcHHHHHHH
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRD-MVEHTRIGDWYTR 244 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~-~~~~p~L~~w~~r 244 (256)
+..++++.+.++.++++|++++|++|++||+|||++++++.++........ ...+|+|.+|++|
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 456788899999999999999999999999999999999999987754322 4678999999987
No 69
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.26 E-value=1.7e-11 Score=87.38 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..+++.|++++|++|+++|+|||.+++.+.++...+ .....+|+|.+|+++|.++|.-
T Consensus 43 ~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 110 (114)
T cd03188 43 AARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPGVG--LDLSDWPNLAAYLARVAARPAV 110 (114)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhhcC--CChhhChHHHHHHHHHHhCHHh
Confidence 4567788889999999998899999999999999999998875432 2456789999999999999875
No 70
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.8e-09 Score=87.14 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=123.9
Q ss_pred CcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEE-CCeEeeccHHHHHHHHHhcCCCCCCCC-----CHH
Q 040684 38 CPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKV-DGEQMVDSSDIMDKLFQRIHLDNASSQ-----SDE 111 (256)
Q Consensus 38 sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~~~~~~~-----~~~ 111 (256)
++-|..+.++++..+-|.+.+..+..-. +|.|++|+|+. +|+.+.+-..|+++|...-.+.....+ ...
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~~-----s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~ 91 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPWR-----SPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLAD 91 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCCC-----CCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHH
Confidence 7999999999999996666555442221 68999999998 669999999999999884222222211 134
Q ss_pred HHHHHHHHHhHhHHhhhhhhhccchhHhh-hhhhhhccCCCcc---hHHHHHHHhhhHHHHHHHHHHHhhcCC-----ch
Q 040684 112 EKKWRAWVDNHLVHVLSPNIYRTTSEALE-SFDYITTQGNFSF---TEKLVAKYAGAAAMYFVSKKLKKRHNI-----TD 182 (256)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 182 (256)
..+|..++...+.+++...++....+... .-.+....-.|.. ..-.+++ ...++.....+. ++
T Consensus 92 ~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~--------qAk~rl~l~~g~~~~~e~~ 163 (313)
T KOG3028|consen 92 TLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQR--------QAKERLQLTLGELTEREDQ 163 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHH--------HHHHHHHHHhCCchhhHHH
Confidence 67788888888887765544322111110 0011111222220 0000111 011111111111 12
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccc-----cCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSG-----RDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~-----~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
......+.++.+.+.|+.++|++||+||--|+.+++++..+...... ..+..++||.+|++++++....
T Consensus 164 i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~~f~ 237 (313)
T KOG3028|consen 164 IYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSLYFR 237 (313)
T ss_pred HHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHHHhc
Confidence 33445566777777899999999999999999999999995443211 2245689999999999987543
No 71
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.23 E-value=2.1e-10 Score=83.06 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhh
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESS 248 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~ 248 (256)
+...+.+.+.+..+++.|++++|++||++|+|||++++.+.+............+|+|.+|++||.+.
T Consensus 57 ~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 57 EAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 35677888999999999999999999999999999999999887542222246789999999999863
No 72
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.22 E-value=1.4e-10 Score=83.34 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=59.4
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 180 ITDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.+...+++.+.+..+++.|++++|++|+++|+||+++++++.++.... ..+...+|+|.+|+++|+++|.-
T Consensus 36 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~ 106 (118)
T cd03177 36 PEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEALL-PLDLSKYPNVRAWLERLKALPPY 106 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHHhc-CCChhhCchHHHHHHHHHcccch
Confidence 345667888999999999988899999999999999999998886411 22355789999999999999876
No 73
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.20 E-value=1.1e-10 Score=86.55 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccc------cccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLK------SGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~------~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.|+.+++.|++++|++|+++|+|||++++.+.++.... ....+..+|+|.+|++||.++|.-
T Consensus 37 ~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~ 112 (142)
T cd03190 37 EAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGV 112 (142)
T ss_pred HHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchH
Confidence 4567788889999999998999999999999999999987763211 011245789999999999999876
No 74
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.20 E-value=1.1e-10 Score=82.26 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..+++.|++++|++|+++|+|||++++.+.++...+.. ....+|+|.+|+++|.++|.-
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~rpa~ 103 (107)
T cd03186 35 KARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALGIE-LPKQAKPLKDYMERVFARDSF 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcCCC-CcccchHHHHHHHHHHCCHHH
Confidence 456778888999999999999999999999999999998665433311 124689999999999999975
No 75
>PRK10638 glutaredoxin 3; Provisional
Probab=99.19 E-value=2.1e-10 Score=77.00 Aligned_cols=71 Identities=23% Similarity=0.509 Sum_probs=61.4
Q ss_pred CCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc--hhhH-hhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKEI-KWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
|+++++|..+.||+|.+++.+|+++|++|+.++++... ..++ +.++..++|++..+|..+.+...+..+-.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 77899999999999999999999999999999997543 2234 37899999999999999999988887654
No 76
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.18 E-value=6.5e-11 Score=83.32 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHHhCCC----------CCcCCCCCChhHHHHHhhhhhhhccccccC---cccCCcHHHHHHHHHh
Q 040684 181 TDERVSLYEAAEIWVDALNGR----------HYLGGSKPNLADLAVFGVLRPIRHLKSGRD---MVEHTRIGDWYTRMES 247 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~----------~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~---~~~~p~L~~w~~r~~~ 247 (256)
.....++...+..++++|+++ +||+|+++|+|||++++.+.++...+.... ...+|+|.+|++||.+
T Consensus 28 ~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~a 107 (111)
T cd03204 28 KKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQ 107 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHc
Confidence 356778888888999988754 499999999999999999998865332111 2468999999999999
Q ss_pred hhc
Q 040684 248 SVG 250 (256)
Q Consensus 248 ~p~ 250 (256)
||+
T Consensus 108 Rps 110 (111)
T cd03204 108 RES 110 (111)
T ss_pred CCC
Confidence 985
No 77
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.17 E-value=7.1e-11 Score=83.55 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 250 (256)
...+.+.+.++.+|+.|++++|++|+++|+|||.+++++....... .....+|+|.+|+++|+++|.
T Consensus 43 ~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~ 109 (110)
T cd03180 43 ASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFELP--IERPPLPHLERWYARLRARPA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHHcc--cccccCchHHHHHHHHHhCCC
Confidence 4567788999999999998899999999999999999885443222 245679999999999999875
No 78
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.17 E-value=1.4e-10 Score=75.50 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 37 ACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 37 ~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
.||+|.++.++|+..|++|+.+...... .+|.|++|+|+++|+.+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~~-----~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNPW-----RSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCCC-----CCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 3799999999999999999887654221 268999999999999999999999999875
No 79
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.16 E-value=5.9e-11 Score=85.08 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..+++.|++++|++|+++|+|||++++.+.++...........+|+|.+|+++|.++|+-
T Consensus 45 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 114 (118)
T cd03187 45 ENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPAW 114 (118)
T ss_pred HHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHHH
Confidence 4566788889999999998999999999999999999988875322222345789999999999999875
No 80
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.16 E-value=9.6e-11 Score=84.20 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhh
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSV 249 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p 249 (256)
.....+.+.++.+++.|++++|++||++|+|||++++.+.++..... ....+|+|.+|++|++++|
T Consensus 54 ~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 54 FINPELKKHLDFLEDRLAKKGYFVGDKLTAADIMMSFPLEAALARGP--LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHhHHHHHHHHHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHHHcCc--ccccCchHHHHHHHHhcCC
Confidence 45567888899999999999999999999999999999888754332 4567899999999999876
No 81
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.15 E-value=1.4e-10 Score=80.67 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhc
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 250 (256)
+...+++.+.++.+++.|++++|++|+++|+|||.+++++.+.... ......+|+|.+|++||.++|+
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~p~ 99 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEG--GVDLEDYPAIRRWLARIEALPG 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhcc--CCChhhCcHHHHHHHHHHhCcC
Confidence 3457788999999999999999999999999999999998765432 2245679999999999999885
No 82
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.14 E-value=1e-10 Score=84.95 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHHHHhCC----------------CCCcCCCCCChhHHHHHhhhhhhhccc---cccCc-ccCCcHHH
Q 040684 181 TDERVSLYEAAEIWVDALNG----------------RHYLGGSKPNLADLAVFGVLRPIRHLK---SGRDM-VEHTRIGD 240 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~----------------~~fl~Gd~~T~ADi~l~~~l~~~~~~~---~~~~~-~~~p~L~~ 240 (256)
+...+.+.+.|..++++|++ ++|++|+++|+|||.+++.+.++.... .+..+ ..+|+|.+
T Consensus 28 e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~a 107 (134)
T cd03198 28 ENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWR 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHH
Confidence 35567888999999999986 679999999999999999988774321 12233 67899999
Q ss_pred HHHHHHhhhcc
Q 040684 241 WYTRMESSVGS 251 (256)
Q Consensus 241 w~~r~~~~p~~ 251 (256)
|++||.+||+-
T Consensus 108 w~~ri~aRPsf 118 (134)
T cd03198 108 YLKNAYQREEF 118 (134)
T ss_pred HHHHHHCCHHH
Confidence 99999999864
No 83
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.14 E-value=6.6e-11 Score=82.24 Aligned_cols=63 Identities=38% Similarity=0.609 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHHHHHhCCCC--CcCCCCCChhHHHHHhhhhhhhccccccCc-ccCCcHHHHHHHHHh
Q 040684 181 TDERVSLYEAAEIWVDALNGRH--YLGGSKPNLADLAVFGVLRPIRHLKSGRDM-VEHTRIGDWYTRMES 247 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~--fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~-~~~p~L~~w~~r~~~ 247 (256)
+...+++.+.+..++++|+++. ||+|++||+|||++|+.|..+... .+ ..+|+|.+|++||++
T Consensus 34 ~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~----~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 34 DFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA----DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC----HHTTTCHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcC
Confidence 4567788899999999998876 999999999999999999777643 12 578999999999974
No 84
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.12 E-value=3.6e-10 Score=82.04 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhcc----cccc-CcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHL----KSGR-DMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~----~~~~-~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..+++.|++++|++|+++|+|||++++.+.++... +... ....+|+|.+|+++|+++|+-
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 109 (126)
T cd03185 35 KAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAV 109 (126)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHH
Confidence 356678888999999998889999999999999999998886432 1111 235689999999999999875
No 85
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.10 E-value=1.3e-10 Score=84.24 Aligned_cols=72 Identities=17% Similarity=0.354 Sum_probs=58.9
Q ss_pred CchHHHHHHHHHHHHHHHhCC--CCCcCCCCCChhHHHHHhhhhhhhcccc----ccCcccCCcHHHHHHHHHhhhcc
Q 040684 180 ITDERVSLYEAAEIWVDALNG--RHYLGGSKPNLADLAVFGVLRPIRHLKS----GRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~L~~--~~fl~Gd~~T~ADi~l~~~l~~~~~~~~----~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.+...+.+.+.+..+++.|++ ++|++|+++|+|||.+++++.++...+. ......+|+|.+|+++|.++|.-
T Consensus 30 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v 107 (124)
T cd03184 30 REEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAV 107 (124)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHH
Confidence 446677888889999998875 7999999999999999999987754332 12456789999999999999865
No 86
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.10 E-value=2e-10 Score=80.39 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+++.+.++.+++.|++++|++|+++|+|||++++.+.+....+ ....+|+|.+|+++|+++|.-
T Consensus 30 ~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~ 96 (103)
T cd03207 30 AGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAF 96 (103)
T ss_pred hhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHH
Confidence 4556788889999999998999999999999999999998876432 346789999999999999875
No 87
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.09 E-value=1.2e-09 Score=75.27 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhh
Q 040684 185 VSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESS 248 (256)
Q Consensus 185 ~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~ 248 (256)
+++.+.+..++++|++++|++|+++|+|||++++.+.+. + .....+|+|.+|++||+++
T Consensus 38 ~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---~--~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 38 KEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---G--LASAAPANVQRWLKSCENL 96 (96)
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc---c--cccccChHHHHHHHHHHhC
Confidence 344566777888999999999999999999999988753 1 2235689999999999863
No 88
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.09 E-value=2.4e-10 Score=77.59 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccc-----cCcccCCcHHHHHHHHH
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSG-----RDMVEHTRIGDWYTRME 246 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~-----~~~~~~p~L~~w~~r~~ 246 (256)
...+++.+.++.+++.|++++|++|+++|+|||++++.+.++...... ..+..+|+|.+|++||+
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 456778888999999999999999999999999999999887542111 12467899999999974
No 89
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.07 E-value=4.4e-10 Score=81.09 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+.+.+.+..++++|++++|++|+++|+||+.+++.+.++..... ..+..+|+|.+|++|+.++|+-
T Consensus 36 ~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~v 103 (121)
T cd03209 36 YLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFEP-DCLDAFPNLKDFLERFEALPKI 103 (121)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhCc-cccccChHHHHHHHHHHHCHHH
Confidence 4566778888899999988999999999999999999988864322 2356789999999999999875
No 90
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.06 E-value=4.1e-10 Score=80.60 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCc-ccCCcHHHHHHHHHhhhc
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDM-VEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~-~~~p~L~~w~~r~~~~p~ 250 (256)
+.....+.+.+..+++.|++++|++||++|+|||++++.+.++...+ .++ ..+|+|.+|++++.++|.
T Consensus 48 ~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~l~~~~~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~ 116 (117)
T cd03182 48 ERSKARAADFLAYLDTRLAGSPYVAGDRFTIADITAFVGLDFAKVVK--LRVPEELTHLRAWYDRMAARPS 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHhHHHHhcC--CCCccccHHHHHHHHHHHhccC
Confidence 35667788889999999988899999999999999999998876533 233 478999999999999986
No 91
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.06 E-value=1.3e-09 Score=71.05 Aligned_cols=69 Identities=26% Similarity=0.469 Sum_probs=59.9
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhHh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++++|+.+.||+|.+++-+|...|++|+.++++.... ..++ ..+..++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 5899999999999999999999999999999874432 2333 5688899999999999999999999974
No 92
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.03 E-value=4.7e-10 Score=80.80 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCCcCCCCCChhHHHHHhhhhhhhcc-cc--ccC-cccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNG-RHYLGGSKPNLADLAVFGVLRPIRHL-KS--GRD-MVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~-~~fl~Gd~~T~ADi~l~~~l~~~~~~-~~--~~~-~~~~p~L~~w~~r~~~~p~~ 251 (256)
+..+.+.+.|..+++.|++ ++|++||++|+|||++++.+.++... +. +.. ...+|+|.+|++||.++|.-
T Consensus 30 ~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~ 104 (121)
T cd03201 30 GTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESF 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchh
Confidence 3456688888899999984 79999999999999999987776532 11 111 25789999999999999876
No 93
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.00 E-value=5.3e-10 Score=79.51 Aligned_cols=69 Identities=20% Similarity=0.384 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..+++.|++++|++|+++|+|||.+++.+.+....+.. ....+|+|.+|+++|.++|.-
T Consensus 40 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p~~ 108 (113)
T cd03178 40 RYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWIGID-DLDDFPNVKRWLDRIAARPAV 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhcccc-chhhchHHHHHHHHHhhCHHH
Confidence 456678888899999999889999999999999999999888544321 245689999999999999875
No 94
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.00 E-value=1.4e-09 Score=79.01 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHH-hCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHh--hhcc
Q 040684 182 DERVSLYEAAEIWVDA-LNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMES--SVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~-L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~--~p~~ 251 (256)
...+.+.+.+..+++. +++++|++||++|+|||.+++.+.+....+. ..+..+|+|.+|+++|.+ +|+-
T Consensus 45 ~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~~~p~~ 116 (126)
T cd03183 45 KAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAGY-DVFEGRPKLAAWRKRVKEAGNPLF 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcCC-cccccCchHHHHHHHHHHhcchhH
Confidence 3556788888888886 5557899999999999999998877754332 124678999999999999 7775
No 95
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.00 E-value=7.7e-10 Score=80.39 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhCC---CCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALNG---RHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~---~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..+.+.+.+..+++.|++ ++|++|+++|+||+.+++.+.++..... ..+..+|+|.+|++||.++|.-
T Consensus 36 ~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~v 106 (126)
T cd03210 36 YIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP-GCLDAFPLLKAFVERLSARPKL 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh-HhhhcChHHHHHHHHHHhCcHH
Confidence 345577888888888874 5899999999999999999988754321 2356789999999999999875
No 96
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.00 E-value=9.6e-10 Score=79.23 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhC--CCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 184 RVSLYEAAEIWVDALN--GRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 184 ~~~~~~~l~~~~~~L~--~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.+.+.+.+..+++.|+ +++||+|+++|+|||++++.+.+....+ .++..+|+|.+|++|+.++|+-
T Consensus 46 ~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 113 (121)
T cd03191 46 RHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRFG--VDLSPYPTIARINEACLELPAF 113 (121)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHhC--CCcccCcHHHHHHHHHHhChhH
Confidence 4557788888899997 4579999999999999999988765432 3457889999999999999986
No 97
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.97 E-value=8.2e-10 Score=80.09 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccc-----cccCcccCCcHHHHHHHHH
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLK-----SGRDMVEHTRIGDWYTRME 246 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~-----~~~~~~~~p~L~~w~~r~~ 246 (256)
++......+.|..+++.|++++||+||+||.||+.+++++..+.... ....+..+|||.+|++||.
T Consensus 56 ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 56 DQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 35666777888889999999999999999999999999998876431 1112567899999999983
No 98
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.97 E-value=1.2e-09 Score=80.58 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhC--CCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 185 VSLYEAAEIWVDALN--GRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 185 ~~~~~~l~~~~~~L~--~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
+.+.+.+..+++.|+ +++|++|+++|+|||.+++.+.++..... ..+..+|+|.+|++||.++|+-
T Consensus 42 ~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~-~~l~~~P~l~~~~~rv~~~P~v 109 (137)
T cd03208 42 KAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDP-SLLSDFPLLQAFKTRISNLPTI 109 (137)
T ss_pred HHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhch-hhhccChHHHHHHHHHHcCHHH
Confidence 345677888888887 67899999999999999999988754321 2356799999999999999876
No 99
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.93 E-value=2.6e-09 Score=74.82 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHH
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRME 246 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~ 246 (256)
...+++.+.++.+++.|++++|++|+++|+|||++++.+.++.... .+...+|+|.+|+++++
T Consensus 43 ~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 43 FLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYTHVADEGG--FDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHHHhccccC--CChHhCccHHHHHHhhC
Confidence 4567788888899999988899999999999999999999875433 23567899999999974
No 100
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.91 E-value=2.5e-09 Score=77.21 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccc-cCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSG-RDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~-~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..+++.|++++|++|+++|+|||.+++.+.+....... .....+|+|.+|++++.++|.-
T Consensus 40 ~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 110 (123)
T cd03181 40 AALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIF 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHH
Confidence 456677888899999999889999999999999999999886432111 1135689999999999998865
No 101
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.88 E-value=5.1e-09 Score=74.63 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 184 RVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 184 ~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
..++.+.++.+++.+++++|++|| +|+||+.+++.+.+....+ .+. .|+|.+|++||.++|+-
T Consensus 46 ~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~--~~~--~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 46 IARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYG--LPL--SPAAQAYVDALLAHPAM 108 (114)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHCCHHH
Confidence 444555555555555677899999 9999999999998875432 222 39999999999999875
No 102
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.88 E-value=5.2e-09 Score=76.93 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccc-----cCcccCCcHHHHHHHHHhh
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSG-----RDMVEHTRIGDWYTRMESS 248 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~-----~~~~~~p~L~~w~~r~~~~ 248 (256)
+......+.++.+++.|++++|++||++|.+|+.+++++..+...... ..+..+|||.+|++||.+.
T Consensus 64 ~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~~ 135 (137)
T cd03212 64 EIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILSL 135 (137)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHHh
Confidence 455667777888888999999999999999999999998877543221 1256789999999999875
No 103
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.86 E-value=2.1e-08 Score=65.41 Aligned_cols=66 Identities=21% Similarity=0.412 Sum_probs=55.5
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc--hhhHh-hcCCCcccEEEECCeEeeccHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKEIK-WSDYKKVPILKVDGEQMVDSSDIMD 94 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~ 94 (256)
+++||+.+.||+|.+++.+|+.+||+|+.++++... ..++. +++..++|++..+|..+.+-..+.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 589999999999999999999999999999987432 23444 7888999999999999887666554
No 104
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.86 E-value=6e-09 Score=71.96 Aligned_cols=64 Identities=33% Similarity=0.468 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhcccccc-CcccCCcHHHHHHHH
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGR-DMVEHTRIGDWYTRM 245 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~-~~~~~p~L~~w~~r~ 245 (256)
...+.+.+.+..+++.|++++|++|+++|+||+.+++++.++....... ....+|+|.+|+++|
T Consensus 36 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 36 EAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 4567788889999999999999999999999999999999987644211 146789999999975
No 105
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.85 E-value=5.3e-09 Score=75.28 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhC---CCCCcCCCCCChhHHHHHhhhhhhhcc---ccccCc-ccCCcHHHHHHHHHhhhcc
Q 040684 186 SLYEAAEIWVDALN---GRHYLGGSKPNLADLAVFGVLRPIRHL---KSGRDM-VEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 186 ~~~~~l~~~~~~L~---~~~fl~Gd~~T~ADi~l~~~l~~~~~~---~~~~~~-~~~p~L~~w~~r~~~~p~~ 251 (256)
++.+.++.+++.|+ +++|++| ++|+|||++++++.++... ..+..+ ..+|+|.+|+++|+++|.-
T Consensus 34 ~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~ 105 (120)
T cd03203 34 EAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAY 105 (120)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHH
Confidence 44556666766665 5799999 9999999999999766421 012233 4789999999999999764
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.81 E-value=3.3e-08 Score=65.74 Aligned_cols=59 Identities=10% Similarity=0.424 Sum_probs=49.5
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHhhcCCCcccEEEECCeEee
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIKWSDYKKVPILKVDGEQMV 87 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~~~p~~~vP~L~~~g~~l~ 87 (256)
++++|..+.||+|.+++-+|.++||+|+.++++-... .+++..+...||+++.+|..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 5899999999999999999999999999999984332 2345568899999999886554
No 107
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.77 E-value=6.7e-09 Score=72.68 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHhCC--CCCcCCCCCChhHHHHHhhhhhhhccccccC-cccCCcHHHHHHHH
Q 040684 182 DERVSLYEAAEIWVDALNG--RHYLGGSKPNLADLAVFGVLRPIRHLKSGRD-MVEHTRIGDWYTRM 245 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~--~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~-~~~~p~L~~w~~r~ 245 (256)
...+.+.+.+..+++.|++ ++|++|+++|+|||.+++++.++..... .. ...+|+|.+|++|+
T Consensus 39 ~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~~-~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 39 FLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLDP-KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhCc-hhhHHhChhHHHHHHhC
Confidence 4566777888888888877 7999999999999999999988865432 22 56789999999985
No 108
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.76 E-value=9e-08 Score=62.71 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=56.9
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCC-cccEEEECCeEeeccHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYK-KVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~-~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
+++||+.+.||+|.+++-+|+.+||+|+.++++.... .++. ..+.. .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 4799999999999999999999999999999985421 2232 34444 99999999999999999888754
No 109
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.75 E-value=7.6e-08 Score=62.15 Aligned_cols=67 Identities=24% Similarity=0.560 Sum_probs=57.4
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc--hhhHh-hcCCCcccEEEECCeEeeccHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKEIK-WSDYKKVPILKVDGEQMVDSSDIMDK 95 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~y 95 (256)
++++|+.+.||+|.+++.+|..++++|..+.++... ..++. .++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 378999999999999999999999999999887433 23444 68899999999999999999888764
No 110
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.75 E-value=2.4e-08 Score=71.18 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHhC-CCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALN-GRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~-~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...+.+.+.+..++..|+ +++||+| ++|+||+.+++.+.+....+ .++. |+|.+|++||.++|.-
T Consensus 42 ~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~~~~~~~g--~~l~--p~l~ay~~r~~~rPa~ 107 (114)
T cd03195 42 AAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALMLNRLVLNG--DPVP--ERLRDYARRQWQRPSV 107 (114)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHCCHHH
Confidence 455666666677777774 5589999 59999999999999986654 2342 8999999999999975
No 111
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.73 E-value=1.3e-07 Score=63.56 Aligned_cols=73 Identities=19% Similarity=0.416 Sum_probs=61.7
Q ss_pred ceEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcc--hhhHh-hcC--CCcccEEEECCeEeeccHHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPIS--KKEIK-WSD--YKKVPILKVDGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~--~~~~~-~~p--~~~vP~L~~~g~~l~eS~~I~~yL~~ 98 (256)
++++|+.++||+|.+++-+|+. .|++|+.+.++... .+++. ..+ ..+||++..||..+.+...|..++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 6899999999999999999999 89999999987432 23333 333 36899999999999999999999998
Q ss_pred hcC
Q 040684 99 RIH 101 (256)
Q Consensus 99 ~~~ 101 (256)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 865
No 112
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.5e-07 Score=62.40 Aligned_cols=69 Identities=23% Similarity=0.498 Sum_probs=55.9
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh---h-Hh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK---E-IK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~---~-~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
.+++|..+.||||.+++-+|..+|++|+.+.++..... + ++ .++..+||++.++|..+.....+.++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 58999999999999999999999999999998865531 2 33 4589999999999988876655555443
No 113
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.69 E-value=2e-07 Score=62.83 Aligned_cols=72 Identities=17% Similarity=0.439 Sum_probs=58.2
Q ss_pred eEEEecCCCcchHHHHHHHHhC-----CCCeEEEEcCCcc--hhhHh-hcCC--CcccEEEECCeEeeccHHHHHHHHHh
Q 040684 30 VVLYQYEACPFCNKVKAFLDYY-----RIPYKVVEVNPIS--KKEIK-WSDY--KKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~--~~~~~-~~p~--~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
+++|+.++||+|.+++-+|... +++|+.++++... ..++. .... .+||++..||..+.++..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 6899999999999999999998 4678888776322 22333 3333 69999999999999999999999887
Q ss_pred cC
Q 040684 100 IH 101 (256)
Q Consensus 100 ~~ 101 (256)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.67 E-value=1.9e-07 Score=60.65 Aligned_cols=67 Identities=25% Similarity=0.464 Sum_probs=54.1
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hh-HhhcCCCcccEEEECCeEe--eccHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KE-IKWSDYKKVPILKVDGEQM--VDSSDIMDKL 96 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~-~~~~p~~~vP~L~~~g~~l--~eS~~I~~yL 96 (256)
+++|+.++||+|.+++.+|.+.|++|..++++.... .+ .+.++...+|+|+++|..+ .++..|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 799999999999999999999999999998874322 22 3467889999999988877 4666666554
No 115
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.61 E-value=9.3e-07 Score=63.22 Aligned_cols=116 Identities=20% Similarity=0.258 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhcCCc-------h
Q 040684 110 DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRHNIT-------D 182 (256)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 182 (256)
+++.+|.+.+...+...+.|++.....++ |. + ..+..++..+|.....+.+ +
T Consensus 2 ~~i~~W~~~v~~~~~kL~~PR~~~~~lpE---Fa--T----------------~~A~~yf~~kKe~~~G~F~~~l~~t~~ 60 (128)
T cd03199 2 PEIAAWLKKVGPYYNKLLYPRFVKADLPE---FA--T----------------QSARDYFIEKKEKSIGSFDALLANTPQ 60 (128)
T ss_pred HHHHHHHHHHHHHHHhHHcCccccCCCCc---cC--C----------------HHHHHHHHHHHHhhhCCHHHHHHccHH
Confidence 56788888888888888888765433222 21 1 1223445555544433333 3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVG 250 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 250 (256)
...++...|..++..+...... +..+|+.||.+|+.|+.+..+. .+.-+|+|.+|+++|+++.+
T Consensus 61 ~i~~l~~~L~~l~~ll~~~~~~-n~~ls~DDi~lFp~LR~Lt~vk---gi~~P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 61 YIAALNALLEELDPLILSSEAV-NGQLSTDDIILFPILRNLTLVK---GLVFPPKVKAYLERMSALTK 124 (128)
T ss_pred HHHHHHHHHHHHHHHHcCcccc-CCcCCHHHHHHHHHHhhhhhhc---CCCCCHHHHHHHHHHHHHhC
Confidence 4455666666666666444444 5589999999999999997655 56556899999999998865
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.61 E-value=3.4e-07 Score=60.63 Aligned_cols=69 Identities=20% Similarity=0.397 Sum_probs=58.2
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCCcccEEEECCeEeeccHHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~~ 98 (256)
+++|+.+.||+|.+++-+|+.+|++|+.+.++.... .++. .++...+|++..+|..+.+...+..+-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 589999999999999999999999999999975432 2333 56789999999999999998888877654
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.57 E-value=3e-07 Score=59.72 Aligned_cols=55 Identities=20% Similarity=0.530 Sum_probs=45.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHhhcCCCcccEEEECCe
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIKWSDYKKVPILKVDGE 84 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~~~p~~~vP~L~~~g~ 84 (256)
+++|+.+.||+|.+++-+|..+||+|+.++++-... ..++..+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 589999999999999999999999999999874332 2344567889999999664
No 118
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.57 E-value=4.3e-07 Score=58.77 Aligned_cols=61 Identities=31% Similarity=0.709 Sum_probs=50.6
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCCcccEEEECCeEeecc
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYKKVPILKVDGEQMVDS 89 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~~vP~L~~~g~~l~eS 89 (256)
++++|+.++||+|.+++.+|.++|++|..+.++.... .++. .++.+.+|+|+++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 3799999999999999999999999999999875322 2343 67899999999988777653
No 119
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.57 E-value=9.6e-08 Score=66.08 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccC-cccCCcHHHHHHHH
Q 040684 181 TDERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRD-MVEHTRIGDWYTRM 245 (256)
Q Consensus 181 ~~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~-~~~~p~L~~w~~r~ 245 (256)
+.....+.+.+..+++.|++++| +++|+|||.+++.+.+......... ...+|+|.+|++||
T Consensus 36 ~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 36 ERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 35677888889999999988888 8999999999999988864322223 46789999999986
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.56 E-value=5.7e-07 Score=62.21 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=57.3
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-h----hHh-hcCCCcccEEEECCeEeeccHHHHHHH
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-K----EIK-WSDYKKVPILKVDGEQMVDSSDIMDKL 96 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~----~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL 96 (256)
.++++|..++||||.+++-+|...|++|+.++++.... . .+. .++..+||.+..+|..+.+...+....
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 45999999999999999999999999999999984422 1 122 568899999999999999887777653
No 121
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=98.56 E-value=2.1e-07 Score=67.21 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhHhHHhhhhhhhccchhHhhhhhhhhccCCCcchHHHHHHHhhhHHHHHHHHHHHhhc-------CCch
Q 040684 110 DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSKKLKKRH-------NITD 182 (256)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 182 (256)
+++.+|++.+...+.+.+.|++.....+++..-. +..++..+|.+... ...+
T Consensus 1 p~I~~W~~~v~~~~~~L~~PR~~~~~lpEFat~~---------------------Ar~yf~~kKe~~~g~F~~~l~~t~~ 59 (132)
T PF04399_consen 1 PEIEAWLKRVSPYLNKLLYPRWAQAPLPEFATPS---------------------ARAYFREKKEKSIGSFEELLAKTPE 59 (132)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHCCTT-GGG-SHH---------------------HHHHHHCCCCCCHTHHHHHHHCHHH
T ss_pred ChHHHHHHHHHHHHhhhhhccccCCCCcccCCHH---------------------HHHHHHHhhccccCCHHHHHHcCHH
Confidence 4577888888888888888887655433322111 11122221111100 1225
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 183 ERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 183 ~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
...++...|..++..+.......| ++|+.||.+|+.|+.+..+. .+.-+|+|.+|+++|+++.+.
T Consensus 60 ~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivk---gi~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 60 LIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVK---GIQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCT---TS---HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhcc---CCcCCHHHHHHHHHHHHHcCC
Confidence 567777888888887775556666 99999999999999997765 565568999999999998763
No 122
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.56 E-value=2.9e-07 Score=57.53 Aligned_cols=57 Identities=40% Similarity=0.780 Sum_probs=48.6
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcc--hhhHh-hcCCCcccEEEECCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKEIK-WSDYKKVPILKVDGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~~~-~~p~~~vP~L~~~g~~l 86 (256)
+++|+.++||+|.+++-+|+..|++|+.++++... .++++ ..+..++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 58999999999999999999999999999998653 23344 56899999999998764
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.48 E-value=1.2e-06 Score=61.57 Aligned_cols=67 Identities=18% Similarity=0.478 Sum_probs=55.9
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCC---CeEEEEcCCcc-h----hhHh-hcCCCcccEEEECCeEeeccHHHHH
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRI---PYKVVEVNPIS-K----KEIK-WSDYKKVPILKVDGEQMVDSSDIMD 94 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi---~y~~~~v~~~~-~----~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~ 94 (256)
.++++|..++||||.+++-+|...|+ +|+.++++-.. . .++. .++..+||.+.++|..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 46999999999999999999999999 78899987421 1 2343 6788899999999999988877766
No 124
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.47 E-value=1.2e-06 Score=58.30 Aligned_cols=71 Identities=21% Similarity=0.419 Sum_probs=60.1
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-h----hH-hhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-K----EI-KWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~----~~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
++++|+.++||+|.+++-+|...+++|+.++++.... . .+ +.++..++|++..+|..+.++..|.++..+-
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g 77 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSG 77 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcC
Confidence 4799999999999999999999999999998875432 1 23 3578889999999999999999999987653
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.46 E-value=1.5e-06 Score=59.88 Aligned_cols=70 Identities=29% Similarity=0.454 Sum_probs=56.7
Q ss_pred CceEEEec-----CCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 28 SDVVLYQY-----EACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 28 ~~~~Ly~~-----~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
.++.+|.. +.||||.+++-+|..+||+|+.++++-... .+++ .++..+||.+..+|..+.+...+.....
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence 35899976 789999999999999999999998863221 2343 6788899999999999988888777543
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.46 E-value=1.4e-06 Score=57.07 Aligned_cols=68 Identities=21% Similarity=0.432 Sum_probs=51.9
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhH-hhc-CCCcccEEEE-CCeEeecc--HHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEI-KWS-DYKKVPILKV-DGEQMVDS--SDIMDKL 96 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~-~~~-p~~~vP~L~~-~g~~l~eS--~~I~~yL 96 (256)
+++||+.++||+|.+++.+|...|++|+.+.++-... ..+ .++ +...+|+++. +|..+.++ ..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 4799999999999999999999999999988764332 123 355 8899999976 67776644 4455444
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.31 E-value=6.6e-06 Score=55.86 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=56.5
Q ss_pred ceEEEec-----CCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 29 DVVLYQY-----EACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 29 ~~~Ly~~-----~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++++|.. ++||||.+++-+|...|++|+.++++.... .++. .++..++|++..+|..+.+...+.....
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 4888876 699999999999999999999999864321 2333 6788899999999999999888887543
No 128
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.20 E-value=1.1e-05 Score=53.85 Aligned_cols=69 Identities=26% Similarity=0.552 Sum_probs=57.1
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCC--eEEEEcCCcch-h----hHh-hcCCCcccEEEECCeEeeccHHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIP--YKVVEVNPISK-K----EIK-WSDYKKVPILKVDGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~--y~~~~v~~~~~-~----~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~~ 98 (256)
+++|+-++||+|.+++-+|...+++ |+.++++.... . .+. ..+..++|++..+|..+.++..++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 88888875422 1 133 46778999999999999999999888764
No 129
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.02 E-value=2.4e-05 Score=50.51 Aligned_cols=55 Identities=29% Similarity=0.371 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHhCCCC---eEEEEcCCcchhhHhhcCCCcccEEEE-CCeEeeccHHHHHHH
Q 040684 37 ACPFCNKVKAFLDYYRIP---YKVVEVNPISKKEIKWSDYKKVPILKV-DGEQMVDSSDIMDKL 96 (256)
Q Consensus 37 ~sp~~~kvr~~L~~~gi~---y~~~~v~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yL 96 (256)
.+|-|..+.++|+..+.+ |+.+..+... .+|.|++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-----~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-----LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-----cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 479999999999999999 8888876322 379999999999 999999999999998
No 130
>PRK10824 glutaredoxin-4; Provisional
Probab=97.97 E-value=7.5e-05 Score=52.77 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=56.2
Q ss_pred ceEEEec-----CCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 29 DVVLYQY-----EACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 29 ~~~Ly~~-----~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
++.+|.. +.||||.++.-+|...|++|..++++-... ..+. .++..+||-+..+|..|.+...+.....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 4888887 589999999999999999999988863321 2344 6789999999999999999887777543
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.88 E-value=0.00013 Score=54.00 Aligned_cols=69 Identities=25% Similarity=0.409 Sum_probs=56.1
Q ss_pred ceEEEecC------CCcchHHHHHHHHhCCCCeEEEEcCCcc--hhhHh-hcC----CCcccEEEECCeEeeccHHHHHH
Q 040684 29 DVVLYQYE------ACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKEIK-WSD----YKKVPILKVDGEQMVDSSDIMDK 95 (256)
Q Consensus 29 ~~~Ly~~~------~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~~~-~~p----~~~vP~L~~~g~~l~eS~~I~~y 95 (256)
+++||.-. ++|+|.+++.+|+.++|+|+.++++... .++++ ..+ ..+||.+..+|..|.+...+.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 37899988 8999999999999999999999998543 23444 333 48999999999999998888775
Q ss_pred HH
Q 040684 96 LF 97 (256)
Q Consensus 96 L~ 97 (256)
-+
T Consensus 81 ~e 82 (147)
T cd03031 81 NE 82 (147)
T ss_pred HH
Confidence 43
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.88 E-value=6.8e-05 Score=65.29 Aligned_cols=68 Identities=22% Similarity=0.479 Sum_probs=55.6
Q ss_pred CCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch-hhH-h---------hcCCCcccEEEECCeEeeccHHHHH
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK-KEI-K---------WSDYKKVPILKVDGEQMVDSSDIMD 94 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~-~~~-~---------~~p~~~vP~L~~~g~~l~eS~~I~~ 94 (256)
|.++++|+.+.||+|.++.-+|..+||+|+.++++-... .++ . .++..+||++..+|..+.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 678999999999999999999999999999999983321 111 1 1467899999999999888877765
No 133
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00023 Score=49.31 Aligned_cols=70 Identities=27% Similarity=0.503 Sum_probs=58.6
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh-h----H-hhcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK-E----I-KWSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~-~----~-~~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
.++.+|.-.+||+|.+++-+|...++++..+++|-...+ + + ++....+||.+..+|..+.....++.+-.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 448999999999999999999999999999999855332 2 2 25778899999999999999888877643
No 134
>PTZ00062 glutaredoxin; Provisional
Probab=97.55 E-value=0.00067 Score=53.12 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=55.7
Q ss_pred CceEEEec-----CCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hcCCCcccEEEECCeEeeccHHHHHHH
Q 040684 28 SDVVLYQY-----EACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WSDYKKVPILKVDGEQMVDSSDIMDKL 96 (256)
Q Consensus 28 ~~~~Ly~~-----~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL 96 (256)
.++.+|.. +.||||.++.-+|...||+|...+++-... +.++ .++..++|.+..+|..|.+...+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 34899977 689999999999999999999998873321 2343 678889999999999998887777643
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.30 E-value=0.0014 Score=41.42 Aligned_cols=57 Identities=12% Similarity=0.382 Sum_probs=42.4
Q ss_pred ceEEEecCCCcchHHHHHHHHhC-----CCCeEEEEcCCcchhhHh-hcCCCcccEEEECCeEee
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYY-----RIPYKVVEVNPISKKEIK-WSDYKKVPILKVDGEQMV 87 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~~g~~l~ 87 (256)
++++|+.++||+|.+++-+|++. ++++..++++-. +++. ..+...+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998764 577777766522 2322 345668999999887664
No 136
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0021 Score=40.82 Aligned_cols=61 Identities=26% Similarity=0.531 Sum_probs=48.9
Q ss_pred CCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchh---------------hHhhcCCCcccEEEE-CCeEee
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKK---------------EIKWSDYKKVPILKV-DGEQMV 87 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~---------------~~~~~p~~~vP~L~~-~g~~l~ 87 (256)
|++.+||+...||-|....-.|+-.++.|+.+++.-.... +.+.+++-.+|+|.. ||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 6777999999999999999999999999999998532211 244678889999886 666655
No 137
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.96 E-value=0.0038 Score=43.54 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhhcc
Q 040684 182 DERVSLYEAAEIWVDALNG-RHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSVGS 251 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~-~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 251 (256)
.......+.+...+..|.. ++||+| +.|+||..+.+++.++...+ ..-++++..|.++.-++|..
T Consensus 43 ~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~dlA~ml~Rl~~~g----d~vP~~l~~Ya~~qwqrpsV 108 (117)
T PF14834_consen 43 AAQAAAQKLIAVAERLLADGGPNLFG-EWSIADADLALMLNRLVTYG----DPVPERLADYAERQWQRPSV 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHHHHHHHHHHHHTTT--------HHHHHHHHHHHT-HHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccc-cchHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHCCHHH
Confidence 3445555555566666664 689999 99999999999999996543 22345778888877777653
No 138
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.93 E-value=0.0011 Score=46.73 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=30.4
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
++||+.+.||+|.+++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999999875
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.88 E-value=0.0014 Score=45.69 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=30.3
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.||+|.+++-+|+.+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999985
No 140
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.86 E-value=0.0017 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=30.7
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|++|.+++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999999975
No 141
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.74 E-value=0.0027 Score=45.14 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=30.6
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|+.|.+++-+|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999999985
No 142
>PRK10026 arsenate reductase; Provisional
Probab=96.57 E-value=0.0038 Score=45.82 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=32.3
Q ss_pred CCceEEEecCCCcchHHHHHHHHhCCCCeEEEEc
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEV 60 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v 60 (256)
|+.+++|+++.|.-|.+++-+|+++|++|+.+++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 6789999999999999999999999999999986
No 143
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.48 E-value=0.004 Score=44.38 Aligned_cols=32 Identities=22% Similarity=0.649 Sum_probs=30.2
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.||+|.+++-+|+.+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999999875
No 144
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.44 E-value=0.029 Score=36.54 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=42.7
Q ss_pred ceEEEecCCCcchHHH----HHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEee
Q 040684 29 DVVLYQYEACPFCNKV----KAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMV 87 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kv----r~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~ 87 (256)
++.+|. ++||.|..+ .-++.+.|+.++.+.++- ..+........+|+|..||..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~--~~~a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD--MNEILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHcCCCcCCEEEECCEEEE
Confidence 367777 999999999 667788899998888872 22233357889999999886654
No 145
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.43 E-value=0.023 Score=37.56 Aligned_cols=55 Identities=25% Similarity=0.544 Sum_probs=38.3
Q ss_pred ceEEEecCCCcchHHHHHHHHhC--CCCeEEEEcCCcchhhHhhcCCCcccEEEECC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYY--RIPYKVVEVNPISKKEIKWSDYKKVPILKVDG 83 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~--gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g 83 (256)
+++||+-++|+.|..+.-.|... ..+++...+|....+++...=...||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcC
Confidence 47999999999999999999854 34455555554444455533235899999977
No 146
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.41 E-value=0.0056 Score=44.58 Aligned_cols=32 Identities=25% Similarity=0.642 Sum_probs=30.7
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|+.|.+++-+|..+||+|+.+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 78999999999999999999999999999975
No 147
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.40 E-value=0.0058 Score=44.45 Aligned_cols=32 Identities=38% Similarity=0.673 Sum_probs=30.5
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|+.|.+++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 78999999999999999999999999999875
No 148
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.018 Score=39.04 Aligned_cols=68 Identities=22% Similarity=0.403 Sum_probs=53.7
Q ss_pred eEEEe-----cCCCcchHHHHHHHHhCC-CCeEEEEcCCc--chhhHh-hcCCCcccEEEECCeEeeccHHHHHHHH
Q 040684 30 VVLYQ-----YEACPFCNKVKAFLDYYR-IPYKVVEVNPI--SKKEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 30 ~~Ly~-----~~~sp~~~kvr~~L~~~g-i~y~~~~v~~~--~~~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
+.||. +|.|+|+.++--+|.+.| ++|..+.|--. -++.++ .+...+.|=|-.+|..+.+|.-|.+..+
T Consensus 17 VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 17 VVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred eEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHH
Confidence 88886 577999999999999999 77777776422 223455 6788999999999999999887777654
No 149
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.36 E-value=0.0058 Score=43.21 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=30.8
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
.++||+.+.|+.|.+++-+|+++|++|+.+++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 379999999999999999999999999999864
No 150
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.24 E-value=0.0067 Score=42.29 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=30.2
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|+.|.+++-+|.++|++|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999875
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.91 E-value=0.095 Score=35.51 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred eEEEecCCC------cchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hc----CCCcccEEEECCeEeeccHHHHHH
Q 040684 30 VVLYQYEAC------PFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WS----DYKKVPILKVDGEQMVDSSDIMDK 95 (256)
Q Consensus 30 ~~Ly~~~~s------p~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~----p~~~vP~L~~~g~~l~eS~~I~~y 95 (256)
+++|.-..+ -.|+.++.+|..+||+|+.++++.... .++. .. +..++|-+..+|..+.+...+...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 566766554 357889999999999999999985432 2333 32 458999999999999988776663
No 152
>PRK10853 putative reductase; Provisional
Probab=95.39 E-value=0.025 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=30.3
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|.-|.+++-+|+++|++|+.+++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999999864
No 153
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.34 E-value=0.03 Score=40.39 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
.+++|+++.|.-|.+++-+|+++||+|+.+++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 479999999999999999999999999999864
No 154
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.24 E-value=0.11 Score=33.90 Aligned_cols=56 Identities=18% Similarity=0.400 Sum_probs=38.0
Q ss_pred ceEEEecCCCcchHHHHHHHHh----CCCCeEEEEcCCcchhh-HhhcCCCcccEEEECCe
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY----YRIPYKVVEVNPISKKE-IKWSDYKKVPILKVDGE 84 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~----~gi~y~~~~v~~~~~~~-~~~~p~~~vP~L~~~g~ 84 (256)
++++|+.++||+|..+.-.|+. .+..+....+|.....+ ....+...+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 4789999999999999888753 34334445555333323 23456678999998775
No 155
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.034 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=30.6
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
.+++|+.+.|.-|.+++-+|+.+||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 389999999999999999999999999998764
No 156
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.20 E-value=0.26 Score=31.91 Aligned_cols=58 Identities=19% Similarity=0.457 Sum_probs=40.2
Q ss_pred ceEEEecCCCcchHHHHHHH----HhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeecc
Q 040684 29 DVVLYQYEACPFCNKVKAFL----DYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDS 89 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L----~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 89 (256)
++++ ..+.||+|..+.-++ ...|+.++.+.+. ..+++...+...+|+|+.||......
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~--~~~~~~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE--DFEEIEKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT--THHHHHHTT-SSSSEEEETTEEEEES
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc--CHHHHHHcCCCCCCEEEECCEEEEEe
Confidence 3566 566699999776644 5668888777763 33345567888999999999765543
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.09 E-value=0.13 Score=34.58 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=41.2
Q ss_pred ceEEEecCCCcchHHHHHHHHhC-----CCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEee
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYY-----RIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMV 87 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~ 87 (256)
++.+|..++|++|..+.-++... ++.+..+.++-. .......+-..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-HHHHHHcCCccCCEEEECCEEEE
Confidence 38899999999999998877544 677777776622 11222456667999999886554
No 158
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.81 E-value=0.046 Score=38.71 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=29.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|.-|.+++-+|+++|++|+.+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998864
No 159
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.79 E-value=0.046 Score=38.57 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=29.8
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
+++|+.+.|.-|.+++-+|+++|++|+.+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998864
No 160
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.06 E-value=0.2 Score=29.96 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=39.0
Q ss_pred eEEEecCCCcchHHHHHHHH-----hCCCCeEEEEcCCcchhhH--hhcCCCcccEEEE
Q 040684 30 VVLYQYEACPFCNKVKAFLD-----YYRIPYKVVEVNPISKKEI--KWSDYKKVPILKV 81 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~-----~~gi~y~~~~v~~~~~~~~--~~~p~~~vP~L~~ 81 (256)
+++|+...|++|.+.+..+. ..++.+..+.++....... ...+...+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46788889999999999999 5677777777764433221 3567889999886
No 161
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.056 Score=47.73 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccC-cccCCcHHHHHH
Q 040684 186 SLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRD-MVEHTRIGDWYT 243 (256)
Q Consensus 186 ~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~-~~~~p~L~~w~~ 243 (256)
++...+..+...|.-..||+|.++|+||+++|+.+..-........ -..+-++.+|++
T Consensus 92 ~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 92 EISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 3444566666677777899999999999999999987432221111 224567888877
No 162
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.39 Score=37.80 Aligned_cols=71 Identities=21% Similarity=0.369 Sum_probs=56.3
Q ss_pred CceEEEe-----cCCCcchHHHHHHHHhCCCCeEEEEcCCcc--hhhHh-hcCCCcccEEEECCeEeeccHHHHHHHHH
Q 040684 28 SDVVLYQ-----YEACPFCNKVKAFLDYYRIPYKVVEVNPIS--KKEIK-WSDYKKVPILKVDGEQMVDSSDIMDKLFQ 98 (256)
Q Consensus 28 ~~~~Ly~-----~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~--~~~~~-~~p~~~vP~L~~~g~~l~eS~~I~~yL~~ 98 (256)
.++.||. .|.|+++.++--.|...|++|...+|--.. ++.++ .+...+.|=|-.+|..+.+...|...+.+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhc
Confidence 3478886 467999999999999999999998875332 23355 68899999999999999888777766653
No 163
>PHA02125 thioredoxin-like protein
Probab=92.82 E-value=0.38 Score=31.01 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=35.7
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV 81 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~ 81 (256)
+++|+.++|+.|..+.-.|+. +.+....++.....++. ...-..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEEC
Confidence 688999999999999888764 55666666643333433 456678999983
No 164
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.73 E-value=0.61 Score=32.50 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHhC---CCCeEEEEcCCcch-hh-Hh-h-cCCCcccEEEE-CCe-------------EeeccHHHHHH
Q 040684 37 ACPFCNKVKAFLDYY---RIPYKVVEVNPISK-KE-IK-W-SDYKKVPILKV-DGE-------------QMVDSSDIMDK 95 (256)
Q Consensus 37 ~sp~~~kvr~~L~~~---gi~y~~~~v~~~~~-~~-~~-~-~p~~~vP~L~~-~g~-------------~l~eS~~I~~y 95 (256)
.||.|..+.=+|... .-..+.+.|++... .+ +. + -....+|+|+. +|. .|.|+..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 488888888777532 22234444554332 22 22 2 24678999997 332 69999999999
Q ss_pred HHHhcCCC
Q 040684 96 LFQRIHLD 103 (256)
Q Consensus 96 L~~~~~~~ 103 (256)
|.++|+-+
T Consensus 103 La~r~g~p 110 (112)
T PF11287_consen 103 LAERHGFP 110 (112)
T ss_pred HHHHcCCC
Confidence 99999754
No 165
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=89.80 E-value=0.53 Score=35.78 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCC---CCcCCCC-CChhHHHHHhhhhhhhc
Q 040684 188 YEAAEIWVDALNGR---HYLGGSK-PNLADLAVFGVLRPIRH 225 (256)
Q Consensus 188 ~~~l~~~~~~L~~~---~fl~Gd~-~T~ADi~l~~~l~~~~~ 225 (256)
.+.+..+++.|++. .|++|+. +|-.||.+++.|.-+..
T Consensus 114 ~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~ 155 (168)
T PF11801_consen 114 MECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLV 155 (168)
T ss_pred HHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 34456666677777 8999987 99999999999998753
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.38 E-value=0.59 Score=32.70 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=23.5
Q ss_pred EecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 33 YQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 33 y~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
|+.+.|.-|++++-+|+++|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999999875
No 167
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=87.35 E-value=5.4 Score=27.39 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=40.2
Q ss_pred eEEEecCCC------cchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-hc---------CCCcccEEEECCeEeeccHH
Q 040684 30 VVLYQYEAC------PFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-WS---------DYKKVPILKVDGEQMVDSSD 91 (256)
Q Consensus 30 ~~Ly~~~~s------p~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~~---------p~~~vP~L~~~g~~l~eS~~ 91 (256)
+++|....+ -.++++..+|+.++|+|+.+++..... ..++ .. +....|-|..+|..+.+-..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 677776655 357899999999999999999985432 2233 22 23345678888887777665
Q ss_pred HHHH
Q 040684 92 IMDK 95 (256)
Q Consensus 92 I~~y 95 (256)
+.+.
T Consensus 83 f~ea 86 (99)
T PF04908_consen 83 FEEA 86 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 168
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.79 E-value=9.8 Score=27.76 Aligned_cols=76 Identities=14% Similarity=0.285 Sum_probs=55.7
Q ss_pred CCCCceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcch--hhHhhc-CCCcccEEEECCeEeec---cHHHHHHHHH
Q 040684 25 QKFSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISK--KEIKWS-DYKKVPILKVDGEQMVD---SSDIMDKLFQ 98 (256)
Q Consensus 25 ~~m~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~~~-p~~~vP~L~~~g~~l~e---S~~I~~yL~~ 98 (256)
+.-.+++.|..|.|++|....-.|+.+|+..+.+..+.... ..+.+. .....=+.+++|..+-. ..+|.+.|++
T Consensus 23 a~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 23 AQATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred cceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 33456999999999999999999999999999888764432 223322 24555677788866543 4789999988
Q ss_pred hc
Q 040684 99 RI 100 (256)
Q Consensus 99 ~~ 100 (256)
..
T Consensus 103 ~p 104 (149)
T COG3019 103 KP 104 (149)
T ss_pred CC
Confidence 86
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=80.24 E-value=7.2 Score=35.72 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=42.3
Q ss_pred ceEEEecCCCcchHHHHHHH----HhC-CCCeEEEEcCCcchhhHh-hcCCCcccEEEECCeEee
Q 040684 29 DVVLYQYEACPFCNKVKAFL----DYY-RIPYKVVEVNPISKKEIK-WSDYKKVPILKVDGEQMV 87 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L----~~~-gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~~g~~l~ 87 (256)
++++|..+.||+|-.+.-++ .+. +|..+.+++.... ++. ......||.++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~--~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP--DLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH--HHHHhCCceecCEEEECCEEEE
Confidence 38899999999999876644 344 7888888877442 333 457788999999886543
No 170
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=79.80 E-value=13 Score=24.92 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=33.5
Q ss_pred eEEEecCCCcchHHHHHHHHh----CCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY----YRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~----~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l 86 (256)
+.+|+.++|+.|....-.+.. .+-.+....+|....+++. ...-..+|++.. +|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 567777899999998877754 1112333444433333322 334578898775 66543
No 171
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=79.56 E-value=1.2 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCcccEEEE--CCeEeeccHHHHHHHHHhcCC
Q 040684 73 YKKVPILKV--DGEQMVDSSDIMDKLFQRIHL 102 (256)
Q Consensus 73 ~~~vP~L~~--~g~~l~eS~~I~~yL~~~~~~ 102 (256)
...-|-|.+ +|+.+.|+.||++|+..-|.+
T Consensus 33 d~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 33 DESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp S--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 334488876 789999999999999888753
No 172
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=78.74 E-value=14 Score=23.57 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=36.4
Q ss_pred eEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcchhhHhhcCCCcccEEEE--CCe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPISKKEIKWSDYKKVPILKV--DGE 84 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~--~g~ 84 (256)
+..++.++|+.|....-.+.. .++.+-.+.++.. ..-........+|++.. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-PELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-hhHHHhcCcccccEEEEEECCE
Confidence 677788899999999888876 6777666665531 11122334567898775 564
No 173
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=76.95 E-value=2.8 Score=33.26 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccccccCcccCCcHHHHHHHHHhhh
Q 040684 188 YEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRMESSV 249 (256)
Q Consensus 188 ~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~~~p 249 (256)
.+.++.++..|.++.|.-|..++-+|+.+|..+..- ..-..+++..+|++++.+.-
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e------p~s~~~v~~~~w~~~l~a~~ 65 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE------PQSARLVNAERWYSKLEALL 65 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC------cchhhhhHHHHHHHHHHHHH
Confidence 455777888999999999999999999998877532 12234567788888776653
No 174
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=76.85 E-value=19 Score=23.92 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=41.1
Q ss_pred eEEEecCCCcchHHHHHHHH-----hC-CCCeEEEEcCCcchhhH-hhcCCCcccEEEE--CCeEe------eccHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLD-----YY-RIPYKVVEVNPISKKEI-KWSDYKKVPILKV--DGEQM------VDSSDIMD 94 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~-----~~-gi~y~~~~v~~~~~~~~-~~~p~~~vP~L~~--~g~~l------~eS~~I~~ 94 (256)
+..++.++|+.|....-.+. .. ++.+-.++.+ ....+ ..-.-..+|++.. +|..+ .+...|.+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 67777789999999885552 33 3444444444 22232 2345778998885 66443 24567777
Q ss_pred HHHH
Q 040684 95 KLFQ 98 (256)
Q Consensus 95 yL~~ 98 (256)
+|.+
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
No 175
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=75.62 E-value=15 Score=26.10 Aligned_cols=56 Identities=18% Similarity=0.428 Sum_probs=35.3
Q ss_pred eEEEecCCCcchHHHHHHH----HhCCCCeEEEEcCCcc-----h-h---hH-hh----cCCCcccEEEE--CCeE
Q 040684 30 VVLYQYEACPFCNKVKAFL----DYYRIPYKVVEVNPIS-----K-K---EI-KW----SDYKKVPILKV--DGEQ 85 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L----~~~gi~y~~~~v~~~~-----~-~---~~-~~----~p~~~vP~L~~--~g~~ 85 (256)
+..++.++||+|+...=.| +..++++..+.++... . . ++ .. .....+|+++. +|..
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 6677889999999965444 4556777777776321 1 1 11 11 23456999986 7744
No 176
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=9.6 Score=31.17 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=51.1
Q ss_pred ceEEEecCCC------cchHHHHHHHHhCCCCeEEEEcCCcch--hhHh-h----cCCCcccEEEECCeEeeccHHHHHH
Q 040684 29 DVVLYQYEAC------PFCNKVKAFLDYYRIPYKVVEVNPISK--KEIK-W----SDYKKVPILKVDGEQMVDSSDIMDK 95 (256)
Q Consensus 29 ~~~Ly~~~~s------p~~~kvr~~L~~~gi~y~~~~v~~~~~--~~~~-~----~p~~~vP~L~~~g~~l~eS~~I~~y 95 (256)
.+++|.=... =-|..||.+|+-.+|.|..++|.+... .+++ + ...-.+|.+..+|..|.....|++.
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 4666653321 357899999999999999999997653 3444 2 2467899888899999998888775
Q ss_pred HH
Q 040684 96 LF 97 (256)
Q Consensus 96 L~ 97 (256)
-+
T Consensus 212 nE 213 (281)
T KOG2824|consen 212 NE 213 (281)
T ss_pred hh
Confidence 43
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=71.43 E-value=4.7 Score=36.56 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=38.6
Q ss_pred ceEEEecCCCcchHHHHHHHHhC-----CCCeEEEEcCCcchhhHh-hcCCCcccEEEECCeEeec
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYY-----RIPYKVVEVNPISKKEIK-WSDYKKVPILKVDGEQMVD 88 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~~g~~l~e 88 (256)
++++|..+.||||-.+..+++.. +|..+.++.... +++. ......||.+..+|..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~--~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF--QDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC--HHHHHhcCCcccCEEEECCcEEEe
Confidence 48899999999999987777543 444444433321 2332 3466799999998765554
No 178
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=71.41 E-value=32 Score=23.99 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=35.9
Q ss_pred eEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEeec
Q 040684 30 VVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQMVD 88 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l~e 88 (256)
+..++.++|+.|..+.-.|+. .++.+-.++++ ...++. -..-..+|++.. +|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~--~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE--KAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc--cCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 566677899999988776643 34544444443 323333 346778998885 7866553
No 179
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.55 E-value=23 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.338 Sum_probs=32.8
Q ss_pred eEEEecCCCcchHHHHHHHHhC-----CCCeEEEEcCCcchhhHh-hcCCCcccEEEE
Q 040684 30 VVLYQYEACPFCNKVKAFLDYY-----RIPYKVVEVNPISKKEIK-WSDYKKVPILKV 81 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~ 81 (256)
+++|+-++||+|..+..+++.. +|.+. .+|....+++. ...-..+|++..
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~--~vD~~~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGE--MIEANENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEE--EEeCCCCHHHHHHhCCccCCEEEE
Confidence 6778899999999988877643 23333 34433333333 456678999987
No 180
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=67.90 E-value=6.5 Score=35.64 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=43.5
Q ss_pred ceEEEecCCCcchHHHHHHHHhC-----CCCeEEEEcCCcchhhHh-hcCCCcccEEEECCeEeec----cHHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYY-----RIPYKVVEVNPISKKEIK-WSDYKKVPILKVDGEQMVD----SSDIMDKLFQ 98 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~~g~~l~e----S~~I~~yL~~ 98 (256)
++++|..+.||||-.+..+++.. +|..+.++.... +++. ......||.+..+|..+.+ -..|++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~--~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF--QDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC--HhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 38999999999999987776543 444444443321 2332 4467799999998765543 2345555544
Q ss_pred h
Q 040684 99 R 99 (256)
Q Consensus 99 ~ 99 (256)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 181
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=67.23 E-value=18 Score=25.25 Aligned_cols=50 Identities=20% Similarity=0.469 Sum_probs=31.4
Q ss_pred eEEE-ecCCCcchHHHHHHHHhCC-----CCeEEEEcCCcchhhHh-hcCCCcccEEEE
Q 040684 30 VVLY-QYEACPFCNKVKAFLDYYR-----IPYKVVEVNPISKKEIK-WSDYKKVPILKV 81 (256)
Q Consensus 30 ~~Ly-~~~~sp~~~kvr~~L~~~g-----i~y~~~~v~~~~~~~~~-~~p~~~vP~L~~ 81 (256)
++++ +-++||+|..++-+|+... +.+..++++ ..+++. .-.-..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEE
Confidence 4555 5579999998877776433 344444444 223333 456788999886
No 182
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=61.95 E-value=50 Score=22.77 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=32.0
Q ss_pred CceEEEecCCCcchHHHHHHH-----HhCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeE
Q 040684 28 SDVVLYQYEACPFCNKVKAFL-----DYYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQ 85 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L-----~~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~ 85 (256)
+-+..++.++|+.|....-.+ ++.+.......++......+. ..+-..+|++.. +|..
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEE
Confidence 446777888999997665333 222222333334432222222 346688998874 6644
No 183
>PTZ00051 thioredoxin; Provisional
Probab=58.80 E-value=50 Score=21.79 Aligned_cols=55 Identities=22% Similarity=0.465 Sum_probs=32.5
Q ss_pred eEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcchhh-HhhcCCCcccEEEE--CCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPISKKE-IKWSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~~~~-~~~~p~~~vP~L~~--~g~~l 86 (256)
+..++.++|+.|+...-.++. .++.+-.+.++ .... ...-.-..+|+++. +|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 567777899999988666644 34444444443 2222 22345578898775 66443
No 184
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=58.39 E-value=50 Score=21.69 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=34.8
Q ss_pred eEEEecCCCcchHHHHHHHHhC----CCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDYY----RIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l 86 (256)
+..++.++|+.|++..-.|+.. +..+....++.....++. --....+|++.. +|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 5677788999999887766531 334555556544333332 234566998775 66543
No 185
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=52.57 E-value=65 Score=25.33 Aligned_cols=55 Identities=18% Similarity=0.514 Sum_probs=34.8
Q ss_pred eEEEec---CCCcchHHHHHHHHhC-----CCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCe
Q 040684 30 VVLYQY---EACPFCNKVKAFLDYY-----RIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGE 84 (256)
Q Consensus 30 ~~Ly~~---~~sp~~~kvr~~L~~~-----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~ 84 (256)
+.+|.. ++||.|..+.=.+++. ++.+..+.++.....++. ...-..+|+|.. +|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence 666766 7899999887777543 344445555543333333 456788998886 553
No 186
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=51.34 E-value=30 Score=24.29 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=33.5
Q ss_pred ceEEEecCCCcchHHHHHHHHh------CCCCeEEEEcCCcchhh-HhhcCCC-cccEEEE---CCeEee
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY------YRIPYKVVEVNPISKKE-IKWSDYK-KVPILKV---DGEQMV 87 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~------~gi~y~~~~v~~~~~~~-~~~~p~~-~vP~L~~---~g~~l~ 87 (256)
-+..++-++|+.|....-.+.. .+..|..+.++...... ...+..+ .+|++.. +|..+.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 3566677889999988555544 23456556665332111 2233333 4998875 555543
No 187
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=47.39 E-value=75 Score=21.30 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=30.0
Q ss_pred CceEEEecCCCcchHHHHHHH--------HhCCCCeEEEEcCCcc----hhhHh-hcCCCcccEEEE
Q 040684 28 SDVVLYQYEACPFCNKVKAFL--------DYYRIPYKVVEVNPIS----KKEIK-WSDYKKVPILKV 81 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L--------~~~gi~y~~~~v~~~~----~~~~~-~~p~~~vP~L~~ 81 (256)
+-+..|+.++|++|....-.+ ...+ .+....++... ..++. ......+|++..
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 346677888999999876433 1232 34444444322 12222 345567898774
No 188
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=43.58 E-value=38 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=24.7
Q ss_pred hHHHHHhhhhhhhccccccCcccCCcHHHHHHHHH
Q 040684 212 ADLAVFGVLRPIRHLKSGRDMVEHTRIGDWYTRME 246 (256)
Q Consensus 212 ADi~l~~~l~~~~~~~~~~~~~~~p~L~~w~~r~~ 246 (256)
-|+..|+.+.++...+....-.+--++..|.+++.
T Consensus 42 ~DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 42 YDVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 49999999999864333222233468999999875
No 189
>PHA03075 glutaredoxin-like protein; Provisional
Probab=41.58 E-value=37 Score=23.96 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=45.6
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
..+.|++-|.|+-|.-+.-+|.+..=.|+...|+...= .+..|.+=+|..|+.. .=-..+.+||...
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf----FsK~g~v~~lg~d~~y-~lInn~~~~lgne 69 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF----FSKDGQVKVLGMDKGY-TLINNFFKHLGNE 69 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee----eccCCceEEEecccce-ehHHHHHHhhccc
Confidence 34899999999999999999999999999988763210 1346777777764321 1123455555433
No 190
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=40.31 E-value=1.1e+02 Score=21.27 Aligned_cols=18 Identities=33% Similarity=0.993 Sum_probs=13.9
Q ss_pred CceEEEecCCCcchHHHH
Q 040684 28 SDVVLYQYEACPFCNKVK 45 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr 45 (256)
+.+..++.++|++|.+..
T Consensus 16 ~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred cEEEEEeCCCCHHHHHHH
Confidence 346777788999999875
No 191
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=40.22 E-value=28 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=20.9
Q ss_pred ccEEE-ECCeEeeccHHHHHHHHHhcC
Q 040684 76 VPILK-VDGEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 76 vP~L~-~~g~~l~eS~~I~~yL~~~~~ 101 (256)
+|.+. .+|.++++|..|+++....+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 489999999999999987754
No 192
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=39.20 E-value=1.4e+02 Score=21.26 Aligned_cols=60 Identities=10% Similarity=0.288 Sum_probs=35.8
Q ss_pred eEEEecCCCcchHHHHH-HHH------hCCCCeEEEEcCCcchhhHh---------hcCCCcccEEEE---CCeEeecc
Q 040684 30 VVLYQYEACPFCNKVKA-FLD------YYRIPYKVVEVNPISKKEIK---------WSDYKKVPILKV---DGEQMVDS 89 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~-~L~------~~gi~y~~~~v~~~~~~~~~---------~~p~~~vP~L~~---~g~~l~eS 89 (256)
+..++..+|++|.+..- .+. ..+=.|..+.+|....+++. ....+.+|+++. +|..+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 44456678999998742 222 22335777777654332211 235678998885 67777665
No 193
>PRK09381 trxA thioredoxin; Provisional
Probab=35.63 E-value=1.4e+02 Score=20.13 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=32.4
Q ss_pred ceEEEecCCCcchHHHHHHHHh----CCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEe
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY----YRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~----~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l 86 (256)
-+..++.++||.|....-.++. .+-.+....++....+.+. .-+-..+|+++. +|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 3666677889999987655432 2112344444433222222 235678998875 67544
No 194
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=34.14 E-value=71 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=18.4
Q ss_pred ceEEEecCCCcchHHHHHHHHh
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY 50 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~ 50 (256)
.+.+|..+.||||.+..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4778888999999999888874
No 195
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=33.99 E-value=1.6e+02 Score=20.23 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=34.3
Q ss_pred eEEEecCCCcchHHHHHHHH-----hCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEeecc
Q 040684 30 VVLYQYEACPFCNKVKAFLD-----YYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQMVDS 89 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~-----~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l~eS 89 (256)
+..++.++|+.|..+.-.++ +.++.+-.+.++ .. .+. ...-..+|++.. +|..+...
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~--~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE--KA-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch--hh-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 56677789999997765554 334544444443 22 333 235568998885 77665443
No 196
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=33.75 E-value=2e+02 Score=21.37 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=31.6
Q ss_pred eEEEecCCCcchHHHHHHHH-----hCCCCeEEEEcCCcchhhH----hhc---CCCcccEEEE--CCeEee
Q 040684 30 VVLYQYEACPFCNKVKAFLD-----YYRIPYKVVEVNPISKKEI----KWS---DYKKVPILKV--DGEQMV 87 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~-----~~gi~y~~~~v~~~~~~~~----~~~---p~~~vP~L~~--~g~~l~ 87 (256)
+..|+.++|+.|....-.++ ..+-.++...+|....+++ .+. ....+|+++. +|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 66777788999987765443 2222234444443322222 221 1245898885 776654
No 197
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=33.65 E-value=1.5e+02 Score=19.88 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=30.9
Q ss_pred eEEEecCCCcchHHHHHHHHh----CC---CCeEEEEcCCcchhhHhhcCCCcccEEEE--CCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY----YR---IPYKVVEVNPISKKEIKWSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~----~g---i~y~~~~v~~~~~~~~~~~p~~~vP~L~~--~g~~l 86 (256)
+..|+.++|+.|....-.+.. .+ +.+-.+.++ .....+-..-..+|++.. +|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 566677889999977644432 12 223333344 222233445677887775 66543
No 198
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.04 E-value=42 Score=20.70 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=20.5
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
.++|......-+..++-+|+..||++....-.
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 36777777778999999999999999886544
No 199
>PTZ00102 disulphide isomerase; Provisional
Probab=33.04 E-value=2.7e+02 Score=24.67 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=43.4
Q ss_pred ceEEEecCCCcchHHHHHHH-------HhCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEe-----eccHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFL-------DYYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQM-----VDSSDIM 93 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L-------~~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l-----~eS~~I~ 93 (256)
-+..++.++|+.|.+..=.+ ...+-++....++.....++. ...-..+|++.. +|..+ .....|.
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l~ 131 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGIV 131 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHHH
Confidence 46777888999998764222 222334455555433322332 234456888764 44322 2567899
Q ss_pred HHHHHhcCCC
Q 040684 94 DKLFQRIHLD 103 (256)
Q Consensus 94 ~yL~~~~~~~ 103 (256)
+|+.+..+.+
T Consensus 132 ~~l~~~~~~~ 141 (477)
T PTZ00102 132 SWIKKLTGPA 141 (477)
T ss_pred HHHHHhhCCC
Confidence 9998886543
No 200
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.69 E-value=50 Score=21.42 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHhCCCCeEEEEcC
Q 040684 38 CPFCNKVKAFLDYYRIPYKVVEVN 61 (256)
Q Consensus 38 sp~~~kvr~~L~~~gi~y~~~~v~ 61 (256)
-+|++|+.-.|+..|++|+..+-.
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCC
Confidence 489999999999999999988743
No 201
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.56 E-value=1.1e+02 Score=24.20 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=47.8
Q ss_pred ceEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHh-hcCCCcccEEEECCeEee----ccHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIK-WSDYKKVPILKVDGEQMV----DSSDIMDKLF 97 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~~g~~l~----eS~~I~~yL~ 97 (256)
.+++|.+.+|.-|--..=.|+.+|+--...-++......+. .+.--.||.+..||..+. |...|-.-+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 37999999999999999999999987655555533333333 356677998888886543 5555555444
No 202
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=31.92 E-value=1.8e+02 Score=20.52 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.0
Q ss_pred eEEEecCCCcchHHHHHHHHh-----CC-CCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY-----YR-IPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~-----~g-i~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l 86 (256)
+.-++-++||-|....-.|+. .+ +.+-.++++ ..+++. ...-..+|++.. +|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD--~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID--EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC--CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 455677889999877655532 33 233334444 333443 345567998886 77554
No 203
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=31.53 E-value=71 Score=25.96 Aligned_cols=20 Identities=20% Similarity=0.596 Sum_probs=16.4
Q ss_pred eEEEecCCCcchHHHHHHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLD 49 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~ 49 (256)
+++|.-+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 67778889999999876654
No 204
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=3.2e+02 Score=22.96 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=49.7
Q ss_pred CCceEEEecCCCcchHHHHHHHH----hCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEeec------cHHHH
Q 040684 27 FSDVVLYQYEACPFCNKVKAFLD----YYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQMVD------SSDIM 93 (256)
Q Consensus 27 m~~~~Ly~~~~sp~~~kvr~~L~----~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l~e------S~~I~ 93 (256)
.|-+.+++.|+|+-|....=.|+ +.+=.|....|+....+.+. .-+-..+|+++. +|..+.+ -..|-
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr 123 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLR 123 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHH
Confidence 35567777788988888766664 44445666666655444443 356778898774 7765442 24788
Q ss_pred HHHHHhcCC
Q 040684 94 DKLFQRIHL 102 (256)
Q Consensus 94 ~yL~~~~~~ 102 (256)
+||++..+.
T Consensus 124 ~~ld~~~~~ 132 (304)
T COG3118 124 QFLDKVLPA 132 (304)
T ss_pred HHHHHhcCh
Confidence 889888654
No 205
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.54 E-value=2.4e+02 Score=21.39 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=31.9
Q ss_pred eEEEecCCCcchHHHHHHH-----HhCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEeec
Q 040684 30 VVLYQYEACPFCNKVKAFL-----DYYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQMVD 88 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L-----~~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l~e 88 (256)
+..++-++|+.|..+--.| .+.++.|-.+.++ .. .+. .-+-..+|+|.. +|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d--~~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS--AT-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc--ch-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 4556668899998664433 2233444444444 21 222 346678998886 7876554
No 206
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=30.51 E-value=1.6e+02 Score=19.20 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=32.8
Q ss_pred eEEEecCCCcchHHHHHHHHhC----CCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeE
Q 040684 30 VVLYQYEACPFCNKVKAFLDYY----RIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQ 85 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~----gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~ 85 (256)
+..++-++|+.|....-.+... +-.+....++.....++. .-....+|+++. +|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 5566667899999876666432 113444555544333332 235567998885 6644
No 207
>PRK10996 thioredoxin 2; Provisional
Probab=30.36 E-value=2.1e+02 Score=20.61 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=33.2
Q ss_pred eEEEecCCCcchHHHHHHHHh----CCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY----YRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQM 86 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~----~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l 86 (256)
+..++-++|+.|....-.+.. .+-.+....++....+++. ...-..+|++.. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 566677889999976544432 2223444555544333332 345677898875 67544
No 208
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.04 E-value=3.9e+02 Score=23.60 Aligned_cols=92 Identities=8% Similarity=-0.037 Sum_probs=50.9
Q ss_pred CceEEEe-cCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECCeEeeccHHHHHHHHHhcCCCCCC
Q 040684 28 SDVVLYQ-YEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGEQMVDSSDIMDKLFQRIHLDNAS 106 (256)
Q Consensus 28 ~~~~Ly~-~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~ 106 (256)
..+.|.. +......+-++-+|+..||+.......-..-++++..+...+=++.-.. ....+.+||+++|+-+...
T Consensus 173 ~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~----~~~~~a~~Le~~fGiP~~~ 248 (421)
T cd01976 173 YDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYR----SMNYIARMMEEKYGIPWME 248 (421)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcH----HHHHHHHHHHHHhCCcEEe
Confidence 4466654 2223455678889999999987544321223445545554444333110 0135899999999876432
Q ss_pred --CCC-HHHHHHHHHHHhHh
Q 040684 107 --SQS-DEEKKWRAWVDNHL 123 (256)
Q Consensus 107 --~~~-~~~~~~~~~~~~~~ 123 (256)
|-. ....+|++-+.+.+
T Consensus 249 ~~p~Gi~~t~~~l~~ia~~~ 268 (421)
T cd01976 249 YNFFGPTKIAESLRKIAAYF 268 (421)
T ss_pred cccCCHHHHHHHHHHHHHHh
Confidence 222 33555555554443
No 209
>PF13728 TraF: F plasmid transfer operon protein
Probab=29.48 E-value=2.4e+02 Score=22.27 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=33.2
Q ss_pred eEEEecCCCcchHHH----HHHHHhCCCCeEEEEcCCc----------chhhHhhcCCCcccEEEE
Q 040684 30 VVLYQYEACPFCNKV----KAFLDYYRIPYKVVEVNPI----------SKKEIKWSDYKKVPILKV 81 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kv----r~~L~~~gi~y~~~~v~~~----------~~~~~~~~p~~~vP~L~~ 81 (256)
+.+++...||+|+.- +.+-...|++...+.+|-. +.+..+.-.-..+|+|..
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 677777889999764 5555677998888887611 111122223358998875
No 210
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=28.64 E-value=54 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.649 Sum_probs=14.3
Q ss_pred ceEEEecCCCcchHHHHHHHH
Q 040684 29 DVVLYQYEACPFCNKVKAFLD 49 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~ 49 (256)
.+.+++.+.||+|.+..--+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 367777899999998865554
No 211
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=28.14 E-value=90 Score=17.20 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.0
Q ss_pred CCCcccEEEECCeEeeccHHHHHHHH
Q 040684 72 DYKKVPILKVDGEQMVDSSDIMDKLF 97 (256)
Q Consensus 72 p~~~vP~L~~~g~~l~eS~~I~~yL~ 97 (256)
..|.+|....++..+.....|.+|++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 45778887777888888899988876
No 212
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=28.08 E-value=1.8e+02 Score=19.19 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=30.8
Q ss_pred ceEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCe
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGE 84 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~ 84 (256)
-+..++.++|+.|....-.+.. .|. +....++......+. ...-..+|++.. +|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 3667777889999876655532 221 333344433322322 234567898875 553
No 213
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=27.91 E-value=1.6e+02 Score=20.26 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=24.4
Q ss_pred CceEEEecCCCcchHHHHHHHHhCCCCeEEEE
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYYRIPYKVVE 59 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~ 59 (256)
|.-.|.....+|...-++.+.+++|||++...
T Consensus 56 P~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 56 PWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CCEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 44566666777888888888888888887764
No 214
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=27.73 E-value=2e+02 Score=25.76 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=34.4
Q ss_pred eEEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEEC
Q 040684 30 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVD 82 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~ 82 (256)
++++..-.|..++.+..+|+...++|+...+. ..|.+|+|.++
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~----------~kg~lP~LT~~ 105 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFKYKVEIAS----------GKGDLPVLTDN 105 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceeeEEEEEcc----------CCCCCCccccC
Confidence 45555567999999999999999999887665 46778888874
No 215
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=4e+02 Score=24.76 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=37.8
Q ss_pred EEEecCCCcchHHHHHHHHhCCCCeEEEEcCCcchhhHhhcCCCcccEEEECC---eEeeccHHHHHHH
Q 040684 31 VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDG---EQMVDSSDIMDKL 96 (256)
Q Consensus 31 ~Ly~~~~sp~~~kvr~~L~~~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g---~~l~eS~~I~~yL 96 (256)
.+.....|..++-+-..|+...+.|...... +.+.+|+|.+++ -.+.=-..|+.|+
T Consensus 82 vfves~ysqlGq~Ii~iLessrfqy~~eiap----------gkgdlPvLtd~~kGry~liIyEN~~KYv 140 (873)
T KOG3703|consen 82 VFVESQYSQLGQDIIAILESSRFQYKIEIAP----------GKGDLPVLTDNGKGRYSLIIYENILKYV 140 (873)
T ss_pred EEEecchhhhhhHHHHHHHhccceEEEEecc----------CCCCCceeeeCCCccEEEEEehHHHHHh
Confidence 3444556777888889999999998765443 578899999843 2233334566665
No 216
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=26.11 E-value=1.9e+02 Score=18.69 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=30.3
Q ss_pred eEEEecCCCcchHHHHHHHHh----CCCCeEEEEcCCcchhhH-hhcCCCcccEEEE--CCe
Q 040684 30 VVLYQYEACPFCNKVKAFLDY----YRIPYKVVEVNPISKKEI-KWSDYKKVPILKV--DGE 84 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~----~gi~y~~~~v~~~~~~~~-~~~p~~~vP~L~~--~g~ 84 (256)
+..++.++|+.|....-.+.. .+-......++......+ +.-....+|++.. +|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 556666789999988655532 121234444443322222 2334567998875 554
No 217
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=25.89 E-value=2e+02 Score=18.92 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=29.6
Q ss_pred eEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcchhhHh-hcCCCcccEEEE
Q 040684 30 VVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPISKKEIK-WSDYKKVPILKV 81 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~ 81 (256)
+..++.++|+.|....-.+.. .+..+....++......+. ...-..+|++..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 777888899999876654432 2223333344433222222 345677888875
No 218
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=25.65 E-value=1.4e+02 Score=21.20 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=26.3
Q ss_pred CCCcchHHHHHHH----HhCCCCeEEEEcCCcchhh-------HhhcC---CCcccEEEE--CCeEeeccH
Q 040684 36 EACPFCNKVKAFL----DYYRIPYKVVEVNPISKKE-------IKWSD---YKKVPILKV--DGEQMVDSS 90 (256)
Q Consensus 36 ~~sp~~~kvr~~L----~~~gi~y~~~~v~~~~~~~-------~~~~p---~~~vP~L~~--~g~~l~eS~ 90 (256)
.+||.|..+.-.+ ....-....+.+....+++ ++.+| ...||+|.- ++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 4689998877444 3332234444443323333 33333 367999996 445566543
No 219
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.94 E-value=38 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=17.7
Q ss_pred CceEEEecCCCcchHHHHHHHHhC
Q 040684 28 SDVVLYQYEACPFCNKVKAFLDYY 51 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~~L~~~ 51 (256)
-+|.+|+-..||||...+--|+..
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHH
Confidence 347888888999998766655543
No 220
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=23.84 E-value=4e+02 Score=23.34 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=41.7
Q ss_pred eEEEecCCCcchHHHHHHHH-------hCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeE-------eeccHHH
Q 040684 30 VVLYQYEACPFCNKVKAFLD-------YYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQ-------MVDSSDI 92 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~-------~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~-------l~eS~~I 92 (256)
+.+++.++|+.|....-.+. ..+-.+....++-....++. .-.-..+|++.. +|.. ..+...|
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 101 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGI 101 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHH
Confidence 67778889999998643332 22322444444433222332 234556887764 4433 1256788
Q ss_pred HHHHHHhcCC
Q 040684 93 MDKLFQRIHL 102 (256)
Q Consensus 93 ~~yL~~~~~~ 102 (256)
.+++.+..+.
T Consensus 102 ~~~i~~~~~~ 111 (462)
T TIGR01130 102 VKYMKKQSGP 111 (462)
T ss_pred HHHHHHhcCC
Confidence 8999887653
No 221
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=23.48 E-value=1.6e+02 Score=23.95 Aligned_cols=47 Identities=21% Similarity=0.471 Sum_probs=31.8
Q ss_pred eEEEecCCCcchHHHHHHHHh-----CCCCeEEEEcCCcchhhHhhcCCCcccEEEECC
Q 040684 30 VVLYQYEACPFCNKVKAFLDY-----YRIPYKVVEVNPISKKEIKWSDYKKVPILKVDG 83 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~-----~gi~y~~~~v~~~~~~~~~~~p~~~vP~L~~~g 83 (256)
+.+.++.+||+|..-|+.|-. -++.+....-+.. .....+|.|...+
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~-------d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY-------DNYPNTPTLIFNN 113 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc-------cCCCCCCeEEEec
Confidence 577788899999999988743 3454444444432 2467788888643
No 222
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=3.9e+02 Score=24.30 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=48.2
Q ss_pred eEEEecCCCcchHH-------HHHHHHhCCCCeEEEEcCCcchhhHh-hcCCCcccEEEE--CCeE------eeccHHHH
Q 040684 30 VVLYQYEACPFCNK-------VKAFLDYYRIPYKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQ------MVDSSDIM 93 (256)
Q Consensus 30 ~~Ly~~~~sp~~~k-------vr~~L~~~gi~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~------l~eS~~I~ 93 (256)
+.-|+-|+|+.|.+ +--.|.+.|=+.....||-....++. .-.....|+|.+ +|.. .-+...|+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 45667788877765 33455666667777777744333333 234566788876 5653 33779999
Q ss_pred HHHHHhcCCC
Q 040684 94 DKLFQRIHLD 103 (256)
Q Consensus 94 ~yL~~~~~~~ 103 (256)
.||..+.+..
T Consensus 126 ~wl~kq~gPa 135 (493)
T KOG0190|consen 126 KWLKKQSGPA 135 (493)
T ss_pred HHHHhccCCC
Confidence 9999987654
No 223
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=23.08 E-value=57 Score=20.01 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=16.2
Q ss_pred ceEEEecC----CCcchHHHHHHHHh
Q 040684 29 DVVLYQYE----ACPFCNKVKAFLDY 50 (256)
Q Consensus 29 ~~~Ly~~~----~sp~~~kvr~~L~~ 50 (256)
+++||.+- .|.||+||-.+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 36777663 47899999888853
No 224
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=22.26 E-value=2.4e+02 Score=18.88 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=30.6
Q ss_pred eEEEecCCCcchHHHHHHHHhC-----C-C----CeEEEEcCCcchhhHh-hcCCCcccEEEE--CCe
Q 040684 30 VVLYQYEACPFCNKVKAFLDYY-----R-I----PYKVVEVNPISKKEIK-WSDYKKVPILKV--DGE 84 (256)
Q Consensus 30 ~~Ly~~~~sp~~~kvr~~L~~~-----g-i----~y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~ 84 (256)
+..++.++|+.|+...-.+... + . ......++-....++. ...-..+|++.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 6677788999999876555321 0 1 1233333322222332 345678898875 554
No 225
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.26 E-value=88 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCeEeeccHHHHHHHHHhcC
Q 040684 82 DGEQMVDSSDIMDKLFQRIH 101 (256)
Q Consensus 82 ~g~~l~eS~~I~~yL~~~~~ 101 (256)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 35679999999999999998
No 226
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.90 E-value=1.6e+02 Score=16.74 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=23.5
Q ss_pred cCCCcccEEEECCeEeeccHHHHHHHHHh
Q 040684 71 SDYKKVPILKVDGEQMVDSSDIMDKLFQR 99 (256)
Q Consensus 71 ~p~~~vP~L~~~g~~l~eS~~I~~yL~~~ 99 (256)
.-.+.+|.+..++.....-.+|.+|+.++
T Consensus 22 ~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 22 IRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 34678888887788889999999998764
No 227
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=21.17 E-value=3.7e+02 Score=20.24 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEec-CCCcchH-------HHHHHHHhCCCCeEEEEcCCcc
Q 040684 30 VVLYQY-EACPFCN-------KVKAFLDYYRIPYKVVEVNPIS 64 (256)
Q Consensus 30 ~~Ly~~-~~sp~~~-------kvr~~L~~~gi~y~~~~v~~~~ 64 (256)
+.||.. .+||-|+ +..-.+...+-+++.+.|+-..
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 455543 3565443 4455566777789998886443
No 228
>PRK09266 hypothetical protein; Provisional
Probab=20.58 E-value=3.1e+02 Score=22.27 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=39.3
Q ss_pred HHHhCCCCeEEEEcCCcch---hhHh-hc-CCCcccEEEECCeEeeccHHHHHHHHHhcCC
Q 040684 47 FLDYYRIPYKVVEVNPISK---KEIK-WS-DYKKVPILKVDGEQMVDSSDIMDKLFQRIHL 102 (256)
Q Consensus 47 ~L~~~gi~y~~~~v~~~~~---~~~~-~~-p~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~ 102 (256)
.+...|++++...+.+..- +++- .| -.+-+||-..|+..+.+...|.+.|.+.|..
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 4456689988888875332 2322 33 4699999999988887667888888777643
No 229
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=20.48 E-value=1.4e+02 Score=20.87 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=35.2
Q ss_pred eEEEecC--CCcchHHHHHHHHhCCCC----eEEEEcCCcchhhHh-hcCCCcccEEEE--CCeEeec
Q 040684 30 VVLYQYE--ACPFCNKVKAFLDYYRIP----YKVVEVNPISKKEIK-WSDYKKVPILKV--DGEQMVD 88 (256)
Q Consensus 30 ~~Ly~~~--~sp~~~kvr~~L~~~gi~----y~~~~v~~~~~~~~~-~~p~~~vP~L~~--~g~~l~e 88 (256)
+.+++-. .||-|.-+.-.|++.-=. .....++....+++. ...-..+|+|+. +|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 5666666 499999888776433222 222233333333444 356778999986 8876654
No 230
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=20.47 E-value=1e+02 Score=24.69 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=17.8
Q ss_pred ceEEEecCCCcchHHHHHHHHh
Q 040684 29 DVVLYQYEACPFCNKVKAFLDY 50 (256)
Q Consensus 29 ~~~Ly~~~~sp~~~kvr~~L~~ 50 (256)
.+++|.-+.||||.+..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 3778888999999998766654
No 231
>PRK15371 effector protein YopJ; Provisional
Probab=20.15 E-value=4.2e+02 Score=22.16 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCCCChhHHHHHhhhhhhhccc-cccCcccCCcHHHHHHHHHhh
Q 040684 182 DERVSLYEAAEIWVDALNGRHYLGGSKPNLADLAVFGVLRPIRHLK-SGRDMVEHTRIGDWYTRMESS 248 (256)
Q Consensus 182 ~~~~~~~~~l~~~~~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~-~~~~~~~~p~L~~w~~r~~~~ 248 (256)
...+++...++.+|+.++.+.|+ -..++..|+-+.+.|.-..... ++-.+..+..-.+.++.+++.
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL~~f~s~~~f~~aik~~ 89 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANNKYPEMNLKLVTSPLDLSIEIKET 89 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhccCCCCCeeecCCHHHHHHHHHHH
Confidence 45677888899999999998888 5579999999999888775322 223344444555555555543
No 232
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.05 E-value=1.6e+02 Score=22.96 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=23.8
Q ss_pred CceEEEecCCCcchHHHHH----HHHhCCCCeEEEEcC
Q 040684 28 SDVVLYQYEACPFCNKVKA----FLDYYRIPYKVVEVN 61 (256)
Q Consensus 28 ~~~~Ly~~~~sp~~~kvr~----~L~~~gi~y~~~~v~ 61 (256)
|+|.+|+...||||.-..- ++...+++.+.+.+.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 4688999999999987533 344566666666654
Done!