Query 040688
Match_columns 484
No_of_seqs 210 out of 1452
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-141 3E-146 1090.4 41.5 477 5-483 23-509 (524)
2 PLN02998 beta-glucosidase 100.0 5E-134 1E-138 1064.0 45.9 465 7-483 19-488 (497)
3 PLN02849 beta-glucosidase 100.0 9E-134 2E-138 1063.6 46.9 458 12-484 23-484 (503)
4 PLN02814 beta-glucosidase 100.0 3E-133 6E-138 1060.1 46.3 456 13-483 22-483 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 4E-131 9E-136 1007.3 40.1 444 17-483 2-453 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 6E-130 1E-134 1030.5 47.0 443 17-483 2-464 (467)
7 PRK13511 6-phospho-beta-galact 100.0 5E-130 1E-134 1033.2 46.2 447 17-483 3-466 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 2E-128 5E-133 1020.0 46.6 443 16-483 3-473 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 7E-130 2E-134 1033.0 34.0 447 16-484 2-454 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 5E-128 1E-132 1017.3 46.4 441 18-483 3-472 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 1E-127 3E-132 1012.7 47.2 444 14-483 1-473 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1E-126 2E-131 1004.3 46.8 441 18-483 3-469 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5E-124 1E-128 978.0 42.4 426 19-476 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 1.1E-13 2.3E-18 136.2 24.4 251 92-475 1-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 6.2E-12 1.3E-16 130.6 9.1 109 71-183 10-141 (374)
16 PF07745 Glyco_hydro_53: Glyco 99.2 3.6E-09 7.8E-14 107.1 24.3 253 74-444 27-299 (332)
17 PF00150 Cellulase: Cellulase 99.2 1E-10 2.2E-15 115.7 9.2 109 72-183 22-134 (281)
18 PF00331 Glyco_hydro_10: Glyco 99.1 1.3E-08 2.8E-13 103.5 24.0 267 91-478 43-318 (320)
19 PRK10150 beta-D-glucuronidase; 99.1 1.6E-08 3.5E-13 111.5 24.5 262 71-481 313-593 (604)
20 PF01229 Glyco_hydro_39: Glyco 99.1 4.6E-09 9.9E-14 112.8 18.6 292 72-479 40-359 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.8 1.1E-06 2.3E-11 87.0 22.7 272 91-482 66-343 (345)
22 COG1874 LacA Beta-galactosidas 98.5 1.7E-07 3.8E-12 102.3 7.4 119 72-194 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.2 1.5E-05 3.2E-10 80.3 12.6 93 69-180 34-132 (298)
24 COG2730 BglC Endoglucanase [Ca 97.8 5.9E-05 1.3E-09 79.3 9.0 117 66-182 63-193 (407)
25 COG3867 Arabinogalactan endo-1 97.7 0.0099 2.2E-07 58.5 21.0 267 75-459 67-361 (403)
26 PF01301 Glyco_hydro_35: Glyco 97.4 0.00069 1.5E-08 68.9 9.6 108 72-180 25-150 (319)
27 PRK10340 ebgA cryptic beta-D-g 97.0 0.036 7.8E-07 65.0 18.7 92 69-180 353-450 (1021)
28 PLN03059 beta-galactosidase; P 96.9 0.0092 2E-07 67.1 12.7 109 71-181 59-188 (840)
29 PF01373 Glyco_hydro_14: Glyco 96.7 0.0027 5.8E-08 65.6 5.8 107 70-182 15-152 (402)
30 PF14587 Glyco_hydr_30_2: O-Gl 96.6 0.013 2.9E-07 60.2 10.3 100 82-182 58-185 (384)
31 PLN02803 beta-amylase 96.6 0.01 2.2E-07 63.0 9.2 107 71-182 107-252 (548)
32 PLN02161 beta-amylase 96.5 0.011 2.3E-07 62.4 9.1 111 67-182 113-262 (531)
33 PF11790 Glyco_hydro_cc: Glyco 96.5 0.015 3.2E-07 56.7 9.7 67 370-446 151-217 (239)
34 PLN00197 beta-amylase; Provisi 96.5 0.012 2.6E-07 62.6 9.2 106 72-182 128-272 (573)
35 PLN02801 beta-amylase 96.3 0.023 4.9E-07 60.1 9.9 108 71-182 37-183 (517)
36 PF13204 DUF4038: Protein of u 96.0 0.033 7.1E-07 56.0 9.2 103 73-180 32-156 (289)
37 PLN02905 beta-amylase 95.9 0.041 8.9E-07 59.4 9.8 112 67-182 282-432 (702)
38 PF03198 Glyco_hydro_72: Gluca 95.9 0.21 4.6E-06 50.1 14.1 90 72-180 54-145 (314)
39 PLN02705 beta-amylase 95.8 0.049 1.1E-06 58.6 9.8 109 70-182 267-414 (681)
40 PF14488 DUF4434: Domain of un 93.9 0.35 7.6E-06 44.4 8.8 101 72-181 21-131 (166)
41 KOG0496 Beta-galactosidase [Ca 93.4 0.34 7.3E-06 52.9 8.8 109 72-181 50-176 (649)
42 PRK09525 lacZ beta-D-galactosi 92.7 0.38 8.3E-06 56.5 8.7 91 69-181 369-464 (1027)
43 COG3664 XynB Beta-xylosidase [ 91.5 0.33 7.2E-06 50.2 5.6 99 80-183 14-117 (428)
44 PF12891 Glyco_hydro_44: Glyco 91.3 0.65 1.4E-05 45.0 7.1 117 111-251 24-183 (239)
45 COG3934 Endo-beta-mannanase [C 91.0 0.091 2E-06 55.1 1.0 109 73-182 28-150 (587)
46 COG3250 LacZ Beta-galactosidas 90.9 0.97 2.1E-05 51.6 9.1 90 67-181 317-408 (808)
47 PF07488 Glyco_hydro_67M: Glyc 86.7 4.3 9.2E-05 40.7 9.1 91 70-169 56-150 (328)
48 PF02055 Glyco_hydro_30: O-Gly 81.3 87 0.0019 34.0 21.2 98 375-480 319-420 (496)
49 smart00642 Aamy Alpha-amylase 80.7 4 8.7E-05 37.4 5.9 64 69-132 17-91 (166)
50 PF00332 Glyco_hydro_17: Glyco 80.1 1.5 3.2E-05 44.6 3.1 87 372-472 212-307 (310)
51 PF14871 GHL6: Hypothetical gl 78.1 10 0.00022 33.5 7.4 91 76-167 5-123 (132)
52 PF10566 Glyco_hydro_97: Glyco 70.9 18 0.00039 36.0 7.9 119 45-166 9-149 (273)
53 PF00128 Alpha-amylase: Alpha 70.8 3.4 7.3E-05 40.7 2.9 57 74-132 7-73 (316)
54 PLN02361 alpha-amylase 70.6 9.3 0.0002 40.2 6.1 64 68-131 26-96 (401)
55 PRK12313 glycogen branching en 67.5 18 0.0004 40.4 8.1 93 70-168 169-302 (633)
56 cd07939 DRE_TIM_NifV Streptomy 67.2 16 0.00035 35.9 6.7 78 74-165 72-150 (259)
57 PRK05402 glycogen branching en 66.6 21 0.00046 40.6 8.4 96 72-175 266-402 (726)
58 TIGR00612 ispG_gcpE 1-hydroxy- 65.8 44 0.00095 34.2 9.4 88 63-164 74-161 (346)
59 COG5309 Exo-beta-1,3-glucanase 65.2 25 0.00055 34.7 7.3 55 62-132 54-108 (305)
60 cd07945 DRE_TIM_CMS Leptospira 65.2 18 0.0004 36.0 6.8 82 73-165 76-158 (280)
61 PF02638 DUF187: Glycosyl hydr 64.3 30 0.00065 35.1 8.2 97 71-168 19-154 (311)
62 PRK05799 coproporphyrinogen II 63.9 19 0.00042 37.2 7.0 93 74-183 99-195 (374)
63 cd07948 DRE_TIM_HCS Saccharomy 63.9 25 0.00055 34.7 7.4 59 74-132 74-133 (262)
64 cd06543 GH18_PF-ChiA-like PF-C 63.7 32 0.0007 34.6 8.2 79 78-169 19-105 (294)
65 PLN00196 alpha-amylase; Provis 63.5 12 0.00027 39.7 5.4 63 69-131 42-112 (428)
66 TIGR02402 trehalose_TreZ malto 62.3 25 0.00055 38.6 7.7 57 70-132 110-181 (542)
67 TIGR02403 trehalose_treC alpha 61.7 11 0.00025 41.2 4.9 58 69-132 25-96 (543)
68 TIGR02090 LEU1_arch isopropylm 61.3 22 0.00047 36.9 6.7 60 73-132 73-133 (363)
69 cd03174 DRE_TIM_metallolyase D 60.6 25 0.00054 34.2 6.7 80 74-165 77-157 (265)
70 PRK14041 oxaloacetate decarbox 60.1 29 0.00063 37.3 7.5 56 69-137 88-148 (467)
71 PRK09441 cytoplasmic alpha-amy 59.4 14 0.00029 39.9 5.0 64 68-131 19-101 (479)
72 PRK10933 trehalose-6-phosphate 58.5 14 0.0003 40.6 4.9 61 70-132 32-102 (551)
73 PRK14040 oxaloacetate decarbox 58.2 32 0.00069 38.2 7.6 51 69-132 90-145 (593)
74 KOG2233 Alpha-N-acetylglucosam 57.9 35 0.00075 36.5 7.3 111 70-180 77-248 (666)
75 PF12876 Cellulase-like: Sugar 57.8 5.8 0.00013 32.1 1.4 19 163-181 1-22 (88)
76 TIGR00433 bioB biotin syntheta 55.3 52 0.0011 32.6 8.1 55 74-131 123-178 (296)
77 PF03659 Glyco_hydro_71: Glyco 55.2 43 0.00093 35.1 7.7 50 72-131 18-67 (386)
78 PRK12581 oxaloacetate decarbox 55.1 36 0.00078 36.6 7.1 56 69-137 98-158 (468)
79 PLN02784 alpha-amylase 53.9 28 0.0006 40.1 6.3 64 68-131 518-588 (894)
80 PRK09058 coproporphyrinogen II 53.8 49 0.0011 35.4 8.0 105 74-194 163-270 (449)
81 TIGR01515 branching_enzym alph 53.8 60 0.0013 36.2 9.0 92 71-168 156-288 (613)
82 PRK12399 tagatose 1,6-diphosph 52.7 62 0.0013 32.9 7.9 59 77-138 111-169 (324)
83 cd07944 DRE_TIM_HOA_like 4-hyd 52.6 50 0.0011 32.6 7.4 65 74-165 85-149 (266)
84 PRK05692 hydroxymethylglutaryl 52.3 46 0.00099 33.3 7.1 86 72-166 80-167 (287)
85 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.2 77 0.0017 31.5 8.6 69 73-166 93-161 (275)
86 TIGR02456 treS_nterm trehalose 52.0 19 0.00041 39.4 4.7 54 72-131 29-96 (539)
87 PRK00366 ispG 4-hydroxy-3-meth 51.9 75 0.0016 32.8 8.5 74 80-164 97-170 (360)
88 TIGR02660 nifV_homocitr homoci 51.8 38 0.00082 35.1 6.6 78 74-165 75-153 (365)
89 PRK09505 malS alpha-amylase; R 51.8 24 0.00053 39.8 5.5 60 73-132 232-313 (683)
90 PRK04161 tagatose 1,6-diphosph 51.8 66 0.0014 32.8 8.0 60 76-138 112-171 (329)
91 PRK12858 tagatose 1,6-diphosph 51.7 56 0.0012 33.7 7.7 53 77-132 112-164 (340)
92 cd06593 GH31_xylosidase_YicI Y 49.8 88 0.0019 31.4 8.8 106 73-181 26-161 (308)
93 PLN02447 1,4-alpha-glucan-bran 49.2 27 0.00058 39.9 5.3 94 69-168 248-383 (758)
94 PRK11858 aksA trans-homoaconit 48.9 50 0.0011 34.5 7.0 58 74-131 78-136 (378)
95 PLN02746 hydroxymethylglutaryl 48.9 55 0.0012 33.8 7.2 85 73-166 123-209 (347)
96 PRK14706 glycogen branching en 47.0 58 0.0013 36.5 7.5 89 78-168 175-299 (639)
97 PRK12331 oxaloacetate decarbox 46.8 72 0.0016 34.2 7.9 51 74-137 99-149 (448)
98 PRK10785 maltodextrin glucosid 46.7 31 0.00066 38.4 5.3 54 73-132 181-247 (598)
99 PF03511 Fanconi_A: Fanconi an 45.6 14 0.00031 27.9 1.7 38 95-134 19-56 (64)
100 cd06592 GH31_glucosidase_KIAA1 45.4 94 0.002 31.3 8.2 106 73-181 32-167 (303)
101 cd06602 GH31_MGAM_SI_GAA This 44.9 1.1E+02 0.0023 31.5 8.6 69 114-183 69-169 (339)
102 cd07943 DRE_TIM_HOA 4-hydroxy- 44.0 1.6E+02 0.0036 28.7 9.5 46 74-132 88-133 (263)
103 TIGR01210 conserved hypothetic 43.7 1.4E+02 0.003 30.2 9.2 108 74-195 117-229 (313)
104 TIGR01108 oadA oxaloacetate de 43.7 73 0.0016 35.4 7.5 92 74-182 94-205 (582)
105 PRK08599 coproporphyrinogen II 43.4 1.2E+02 0.0027 31.3 9.0 95 73-183 99-196 (377)
106 COG1501 Alpha-glucosidases, fa 43.0 75 0.0016 36.5 7.7 101 83-186 294-422 (772)
107 PRK03705 glycogen debranching 42.9 49 0.0011 37.3 6.1 55 77-132 185-263 (658)
108 cd06591 GH31_xylosidase_XylS X 42.4 1.2E+02 0.0026 30.8 8.5 71 113-184 68-164 (319)
109 TIGR01232 lacD tagatose 1,6-di 42.3 1.2E+02 0.0025 31.0 8.0 60 76-138 111-170 (325)
110 COG1523 PulA Type II secretory 42.3 49 0.0011 37.4 5.9 55 77-131 206-285 (697)
111 PRK14511 maltooligosyl trehalo 42.2 37 0.00081 39.3 5.1 55 71-131 20-89 (879)
112 PRK14705 glycogen branching en 42.1 93 0.002 37.6 8.5 89 74-168 768-897 (1224)
113 TIGR03217 4OH_2_O_val_ald 4-hy 41.6 2.3E+02 0.0049 29.1 10.3 46 74-132 90-135 (333)
114 PRK07379 coproporphyrinogen II 40.9 1.3E+02 0.0029 31.5 8.8 103 74-193 115-221 (400)
115 PLN02389 biotin synthase 40.9 1.4E+02 0.0031 31.2 8.9 58 72-132 176-234 (379)
116 PRK14510 putative bifunctional 40.5 31 0.00066 41.7 4.3 59 69-131 183-267 (1221)
117 cd07947 DRE_TIM_Re_CS Clostrid 40.1 62 0.0013 32.3 5.8 59 73-131 76-135 (279)
118 cd06601 GH31_lyase_GLase GLase 39.9 1.2E+02 0.0026 31.1 8.0 71 114-186 67-140 (332)
119 COG3589 Uncharacterized conser 39.9 1E+02 0.0022 31.6 7.2 71 75-159 20-90 (360)
120 PRK12568 glycogen branching en 39.7 37 0.00081 38.5 4.6 93 70-168 268-401 (730)
121 cd06598 GH31_transferase_CtsZ 39.6 1.7E+02 0.0038 29.5 9.1 107 74-183 27-168 (317)
122 cd06603 GH31_GANC_GANAB_alpha 39.4 1.1E+02 0.0024 31.3 7.7 71 114-184 67-167 (339)
123 TIGR00539 hemN_rel putative ox 39.1 73 0.0016 32.8 6.4 60 74-138 100-163 (360)
124 TIGR03234 OH-pyruv-isom hydrox 39.0 68 0.0015 31.0 5.9 65 70-137 83-150 (254)
125 cd02874 GH18_CFLE_spore_hydrol 38.6 1.2E+02 0.0027 30.3 7.9 84 77-168 16-103 (313)
126 cd07940 DRE_TIM_IPMS 2-isoprop 38.1 87 0.0019 30.8 6.5 78 74-165 72-154 (268)
127 cd07938 DRE_TIM_HMGL 3-hydroxy 38.0 99 0.0021 30.7 6.9 83 74-165 76-160 (274)
128 TIGR02401 trehalose_TreY malto 37.1 50 0.0011 38.1 5.0 55 71-131 16-85 (825)
129 PRK08195 4-hyroxy-2-oxovalerat 35.8 81 0.0017 32.4 6.0 67 74-168 91-157 (337)
130 PLN02960 alpha-amylase 35.3 56 0.0012 37.8 5.1 95 68-168 413-549 (897)
131 COG0821 gcpE 1-hydroxy-2-methy 35.3 1.1E+02 0.0024 31.4 6.5 74 80-165 91-164 (361)
132 COG0366 AmyA Glycosidases [Car 34.4 44 0.00095 35.6 4.0 59 75-133 33-101 (505)
133 PRK07094 biotin synthase; Prov 34.2 1.2E+02 0.0027 30.4 7.1 57 72-131 127-185 (323)
134 TIGR01212 radical SAM protein, 34.0 1E+02 0.0022 31.1 6.3 72 111-195 163-234 (302)
135 cd06600 GH31_MGAM-like This fa 33.2 2.5E+02 0.0054 28.4 9.1 69 114-183 67-164 (317)
136 TIGR00423 radical SAM domain p 33.0 2.4E+02 0.0053 28.3 9.0 54 73-132 106-166 (309)
137 cd02742 GH20_hexosaminidase Be 32.5 1.1E+02 0.0025 30.6 6.4 64 72-141 17-99 (303)
138 cd06545 GH18_3CO4_chitinase Th 32.5 1.1E+02 0.0024 29.7 6.2 74 90-168 26-99 (253)
139 TIGR01589 A_thal_3526 uncharac 32.4 50 0.0011 24.7 2.8 36 114-160 19-55 (57)
140 TIGR02635 RhaI_grampos L-rhamn 32.2 1.6E+02 0.0034 30.9 7.4 90 64-169 34-130 (378)
141 smart00729 Elp3 Elongator prot 32.2 2.6E+02 0.0057 25.0 8.5 57 72-131 98-157 (216)
142 TIGR03471 HpnJ hopanoid biosyn 31.9 1.5E+02 0.0032 31.8 7.5 60 74-137 287-348 (472)
143 PF09713 A_thal_3526: Plant pr 31.6 39 0.00085 25.0 2.1 36 114-160 16-52 (54)
144 PF04914 DltD_C: DltD C-termin 31.5 1.2E+02 0.0027 26.6 5.6 54 113-170 38-91 (130)
145 cd06542 GH18_EndoS-like Endo-b 31.4 1.2E+02 0.0027 29.2 6.4 55 110-168 50-104 (255)
146 PF00150 Cellulase: Cellulase 31.1 1.1E+02 0.0023 29.6 5.9 56 113-171 23-78 (281)
147 PRK14507 putative bifunctional 31.0 92 0.002 38.9 6.2 65 71-141 758-844 (1693)
148 PRK12330 oxaloacetate decarbox 31.0 1.7E+02 0.0037 31.8 7.7 24 74-97 100-123 (499)
149 cd07941 DRE_TIM_LeuA3 Desulfob 30.7 76 0.0016 31.4 4.7 80 75-165 82-162 (273)
150 PRK01060 endonuclease IV; Prov 30.5 2.2E+02 0.0047 27.8 8.0 51 73-128 14-64 (281)
151 TIGR01211 ELP3 histone acetylt 30.4 1.9E+02 0.0041 31.6 8.0 105 74-195 206-316 (522)
152 TIGR03581 EF_0839 conserved hy 29.5 1.9E+02 0.0041 27.9 6.7 68 71-167 135-202 (236)
153 PF10566 Glyco_hydro_97: Glyco 29.5 1.3E+02 0.0028 30.0 6.1 61 73-144 108-168 (273)
154 PRK12677 xylose isomerase; Pro 28.2 4.1E+02 0.0089 27.8 9.8 71 73-150 33-104 (384)
155 PF07071 DUF1341: Protein of u 28.0 1.1E+02 0.0024 29.1 4.9 67 71-166 135-201 (218)
156 COG3534 AbfA Alpha-L-arabinofu 27.4 2E+02 0.0043 30.8 7.1 93 73-180 50-174 (501)
157 PRK06256 biotin synthase; Vali 26.6 1.7E+02 0.0038 29.6 6.7 57 72-131 150-207 (336)
158 PF02065 Melibiase: Melibiase; 26.6 4.3E+02 0.0093 27.8 9.6 92 72-168 59-183 (394)
159 PF05089 NAGLU: Alpha-N-acetyl 26.4 1.4E+02 0.003 30.6 5.7 34 111-144 95-128 (333)
160 TIGR02100 glgX_debranch glycog 25.8 1.2E+02 0.0026 34.4 5.7 56 77-132 190-266 (688)
161 PF02057 Glyco_hydro_59: Glyco 25.3 1.3E+02 0.0028 33.8 5.6 64 115-181 116-184 (669)
162 PTZ00445 p36-lilke protein; Pr 25.2 1.4E+02 0.003 28.7 5.1 55 77-132 35-99 (219)
163 cd06565 GH20_GcnA-like Glycosy 25.1 2E+02 0.0044 28.8 6.7 62 73-141 19-87 (301)
164 PRK13209 L-xylulose 5-phosphat 25.0 5.4E+02 0.012 25.0 9.7 54 72-129 22-75 (283)
165 cd06568 GH20_SpHex_like A subg 24.9 1.9E+02 0.0042 29.5 6.6 64 72-141 19-102 (329)
166 TIGR00542 hxl6Piso_put hexulos 24.7 4E+02 0.0086 26.0 8.7 54 72-129 17-70 (279)
167 cd06604 GH31_glucosidase_II_Ma 24.5 4.1E+02 0.0089 27.0 9.0 68 114-183 67-163 (339)
168 PF13547 GTA_TIM: GTA TIM-barr 24.5 4.4E+02 0.0095 26.5 8.5 107 147-323 1-109 (299)
169 cd06570 GH20_chitobiase-like_1 24.3 2.1E+02 0.0046 29.0 6.7 63 72-140 19-94 (311)
170 PRK06294 coproporphyrinogen II 24.3 3.9E+02 0.0084 27.7 8.8 93 74-183 103-199 (370)
171 PF00682 HMGL-like: HMGL-like 23.9 1.9E+02 0.0042 27.5 6.1 79 74-166 66-149 (237)
172 PF01261 AP_endonuc_2: Xylose 23.8 75 0.0016 29.0 3.1 60 70-129 70-130 (213)
173 KOG0470 1,4-alpha-glucan branc 23.7 91 0.002 35.2 4.1 64 70-133 253-333 (757)
174 PLN02925 4-hydroxy-3-methylbut 23.7 2.2E+02 0.0048 32.2 6.9 53 113-166 212-264 (733)
175 PF06777 DUF1227: Protein of u 23.5 1.5E+02 0.0032 26.7 4.7 68 111-179 16-85 (146)
176 PRK09282 pyruvate carboxylase 23.5 2.8E+02 0.006 30.9 7.9 92 73-182 98-210 (592)
177 cd06525 GH25_Lyc-like Lyc mura 23.5 5.7E+02 0.012 23.3 9.0 22 150-171 99-120 (184)
178 cd00927 Cyt_c_Oxidase_VIc Cyto 23.3 37 0.0008 26.5 0.7 20 66-85 45-66 (70)
179 PRK13398 3-deoxy-7-phosphohept 23.3 2.7E+02 0.0059 27.6 7.0 66 66-134 36-101 (266)
180 PRK05628 coproporphyrinogen II 23.2 4.9E+02 0.011 26.8 9.3 95 73-183 107-204 (375)
181 TIGR02631 xylA_Arthro xylose i 22.9 7.2E+02 0.016 25.9 10.5 73 71-150 32-105 (382)
182 PRK09997 hydroxypyruvate isome 22.8 1.8E+02 0.004 28.0 5.8 63 72-137 86-151 (258)
183 TIGR00542 hxl6Piso_put hexulos 22.6 1.2E+02 0.0027 29.7 4.6 59 70-130 93-152 (279)
184 PRK13210 putative L-xylulose 5 22.5 4.7E+02 0.01 25.3 8.8 53 73-129 18-70 (284)
185 PRK09432 metF 5,10-methylenete 22.4 2.3E+02 0.0051 28.4 6.5 73 111-184 189-284 (296)
186 cd06599 GH31_glycosidase_Aec37 22.3 3.1E+02 0.0066 27.7 7.5 35 147-182 137-171 (317)
187 PF04055 Radical_SAM: Radical 22.1 1.4E+02 0.0031 25.6 4.5 54 74-129 90-145 (166)
188 TIGR02629 L_rham_iso_rhiz L-rh 21.9 3E+02 0.0065 29.1 7.3 82 74-169 73-164 (412)
189 PRK09856 fructoselysine 3-epim 21.9 1.1E+02 0.0023 29.9 3.9 60 69-129 88-147 (275)
190 cd00019 AP2Ec AP endonuclease 21.8 3.5E+02 0.0077 26.3 7.7 54 71-129 10-64 (279)
191 PF13812 PPR_3: Pentatricopept 21.6 70 0.0015 19.8 1.7 15 113-127 20-34 (34)
192 TIGR00419 tim triosephosphate 21.4 1.9E+02 0.0042 27.5 5.3 43 78-131 75-117 (205)
193 PF11775 CobT_C: Cobalamin bio 21.4 3.3E+02 0.0071 26.2 6.8 67 366-438 116-185 (219)
194 PRK08508 biotin synthase; Prov 21.3 3.2E+02 0.007 27.0 7.2 56 73-131 101-157 (279)
195 TIGR03551 F420_cofH 7,8-dideme 20.8 3.4E+02 0.0073 27.7 7.5 90 72-178 139-234 (343)
196 PRK09389 (R)-citramalate synth 20.5 3E+02 0.0066 29.8 7.3 61 73-133 75-136 (488)
197 cd02803 OYE_like_FMN_family Ol 20.2 6.6E+02 0.014 25.1 9.5 38 97-134 63-100 (327)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-141 Score=1090.45 Aligned_cols=477 Identities=52% Similarity=1.025 Sum_probs=441.6
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeeecccccccCCCCCCCCcCccccccccc--CccCCCCCCCcCCccccchHHHHHHHHH
Q 040688 5 RPDGLDTAGMSRKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA--GNIASNATADLTVDQYHHYKEDIDIMAK 82 (484)
Q Consensus 5 ~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~--~~~~~~~~~~~a~d~y~ry~eDi~l~~~ 82 (484)
.+.|+.+.++++..||++|+||+||||||+|||+++||||+|+||.|+|. +++.+++++|+|||+||||+|||+|||+
T Consensus 23 ~~~~~~~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~ 102 (524)
T KOG0626|consen 23 SSVCPKTTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKE 102 (524)
T ss_pred cccCcccCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHH
Confidence 46778888899999999999999999999999999999999999999997 4777888999999999999999999999
Q ss_pred cCCCeeeecccccccccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHH
Q 040688 83 LNFDAYRFSISWSRIFPNGT--GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYA 160 (484)
Q Consensus 83 lG~~~~R~si~W~ri~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 160 (484)
||+++|||||+||||+|.|+ +.+|++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|+++++.|.+||
T Consensus 103 lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA 182 (524)
T KOG0626|consen 103 LGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYA 182 (524)
T ss_pred cCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHH
Confidence 99999999999999999997 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040688 161 DFCFKTFGDRVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQ 240 (484)
Q Consensus 161 ~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~ 240 (484)
+.||++|||+||+|+|||||++++..||..|..|||+|+....+|..|+|.++.|.|+||||+|||+||++||++++..|
T Consensus 183 ~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q 262 (524)
T KOG0626|consen 183 DLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQ 262 (524)
T ss_pred HHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999998899
Q ss_pred CceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhCCccEEEEec
Q 040688 241 KGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKGSIDYLGVNQ 320 (484)
Q Consensus 241 ~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNy 320 (484)
+|+|||+++..|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|++.+++|||.||++|.++|||+.||+||||
T Consensus 263 ~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNy 342 (524)
T KOG0626|consen 263 GGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINY 342 (524)
T ss_pred CCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeeh
Confidence 99999999999999999889999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccceeeeCCCCC-CCCCCCCCCCCCccccccCCC-CCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCC
Q 040688 321 YTTFYMFDPPWP-KPNITGYQNDWNVGFAYDRKG-VPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDP 398 (484)
Q Consensus 321 Y~~~~v~~~~~~-~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~ 398 (484)
|++.++++...+ ....+++..|..+.. ..++ .+.+..+.+.|..++|+||+++|++++++|+||||||||||+++.
T Consensus 343 Yts~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~ 420 (524)
T KOG0626|consen 343 YTSRYVKHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDL 420 (524)
T ss_pred hhhhhhhccCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcc
Confidence 999999986542 222344555554443 2222 345556667898999999999999999999999999999999983
Q ss_pred C--CCCCCCCCCchhHHHHHHHHHHHHHHHHH-cCCCEEEEeeccCcchhcccCCCccceeeEEecC-CCCccccChhHH
Q 040688 399 G--NVTFPQALHDATRVNYFRDYLSYLKKAVD-DGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDY-DNLKRYPKMSAY 474 (484)
Q Consensus 399 ~--~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~-dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~-~~~~R~pK~S~~ 474 (484)
. ..+.....+|..||+|++.||++|++||. +||||+|||+|||||||||..||+.||||++||| +.++|+||.|+.
T Consensus 421 ~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~ 500 (524)
T KOG0626|consen 421 DGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAK 500 (524)
T ss_pred cccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHH
Confidence 2 23456677999999999999999999995 9999999999999999999999999999999999 569999999999
Q ss_pred HHHHHHhhc
Q 040688 475 WFQKLLKRD 483 (484)
Q Consensus 475 ~yk~ii~~~ 483 (484)
||+++++++
T Consensus 501 wy~~fl~~~ 509 (524)
T KOG0626|consen 501 WYKKFLKGK 509 (524)
T ss_pred HHHHHHcCC
Confidence 999999864
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=5.3e-134 Score=1064.05 Aligned_cols=465 Identities=47% Similarity=0.910 Sum_probs=410.4
Q ss_pred CCCCCCCCCCCCCCCCCeeeeecccccccCCCCCCCCcCcccccccccCccCCCCCCCcCCccccchHHHHHHHHHcCCC
Q 040688 7 DGLDTAGMSRKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKAGNIASNATADLTVDQYHHYKEDIDIMAKLNFD 86 (484)
Q Consensus 7 ~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~ 86 (484)
.++....+++.+||++|+||+|||||||||++++||||+|+||.|++.+ ..+..++++||||||||+|||+|||+||++
T Consensus 19 ~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~ 97 (497)
T PLN02998 19 TAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAG-HSGVAAGNVACDQYHKYKEDVKLMADMGLE 97 (497)
T ss_pred cccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccC-cCCCCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 3445556788899999999999999999999999999999999998843 222247899999999999999999999999
Q ss_pred eeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 040688 87 AYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKT 166 (484)
Q Consensus 87 ~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~ 166 (484)
+|||||+||||+|+|+|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||++|+++
T Consensus 98 ~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~ 177 (497)
T PLN02998 98 AYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKE 177 (497)
T ss_pred eEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hcCcceEEEeecccchhhcccccCCCCCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE
Q 040688 167 FGDRVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMG-NCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIG 245 (484)
Q Consensus 167 ~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG 245 (484)
|||+|++|+|||||++++..||..|.+|||.+....+ .|..+++.++.++++||+++|||+|+++||++++..++++||
T Consensus 178 fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IG 257 (497)
T PLN02998 178 FGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVG 257 (497)
T ss_pred hcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEE
Confidence 9999999999999999999999999999996442111 366555556789999999999999999999986556789999
Q ss_pred EEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhCCccEEEEeccccee
Q 040688 246 ILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKGSIDYLGVNQYTTFY 325 (484)
Q Consensus 246 ~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNyY~~~~ 325 (484)
++++..+++|.+++++|++||++.+++.++||+||++.|+||+.|++.+++++|.||++|+++|++++||||||||++.+
T Consensus 258 i~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~ 337 (497)
T PLN02998 258 ISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALY 337 (497)
T ss_pred EEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred eeCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCC-CCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCC
Q 040688 326 MFDPPWP-KPNITGYQNDWNVGFAYDRKGVPVGPRA-NSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTF 403 (484)
Q Consensus 326 v~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~ 403 (484)
|+..... .+....+..+..... ...+..+ .++| +|+|+||+.+|+++++||++|||||||||+++.+
T Consensus 338 v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~---- 406 (497)
T PLN02998 338 VKDNSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH---- 406 (497)
T ss_pred cccCCCcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC----
Confidence 9753211 000011111100000 0111223 3688 6999999999999999999988999999999742
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCC--CCccccChhHHHHHHHHh
Q 040688 404 PQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYD--NLKRYPKMSAYWFQKLLK 481 (484)
Q Consensus 404 ~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~--~~~R~pK~S~~~yk~ii~ 481 (484)
+++++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++ +++|+||+|++|||++|+
T Consensus 407 ~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~ 486 (497)
T PLN02998 407 SSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLK 486 (497)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999999996 579999999999999998
Q ss_pred hc
Q 040688 482 RD 483 (484)
Q Consensus 482 ~~ 483 (484)
+.
T Consensus 487 ~~ 488 (497)
T PLN02998 487 GT 488 (497)
T ss_pred cc
Confidence 63
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=9.1e-134 Score=1063.63 Aligned_cols=458 Identities=41% Similarity=0.841 Sum_probs=409.1
Q ss_pred CCCCCCCCCCCCeeeeecccccccCCCCCCCCcCcccccccccCccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeec
Q 040688 12 AGMSRKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKAGNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFS 91 (484)
Q Consensus 12 ~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~s 91 (484)
..+++.+||++|+||+|||||||||++++||||+|+||.|++.. ++.++++||||||||+|||+|||+||+++||||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~---~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfS 99 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR---NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFS 99 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC---CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEe
Confidence 34677889999999999999999999999999999999998742 346889999999999999999999999999999
Q ss_pred ccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcc
Q 040688 92 ISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRV 171 (484)
Q Consensus 92 i~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v 171 (484)
|+||||+|+|.|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.|+++|||+|
T Consensus 100 IsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrV 179 (503)
T PLN02849 100 ISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHV 179 (503)
T ss_pred ccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999988899999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCc
Q 040688 172 KNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFV 251 (484)
Q Consensus 172 ~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~ 251 (484)
++|+|||||++++..||..|.+|||.+......|..+++.++.++++||+++|||+|++++|++++..++++||++++..
T Consensus 180 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~ 259 (503)
T PLN02849 180 KFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFAL 259 (503)
T ss_pred CEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECc
Confidence 99999999999999999999999996431111355444556789999999999999999999976445789999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhCCccEEEEecccceeeeCCCC
Q 040688 252 WYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDPPW 331 (484)
Q Consensus 252 ~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~~ 331 (484)
+++|.+++++|++||++.+++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++..|+....
T Consensus 260 ~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~ 339 (503)
T PLN02849 260 GFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKI 339 (503)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999975321
Q ss_pred CC--CCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCc
Q 040688 332 PK--PNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALHD 409 (484)
Q Consensus 332 ~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D 409 (484)
.. ...+.+.. ..+.+....+++|| +|+|+||+.+|++++++|++|||||||||++..+. .+++++|
T Consensus 340 ~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~--~~~~v~D 407 (503)
T PLN02849 340 KPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD--LQLQQKD 407 (503)
T ss_pred CCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC--CCCcccC
Confidence 10 00001100 00112223467899 69999999999999999999889999999998543 4568999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCCC--CccccChhHHHHHHHHhhcC
Q 040688 410 ATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYDN--LKRYPKMSAYWFQKLLKRDQ 484 (484)
Q Consensus 410 ~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~~--~~R~pK~S~~~yk~ii~~~~ 484 (484)
++||+||++||++|++||+|||||+||++|||+|||||..||++|||||+||++| ++|+||+|++|||++|+++.
T Consensus 408 ~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~ 484 (503)
T PLN02849 408 TPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNS 484 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999974 59999999999999998763
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=2.9e-133 Score=1060.08 Aligned_cols=456 Identities=41% Similarity=0.833 Sum_probs=406.2
Q ss_pred CCCCCCCCCCCeeeeecccccccCCCCCCCCcCcccccccccCccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecc
Q 040688 13 GMSRKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKAGNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSI 92 (484)
Q Consensus 13 ~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si 92 (484)
.|++.+||++|+||+|||||||||+++++|||+|+||.|++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~---~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC---YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec---cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 367788999999999999999999999999999999999873 23568899999999999999999999999999999
Q ss_pred cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcce
Q 040688 93 SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVK 172 (484)
Q Consensus 93 ~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~ 172 (484)
+||||+|+|+|.+|++||+||+++||+|+++||+|||||+|||+|+||+++||||+|++++++|++||+.|+++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccchhhcccccCCCCCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCc
Q 040688 173 NWFTFNEPRVIAALGFDNGINPPSRCSKGM-GNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFV 251 (484)
Q Consensus 173 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~ 251 (484)
+|+|||||++++..||..|.. ||.++... ..|.++++.++.++++||+++|||+||++||++++..++++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999985 87654211 1454444556789999999999999999999987666899999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhCCccEEEEecccceeeeCCCC
Q 040688 252 WYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDPPW 331 (484)
Q Consensus 252 ~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~~ 331 (484)
+++|++++++|++||++++++.++||+||++.|+||+.|++++++++|.||++|+++|++++||||||||++..|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred CC---CCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCC
Q 040688 332 PK---PNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALH 408 (484)
Q Consensus 332 ~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~ 408 (484)
.. ....++..+.+. ...+.++.+++|| +|+|+||+.+|++++++|++|||||||||++..+ ++.++
T Consensus 338 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~i~ 406 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGA------YIISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----DSTLQ 406 (504)
T ss_pred CCcccccCCCccccccc------ccCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC----CCccc
Confidence 10 000011000000 0012235678999 5999999999999999999988999999999742 57899
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCC--CCccccChhHHHHHHHHhhc
Q 040688 409 DATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYD--NLKRYPKMSAYWFQKLLKRD 483 (484)
Q Consensus 409 D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~--~~~R~pK~S~~~yk~ii~~~ 483 (484)
|++||+||++||++|++||+|||||+|||+|||+|||||..||++|||||+||++ +++|+||+|++||+++|++.
T Consensus 407 D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~ 483 (504)
T PLN02814 407 DTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGT 483 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999996 56999999999999999753
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-131 Score=1007.32 Aligned_cols=444 Identities=40% Similarity=0.791 Sum_probs=400.1
Q ss_pred CCCCCCCeeeeecccccccCCCCCCCCcCccccccccc---CccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeeccc
Q 040688 17 KSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA---GNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSIS 93 (484)
Q Consensus 17 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~---~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~ 93 (484)
.+||++||||+||||+|+|||+++||||+|+||.|++. +++..+.++++||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 47999999999999999999999999999999999993 455567889999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcce
Q 040688 94 WSRIFPNGTG-EVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVK 172 (484)
Q Consensus 94 W~ri~P~~~g-~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~ 172 (484)
||||+|++++ .+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCce
Q 040688 173 NWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFVW 252 (484)
Q Consensus 173 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~ 252 (484)
+|+||||||+++..||+.|.+||+..+ .+.++||+||+++|||+|++++|+.. ++.+||++++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 999999999999999999999998765 36889999999999999999999975 3349999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhc--CCCCCHHHHHHhhC-CccEEEEecccceeeeCC
Q 040688 253 YEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGER--LPKFTDAEVEMVKG-SIDYLGVNQYTTFYMFDP 329 (484)
Q Consensus 253 ~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~ik~-~~DfiGiNyY~~~~v~~~ 329 (484)
.||.+++|+|+.||+.++.+.+++|+||+++|+||..+.+.+.+. +|.++++|+++||. ++||||||||++..+...
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999875 79999999999986 599999999995444432
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCc
Q 040688 330 PWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALHD 409 (484)
Q Consensus 330 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D 409 (484)
..... ..+..+. .....-+|..+.+++|| +|||+|||.+|+++++||+ +||||||||++..+....++ |+|
T Consensus 308 ~~~~~--~~~~~~~----~~~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~-i~D 378 (460)
T COG2723 308 EPRYV--SGYGPGG----FFTSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDG-IND 378 (460)
T ss_pred cCCcC--Ccccccc----cccccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCC-cCc
Confidence 22110 0111000 00111134456679999 6999999999999999999 57999999999866665555 999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCCC-CccccChhHHHHHHHHhhc
Q 040688 410 ATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYDN-LKRYPKMSAYWFQKLLKRD 483 (484)
Q Consensus 410 ~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~~-~~R~pK~S~~~yk~ii~~~ 483 (484)
++||+||++||++|++||++||+|+||++||+|||+||++||++|||||+||++| ++|+||+|++|||++|+++
T Consensus 379 dyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sn 453 (460)
T COG2723 379 DYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESN 453 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988 7999999999999999876
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=5.6e-130 Score=1030.53 Aligned_cols=443 Identities=36% Similarity=0.652 Sum_probs=392.0
Q ss_pred CCCCCCCeeeeecccccccCCCCCCCCcCcccccccccCccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccccc
Q 040688 17 KSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKAGNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSISWSR 96 (484)
Q Consensus 17 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~r 96 (484)
.+||++|+||+|||||||||+++++|||+|+||.+++. .+..++++||||||||+|||+|||+||+++|||||+|||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~---~~~~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLED---NYWYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccC---CCCCCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 35999999999999999999999999999999998864 122367899999999999999999999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcceEEEe
Q 040688 97 IFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVKNWFT 176 (484)
Q Consensus 97 i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 176 (484)
|+|++.|.+|++||+||++||++|+++||+|||||+|||+|+||+++ |||+|++++++|++||+.||++||+ |++|+|
T Consensus 79 I~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 79 IFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 99998789999999999999999999999999999999999999987 9999999999999999999999998 999999
Q ss_pred ecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCceeecC
Q 040688 177 FNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFVWYEPL 256 (484)
Q Consensus 177 ~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~ 256 (484)
||||++++..||+.|.+|||.+.. .++.++++||+++|||+||++||++. ++++||++++..+++|.
T Consensus 157 ~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 223 (467)
T TIGR01233 157 FNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPY 223 (467)
T ss_pred ecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEEC
Confidence 999999999999999999996321 14689999999999999999999964 78999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhc------CCCCCHHHHHHh---hCCccEEEEecccceee
Q 040688 257 T-RSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGER------LPKFTDAEVEMV---KGSIDYLGVNQYTTFYM 326 (484)
Q Consensus 257 ~-~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~------lp~ft~~d~~~i---k~~~DfiGiNyY~~~~v 326 (484)
+ ++++|++||++.+.+.++||+||+++|+||+.|++.++.+ +|.||++|+++| ++++||||||||++.+|
T Consensus 224 ~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v 303 (467)
T TIGR01233 224 DPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWM 303 (467)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceee
Confidence 7 8999999999999999999999999999999999988632 377999999999 47899999999999999
Q ss_pred eCCCCCCC---CCC---C--CCCCCCccccccCCCCC-CCCCCCCCccccChHHHHHHHHHHHHHcCC-CeEEEecCCCC
Q 040688 327 FDPPWPKP---NIT---G--YQNDWNVGFAYDRKGVP-VGPRANSGWLYIVPWGIYKAITYVKERYQN-PTMILAENGMD 396 (484)
Q Consensus 327 ~~~~~~~~---~~~---~--~~~d~~~~~~~~~~~~~-~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~-ppI~ITENG~~ 396 (484)
+....... ... . .....+.. ....+ ..+.+++|| +|+|+||+.+|++++++|++ |||||||||++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~ 378 (467)
T TIGR01233 304 QAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLG 378 (467)
T ss_pred ccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCC
Confidence 75311100 000 0 00000000 00011 124577999 59999999999999999997 78999999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCCCCccccChhHHHH
Q 040688 397 DPGNVTFPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYDNLKRYPKMSAYWF 476 (484)
Q Consensus 397 ~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~~~~R~pK~S~~~y 476 (484)
..++.+ ++.++|++||+||++||++|++||+|||||+|||+|||+|||||..||++|||||+||++|++|+||+|++||
T Consensus 379 ~~d~~~-~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy 457 (467)
T TIGR01233 379 YKDEFV-DNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWY 457 (467)
T ss_pred CCCCCC-CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHHH
Confidence 855443 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 040688 477 QKLLKRD 483 (484)
Q Consensus 477 k~ii~~~ 483 (484)
|++|+++
T Consensus 458 ~~ii~~~ 464 (467)
T TIGR01233 458 KKLAETQ 464 (467)
T ss_pred HHHHHhc
Confidence 9999875
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=5.1e-130 Score=1033.23 Aligned_cols=447 Identities=35% Similarity=0.648 Sum_probs=393.0
Q ss_pred CCCCCCCeeeeecccccccCCCCCCCCcCccccccccc-CccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeeccccc
Q 040688 17 KSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA-GNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSISWS 95 (484)
Q Consensus 17 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ 95 (484)
.+||++|+||+|||||||||++++||||+|+||.|++. ++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW----FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC----CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 35999999999999999999999999999999999874 33 37899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcceEEE
Q 040688 96 RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVKNWF 175 (484)
Q Consensus 96 ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~ 175 (484)
||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998789999999999999999999999999999999999999987 9999999999999999999999999 99999
Q ss_pred eecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCceeec
Q 040688 176 TFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFVWYEP 255 (484)
Q Consensus 176 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P 255 (484)
|||||++++..||..|.+|||.+.. .+..++++||+++|||+||++||++. ++++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 9999999999999999999996431 14689999999999999999999864 7899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhh------cCCCCCHHHHHHhhC---CccEEEEeccccee
Q 040688 256 LT-RSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGE------RLPKFTDAEVEMVKG---SIDYLGVNQYTTFY 325 (484)
Q Consensus 256 ~~-~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~------~lp~ft~~d~~~ik~---~~DfiGiNyY~~~~ 325 (484)
.+ ++++|++||++.++|.++||+||++.|+||+.|++.++. ..+.||++|+++|++ ++||||||||++.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 98 899999999999999999999999999999999998752 124799999999974 58999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCccc--c---ccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCC-CeEEEecCCCCCCC
Q 040688 326 MFDPPWPKPNITGYQNDWNVGF--A---YDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQN-PTMILAENGMDDPG 399 (484)
Q Consensus 326 v~~~~~~~~~~~~~~~d~~~~~--~---~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~-ppI~ITENG~~~~~ 399 (484)
|+..............+..... . ......+..+.+++|| +|+|+||+.+|++++++|++ |||||||||++..+
T Consensus 304 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d 382 (469)
T PRK13511 304 MRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKD 382 (469)
T ss_pred eecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCC
Confidence 9753211000000000000000 0 0000012224567999 59999999999999999998 78999999999865
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCCCCccccChhHHHHHHH
Q 040688 400 NVTFPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYDNLKRYPKMSAYWFQKL 479 (484)
Q Consensus 400 ~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~~~~R~pK~S~~~yk~i 479 (484)
+.+.++.++|++||+||++||++|++||++||||+|||+|||+|||||..||++|||||+||++|++|+||+|++||+++
T Consensus 383 ~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~ 462 (469)
T PRK13511 383 EFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKL 462 (469)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHHHHHHH
Confidence 55556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 040688 480 LKRD 483 (484)
Q Consensus 480 i~~~ 483 (484)
|+++
T Consensus 463 i~~~ 466 (469)
T PRK13511 463 AETK 466 (469)
T ss_pred HHhC
Confidence 9876
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.3e-128 Score=1019.99 Aligned_cols=443 Identities=30% Similarity=0.528 Sum_probs=390.2
Q ss_pred CCCCCCCCeeeeecccccccCCCCCCCCcCccccccccc-CccC--C----------C--CCCCcCCccccchHHHHHHH
Q 040688 16 RKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA-GNIA--S----------N--ATADLTVDQYHHYKEDIDIM 80 (484)
Q Consensus 16 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~--~----------~--~~~~~a~d~y~ry~eDi~l~ 80 (484)
..+||++|+||+|||||||||++++||||+|+||.|++. +++. + + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 456999999999999999999999999999999999874 3331 1 1 25789999999999999999
Q ss_pred HHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHH
Q 040688 81 AKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADY 159 (484)
Q Consensus 81 ~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 159 (484)
|+||+++|||||+||||+|+|+ |.+|++||+||++||++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999974 569999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhcCcceEEEeecccchhhccccc-CCC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 040688 160 ADFCFKTFGDRVKNWFTFNEPRVIAALGFD-NGI-NPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQ 237 (484)
Q Consensus 160 a~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~ 237 (484)
|+.||++|||+|++|+|||||++++..||. .|. +|||... .++.++++||+|+|||+|+++||+..
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~~- 230 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEVD- 230 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999988876 454 3666422 25689999999999999999999853
Q ss_pred cCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhh--cCCCCCHHHHHHhh-CCcc
Q 040688 238 ETQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGE--RLPKFTDAEVEMVK-GSID 314 (484)
Q Consensus 238 ~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~--~lp~ft~~d~~~ik-~~~D 314 (484)
|+++||++++..+++|.+++++|++||++.+ +.++||+||++.|+||+.|++++++ .+|.||++|+++|+ +++|
T Consensus 231 --~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~D 307 (478)
T PRK09593 231 --PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVD 307 (478)
T ss_pred --CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 7899999999999999999999999999887 4578999999999999999999976 36889999999996 8999
Q ss_pred EEEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCC
Q 040688 315 YLGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENG 394 (484)
Q Consensus 315 fiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG 394 (484)
|||||||++.+|+..+.... ... . .. ..... .|..+.+++|| +|+|+||+.+|+++++||++ ||||||||
T Consensus 308 FlGiNyYt~~~v~~~~~~~~---~~~-~-~~-~~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG 377 (478)
T PRK09593 308 FISFSYYSSRVASGDPKVNE---KTA-G-NI-FASLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQK-PMFIVENG 377 (478)
T ss_pred EEEEecccCcccccCCCCCC---CCC-C-Cc-ccccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCC-CEEEEcCC
Confidence 99999999999975321100 000 0 00 00001 14445678999 59999999999999999998 59999999
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH-cCCCEEEEeeccCcchhcccCC-CccceeeEEecCC-----CCcc
Q 040688 395 MDDPGNVTFPQALHDATRVNYFRDYLSYLKKAVD-DGANLIGYFAWSLLDNFEWLSG-YTSRFGIVYVDYD-----NLKR 467 (484)
Q Consensus 395 ~~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~-dGv~V~GY~~WSl~Dn~eW~~G-y~~RfGL~~VD~~-----~~~R 467 (484)
++..++.+.++.++|++||+||++||++|++||+ +||||+|||+|||+|||||..| |++|||||+||++ |++|
T Consensus 378 ~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R 457 (478)
T PRK09593 378 LGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKR 457 (478)
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccce
Confidence 9986666677899999999999999999999995 9999999999999999999999 9999999999996 5799
Q ss_pred ccChhHHHHHHHHhhc
Q 040688 468 YPKMSAYWFQKLLKRD 483 (484)
Q Consensus 468 ~pK~S~~~yk~ii~~~ 483 (484)
+||+|++|||++|+++
T Consensus 458 ~pK~S~~wy~~ii~~~ 473 (478)
T PRK09593 458 SKKKSFDWYKKVIASN 473 (478)
T ss_pred ecccHHHHHHHHHHhC
Confidence 9999999999999875
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=7e-130 Score=1032.98 Aligned_cols=447 Identities=51% Similarity=0.969 Sum_probs=388.9
Q ss_pred CCCCCCCCeeeeecccccccCCCCCCCCcCccccccccc-CccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccc
Q 040688 16 RKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA-GNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSISW 94 (484)
Q Consensus 16 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W 94 (484)
+.+||++||||+|||||||||++++||||+|+||.|++. +++.+++++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 357999999999999999999999999999999999998 7777888899999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcceE
Q 040688 95 SRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVKN 173 (484)
Q Consensus 95 ~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~ 173 (484)
+||+|+| .|.+|++||+||+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 69999999999999999999999999999999999999998 599999999999999999999999999999
Q ss_pred EEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCcee
Q 040688 174 WFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFVWY 253 (484)
Q Consensus 174 w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~ 253 (484)
|+|||||++++..||+.|.+|||..+ .++.++++||+++|||+|+++||+++ ++++||++++..++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~ 226 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPF 226 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccccc
Confidence 99999999999999999999999654 36889999999999999999999986 79999999999999
Q ss_pred ecCCCCHHHH-HHHHHHHHHhhhccccccccCCCChhhHHHHhhc--CCCCCHHHHHHhhCCccEEEEecccceeeeCCC
Q 040688 254 EPLTRSKADN-LAAQRARDFHIGWFLHPITYGEYPRTMQEIVGER--LPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDPP 330 (484)
Q Consensus 254 ~P~~~~~~D~-~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~ 330 (484)
+|.+++++|. +||++.++++++||+||++.|+||..|+++++++ +|.||++|++.|++++||||||||++..|+..+
T Consensus 227 ~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 227 YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 9999988776 8999999999999999999999999999999988 999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCch
Q 040688 331 WPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALHDA 410 (484)
Q Consensus 331 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~ 410 (484)
..... +..... .... ....+.++.+++|| +++|+||+++|++++++|++|||||||||+++.++.+. +.++|+
T Consensus 307 ~~~~~-~~~~~~--~~~~--~~~~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~-~~v~D~ 379 (455)
T PF00232_consen 307 NPSSP-PSYDSD--APFG--QPYNPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDD-GKVDDD 379 (455)
T ss_dssp SSTSS-TTHEEE--ESEE--EECETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTT-SHBSHH
T ss_pred ccccc-ccccCC--cccc--ccccccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccc-cCcCcH
Confidence 32211 110000 0000 00023445788999 59999999999999999999999999999998554444 899999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEec-CCCCccccChhHHHHHHHHhhcC
Q 040688 411 TRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVD-YDNLKRYPKMSAYWFQKLLKRDQ 484 (484)
Q Consensus 411 ~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD-~~~~~R~pK~S~~~yk~ii~~~~ 484 (484)
+||+||++||.+|++||+|||||+||++|||+|||||..||++|||||+|| ++|++|+||+|++||+++|+++.
T Consensus 380 ~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng 454 (455)
T PF00232_consen 380 YRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNG 454 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999 58999999999999999999873
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.5e-128 Score=1017.27 Aligned_cols=441 Identities=29% Similarity=0.541 Sum_probs=385.0
Q ss_pred CCCCCCeeeeecccccccCCCCCCCCcCccccccc---cc--CccC----CCC--CCCcCCccccchHHHHHHHHHcCCC
Q 040688 18 SFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYV---KA--GNIA----SNA--TADLTVDQYHHYKEDIDIMAKLNFD 86 (484)
Q Consensus 18 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~~----~~~--~~~~a~d~y~ry~eDi~l~~~lG~~ 86 (484)
+||++|+||+|||||||||++++||||+|+||.|+ +. +++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 31 3332 222 5789999999999999999999999
Q ss_pred eeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHH
Q 040688 87 AYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFK 165 (484)
Q Consensus 87 ~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 165 (484)
+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|+++++.|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceEEEeecccchhhcc-----ccc-CCC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040688 166 TFGDRVKNWFTFNEPRVIAAL-----GFD-NGI-NPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQE 238 (484)
Q Consensus 166 ~~~~~v~~w~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~ 238 (484)
+|||+|++|+|||||++++.. ||. .|. +|||... ....++++||+++|||+|++++|++.
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998776 343 343 3555311 24579999999999999999999864
Q ss_pred CCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhc--CCCCCHHHHHHh-hCCccE
Q 040688 239 TQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGER--LPKFTDAEVEMV-KGSIDY 315 (484)
Q Consensus 239 ~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~i-k~~~Df 315 (484)
++++||++++..+++|.+++++|++||++++.+ +.||+||+++|+||+.|+++++++ .|.||++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 688999999999999999999999999998854 579999999999999999999874 478999999988 589999
Q ss_pred EEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCC
Q 040688 316 LGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGM 395 (484)
Q Consensus 316 iGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~ 395 (484)
||||||++.+|+.....+. .....+ .. ... .+..+.+++|| +|+|+||+.+|++++++|++ ||||||||+
T Consensus 308 lGiNyYts~~v~~~~~~~~--~~~~~~--~~--~~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItENG~ 377 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNPQ--LDYVET--RD--LVS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVENGF 377 (476)
T ss_pred EEEecccCcccccCCCCCC--CCcccc--cc--ccc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeCCc
Confidence 9999999999875211100 000000 00 001 13345677999 69999999999999999997 599999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH-HcCCCEEEEeeccCcchhcccCC-CccceeeEEecCC-----CCccc
Q 040688 396 DDPGNVTFPQALHDATRVNYFRDYLSYLKKAV-DDGANLIGYFAWSLLDNFEWLSG-YTSRFGIVYVDYD-----NLKRY 468 (484)
Q Consensus 396 ~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai-~dGv~V~GY~~WSl~Dn~eW~~G-y~~RfGL~~VD~~-----~~~R~ 468 (484)
+..++.+.++.++|++||+||++||++|++|| ++||||+|||+|||+|||||..| |++|||||+||++ |++|+
T Consensus 378 ~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~ 457 (476)
T PRK09589 378 GAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERS 457 (476)
T ss_pred ccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccc
Confidence 98666667788999999999999999999999 89999999999999999999999 9999999999996 57999
Q ss_pred cChhHHHHHHHHhhc
Q 040688 469 PKMSAYWFQKLLKRD 483 (484)
Q Consensus 469 pK~S~~~yk~ii~~~ 483 (484)
||+|++|||++|+++
T Consensus 458 pK~S~~wy~~~i~~n 472 (476)
T PRK09589 458 RKKSFYWYRDVIANN 472 (476)
T ss_pred cccHHHHHHHHHHhc
Confidence 999999999999875
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.4e-127 Score=1012.70 Aligned_cols=444 Identities=30% Similarity=0.556 Sum_probs=388.2
Q ss_pred CCCCCCCCCCeeeeecccccccCCCCCCCCcCccccccc---cc--CccC----CC--CCCCcCCccccchHHHHHHHHH
Q 040688 14 MSRKSFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYV---KA--GNIA----SN--ATADLTVDQYHHYKEDIDIMAK 82 (484)
Q Consensus 14 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~~----~~--~~~~~a~d~y~ry~eDi~l~~~ 82 (484)
|++.+||++|+||+|||||||||++++||||+|+||.|+ +. +++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 466789999999999999999999999999999999998 31 3331 22 2678999999999999999999
Q ss_pred cCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHH
Q 040688 83 LNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYAD 161 (484)
Q Consensus 83 lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 161 (484)
||+++|||||+|+||+|+|. +.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999975 56999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceEEEeecccchh-----hcccccC-CCC-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040688 162 FCFKTFGDRVKNWFTFNEPRVI-----AALGFDN-GIN-PPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFRE 234 (484)
Q Consensus 162 ~~~~~~~~~v~~w~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~ 234 (484)
+||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +..+.++++||+++|||+|++++|+
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6778874 765 44321 1245899999999999999999999
Q ss_pred HhccCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcC--CCCCHHHHHHh-hC
Q 040688 235 KYQETQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERL--PKFTDAEVEMV-KG 311 (484)
Q Consensus 235 ~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~l--p~ft~~d~~~i-k~ 311 (484)
+. ++++||++++..+++|.+++++|++||+++.. +..+|+||+++|+||+.|++.+++++ |.++++|+++| ++
T Consensus 230 ~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~ 305 (477)
T PRK15014 230 IN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG 305 (477)
T ss_pred hC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 75 68999999999999999999999999998763 22359999999999999999998764 78999999988 58
Q ss_pred CccEEEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEe
Q 040688 312 SIDYLGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILA 391 (484)
Q Consensus 312 ~~DfiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~IT 391 (484)
++||||||||+|.+|+.........+.+. . ... .+..+.+++|| +|+|+||+.+|+++++||++ |||||
T Consensus 306 ~~DFlGiNyYt~~~v~~~~~~~~~~~~~~-----~--~~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~It 374 (477)
T PRK15014 306 TCDYLGFSYYMTNAVKAEGGTGDAISGFE-----G--SVP--NPYVKASDWGW-QIDPVGLRYALCELYERYQK-PLFIV 374 (477)
T ss_pred CCCEEEEcceeCeeeccCCCCCCCccccc-----c--ccC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEe
Confidence 99999999999999975321100000000 0 001 13334567999 59999999999999999998 59999
Q ss_pred cCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH-cCCCEEEEeeccCcchhcccCC-CccceeeEEecCC-----C
Q 040688 392 ENGMDDPGNVTFPQALHDATRVNYFRDYLSYLKKAVD-DGANLIGYFAWSLLDNFEWLSG-YTSRFGIVYVDYD-----N 464 (484)
Q Consensus 392 ENG~~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~-dGv~V~GY~~WSl~Dn~eW~~G-y~~RfGL~~VD~~-----~ 464 (484)
|||++..++.+.+++++|++||+||++||++|++||+ |||||+|||+|||+|||||..| |++|||||+||++ +
T Consensus 375 ENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~ 454 (477)
T PRK15014 375 ENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGD 454 (477)
T ss_pred CCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcc
Confidence 9999986666678899999999999999999999995 9999999999999999999999 9999999999995 4
Q ss_pred CccccChhHHHHHHHHhhc
Q 040688 465 LKRYPKMSAYWFQKLLKRD 483 (484)
Q Consensus 465 ~~R~pK~S~~~yk~ii~~~ 483 (484)
++|+||+|++|||++|+++
T Consensus 455 ~~R~pK~S~~wy~~ii~~n 473 (477)
T PRK15014 455 MSRSRKKSFNWYKEVIASN 473 (477)
T ss_pred cceecccHHHHHHHHHHhc
Confidence 7999999999999999876
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.1e-126 Score=1004.29 Aligned_cols=441 Identities=29% Similarity=0.531 Sum_probs=391.9
Q ss_pred CCCCCCeeeeecccccccCCCCCCCCcCccccccccc-CccC------------CC--CCCCcCCccccchHHHHHHHHH
Q 040688 18 SFPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA-GNIA------------SN--ATADLTVDQYHHYKEDIDIMAK 82 (484)
Q Consensus 18 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~------------~~--~~~~~a~d~y~ry~eDi~l~~~ 82 (484)
+||++|+||+|||||||||++++||||+|+||.|++. +++. ++ .++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 4999999999999999999999999999999999884 4331 11 2678999999999999999999
Q ss_pred cCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHH
Q 040688 83 LNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYAD 161 (484)
Q Consensus 83 lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 161 (484)
||+++|||||+|+||+|+++ +.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceEEEeecccchhhccccc-CCC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040688 162 FCFKTFGDRVKNWFTFNEPRVIAALGFD-NGI-NPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQET 239 (484)
Q Consensus 162 ~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~ 239 (484)
+|+++|||+|++|+|||||++++..||. .|. +|||... ....++++||+++|||+|++++|++.
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 665 5887422 24579999999999999999999875
Q ss_pred CCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhc--CCCCCHHHHHHhhCCccEEE
Q 040688 240 QKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGER--LPKFTDAEVEMVKGSIDYLG 317 (484)
Q Consensus 240 ~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~--lp~ft~~d~~~ik~~~DfiG 317 (484)
++++||++++..+++|.+++++|++||++.+ +.++||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999998876 55789999999999999999999864 78999999999999999999
Q ss_pred EecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCC
Q 040688 318 VNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDD 397 (484)
Q Consensus 318 iNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~ 397 (484)
||||++.+|+....... .. .... ..... .|..+.+++|| +|+|+||+.+|+++++||++| |||||||++.
T Consensus 308 iNyYt~~~v~~~~~~~~--~~---~~~~-~~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~ 377 (474)
T PRK09852 308 FSYYASRCASAEMNANN--SS---AANV-VKSLR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQKP-LFLVENGLGA 377 (474)
T ss_pred EccccCeecccCCCCCC--CC---cCCc-eeccc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCCC-EEEeCCCCCC
Confidence 99999999975321000 00 0000 00001 24445678999 699999999999999999985 9999999998
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCC-CccceeeEEecCC-----CCccccCh
Q 040688 398 PGNVTFPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSG-YTSRFGIVYVDYD-----NLKRYPKM 471 (484)
Q Consensus 398 ~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~G-y~~RfGL~~VD~~-----~~~R~pK~ 471 (484)
.++.+.+++++|++||+||++||++|++||++||||+|||+|||||||||..| |++|||||+||++ |++|+||+
T Consensus 378 ~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~ 457 (474)
T PRK09852 378 KDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKK 457 (474)
T ss_pred CCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceeccc
Confidence 66666778999999999999999999999999999999999999999999999 9999999999996 57999999
Q ss_pred hHHHHHHHHhhc
Q 040688 472 SAYWFQKLLKRD 483 (484)
Q Consensus 472 S~~~yk~ii~~~ 483 (484)
|++|||++|+++
T Consensus 458 S~~wy~~ii~~n 469 (474)
T PRK09852 458 SFWWYKKVIASN 469 (474)
T ss_pred HHHHHHHHHHhC
Confidence 999999999876
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.6e-124 Score=977.99 Aligned_cols=426 Identities=42% Similarity=0.832 Sum_probs=391.5
Q ss_pred CCCCCeeeeecccccccCCCCCCCCcCccccccccc-CccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeeccccccc
Q 040688 19 FPEGFIFGTATSAYQVEGMTDKDGRGPCIWDPYVKA-GNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSISWSRI 97 (484)
Q Consensus 19 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri 97 (484)
||++|+||+|||||||||+++++|||+|+||.+++. +++.++.++++||||||||+|||+|||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999875 5555666889999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcceEEEee
Q 040688 98 FPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTF 177 (484)
Q Consensus 98 ~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 177 (484)
+|+|+|.+|+++++||+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++||++|++|+||
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997689999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred cccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCceeecCC
Q 040688 178 NEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFVWYEPLT 257 (484)
Q Consensus 178 NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~~ 257 (484)
|||++++..||..|.+||+.++ ....++++||+++|||+|+++||++. ++++||++++..+++|.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~-----------~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD-----------LRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCC
Confidence 9999999999999999998543 14578999999999999999999975 689999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhCCccEEEEecccceeeeCCCCCCCCCC
Q 040688 258 RSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDPPWPKPNIT 337 (484)
Q Consensus 258 ~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~~~~~~~~ 337 (484)
++++|++||++.+++.++||+||++.|+||+.|++.++ .+|.||++|+++|++++||||||||++.+|+...... +
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~ 301 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---A 301 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---C
Confidence 99999999999999999999999999999999999997 4799999999999999999999999999997632110 0
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCchhHHHHHH
Q 040688 338 GYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALHDATRVNYFR 417 (484)
Q Consensus 338 ~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~ 417 (484)
.. . .. .+..+.+++|| +|+|+||+.+|+++++||++|||||||||++..+..+ +++++|++||+||+
T Consensus 302 ~~-----~----~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~-~g~~~D~~Ri~yl~ 368 (427)
T TIGR03356 302 GF-----V----EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVT-DGEVHDPERIAYLR 368 (427)
T ss_pred Cc-----c----cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCc-CCCcCCHHHHHHHH
Confidence 00 0 00 12224567999 6999999999999999999988999999999865554 78899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCCCCccccChhHHHH
Q 040688 418 DYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYDNLKRYPKMSAYWF 476 (484)
Q Consensus 418 ~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~~~~R~pK~S~~~y 476 (484)
+||++|++||+|||||+||++|||+|||||..||++|||||+||++|++|+||+|++||
T Consensus 369 ~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~wy 427 (427)
T TIGR03356 369 DHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.63 E-value=1.1e-13 Score=136.22 Aligned_cols=251 Identities=15% Similarity=0.177 Sum_probs=160.1
Q ss_pred ccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcc--eEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcC
Q 040688 92 ISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITP--YANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGD 169 (484)
Q Consensus 92 i~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~ 169 (484)
+.|++|+|++ |.+|+ +..+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~~-G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPSR-GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCCC-CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhCC
Confidence 3699999999 99999 55778999999999995 4466788899998743 2 567889999999999999999
Q ss_pred cceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEec
Q 040688 170 RVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLD 249 (484)
Q Consensus 170 ~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~ 249 (484)
+|..|.++|||..... +|.+. ...+.+.-.-. -..|.++.|+.. |++++-+. .
T Consensus 73 ~i~~wdV~NE~~~~~~---------~~~~~------------~~w~~~~G~~~--i~~af~~ar~~~---P~a~l~~N-d 125 (254)
T smart00633 73 KIYAWDVVNEALHDNG---------SGLRR------------SVWYQILGEDY--IEKAFRYAREAD---PDAKLFYN-D 125 (254)
T ss_pred cceEEEEeeecccCCC---------ccccc------------chHHHhcChHH--HHHHHHHHHHhC---CCCEEEEe-c
Confidence 9999999999985210 01110 01111110011 124566667654 56665442 1
Q ss_pred CceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhCCccEEEEecccceeeeCC
Q 040688 250 FVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDP 329 (484)
Q Consensus 250 ~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~ 329 (484)
.....+ . . .......+ .+.+. .-..++|-||++.... .
T Consensus 126 y~~~~~---~-~---k~~~~~~~------------------v~~l~------------~~g~~iDgiGlQ~H~~----~- 163 (254)
T smart00633 126 YNTEEP---N-A---KRQAIYEL------------------VKKLK------------AKGVPIDGIGLQSHLS----L- 163 (254)
T ss_pred cCCcCc---c-H---HHHHHHHH------------------HHHHH------------HCCCccceeeeeeeec----C-
Confidence 111011 0 0 01111111 11111 1123479999953210 0
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCc
Q 040688 330 PWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALHD 409 (484)
Q Consensus 330 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D 409 (484)
. ...|..|...|+.+.+. +. ||+|||.++...+ ..
T Consensus 164 ~-----------------------------------~~~~~~~~~~l~~~~~~-g~-pi~iTE~dv~~~~--------~~ 198 (254)
T smart00633 164 G-----------------------------------SPNIAEIRAALDRFASL-GL-EIQITELDISGYP--------NP 198 (254)
T ss_pred C-----------------------------------CCCHHHHHHHHHHHHHc-CC-ceEEEEeecCCCC--------cH
Confidence 0 01245788999999765 65 6999999998741 11
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCCCCccccChhHHH
Q 040688 410 ATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYDNLKRYPKMSAYW 475 (484)
Q Consensus 410 ~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~~~~R~pK~S~~~ 475 (484)
..+.+++++.|..+.+- -.|.|.++|.+.|..+|..+ .+.||+.=|+ +||+++++
T Consensus 199 ~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~-----~~kpa~~~ 253 (254)
T smart00633 199 QAQAADYEEVFKACLAH----PAVTGVTVWGVTDKYSWLDG--GAPLLFDANY-----QPKPAYWA 253 (254)
T ss_pred HHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCCcccCC--CCceeECCCC-----CCChhhhc
Confidence 56666776666665542 27899999999999999765 5678875553 78888765
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.30 E-value=6.2e-12 Score=130.59 Aligned_cols=109 Identities=25% Similarity=0.397 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHcCCCeeee-cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhc-----
Q 040688 71 HHYKEDIDIMAKLNFDAYRF-SISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKY----- 144 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~----- 144 (484)
+.+++|+++|+++|+|.+|+ .++|++|||++ |.+|+ .++|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999996 57999999999 99999 6789999999999999999999999999998652
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhcC--cceEEEeecccchh
Q 040688 145 ----------NG-----LLSCDIVKDYADYADFCFKTFGD--RVKNWFTFNEPRVI 183 (484)
Q Consensus 145 ----------gg-----~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~ 183 (484)
|. ..+|...+.+.++++.++++|++ .|-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 21 33567788899999999999998 58899999998753
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.22 E-value=3.6e-09 Score=107.06 Aligned_cols=253 Identities=17% Similarity=0.186 Sum_probs=143.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecC---CCCcHHHHhhcCCCCC-
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYH---YDLPLALQDKYNGLLS- 149 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~gg~~~- 149 (484)
++=+++||+.|+|++|+-+ | +.|...|..|. +.-..+..+.+++||+.++++|- |.=|.--..+ ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCCC
Confidence 3458999999999999977 4 34443255565 67789999999999999999976 3334433333 57988
Q ss_pred --hhhHHHHHHHHHHHHHHhcC---cceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 040688 150 --CDIVKDYADYADFCFKTFGD---RVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILS 224 (484)
Q Consensus 150 --~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~A 224 (484)
.+..+.-.+|.+.+.+.+++ .++++.+=||.+.-. .||.|.. ..+...-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~--------------~~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKP--------------SNWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCT--------------T-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCc--------------cCHHHHHHHHHH
Confidence 57778888999999888754 688899999987422 2454432 123334455555
Q ss_pred HHHHHHHHHHHhccCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHH
Q 040688 225 HAAAVERFREKYQETQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDA 304 (484)
Q Consensus 225 ha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~ 304 (484)
-.+||+ +.. ++.+|.+.+... .|.... .||.+-+.
T Consensus 159 g~~AVr---~~~---p~~kV~lH~~~~---------~~~~~~--------~~~f~~l~---------------------- 193 (332)
T PF07745_consen 159 GIKAVR---EVD---PNIKVMLHLANG---------GDNDLY--------RWFFDNLK---------------------- 193 (332)
T ss_dssp HHHHHH---THS---STSEEEEEES-T---------TSHHHH--------HHHHHHHH----------------------
T ss_pred HHHHHH---hcC---CCCcEEEEECCC---------CchHHH--------HHHHHHHH----------------------
Confidence 555554 443 678887666532 111111 12222211
Q ss_pred HHHHhhCCccEEEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcC
Q 040688 305 EVEMVKGSIDYLGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQ 384 (484)
Q Consensus 305 d~~~ik~~~DfiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~ 384 (484)
......|+||++||.- | .-....|...|+.+.+||+
T Consensus 194 ---~~g~d~DviGlSyYP~----------------------------------------w-~~~l~~l~~~l~~l~~ry~ 229 (332)
T PF07745_consen 194 ---AAGVDFDVIGLSYYPF----------------------------------------W-HGTLEDLKNNLNDLASRYG 229 (332)
T ss_dssp ---HTTGG-SEEEEEE-ST----------------------------------------T-ST-HHHHHHHHHHHHHHHT
T ss_pred ---hcCCCcceEEEecCCC----------------------------------------C-cchHHHHHHHHHHHHHHhC
Confidence 1123569999999931 1 1134579999999999998
Q ss_pred CCeEEEecCCCCCC-CCCCCCCCCCch--------hHHHHHHHHHHHHHHHHHc--CCCEEEEeeccCcch
Q 040688 385 NPTMILAENGMDDP-GNVTFPQALHDA--------TRVNYFRDYLSYLKKAVDD--GANLIGYFAWSLLDN 444 (484)
Q Consensus 385 ~ppI~ITENG~~~~-~~~~~~~~i~D~--------~Ri~yl~~hL~~l~~Ai~d--Gv~V~GY~~WSl~Dn 444 (484)
. ||+|+|.|++.. ++.+..+-+... .-.+=-++.|..+.+++.+ +-..+|.|+|--.-.
T Consensus 230 K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 230 K-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp --EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred C-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccc
Confidence 6 799999998873 111111111100 0122234455666666654 679999999965433
No 17
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.15 E-value=1e-10 Score=115.70 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=91.0
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-cCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCC-CC
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIF-PNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGL-LS 149 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~-~~ 149 (484)
-.++|++.||++|+|++|+.|.|..++ |.+.+.++...++.++++|+.+.++||.++|+||+. |.|.... ++. ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 568999999999999999999998888 565456999999999999999999999999999875 7774332 233 33
Q ss_pred hhhHHHHHHHHHHHHHHhcC--cceEEEeecccchh
Q 040688 150 CDIVKDYADYADFCFKTFGD--RVKNWFTFNEPRVI 183 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~ 183 (484)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 45678899999999999944 78899999999864
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.14 E-value=1.3e-08 Score=103.46 Aligned_cols=267 Identities=19% Similarity=0.218 Sum_probs=157.6
Q ss_pred cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE--EecCCCCcHHHHhhcCCCCChh---hHHHHHHHHHHHHH
Q 040688 91 SISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA--NLYHYDLPLALQDKYNGLLSCD---IVKDYADYADFCFK 165 (484)
Q Consensus 91 si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~ 165 (484)
.+-|..++|.+ |.+|++ -.+++++.++++||++-- .+.|--.|.|+... .-+...+ ..+...+|.+.++.
T Consensus 43 ~~Kw~~~e~~~-g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~ 117 (320)
T PF00331_consen 43 EMKWGSIEPEP-GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVT 117 (320)
T ss_dssp TTSHHHHESBT-TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcCCC-CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHh
Confidence 47899999998 999994 578999999999999873 45566789999863 1233333 78899999999999
Q ss_pred HhcC--cceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 040688 166 TFGD--RVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGK 243 (484)
Q Consensus 166 ~~~~--~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~ 243 (484)
||++ +|..|=++|||..-.. .+-+.+ ....++++=. ---..|.+.-|+.. |+++
T Consensus 118 ~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r------------~~~~~~~lG~--~yi~~aF~~A~~~~---P~a~ 173 (320)
T PF00331_consen 118 RYKDKGRIYAWDVVNEAIDDDG-------NPGGLR------------DSPWYDALGP--DYIADAFRAAREAD---PNAK 173 (320)
T ss_dssp HTTTTTTESEEEEEES-B-TTS-------SSSSBC------------TSHHHHHHTT--CHHHHHHHHHHHHH---TTSE
T ss_pred HhccccceEEEEEeeecccCCC-------cccccc------------CChhhhcccH--hHHHHHHHHHHHhC---CCcE
Confidence 9994 8999999999864311 011111 1222332210 01123444445544 4555
Q ss_pred EEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhC-CccEEEEeccc
Q 040688 244 IGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKG-SIDYLGVNQYT 322 (484)
Q Consensus 244 IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~-~~DfiGiNyY~ 322 (484)
.=+..... +. . +++ ..+. .|.+.|.+ +| ++|=||++-..
T Consensus 174 L~~NDy~~--~~--~-------~k~-~~~~---------------~lv~~l~~-------------~gvpIdgIG~Q~H~ 213 (320)
T PF00331_consen 174 LFYNDYNI--ES--P-------AKR-DAYL---------------NLVKDLKA-------------RGVPIDGIGLQSHF 213 (320)
T ss_dssp EEEEESST--TS--T-------HHH-HHHH---------------HHHHHHHH-------------TTHCS-EEEEEEEE
T ss_pred EEeccccc--cc--h-------HHH-HHHH---------------HHHHHHHh-------------CCCccceechhhcc
Confidence 44322111 11 0 111 0010 01111111 12 47999996541
Q ss_pred ceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCC
Q 040688 323 TFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVT 402 (484)
Q Consensus 323 ~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~ 402 (484)
. . ...|..+...|+++.+ .+. ||.|||.-+.......
T Consensus 214 ~----~-------------------------------------~~~~~~i~~~l~~~~~-~Gl-~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 214 D----A-------------------------------------GYPPEQIWNALDRFAS-LGL-PIHITELDVRDDDNPP 250 (320)
T ss_dssp E----T-------------------------------------TSSHHHHHHHHHHHHT-TTS-EEEEEEEEEESSSTTS
T ss_pred C----C-------------------------------------CCCHHHHHHHHHHHHH-cCC-ceEEEeeeecCCCCCc
Confidence 1 0 0016789999999854 465 7999999887742110
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCC-ccceeeEEecCCCCccccChhHHHHHH
Q 040688 403 FPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGY-TSRFGIVYVDYDNLKRYPKMSAYWFQK 478 (484)
Q Consensus 403 ~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy-~~RfGL~~VD~~~~~R~pK~S~~~yk~ 478 (484)
. .-.+..+.+++++.+..+.+.-.. .|.|.+.|.+.|..+|-... ..+=+|+.-| -.||++++.+.+
T Consensus 251 ~--~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-----~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 251 D--AEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFDED-----YQPKPAYDAIVD 318 (320)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-TT-----SBB-HHHHHHHH
T ss_pred c--hHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeECCC-----cCCCHHHHHHHh
Confidence 0 123556777777777666554222 89999999999999997653 2344565444 489999888765
No 19
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.10 E-value=1.6e-08 Score=111.47 Aligned_cols=262 Identities=17% Similarity=0.205 Sum_probs=151.1
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhh-------
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDK------- 143 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~------- 143 (484)
..+..|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|+...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC------------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 4578899999999999999952 3322 267888999999777644322222222100
Q ss_pred cCCCC----ChhhHHHHHHHHHHHHHHhcC--cceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 040688 144 YNGLL----SCDIVKDYADYADFCFKTFGD--RVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIA 217 (484)
Q Consensus 144 ~gg~~----~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~ 217 (484)
...|. +++..+.+.+-++.+++++.. -|-.|.+.||+... . .....
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~--------------~--------------~~~~~ 427 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR--------------E--------------QGARE 427 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc--------------c--------------hhHHH
Confidence 01222 356778888889999999877 57899999996310 0 00011
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhc
Q 040688 218 AHNMILSHAAAVERFREKYQETQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGER 297 (484)
Q Consensus 218 ~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~ 297 (484)
.+...++++|+.. +.-.|..+.+... .+.
T Consensus 428 ------~~~~l~~~~k~~D---ptR~vt~~~~~~~--------------------------~~~---------------- 456 (604)
T PRK10150 428 ------YFAPLAELTRKLD---PTRPVTCVNVMFA--------------------------TPD---------------- 456 (604)
T ss_pred ------HHHHHHHHHHhhC---CCCceEEEecccC--------------------------Ccc----------------
Confidence 1223445566653 2223333221100 000
Q ss_pred CCCCCHHHHHHhhCCccEEEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHH
Q 040688 298 LPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAIT 377 (484)
Q Consensus 298 lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~ 377 (484)
...+...+|++|+|.|......... .. .+ -..|...+.
T Consensus 457 --------~~~~~~~~Dv~~~N~Y~~wy~~~~~----------------------------~~-----~~-~~~~~~~~~ 494 (604)
T PRK10150 457 --------TDTVSDLVDVLCLNRYYGWYVDSGD----------------------------LE-----TA-EKVLEKELL 494 (604)
T ss_pred --------cccccCcccEEEEcccceecCCCCC----------------------------HH-----HH-HHHHHHHHH
Confidence 0001223599999988653321100 00 00 012444555
Q ss_pred HHHHHcCCCeEEEecCCCCCCCCCC--CCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCC----
Q 040688 378 YVKERYQNPTMILAENGMDDPGNVT--FPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGY---- 451 (484)
Q Consensus 378 ~i~~rY~~ppI~ITENG~~~~~~~~--~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy---- 451 (484)
..++.|+ .||+|||.|.+...... .++.-..++...|+++|+. ++++--.|.|-|+|.++|-.. ..|.
T Consensus 495 ~~~~~~~-kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~----~~~~~p~~~G~~iW~~~D~~~-~~g~~~~~ 568 (604)
T PRK10150 495 AWQEKLH-KPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHR----VFDRVPAVVGEQVWNFADFAT-SQGILRVG 568 (604)
T ss_pred HHHHhcC-CCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHH----HHhcCCceEEEEEEeeeccCC-CCCCcccC
Confidence 5666674 47999999976521111 1122234566666666665 444445799999999999422 1121
Q ss_pred ccceeeEEecCCCCccccChhHHHHHHHHh
Q 040688 452 TSRFGIVYVDYDNLKRYPKMSAYWFQKLLK 481 (484)
Q Consensus 452 ~~RfGL~~VD~~~~~R~pK~S~~~yk~ii~ 481 (484)
....||+.-| |+||++++.||++.+
T Consensus 569 g~~~Gl~~~d-----r~~k~~~~~~k~~~~ 593 (604)
T PRK10150 569 GNKKGIFTRD-----RQPKSAAFLLKKRWT 593 (604)
T ss_pred CCcceeEcCC-----CCChHHHHHHHHHhh
Confidence 1467887665 899999999999875
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.08 E-value=4.6e-09 Score=112.78 Aligned_cols=292 Identities=21% Similarity=0.317 Sum_probs=141.5
Q ss_pred chHHHHHHHH-HcCCCeeeec--c--ccccccc-CCCC--CCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhh
Q 040688 72 HYKEDIDIMA-KLNFDAYRFS--I--SWSRIFP-NGTG--EVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDK 143 (484)
Q Consensus 72 ry~eDi~l~~-~lG~~~~R~s--i--~W~ri~P-~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 143 (484)
.+++.+..++ ++|++.+||- + +..-... ++.| .+|+ ...|.++|.|+++||+|+|.|-. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 3677777775 9999999986 2 2222222 2223 2799 77889999999999999999975 77776432
Q ss_pred ------cCCCC-ChhhHHHHHHHHHHHHHHh----cC-cce--EEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCC
Q 040688 144 ------YNGLL-SCDIVKDYADYADFCFKTF----GD-RVK--NWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGN 209 (484)
Q Consensus 144 ------~gg~~-~~~~~~~f~~ya~~~~~~~----~~-~v~--~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~ 209 (484)
+.|+. .|+..+.+.++++.+++|+ |. .|. +|.+||||++..+ |..|.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~------------ 175 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT------------ 175 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-------------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC------------
Confidence 11222 2466677777776666655 42 465 5689999996321 11110
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChh
Q 040688 210 SSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRT 289 (484)
Q Consensus 210 ~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~ 289 (484)
.+.| ..+. ..+++++|+.. |..+||-.-. ... .. ..+ ..|
T Consensus 176 --~~ey---~~ly---~~~~~~iK~~~---p~~~vGGp~~-----~~~-~~---~~~---~~~----------------- 215 (486)
T PF01229_consen 176 --PEEY---FELY---DATARAIKAVD---PELKVGGPAF-----AWA-YD---EWC---EDF----------------- 215 (486)
T ss_dssp --HHHH---HHHH---HHHHHHHHHH----TTSEEEEEEE-----ETT--T---HHH---HHH-----------------
T ss_pred --HHHH---HHHH---HHHHHHHHHhC---CCCcccCccc-----ccc-HH---HHH---HHH-----------------
Confidence 1112 2233 33555566654 6889986510 000 00 001 111
Q ss_pred hHHHHhhcCCCCCHHHHHHhhCCccEEEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccCh
Q 040688 290 MQEIVGERLPKFTDAEVEMVKGSIDYLGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVP 369 (484)
Q Consensus 290 ~~~~l~~~lp~ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P 369 (484)
.+++..+ +-.+|||.+..|......... +. ... ...+. ..+.|
T Consensus 216 -l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~-----------~~-~~~----------~~~~~--~~~~~ 258 (486)
T PF01229_consen 216 -LEFCKGN------------NCPLDFISFHSYGTDSAEDIN-----------EN-MYE----------RIEDS--RRLFP 258 (486)
T ss_dssp -HHHHHHC------------T---SEEEEEEE-BESESE-S-----------S--EEE----------EB--H--HHHHH
T ss_pred -HHHHhcC------------CCCCCEEEEEecccccccccc-----------hh-HHh----------hhhhH--HHHHH
Confidence 1111111 124699999999764321100 00 000 00000 01222
Q ss_pred HHHHHHHHHHHHH-cCCCeEEEecCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcc
Q 040688 370 WGIYKAITYVKER-YQNPTMILAENGMDDPGNVTFPQALHD-ATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEW 447 (484)
Q Consensus 370 ~Gl~~~l~~i~~r-Y~~ppI~ITENG~~~~~~~~~~~~i~D-~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW 447 (484)
.+..+.+.+.+. +++.|+++||-...... ...++| .++..|+... ++. ..|..+-++.+|++.|.||=
T Consensus 259 -~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~----~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~sD~Fee 328 (486)
T PF01229_consen 259 -ELKETRPIINDEADPNLPLYITEWNASISP----RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFSDRFEE 328 (486)
T ss_dssp -HHHHHHHHHHTSSSTT--EEEEEEES-SST----T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SBS---T
T ss_pred -HHHHHHHHHhhccCCCCceeecccccccCC----CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchhhhhhc
Confidence 244333333332 44558999996655432 234455 4555555333 222 24566777889999999984
Q ss_pred cCC----CccceeeEEecCCCCccccChhHHHHHHH
Q 040688 448 LSG----YTSRFGIVYVDYDNLKRYPKMSAYWFQKL 479 (484)
Q Consensus 448 ~~G----y~~RfGL~~VD~~~~~R~pK~S~~~yk~i 479 (484)
..- +-.-|||+..+ .++|+|++.|+-+
T Consensus 329 ~~~~~~pf~ggfGLlt~~-----gI~KPa~~A~~~L 359 (486)
T PF01229_consen 329 NGTPRKPFHGGFGLLTKL-----GIPKPAYYAFQLL 359 (486)
T ss_dssp TSS-SSSSSS-S-SEECC-----CEE-HHHHHHHHH
T ss_pred cCCCCCceecchhhhhcc-----CCCchHHHHHHHH
Confidence 221 45568999887 6999999988643
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.1e-06 Score=86.97 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=158.0
Q ss_pred cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE--EecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhc
Q 040688 91 SISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA--NLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 91 si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
-+-|.-|+|+. |.+|+++ -|.+.+-++++||..-- -+.|--.|.|+.. -.+..+...+...++...|++||.
T Consensus 66 emKwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYk 139 (345)
T COG3693 66 EMKWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYK 139 (345)
T ss_pred ccccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhcc
Confidence 45788899987 9999966 56899999999997543 2344566999864 247778999999999999999999
Q ss_pred CcceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEe
Q 040688 169 DRVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAAVERFREKYQETQKGKIGILL 248 (484)
Q Consensus 169 ~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~IG~~~ 248 (484)
+.|..|=+.|||-- ...++-.-.|--+. ...+. +. .|.+.-|+. .|+++.-+..
T Consensus 140 g~~~sWDVVNE~vd-d~g~~R~s~w~~~~------------~gpd~------I~----~aF~~Area---dP~AkL~~ND 193 (345)
T COG3693 140 GSVASWDVVNEAVD-DQGSLRRSAWYDGG------------TGPDY------IK----LAFHIAREA---DPDAKLVIND 193 (345)
T ss_pred CceeEEEecccccC-CCchhhhhhhhccC------------CccHH------HH----HHHHHHHhh---CCCceEEeec
Confidence 99999999999863 21111111111100 01121 21 233344553 3577665433
Q ss_pred cCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHHHHHHhhC-CccEEEEecccceeee
Q 040688 249 DFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDAEVEMVKG-SIDYLGVNQYTTFYMF 327 (484)
Q Consensus 249 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~d~~~ik~-~~DfiGiNyY~~~~v~ 327 (484)
-+ ....+ +.+.. +. -|++.|.+ || ++|=||++--- +
T Consensus 194 Y~-----ie~~~----~kr~~--~~---------------nlI~~Lke-------------kG~pIDgiG~QsH~----~ 230 (345)
T COG3693 194 YS-----IEGNP----AKRNY--VL---------------NLIEELKE-------------KGAPIDGIGIQSHF----S 230 (345)
T ss_pred cc-----ccCCh----HHHHH--HH---------------HHHHHHHH-------------CCCCccceeeeeee----c
Confidence 21 11111 11111 10 02222221 34 47989886431 0
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCC
Q 040688 328 DPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQAL 407 (484)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i 407 (484)
.+| ..++-++..+....+. +. ||+|||--|..... ..++-
T Consensus 231 ----------------------------------~~~--~~~~~~~~a~~~~~k~-Gl-~i~VTELD~~~~~P--~~~~p 270 (345)
T COG3693 231 ----------------------------------GDG--PSIEKMRAALLKFSKL-GL-PIYVTELDMSDYTP--DSGAP 270 (345)
T ss_pred ----------------------------------CCC--CCHHHHHHHHHHHhhc-CC-CceEEEeeeeccCC--CCccH
Confidence 011 1112233344444444 66 69999999887421 11222
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhcccCCCccceeeEEecCC---CCccccChhHHHHHHHHhh
Q 040688 408 HDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFEWLSGYTSRFGIVYVDYD---NLKRYPKMSAYWFQKLLKR 482 (484)
Q Consensus 408 ~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~eW~~Gy~~RfGL~~VD~~---~~~R~pK~S~~~yk~ii~~ 482 (484)
.+..+..+. ..+.-.......-+|.+.+.|.+.|+++|..|..+|++= ++- +-.=.||+..++..++.+.
T Consensus 271 ~~~~~~~~~--~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~---~rPl~~D~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 271 RLYLQKAAS--RAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDG---LRPLLFDDNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred HHHHHHHHH--HHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCC---CCCcccCCCCCcchHHHHHHHHhcC
Confidence 222222222 111122222456679999999999999999998888851 220 1124799999999887654
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=1.7e-07 Score=102.25 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=93.3
Q ss_pred chHHHHHHHHHcCCCeeeecc-cccccccCCCCCCChhhHHHHHHH-HHHHHHcCCcceEEe-cCCCCcHHHHhhc----
Q 040688 72 HYKEDIDIMAKLNFDAYRFSI-SWSRIFPNGTGEVNPLGVAYYNRL-IDYMLEKGITPYANL-YHYDLPLALQDKY---- 144 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~l~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~---- 144 (484)
-|++||++||++|+|++|.++ +|++++|+. |++|+. +.|.. |+.+.+.||..++.- .....|.|+..+|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 478999999999999999955 999999999 999996 66676 999999999999988 7788999998763
Q ss_pred -----------CCCCChhhHH-HHHHHHHH----HHHH-hcC--cceEEEeecccch-hhcccccCCCCC
Q 040688 145 -----------NGLLSCDIVK-DYADYADF----CFKT-FGD--RVKNWFTFNEPRV-IAALGFDNGINP 194 (484)
Q Consensus 145 -----------gg~~~~~~~~-~f~~ya~~----~~~~-~~~--~v~~w~t~NEp~~-~~~~gy~~G~~~ 194 (484)
|+|.+-.... .|.+|++. +.+| |++ .|-.|.+-||-.. .++..|+...|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 6664432222 35555555 7888 766 6889999999776 566666655554
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.21 E-value=1.5e-05 Score=80.32 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcC---
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYN--- 145 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g--- 145 (484)
....++.||.+||+||+|++|++- .|. + .++++.|-+.||-++.-+.....-.|-. .|
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 356889999999999999999943 222 2 2677889999998877653311111110 01
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhcC--cceEEEeeccc
Q 040688 146 -GLLSCDIVKDYADYADFCFKTFGD--RVKNWFTFNEP 180 (484)
Q Consensus 146 -g~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp 180 (484)
--.++...+.+.+-++.+++++.. -|-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013577888888888889999877 68999999997
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=5.9e-05 Score=79.34 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCccccch-----HHHHHHHHHcCCCeeeecccccccccCC--C-CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc
Q 040688 66 TVDQYHHY-----KEDIDIMAKLNFDAYRFSISWSRIFPNG--T-GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP 137 (484)
Q Consensus 66 a~d~y~ry-----~eDi~l~~~lG~~~~R~si~W~ri~P~~--~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 137 (484)
..-...+| ++|+..||+.|+|++|+-|.|..+.+.. . ...+...+.+.+++|+..++.||.+++.||+..-+
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 33445566 8999999999999999999866655532 1 22324445589999999999999999999986622
Q ss_pred HHHHhh--c-CCCC-ChhhHHHHHHHHHHHHHHhcC--cceEEEeecccch
Q 040688 138 LALQDK--Y-NGLL-SCDIVKDYADYADFCFKTFGD--RVKNWFTFNEPRV 182 (484)
Q Consensus 138 ~~l~~~--~-gg~~-~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~ 182 (484)
+--.+. + +.+. ..+.++.+.+-.+.++.+|++ .|-...++|||+.
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 211111 0 1122 356779999999999999988 3445678899985
No 25
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0099 Score=58.51 Aligned_cols=267 Identities=15% Similarity=0.258 Sum_probs=146.9
Q ss_pred HHHHHHHHcCCCeeeeccccccccc-CCC----CCCChhhHHHHHHHHHHHHHcCCcceEEecC---CCCcHHHHhhcCC
Q 040688 75 EDIDIMAKLNFDAYRFSISWSRIFP-NGT----GEVNPLGVAYYNRLIDYMLEKGITPYANLYH---YDLPLALQDKYNG 146 (484)
Q Consensus 75 eDi~l~~~lG~~~~R~si~W~ri~P-~~~----g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~gg 146 (484)
+=++.+|+.|+|.+|+-| |-.=.- ++. |.-|. +---.+-++.+++||++++..|. |.=|..-..+ -.
T Consensus 67 D~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kP-ka 141 (403)
T COG3867 67 DALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKP-KA 141 (403)
T ss_pred HHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCc-HH
Confidence 347999999999999966 211111 111 22333 22345667788999999999874 4446543333 45
Q ss_pred CCCh---hhHHHHHHHHHHHHHHhcC---cceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 040688 147 LLSC---DIVKDYADYADFCFKTFGD---RVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHN 220 (484)
Q Consensus 147 ~~~~---~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~ 220 (484)
|.+- ....+.-+|.+.+..++.+ ..+.-.+=||-+- |+ .||-|... -+.-+-.
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~--------------~f~k~a~ 200 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR--------------NFDKMAA 200 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc--------------ChHHHHH
Confidence 6653 3344555666766666644 6677778899762 22 26655321 1222334
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCC
Q 040688 221 MILSHAAAVERFREKYQETQKGKIGILLDFVWYEPLTRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPK 300 (484)
Q Consensus 221 ~l~Aha~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ 300 (484)
++.+ +++++|+. .+.-+|-+.+. .|..++. .+|+.|-+.+ +
T Consensus 201 L~n~---g~~avrev---~p~ikv~lHla----~g~~n~~-------------y~~~fd~ltk-------------~--- 241 (403)
T COG3867 201 LLNA---GIRAVREV---SPTIKVALHLA----EGENNSL-------------YRWIFDELTK-------------R--- 241 (403)
T ss_pred HHHH---Hhhhhhhc---CCCceEEEEec----CCCCCch-------------hhHHHHHHHH-------------c---
Confidence 4444 44455554 25666655443 2322210 1233332211 1
Q ss_pred CCHHHHHHhhCCccEEEEecccceeeeCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccChHHHHHHHHHHH
Q 040688 301 FTDAEVEMVKGSIDYLGVNQYTTFYMFDPPWPKPNITGYQNDWNVGFAYDRKGVPVGPRANSGWLYIVPWGIYKAITYVK 380 (484)
Q Consensus 301 ft~~d~~~ik~~~DfiGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~gw~~i~P~Gl~~~l~~i~ 380 (484)
.-..|.||.+||.= +. -.-..|...|..+.
T Consensus 242 ---------nvdfDVig~SyYpy--Wh---------------------------------------gtl~nL~~nl~dia 271 (403)
T COG3867 242 ---------NVDFDVIGSSYYPY--WH---------------------------------------GTLNNLTTNLNDIA 271 (403)
T ss_pred ---------CCCceEEeeecccc--cc---------------------------------------CcHHHHHhHHHHHH
Confidence 12469999999941 10 01125777899999
Q ss_pred HHcCCCeEEEecCCCCC--CC------CCCCCC-----CCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhc-
Q 040688 381 ERYQNPTMILAENGMDD--PG------NVTFPQ-----ALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFE- 446 (484)
Q Consensus 381 ~rY~~ppI~ITENG~~~--~~------~~~~~~-----~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~e- 446 (484)
.||+. .+||.|.+.+- ++ ..+..+ ++.-.-+..++++-|+.|... -+.+=.|.|+|---=+..
T Consensus 272 ~rY~K-~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~ 348 (403)
T COG3867 272 SRYHK-DVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVV 348 (403)
T ss_pred HHhcC-eEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceecc
Confidence 99997 59999988743 11 011111 112233556777666665542 455678999996543333
Q ss_pred ccCCCccceeeEE
Q 040688 447 WLSGYTSRFGIVY 459 (484)
Q Consensus 447 W~~Gy~~RfGL~~ 459 (484)
-.+|+...||.-|
T Consensus 349 ~g~gwat~~~~~y 361 (403)
T COG3867 349 LGSGWATSYAAKY 361 (403)
T ss_pred CCCccccchhhcc
Confidence 2334555555443
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.42 E-value=0.00069 Score=68.93 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=72.0
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecC--------CCCcHHHHhh
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYH--------YDLPLALQDK 143 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H--------~~~P~~l~~~ 143 (484)
.|++-++.||++|+|++-+-|.|.-.+|.+ |++|++|..=.+++|+.++++||-+++-.-- -++|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 478889999999999999999999999998 9999999888999999999999987764322 3489999875
Q ss_pred cCC---CCChhhHHHHHHHHHHHHHHhcC-------cceEEEeeccc
Q 040688 144 YNG---LLSCDIVKDYADYADFCFKTFGD-------RVKNWFTFNEP 180 (484)
Q Consensus 144 ~gg---~~~~~~~~~f~~ya~~~~~~~~~-------~v~~w~t~NEp 180 (484)
.+. -.++...++..+|.+.+++...+ -|-.-.+=||.
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 222 23345666666666666666543 24445555664
No 27
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.96 E-value=0.036 Score=64.95 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=62.0
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe----cCCCCcHHHHhhc
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL----YHYDLPLALQDKY 144 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL----~H~~~P~~l~~~~ 144 (484)
....++.||++||++|+|++|+| ..|.. ..+.+.|-+.||=++--. +.|.....+. +
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~--~ 413 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVGDIS--R 413 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCcccccccc--c
Confidence 35678999999999999999996 24443 166788999999766533 1111110000 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhcC--cceEEEeeccc
Q 040688 145 NGLLSCDIVKDYADYADFCFKTFGD--RVKNWFTFNEP 180 (484)
Q Consensus 145 gg~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp 180 (484)
...++...+.|.+=++.+++|.+. -|-.|..-||.
T Consensus 414 -~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 414 -ITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 012345566777778889999977 57899999994
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=96.92 E-value=0.0092 Score=67.08 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=85.7
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec--------CCCCcHHHHh
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY--------HYDLPLALQD 142 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~~ 142 (484)
..|++=|+.||++|+|++-.=|.|.-.||.+ |++|++|..=..++|+.+.+.||-+++-.- .-++|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 3577779999999999999999999999998 999999999999999999999988777432 2567999975
Q ss_pred hcCC----CCChhhHHHHHHHHHHHHHHhc---------CcceEEEeecccc
Q 040688 143 KYNG----LLSCDIVKDYADYADFCFKTFG---------DRVKNWFTFNEPR 181 (484)
Q Consensus 143 ~~gg----~~~~~~~~~f~~ya~~~~~~~~---------~~v~~w~t~NEp~ 181 (484)
. .| -.++.+.++-.+|.+.+++... +-|-...+=||-.
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 3 33 2356777777777777777763 2355566668853
No 29
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.69 E-value=0.0027 Score=65.61 Aligned_cols=107 Identities=16% Similarity=0.303 Sum_probs=81.2
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe-cC-----------CCCc
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL-YH-----------YDLP 137 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL-~H-----------~~~P 137 (484)
..-.+..++.||++|+..+-+.+=|--+|..+.+++|| ..|+++++.+++.|++..+.| +| .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 34788999999999999999999999999997699999 559999999999999998876 34 3689
Q ss_pred HHHHhh-----------cCC--------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 138 LALQDK-----------YNG--------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 138 ~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
.|+.+. .|. |....+++.+.+|-+-..++|.+.. -||-|..+
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 998743 122 4444559999999999999998765 56666543
No 30
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.62 E-value=0.013 Score=60.24 Aligned_cols=100 Identities=23% Similarity=0.357 Sum_probs=57.3
Q ss_pred HcCCCeeeecc---c------------cccc--ccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhc
Q 040688 82 KLNFDAYRFSI---S------------WSRI--FPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKY 144 (484)
Q Consensus 82 ~lG~~~~R~si---~------------W~ri--~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 144 (484)
.||++.+||.| + |.|. ++..+|.+|+.+=+-=+.++++++++|++-++ ++-+..|.|+....
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~NG 136 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKNG 136 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcCC
Confidence 47888888877 3 3333 22223778886655567799999999999766 66788888876531
Q ss_pred ---CC-----CCChhhHHHHHHHHHHHHHHhcC---cceEEEeecccch
Q 040688 145 ---NG-----LLSCDIVKDYADYADFCFKTFGD---RVKNWFTFNEPRV 182 (484)
Q Consensus 145 ---gg-----~~~~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~ 182 (484)
|+ =+.++..+.|+.|...|+++|.. .+++-.++|||+.
T Consensus 137 ~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 137 SASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 11 24568889999999999999933 7899999999983
No 31
>PLN02803 beta-amylase
Probab=96.57 E-value=0.01 Score=63.01 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=84.2
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC------------CCcH
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY------------DLPL 138 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~------------~~P~ 138 (484)
.-.+..++.+|++|+..+-+.+=|--+|..+.+++|| ..|+++++.+++.|++..+.|.-. -||.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 4477899999999999999999999999987799999 559999999999999987776432 4999
Q ss_pred HHHhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 139 ALQDK--------Y---NG----------------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 139 ~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
|+.+. | .| +..+.-++.|.+|-+-...+|.+... -||.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 98752 0 11 22334557788888888888877654 47777654
No 32
>PLN02161 beta-amylase
Probab=96.53 E-value=0.011 Score=62.42 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC------------
Q 040688 67 VDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY------------ 134 (484)
Q Consensus 67 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~------------ 134 (484)
..+..-.+..++.+|.+|+..+-+.+=|--+|..+.+++|| ..|+++++.+++.|++..+.|.-.
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 45666688899999999999999999999999987799999 559999999999999987776433
Q ss_pred CCcHHHHhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 135 DLPLALQDK--------Y---NG----------------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 135 ~~P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
-||.|+.+. | .| +..+.-++.|.+|-+-..++|.+... -||.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 0 12 22234557888888888888887654 47777654
No 33
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.53 E-value=0.015 Score=56.74 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCcchhc
Q 040688 370 WGIYKAITYVKERYQNPTMILAENGMDDPGNVTFPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLLDNFE 446 (484)
Q Consensus 370 ~Gl~~~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn~e 446 (484)
.+|...|+.++++|+. ||+|||-|+... ...-.++...+||++-+..| +.--.|.+|++.+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~k-PIWITEf~~~~~-----~~~~~~~~~~~fl~~~~~~l----d~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGK-PIWITEFGCWNG-----GSQGSDEQQASFLRQALPWL----DSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhCC-CEEEEeecccCC-----CCCCCHHHHHHHHHHHHHHH----hcCCCeeEEEecccccccC
Confidence 3678899999999996 699999998651 12225566666766655555 4446899999999554443
No 34
>PLN00197 beta-amylase; Provisional
Probab=96.49 E-value=0.012 Score=62.63 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=84.0
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC------------CCcHH
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY------------DLPLA 139 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~------------~~P~~ 139 (484)
-.+..++.+|++|+..+-+.+=|--+|..+.+++|| ..|+++++.+++.|++..+.|.-. -||.|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~W 204 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKW 204 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 478899999999999999999999999987799999 459999999999999988776432 59999
Q ss_pred HHhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 140 LQDK--------Y---NG----------------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 140 l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
+.+. | .| +..+.-++.|.+|-+-.-.+|.+... -||.|..+
T Consensus 205 V~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 205 VVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 8752 0 12 22233468888888888888887655 36777654
No 35
>PLN02801 beta-amylase
Probab=96.30 E-value=0.023 Score=60.11 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC------------CCcH
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY------------DLPL 138 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~------------~~P~ 138 (484)
.-.+..++.+|++|+..+-+.+=|--+|..+.+++|| ..|+++++.++++|++..+.|.-. -||+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 3478899999999999999999999999987799999 459999999999999987766432 5899
Q ss_pred HHHhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 139 ALQDK--------Y---NG----------------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 139 ~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
|+.+. | .| +..+.-++.+.+|-+-..++|.+...- -||.|..+
T Consensus 114 WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~V 183 (517)
T PLN02801 114 WVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIEV 183 (517)
T ss_pred HHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEEE
Confidence 98752 0 11 222345688889988888888775421 25556443
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.02 E-value=0.033 Score=55.96 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCCeeeecc--ccccc--------cc--CCC------CCCChhhHHHHHHHHHHHHHcCCcceEEecCC
Q 040688 73 YKEDIDIMAKLNFDAYRFSI--SWSRI--------FP--NGT------GEVNPLGVAYYNRLIDYMLEKGITPYANLYHY 134 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si--~W~ri--------~P--~~~------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~ 134 (484)
.+.-++..|+-|+|.+|+.+ .|... .| ..+ ..+|++=.++.+++|+.|.++||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447889999999999999 44433 11 110 2379999999999999999999999877665
Q ss_pred CCcHHHHhhcCCCCC---hhhHHHHHHHHHHHHHHhcCc-ceEEEeeccc
Q 040688 135 DLPLALQDKYNGLLS---CDIVKDYADYADFCFKTFGDR-VKNWFTFNEP 180 (484)
Q Consensus 135 ~~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~~~~-v~~w~t~NEp 180 (484)
+.| ..+ +.|-. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 111 g~~---~~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCP---YVP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---HH--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCc---ccc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 222 122 44432 334677888999999999997 4789999995
No 37
>PLN02905 beta-amylase
Probab=95.94 E-value=0.041 Score=59.37 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=84.0
Q ss_pred CccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC------------
Q 040688 67 VDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY------------ 134 (484)
Q Consensus 67 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~------------ 134 (484)
..+..-.+..|+.||++|+..+-+.+=|--+|..+.+++|| ..|+++++.+++.|++..+.|.-.
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 34556678899999999999999999999999987799999 559999999999999988776433
Q ss_pred CCcHHHHhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 135 DLPLALQDK--------Y---NG----------------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 135 ~~P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
-||.|+.+. | .| ...+.-++.|.+|.+-+..+|.+.+.- -||.|..+
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 432 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVEV 432 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 599998752 0 12 122445678888888888887764311 25555443
No 38
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.90 E-value=0.21 Score=50.12 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=50.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChh
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCD 151 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 151 (484)
-.+.||.+||+||+|++|+= -|-|.. + .+.-+..|.+.||=+++.|. .|.--..+...| ..=
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~---------n-Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~-~sw 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK---------N-HDECMSAFADAGIYVILDLN---TPNGSINRSDPA-PSW 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES----BTTBS--TTS------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC---------C-HHHHHHHHHhCCCEEEEecC---CCCccccCCCCc-CCC
Confidence 56899999999999999973 334443 2 57888999999999999995 452222221111 011
Q ss_pred hHHHHHHHHHHHHHHhcC--cceEEEeeccc
Q 040688 152 IVKDYADYADFCFKTFGD--RVKNWFTFNEP 180 (484)
Q Consensus 152 ~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp 180 (484)
....+.+|.+. ++.|.. .|-....=||-
T Consensus 116 ~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 116 NTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp -HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred CHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 23445555443 555554 45566666773
No 39
>PLN02705 beta-amylase
Probab=95.83 E-value=0.049 Score=58.60 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=81.9
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec-C-----------CCCc
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY-H-----------YDLP 137 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 137 (484)
-.-.+..++.||++||..+-+.+=|--+|..+.+++|| ..|+++++.+++.|++..+.|. | .-||
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP 343 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLP 343 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCC
Confidence 34578889999999999999999999999987799999 5599999999999999877664 3 2599
Q ss_pred HHHHhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 138 LALQDK--------Y---NG----------------LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 138 ~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
.|+.+. | .| ...+.-++.|.+|.+-+-++|.+.+.- -||.|..+
T Consensus 344 ~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 414 (681)
T PLN02705 344 QWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVEI 414 (681)
T ss_pred HHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEEe
Confidence 998752 0 11 122344578888888888888764311 25555443
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.91 E-value=0.35 Score=44.45 Aligned_cols=101 Identities=18% Similarity=0.348 Sum_probs=66.8
Q ss_pred chHHHHHHHHHcCCCeeeeccccccc-----ccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhc
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRI-----FPNGT--GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKY 144 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri-----~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 144 (484)
+|+++++.|+++|++.+=+- |+.. .|..- +.+.....+....+++++.+.||+++|.|+. -|.|...
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 69999999999999987432 4433 23220 1223345578999999999999999999974 4555542
Q ss_pred CCCCChh-hHHHHHHHHHHHHHHhcC--cceEEEeecccc
Q 040688 145 NGLLSCD-IVKDYADYADFCFKTFGD--RVKNWFTFNEPR 181 (484)
Q Consensus 145 gg~~~~~-~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~ 181 (484)
.+.+ -++.=..-++.+.++||. .+..|-+-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 222333456777888877 466677777755
No 41
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.34 Score=52.93 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=83.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe--------cCCCCcHHHHhh
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL--------YHYDLPLALQDK 143 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~~ 143 (484)
.|++=|+.+|++|+|++-.=+-|.-.+|.+ |++|++|..=..++|..+.++|+=+++-+ .|-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 477779999999999999999999999999 99999998888899999999998655432 345679888765
Q ss_pred cCC---CCChhhHHHHHHHHHHHHHHh-------cCcceEEEeecccc
Q 040688 144 YNG---LLSCDIVKDYADYADFCFKTF-------GDRVKNWFTFNEPR 181 (484)
Q Consensus 144 ~gg---~~~~~~~~~f~~ya~~~~~~~-------~~~v~~w~t~NEp~ 181 (484)
-|. =.|+.+..++.+|.+.++... |.=|-.-.+=||-.
T Consensus 129 pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 122 246778888888888888733 22344555667765
No 42
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.68 E-value=0.38 Score=56.55 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=63.7
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec---CCCCcHHHHhhcC
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY---HYDLPLALQDKYN 145 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~g 145 (484)
....++.||++||++|+|++|+| ..|.. + .+.+.|-+.||=++--.. |.-.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-----p-------~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-----P-------LWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----H-------HHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 45678999999999999999996 23432 2 556888899997665532 111110 0 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcC--cceEEEeecccc
Q 040688 146 GLLSCDIVKDYADYADFCFKTFGD--RVKNWFTFNEPR 181 (484)
Q Consensus 146 g~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~ 181 (484)
...+++..+.+.+=++.+++|.+. -|-.|...||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 123466677777778889999877 688999999974
No 43
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.49 E-value=0.33 Score=50.16 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=73.5
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCC-Ch-hhHHHHH
Q 040688 80 MAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLL-SC-DIVKDYA 157 (484)
Q Consensus 80 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~-~~-~~~~~f~ 157 (484)
-+|+|++.+|.---|.-++.. =-+++ .++++++|.+...|+.-+.+-+||+.+.-....|.+=. .+ ...+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468999999998888833332 34677 88999999999999666667888888876665333322 22 4789999
Q ss_pred HHHHHHHHHhcCc-c--eEEEeecccchh
Q 040688 158 DYADFCFKTFGDR-V--KNWFTFNEPRVI 183 (484)
Q Consensus 158 ~ya~~~~~~~~~~-v--~~w~t~NEp~~~ 183 (484)
.+++.|+.++|-+ | =....+||||..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcc
Confidence 9999999999962 3 344567999864
No 44
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=91.34 E-value=0.65 Score=44.99 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCcceEEecCCC--------------CcHHHHhh----------------cCC----CCChh---hH
Q 040688 111 AYYNRLIDYMLEKGITPYANLYHYD--------------LPLALQDK----------------YNG----LLSCD---IV 153 (484)
Q Consensus 111 ~~y~~~i~~l~~~gi~p~vtL~H~~--------------~P~~l~~~----------------~gg----~~~~~---~~ 153 (484)
+.++.+|+.-+++|..+|+||-=.+ .|.|-..+ .++ ..+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 6789999999999999999985311 12111100 011 11333 11
Q ss_pred HHHHHHHHHHHHHhcCc-----ceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 040688 154 KDYADYADFCFKTFGDR-----VKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHAAA 228 (484)
Q Consensus 154 ~~f~~ya~~~~~~~~~~-----v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a 228 (484)
.+-.+++..+..+||.. |++|..=|||.+-..- . .-++|- ...+.-+....++.|+|
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T-H-~dVHP~----------------~~t~~El~~r~i~~Aka 165 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST-H-RDVHPE----------------PVTYDELRDRSIEYAKA 165 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH-T-TTT--S-------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc-c-cccCCC----------------CCCHHHHHHHHHHHHHH
Confidence 34456677788888775 9999999999964210 0 011221 12344456677777887
Q ss_pred HHHHHHHhccCCCce-EEEEecCc
Q 040688 229 VERFREKYQETQKGK-IGILLDFV 251 (484)
Q Consensus 229 ~~~~~~~~~~~~~~~-IG~~~~~~ 251 (484)
+|..- |.++ +|.+.-..
T Consensus 166 iK~~D------P~a~v~GP~~wgw 183 (239)
T PF12891_consen 166 IKAAD------PDAKVFGPVEWGW 183 (239)
T ss_dssp HHHH-------TTSEEEEEEE-SH
T ss_pred HHhhC------CCCeEeechhhcc
Confidence 66543 5665 56664433
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.98 E-value=0.091 Score=55.12 Aligned_cols=109 Identities=15% Similarity=0.029 Sum_probs=79.8
Q ss_pred hHHHHHHHHHcCCCeeeecccc-cccccCCCCCCChhh-HHHHHHHHHHHHHcCCcceEEecC----CCCcHHHHhhcC-
Q 040688 73 YKEDIDIMAKLNFDAYRFSISW-SRIFPNGTGEVNPLG-VAYYNRLIDYMLEKGITPYANLYH----YDLPLALQDKYN- 145 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~n~~~-l~~y~~~i~~l~~~gi~p~vtL~H----~~~P~~l~~~~g- 145 (484)
-+.|++.|+.+|++..|++|-= ..+--. .|..|.+. +.+.+.+++.+...+|+.++||.- +.--.|-..=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~-~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK-EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh-hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4578999999999999999522 222212 27888877 899999999999999999999864 221122110001
Q ss_pred -----CCCChhhHHHHHHHHHHHHHHhcC--cceEEEeecccch
Q 040688 146 -----GLLSCDIVKDYADYADFCFKTFGD--RVKNWFTFNEPRV 182 (484)
Q Consensus 146 -----g~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~ 182 (484)
-...+.+..-|.+|++.+++.|+. .+--|+.-|||.+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 134567788899999999998887 5678999999766
No 46
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.87 E-value=0.97 Score=51.58 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=67.6
Q ss_pred CccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCC
Q 040688 67 VDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNG 146 (484)
Q Consensus 67 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 146 (484)
+-.+..++.||++||++|+|++|.| -.|.. ..+.+.|-+.||=++=-..+ +- +|.
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~-----~~---~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMI-----ET---HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecch-----hh---cCC
Confidence 4455669999999999999999999 44543 26677888899976654432 21 245
Q ss_pred CCChhhHHHHHHHHHHHHHHhcC--cceEEEeecccc
Q 040688 147 LLSCDIVKDYADYADFCFKTFGD--RVKNWFTFNEPR 181 (484)
Q Consensus 147 ~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~ 181 (484)
..+++..+....=++.+++|-+. -|-.|..=||..
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 56677777778888888998876 688999999955
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=86.70 E-value=4.3 Score=40.70 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=61.3
Q ss_pred ccchHHHHHHHHHcCCCeeeecc---cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhh-cC
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSI---SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDK-YN 145 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si---~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~-~g 145 (484)
..||.+--++++++|||..-+.= .-.. +..+-++-+.++-+.++..||++.+++. |..|.-+-.- ..
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~--------Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~lggL~Ta 126 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKL--------LTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIELGGLPTA 126 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGG--------GSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHTTS-S--
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhh--------cCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCcccCCcCcC
Confidence 46888889999999999876532 1111 2223345677899999999999999996 7778764210 02
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcC
Q 040688 146 GLLSCDIVKDYADYADFCFKTFGD 169 (484)
Q Consensus 146 g~~~~~~~~~f~~ya~~~~~~~~~ 169 (484)
..++++++.++.+=++.+.++..|
T Consensus 127 DPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 127 DPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999876
No 48
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=81.28 E-value=87 Score=34.04 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCeEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeccCc-c---hhcccCC
Q 040688 375 AITYVKERYQNPTMILAENGMDDPGNVTFPQALHDATRVNYFRDYLSYLKKAVDDGANLIGYFAWSLL-D---NFEWLSG 450 (484)
Q Consensus 375 ~l~~i~~rY~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V~GY~~WSl~-D---n~eW~~G 450 (484)
.|..++++|++..|+-||...+..... .....-.-.|. .++...+...+..| +.||..|.|+ | ..-|..+
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~-~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD-TSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS--SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc-cccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCC
Confidence 577899999988899999876652100 00011122333 23444455666666 6899999985 2 2234444
Q ss_pred CccceeeEEecCCCCccccChhHHHHHHHH
Q 040688 451 YTSRFGIVYVDYDNLKRYPKMSAYWFQKLL 480 (484)
Q Consensus 451 y~~RfGL~~VD~~~~~R~pK~S~~~yk~ii 480 (484)
+... .+-||.++.+-+..+.+|.++.+-
T Consensus 393 ~~d~--~iivd~~~~~~~~~p~yY~~gHfS 420 (496)
T PF02055_consen 393 FCDA--PIIVDSDTGEFYKQPEYYAMGHFS 420 (496)
T ss_dssp -B----SEEEEGGGTEEEE-HHHHHHHHHH
T ss_pred CCCc--eeEEEcCCCeEEEcHHHHHHHHHh
Confidence 4333 344787666666667788776653
No 49
>smart00642 Aamy Alpha-amylase domain.
Probab=80.73 E-value=4 Score=37.42 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.1
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccc--C--C-----CCCCC--hhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWSRIFP--N--G-----TGEVN--PLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P--~--~-----~g~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.+....+-++-+++||++++-++=-+..... . + --.++ ....+=++++|++|+++||++|+.+.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3555677788999999999988765544421 1 1 01111 12345589999999999999999873
No 50
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=80.14 E-value=1.5 Score=44.58 Aligned_cols=87 Identities=25% Similarity=0.484 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH--cCCCeEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccCcch
Q 040688 372 IYKAITYVKER--YQNPTMILAENGMDDPGNVTFPQALHDATRVNYFRDYLSYLKKAVDDGANL-----IGYFAWSLLDN 444 (484)
Q Consensus 372 l~~~l~~i~~r--Y~~ppI~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~dGv~V-----~GY~~WSl~Dn 444 (484)
+.+.+...-++ +++.+|+|||.||+..... +.-- ..- +.+.+.+.+.+.+|.+. .-+++-+++|-
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~---~a~~-~nA----~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE 283 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP---GATP-ENA----QAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE 283 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST---TCSH-HHH----HHHHHHHHHHCCGBBSSSBSS---EEES-SB--
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC---CCCc-chh----HHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC
Confidence 44555555454 4567899999999985321 1001 112 34455555555566664 35778888876
Q ss_pred hcccCC--CccceeeEEecCCCCccccChh
Q 040688 445 FEWLSG--YTSRFGIVYVDYDNLKRYPKMS 472 (484)
Q Consensus 445 ~eW~~G--y~~RfGL~~VD~~~~~R~pK~S 472 (484)
.|..| .++.|||++-| |+||=+
T Consensus 284 -~~K~~~~~E~~wGlf~~d-----~~~ky~ 307 (310)
T PF00332_consen 284 -NWKPGPEVERHWGLFYPD-----GTPKYD 307 (310)
T ss_dssp -TTSSSSGGGGG--SB-TT-----SSBSS-
T ss_pred -cCCCCCcccceeeeECCC-----CCeecC
Confidence 56554 68899999988 577644
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=78.11 E-value=10 Score=33.49 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHHHHcCCCeeeeccc--ccc-cccCCCCC--CChhhHHHHHHHHHHHHHcCCcceEEecC-CC------CcHHHHhh
Q 040688 76 DIDIMAKLNFDAYRFSIS--WSR-IFPNGTGE--VNPLGVAYYNRLIDYMLEKGITPYANLYH-YD------LPLALQDK 143 (484)
Q Consensus 76 Di~l~~~lG~~~~R~si~--W~r-i~P~~~g~--~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~------~P~~l~~~ 143 (484)
=++.||++|+++.-+... +-- -.|+..|. ...+ -+.+.++|++|+++||++++=+-+ || .|.|+...
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~~ 83 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVRD 83 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeEC
Confidence 368899999999998332 110 14443221 2223 378999999999999999985433 33 37777632
Q ss_pred cC------------CC----CChhhHHHHHHHHHHHHHHh
Q 040688 144 YN------------GL----LSCDIVKDYADYADFCFKTF 167 (484)
Q Consensus 144 ~g------------g~----~~~~~~~~f~~ya~~~~~~~ 167 (484)
-. || .|....+...+-++.++++|
T Consensus 84 ~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 84 ADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 11 12 23455666777777777777
No 52
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=70.93 E-value=18 Score=35.99 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=70.9
Q ss_pred CcccccccccCccCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHc
Q 040688 45 PCIWDPYVKAGNIASNATADLTVDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEK 123 (484)
Q Consensus 45 ~s~wd~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~ 123 (484)
.+.|+-|... ... ..+..+.-.+.++++=|+.++++|+..+=+.--|+.-..... .......-....++++-.+++
T Consensus 9 k~~W~Ww~~~-~~~--~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K 85 (273)
T PF10566_consen 9 KAAWSWWSMH-NGK--GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK 85 (273)
T ss_dssp EEEECTCCCC-TTS--SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT
T ss_pred eEEEeecccC-CCC--CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc
Confidence 4667766542 110 112234456788999999999999999999999987332211 111111113467999999999
Q ss_pred CCcceEEecCCC------CcHHHHhh---c---C---------CCCChhhHHHHHHHHHHHHHH
Q 040688 124 GITPYANLYHYD------LPLALQDK---Y---N---------GLLSCDIVKDYADYADFCFKT 166 (484)
Q Consensus 124 gi~p~vtL~H~~------~P~~l~~~---~---g---------g~~~~~~~~~f~~ya~~~~~~ 166 (484)
|+.+++-.+|-+ +=.-+.+. | | +-.+...++.+.+.++.++++
T Consensus 86 gVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 86 GVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp T-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999998855 21111111 1 1 134457788888888887765
No 53
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=70.85 E-value=3.4 Score=40.69 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC-C---------CCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGT-G---------EVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g---------~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.+-|+-+|+||++++-++=-+. .|... | ....-..+=+++||++|.++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4668899999999998875444 11111 1 01222455689999999999999999874
No 54
>PLN02361 alpha-amylase
Probab=70.59 E-value=9.3 Score=40.25 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=45.6
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccccCCCCC-----CCh--hhHHHHHHHHHHHHHcCCcceEEe
Q 040688 68 DQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGE-----VNP--LGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 68 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~-----~n~--~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.+|....+-++-+++||++++=++=...-.-+.|-.. +|. -..+=++++|++|.++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4888999999999999999997765443332222111 111 123448999999999999999865
No 55
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.46 E-value=18 Score=40.38 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=58.6
Q ss_pred ccchHHH-HHHHHHcCCCeeeeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe--
Q 040688 70 YHHYKED-IDIMAKLNFDAYRFSIS--------W-------SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL-- 131 (484)
Q Consensus 70 y~ry~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL-- 131 (484)
|.-..+. |+-+|+||++++=+.=- | -.|.|.- |. .+=+++||++|.++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4444567 48999999999865432 2 1222222 33 2348999999999999999984
Q ss_pred cCCCCcH----HHH--------h---h-cCC-------CCChhhHHHHHHHHHHHHHHhc
Q 040688 132 YHYDLPL----ALQ--------D---K-YNG-------LLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 132 ~H~~~P~----~l~--------~---~-~gg-------~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
.|..... ++. + . +.. +.|+++.+.+.+-++.-+++|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4542110 110 0 0 011 3467888888888888888875
No 56
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.17 E-value=16 Score=35.88 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhh
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDI 152 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 152 (484)
.+|++.+.+.|++.+|++++.+.+.-.. .+.-..+.++-..++++.++++|+++.+++.. .+. ..
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~---~~ 137 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------ASR---AD 137 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CCC---CC
Confidence 7899999999999999999888764332 13335567888999999999999987765521 222 23
Q ss_pred HHHHHHHHHHHHH
Q 040688 153 VKDYADYADFCFK 165 (484)
Q Consensus 153 ~~~f~~ya~~~~~ 165 (484)
++...+.++.+.+
T Consensus 138 ~~~~~~~~~~~~~ 150 (259)
T cd07939 138 PDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666544
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=66.62 E-value=21 Score=40.63 Aligned_cols=96 Identities=10% Similarity=0.144 Sum_probs=59.4
Q ss_pred chHHHH-HHHHHcCCCeeeeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe--cC
Q 040688 72 HYKEDI-DIMAKLNFDAYRFSIS--------W-------SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL--YH 133 (484)
Q Consensus 72 ry~eDi-~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL--~H 133 (484)
-..+.+ +-+|+||++++=+.=- | -.|.|.- |. .+=+++||++|.++||++|+.+ .|
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 334453 7789999999865432 2 1222222 33 3448899999999999999985 45
Q ss_pred CCC-----------cHHHHh-----hcC-------CCCChhhHHHHHHHHHHHHHHhcCcceEEE
Q 040688 134 YDL-----------PLALQD-----KYN-------GLLSCDIVKDYADYADFCFKTFGDRVKNWF 175 (484)
Q Consensus 134 ~~~-----------P~~l~~-----~~g-------g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~ 175 (484)
... |.+... .+. .+.++++.+.+.+-++.-+++|+ |+.|=
T Consensus 340 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R 402 (726)
T PRK05402 340 FPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLR 402 (726)
T ss_pred CCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 421 111110 011 24567888888888888888875 44443
No 58
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=65.75 E-value=44 Score=34.16 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=64.4
Q ss_pred CCcCCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHh
Q 040688 63 ADLTVDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQD 142 (484)
Q Consensus 63 ~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 142 (484)
+-+|.=||+ |+--+.-+ +.|+..+|+. | |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~a~-~~g~dkiRIN-------P---GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAM-AKGVAKVRIN-------P---GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHHHH-HhccCeEEEC-------C---CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 445666775 45444443 5599999863 3 33322 267899999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHH
Q 040688 143 KYNGLLSCDIVKDYADYADFCF 164 (484)
Q Consensus 143 ~~gg~~~~~~~~~f~~ya~~~~ 164 (484)
+||+-+.+.+++--.++++.|-
T Consensus 140 kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 9877666667776667766643
No 59
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=65.25 E-value=25 Score=34.74 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCCcCCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 62 TADLTVDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 62 ~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
+.|-+|-.-..|+.|+++++.-+. .+|. . | .|... ...+...+.+.|++.++.++
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~-------Y----~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRT-------Y----G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEE-------e----e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 334578888899999999999876 5553 1 2 34422 55888999999999999884
No 60
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=65.21 E-value=18 Score=36.05 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChh
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCD 151 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 151 (484)
-+.|++++++.|++.++++++=|...-... +.--.+.++-..++|+.++++|+++.+++-+|.-|- +.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 357999999999999999996555543321 344577888899999999999999999998766553 12
Q ss_pred hHHHHHHHHHHHHH
Q 040688 152 IVKDYADYADFCFK 165 (484)
Q Consensus 152 ~~~~f~~ya~~~~~ 165 (484)
.++.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 35677777777655
No 61
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=64.25 E-value=30 Score=35.09 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=64.5
Q ss_pred cchHHHHHHHHHcCCCeeeecccc-------cccccCCC---CC--CChhhHHHHHHHHHHHHHcCCcceEEe-cC----
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISW-------SRIFPNGT---GE--VNPLGVAYYNRLIDYMLEKGITPYANL-YH---- 133 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W-------~ri~P~~~---g~--~n~~~l~~y~~~i~~l~~~gi~p~vtL-~H---- 133 (484)
...++=++.|+++|+|++=+.+.+ |.++|... |. .+ .|-+.+..+|+++.++||+...-+ +.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCC-CCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 446778999999999987665543 33344210 11 12 245678899999999999988654 11
Q ss_pred ------CCCcHHHHhh-------c----CC--CCC---hhhHHHHHHHHHHHHHHhc
Q 040688 134 ------YDLPLALQDK-------Y----NG--LLS---CDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 134 ------~~~P~~l~~~-------~----gg--~~~---~~~~~~f~~ya~~~~~~~~ 168 (484)
-..|.|+... + |+ |+| |++.++..+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246665421 1 11 555 5888999999999999994
No 62
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.91 E-value=19 Score=37.25 Aligned_cols=93 Identities=10% Similarity=0.186 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC---CCCChhhHHHHHHHHHHHHHcCCcce-EEecCCCCcHHHHhhcCCCCC
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGT---GEVNPLGVAYYNRLIDYMLEKGITPY-ANLYHYDLPLALQDKYNGLLS 149 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~---g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~ 149 (484)
+|.++.|+++|++.+-+++ .-+-++-- |... ..+-..+.|+.+++.|+..+ +.|. +++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg----------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN----------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC-----------
Confidence 5889999999999555555 33333210 3221 13457789999999999744 5553 45553
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceEEEeecccchh
Q 040688 150 CDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 183 (484)
++.+.|.+-.+.+.+.=-+.|..+...-+|+..
T Consensus 163 -qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 -QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 234555555666554333556555545577644
No 63
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=63.86 E-value=25 Score=34.71 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.+|++.+.+.|++.+|+.++=|...-... +.--.+.++...++|..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999986554433321 333456788899999999999999999884
No 64
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=63.67 E-value=32 Score=34.61 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=50.4
Q ss_pred HHHHHcCCCeeeeccc--ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCC------
Q 040688 78 DIMAKLNFDAYRFSIS--WSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLS------ 149 (484)
Q Consensus 78 ~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~------ 149 (484)
+.+++.|++++-++.. -....|.-.|............-|..|+++|++++|.+ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5677889998887753 12222221011110012456778999999999999988 55443
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 040688 150 CDIVKDYADYADFCFKTFGD 169 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~ 169 (484)
...++.|++....+.+.|+=
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGL 105 (294)
T ss_pred cccHHHHHHHHHHHHHHhCC
Confidence 35677888877777888853
No 65
>PLN00196 alpha-amylase; Provisional
Probab=63.54 E-value=12 Score=39.68 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=44.3
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCC-----CCC---hhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTG-----EVN---PLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-----~~n---~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
+|....+.+.-+++||++++=++=.....-+.|-. .+| .-..+=+++||+++.++||++|+..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56677899999999999999887644333222211 122 1122448999999999999999965
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=62.35 E-value=25 Score=38.56 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHHcCCCeeeecc--------cc-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSI--------SW-------SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si--------~W-------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
+.-..+-|+-+|+||++++-+.= .| -.|.|.- |. ++=+++||++|.++||++|+.+-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 44456678999999999986542 12 1222221 33 34489999999999999999753
No 67
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=61.66 E-value=11 Score=41.24 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccc--------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWS--------------RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~--------------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
-+.-..+-++-+++||++++=++=-.. +|.|.- | ..+=++.+|+++.++||++|+.+.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-G-----t~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-G-----TMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344466778999999999986653222 222221 2 334589999999999999999863
No 68
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=61.34 E-value=22 Score=36.90 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=47.8
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.++||+.+.+.|++.+|++++-|.+.-... +.-..+.++-..+.|+.++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 589999999999999999987776643321 333455678888999999999999888774
No 69
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.59 E-value=25 Score=34.18 Aligned_cols=80 Identities=13% Similarity=-0.051 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhh
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDI 152 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 152 (484)
+++++++++.|++.+|++++-+.+.-.. .+.=....++-....|+.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999876422111 011122345668889999999999999998643333 234
Q ss_pred HHHHHHHHHHHHH
Q 040688 153 VKDYADYADFCFK 165 (484)
Q Consensus 153 ~~~f~~ya~~~~~ 165 (484)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666666554
No 70
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=60.11 E-value=29 Score=37.31 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=40.9
Q ss_pred cccchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc
Q 040688 69 QYHHYKED-----IDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP 137 (484)
Q Consensus 69 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 137 (484)
.|..|.+| ++.+.+.|++.+|+.++-+.+ +-....|+.++++|+....++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46678888 999999999999999866643 234566777788888777666543334
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=59.40 E-value=14 Score=39.90 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=42.2
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccc--------ccCCC---C------CCChh--hHHHHHHHHHHHHHcCCcce
Q 040688 68 DQYHHYKEDIDIMAKLNFDAYRFSISWSRI--------FPNGT---G------EVNPL--GVAYYNRLIDYMLEKGITPY 128 (484)
Q Consensus 68 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri--------~P~~~---g------~~n~~--~l~~y~~~i~~l~~~gi~p~ 128 (484)
+.|.-..+-++-+++||++++=++=...-. .|..- + .+|.. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 445556788999999999998776533321 11100 0 12211 23458999999999999999
Q ss_pred EEe
Q 040688 129 ANL 131 (484)
Q Consensus 129 vtL 131 (484)
+.+
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 976
No 72
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=58.53 E-value=14 Score=40.64 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCC-C-------CCC--hhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGT-G-------EVN--PLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g-------~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
..-..+.|+-+++||++++=++=-+.. |... | .+| ....+=+++||+++.++||++|+.+-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444568899999999999876543311 1110 1 011 11234589999999999999999763
No 73
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=58.24 E-value=32 Score=38.22 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=33.5
Q ss_pred cccchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 69 QYHHYKED-----IDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 69 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
-|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.++++|....+++.
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~ 145 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLS 145 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 36666666 999999999999999755543 2234455555555655444443
No 74
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.92 E-value=35 Score=36.49 Aligned_cols=111 Identities=23% Similarity=0.353 Sum_probs=71.4
Q ss_pred ccchHHHHHHHHHcCCCeeeec----ccccccccCC--------------------------C--CCCChhh----HHHH
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFS----ISWSRIFPNG--------------------------T--GEVNPLG----VAYY 113 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~s----i~W~ri~P~~--------------------------~--g~~n~~~----l~~y 113 (484)
+.+|+..|+.|+=.|+|..=.- +-|-+|+-.- . |....+- +--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6799999999999999954322 1233333221 0 3333221 1223
Q ss_pred HHHHHHHHHcCCcceEEecCCCCcHHHHhhc--------CCC---------------CChhhHHHHHHHHHHHHHHhcC-
Q 040688 114 NRLIDYMLEKGITPYANLYHYDLPLALQDKY--------NGL---------------LSCDIVKDYADYADFCFKTFGD- 169 (484)
Q Consensus 114 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg~---------------~~~~~~~~f~~ya~~~~~~~~~- 169 (484)
.++|+++++-||+|++--+---.|..|..-| +-| ..|-+++-=..|.+...+.||+
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 5899999999999999988878888887542 222 2345556666777888899996
Q ss_pred -cceEEEeeccc
Q 040688 170 -RVKNWFTFNEP 180 (484)
Q Consensus 170 -~v~~w~t~NEp 180 (484)
.+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 22233477883
No 75
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=57.78 E-value=5.8 Score=32.13 Aligned_cols=19 Identities=37% Similarity=0.744 Sum_probs=13.9
Q ss_pred HHHHhcC--cceEEEeecc-cc
Q 040688 163 CFKTFGD--RVKNWFTFNE-PR 181 (484)
Q Consensus 163 ~~~~~~~--~v~~w~t~NE-p~ 181 (484)
++.+||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 8999999999 66
No 76
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=55.31 E-value=52 Score=32.64 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeeeeccccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 74 KEDIDIMAKLNFDAYRFSISWS-RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
+|.+++|+++|++.+-++++-+ .+.+.-.+..+. +.+.+.++.++++||.+.+++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~---~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTY---DDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCH---HHHHHHHHHHHHcCCEEEEeE
Confidence 8999999999999999998821 133321122233 667789999999999865544
No 77
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=55.23 E-value=43 Score=35.13 Aligned_cols=50 Identities=12% Similarity=0.270 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.|++||++++++||+.|=+.|- .. ...+. +....+++.+.+.|.+.++++
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 5899999999999999988886 11 23444 456788899999998877766
No 78
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=55.11 E-value=36 Score=36.58 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=41.2
Q ss_pred cccchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc
Q 040688 69 QYHHYKED-----IDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP 137 (484)
Q Consensus 69 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 137 (484)
-|..|.+| ++++++-|++.+|..-....+ +-....|+.+++.|....+++.|=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~-------------~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP-------------RNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH-------------HHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 47788999 999999999999987643322 335577777788888777777765545
No 79
>PLN02784 alpha-amylase
Probab=53.87 E-value=28 Score=40.08 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=46.0
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccccCCCCC-----CCh--hhHHHHHHHHHHHHHcCCcceEEe
Q 040688 68 DQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGE-----VNP--LGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 68 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~-----~n~--~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.+|....+.++-+++||++++=++=.-.-..+.|-.. +|. -..+=++.+|+.|.++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5788899999999999999997766443333333111 111 123458999999999999999975
No 80
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.85 E-value=49 Score=35.37 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCeeeecc-cccc-cccCCCCCCChhhHHHHHHHHHHHHHcC-CcceEEecCCCCcHHHHhhcCCCCCh
Q 040688 74 KEDIDIMAKLNFDAYRFSI-SWSR-IFPNGTGEVNPLGVAYYNRLIDYMLEKG-ITPYANLYHYDLPLALQDKYNGLLSC 150 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si-~W~r-i~P~~~g~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~~~ 150 (484)
+|.+++|+++|+|.+.+++ +-+. +.-.- |... ..+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg------------ 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG------------ 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC------------
Confidence 6889999999999888888 4432 22111 3222 1244668899999999 66666665 56663
Q ss_pred hhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcccccCCCCC
Q 040688 151 DIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAALGFDNGINP 194 (484)
Q Consensus 151 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~ 194 (484)
++.+.|.+=.+.+.+-=-+.|..+...-||.......+..|..+
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12344444455555443467888887788876443333344443
No 81
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=53.80 E-value=60 Score=36.20 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=58.5
Q ss_pred cchHHHH-HHHHHcCCCeeee-ccccc--------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec--
Q 040688 71 HHYKEDI-DIMAKLNFDAYRF-SISWS--------------RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY-- 132 (484)
Q Consensus 71 ~ry~eDi-~l~~~lG~~~~R~-si~W~--------------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-- 132 (484)
.-..+.+ +-+|+||++++=+ .|..+ .+.|.- |. .+=+++||++|.++||++|+.+-
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3344564 8899999999987 33322 111111 22 23488999999999999999764
Q ss_pred CCCC-----------cHHHHhh-----cCC-------CCChhhHHHHHHHHHHHHHHhc
Q 040688 133 HYDL-----------PLALQDK-----YNG-------LLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 133 H~~~-----------P~~l~~~-----~gg-------~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
|... |.+.... +.. +.++++.+.+.+-++..+++|+
T Consensus 230 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 230 HFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred CcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1121100 011 2467888999999999998885
No 82
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.68 E-value=62 Score=32.92 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=50.1
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcH
Q 040688 77 IDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPL 138 (484)
Q Consensus 77 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 138 (484)
.+.+|++|.++..|=+=|. |+++..+|..-.++.+++.++|++++|-=++=+..++.+.
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~ 169 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI 169 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 6889999999999998885 6654568999999999999999999999888887666543
No 83
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.64 E-value=50 Score=32.64 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhH
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIV 153 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~ 153 (484)
.+||+.+.+.|++.+|+++..+ .++-..++++.++++|+++.+.+.+-. + ...
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5899999999999999987443 245678999999999999999886421 1 235
Q ss_pred HHHHHHHHHHHH
Q 040688 154 KDYADYADFCFK 165 (484)
Q Consensus 154 ~~f~~ya~~~~~ 165 (484)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 667777777655
No 84
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.34 E-value=46 Score=33.35 Aligned_cols=86 Identities=14% Similarity=0.119 Sum_probs=62.7
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecC-CCCcHHHHhhcCCCCC
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYH-YDLPLALQDKYNGLLS 149 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~ 149 (484)
+-.+|+++..+.|++.+++.++=+...-.. .+.-..+.++-..++|+.++++|+++.+++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 358999999999999999998665543221 14445567888999999999999999877764 4444 23333
Q ss_pred hhhHHHHHHHHHHHHHH
Q 040688 150 CDIVKDYADYADFCFKT 166 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~ 166 (484)
.++.+.++++.+.+.
T Consensus 153 --~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 --PPEAVADVAERLFAL 167 (287)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 367778888887654
No 85
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.17 E-value=77 Score=31.45 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=50.0
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhh
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDI 152 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 152 (484)
-++|+++..+.|++.+|+++..+. ++-....|+.++++|+++.+++.--+ + .+..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 478999999999999999876554 34567899999999999887663101 1 2334
Q ss_pred HHHHHHHHHHHHHH
Q 040688 153 VKDYADYADFCFKT 166 (484)
Q Consensus 153 ~~~f~~ya~~~~~~ 166 (484)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 56677777776554
No 86
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=52.03 E-value=19 Score=39.42 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=37.9
Q ss_pred chHHHHHHHHHcCCCeeeecccc--------------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISW--------------SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W--------------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
-..+-|+-+++||++++=++=-. .+|.|.- | ..+=++++|+++.++||++|+.+
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-G-----t~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-G-----TIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 34666899999999988665321 1222221 2 23458999999999999999975
No 87
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=51.94 E-value=75 Score=32.77 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHH
Q 040688 80 MAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADY 159 (484)
Q Consensus 80 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 159 (484)
..+.|+..+| |-| |.+-.. -+..+.+++.++++|+..=+..+|-.++.-+.++||+-+-+.+++--.++
T Consensus 97 a~~~G~~~iR-------INP---GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 97 AAEAGADALR-------INP---GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHHhCCCEEE-------ECC---CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 3467899985 544 434110 15688999999999999999999999999999998765666677776777
Q ss_pred HHHHH
Q 040688 160 ADFCF 164 (484)
Q Consensus 160 a~~~~ 164 (484)
++.|-
T Consensus 166 ~~~le 170 (360)
T PRK00366 166 AKILE 170 (360)
T ss_pred HHHHH
Confidence 76643
No 88
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=51.84 E-value=38 Score=35.13 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhh
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDI 152 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 152 (484)
++||+.+.+.|++.+|+.++-|.+.-.. .+.-..+.++-..+.|+.++++|+++.+++.. .+.. .
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~---~ 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRA---D 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCC---C
Confidence 8999999999999999999877653332 13334567888899999999999997766521 2223 3
Q ss_pred HHHHHHHHHHHHH
Q 040688 153 VKDYADYADFCFK 165 (484)
Q Consensus 153 ~~~f~~ya~~~~~ 165 (484)
++.+.++++.+.+
T Consensus 141 ~~~l~~~~~~~~~ 153 (365)
T TIGR02660 141 PDFLVELAEVAAE 153 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776654
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=51.83 E-value=24 Score=39.80 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=40.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccc-----------cC----CC-----CCCCh--hhHHHHHHHHHHHHHcCCcceEE
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIF-----------PN----GT-----GEVNP--LGVAYYNRLIDYMLEKGITPYAN 130 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~-----------P~----~~-----g~~n~--~~l~~y~~~i~~l~~~gi~p~vt 130 (484)
..+-|+-+++||++++=++=-...+. |. +- ..+|. -..+=++.||+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999998875443321 10 00 01122 23456899999999999999997
Q ss_pred ec
Q 040688 131 LY 132 (484)
Q Consensus 131 L~ 132 (484)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 90
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.81 E-value=66 Score=32.82 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=50.9
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcH
Q 040688 76 DIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPL 138 (484)
Q Consensus 76 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 138 (484)
+.+.+|++|.++..|=+=|. |+++-.+|..-.++.+++.++|++++|-=++=+..+|.+.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~ 171 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI 171 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc
Confidence 57889999999999998885 6654568899999999999999999999999887765543
No 91
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.72 E-value=56 Score=33.66 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=44.4
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 77 IDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 77 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
++.++++|.+++-+-+-|. |+....+|.+-+++..++.++|.+.||.-++-+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5779999999999999886 5532346888899999999999999999888653
No 92
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=49.79 E-value=88 Score=31.38 Aligned_cols=106 Identities=23% Similarity=0.207 Sum_probs=65.3
Q ss_pred hHHHHHHHHHcC--CCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCC---CcHHHHh--h--
Q 040688 73 YKEDIDIMAKLN--FDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYD---LPLALQD--K-- 143 (484)
Q Consensus 73 y~eDi~l~~~lG--~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~--~-- 143 (484)
.+|-++.+++.| ++++=+.+.|.+-.-.++-.+|.+..---..+|+.|+++|+++++.+.-+. .|..-+. +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 567788899999 455667777874321111233433333357999999999999888765332 2322111 0
Q ss_pred ---------c--------C---CCCChhhHHHHHHHHHHHHHHhcCcce-EEEeecccc
Q 040688 144 ---------Y--------N---GLLSCDIVKDYADYADFCFKTFGDRVK-NWFTFNEPR 181 (484)
Q Consensus 144 ---------~--------g---g~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~ 181 (484)
+ + .++||+..+.|.+..+.+.+ .| |+ +|+=+|||.
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 1 17889999998887776554 33 44 455578863
No 93
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=49.15 E-value=27 Score=39.85 Aligned_cols=94 Identities=11% Similarity=0.188 Sum_probs=56.8
Q ss_pred cccchHH-HHHHHHHcCCCeeeeccccc---------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 69 QYHHYKE-DIDIMAKLNFDAYRFSISWS---------------RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 69 ~y~ry~e-Di~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.|.-+.+ -|.-+|+||++++=+.=-.. .+.|.- |. .+=++++|++|.++||.+|+.+-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 3444333 48999999999987653222 111111 32 23488999999999999999876
Q ss_pred C--CCC-------------cHHHHhhcCC-----------CCChhhHHHHHHHHHHHHHHhc
Q 040688 133 H--YDL-------------PLALQDKYNG-----------LLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 133 H--~~~-------------P~~l~~~~gg-----------~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
+ ..- +.++...-.| ..++++.+.+.+=++.-+++|+
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5 110 1222210011 2345777777777777777763
No 94
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=48.90 E-value=50 Score=34.45 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
++||+.+.+.|++.+|++++-|.+.-.. .+.--.+.++-..+.|+.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999777663332 144456778889999999999999988874
No 95
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=48.89 E-value=55 Score=33.79 Aligned_cols=85 Identities=11% Similarity=-0.007 Sum_probs=63.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEEecC-CCCcHHHHhhcCCCCCh
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYANLYH-YDLPLALQDKYNGLLSC 150 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~~ 150 (484)
=.+|++.+.+.|++.+.+.++=|...-... +.--.+.++-+.++|+.++++|+++.+++.. |..|. .+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r--- 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGP--- 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCC---
Confidence 479999999999999999987666654431 4456778899999999999999999877753 44442 232
Q ss_pred hhHHHHHHHHHHHHHH
Q 040688 151 DIVKDYADYADFCFKT 166 (484)
Q Consensus 151 ~~~~~f~~ya~~~~~~ 166 (484)
-.++.+.++++.+.+.
T Consensus 194 ~~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 194 VPPSKVAYVAKELYDM 209 (347)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 3367777778776653
No 96
>PRK14706 glycogen branching enzyme; Provisional
Probab=46.97 E-value=58 Score=36.55 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=51.3
Q ss_pred HHHHHcCCCeeeecccccccccCC-C-C--CCC-------hhhHHHHHHHHHHHHHcCCcceEEec--CCC---------
Q 040688 78 DIMAKLNFDAYRFSISWSRIFPNG-T-G--EVN-------PLGVAYYNRLIDYMLEKGITPYANLY--HYD--------- 135 (484)
Q Consensus 78 ~l~~~lG~~~~R~si~W~ri~P~~-~-g--~~n-------~~~l~~y~~~i~~l~~~gi~p~vtL~--H~~--------- 135 (484)
+-+|+||++++-+.=- --.|.. . | ..+ ....+=++.||++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv--~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGV--MEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccch--hcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 5689999999765421 001111 0 0 001 11123488999999999999998753 421
Q ss_pred --CcHHHH-hhcCC-----------CCChhhHHHHHHHHHHHHHHhc
Q 040688 136 --LPLALQ-DKYNG-----------LLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 136 --~P~~l~-~~~gg-----------~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
.|.+.. +...| ..++++.+.+.+=|+.-++.|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 121100 00011 2257888888888888888885
No 97
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.84 E-value=72 Score=34.18 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP 137 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 137 (484)
++||+.+.+.|++.+|+.++-+.+. | ....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------n------~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------N------LETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------H------HHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5667999999999999998765541 2 4567888899998887777664445
No 98
>PRK10785 maltodextrin glucosidase; Provisional
Probab=46.72 E-value=31 Score=38.39 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCeeeecc-------------cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 73 YKEDIDIMAKLNFDAYRFSI-------------SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si-------------~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
..+-|+-+|+|||+++=++= ++-+|.|.= | ..+=+++||+++.++||++|+.+-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45668999999999987763 222233321 2 224488999999999999999763
No 99
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=45.62 E-value=14 Score=27.88 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=32.4
Q ss_pred cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC
Q 040688 95 SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY 134 (484)
Q Consensus 95 ~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~ 134 (484)
+++.|.. +.=-.++++...+++..|.++|| +++.|++-
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5778887 66778899999999999999999 78888763
No 100
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.38 E-value=94 Score=31.26 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=69.5
Q ss_pred hHHHHHHHHHcCC--CeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCC---cHHHH------
Q 040688 73 YKEDIDIMAKLNF--DAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDL---PLALQ------ 141 (484)
Q Consensus 73 y~eDi~l~~~lG~--~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~------ 141 (484)
..+-++.+++.|+ +++=+.+.|..-. ++-.+|.+..---..+|+.|+++|+++++.+.-+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4566788889995 4666777785431 222344433333578999999999999887654322 11111
Q ss_pred ---hhcC----------------CCCChhhHHHHHHHHHHHHHHhcCcceEEEeecccc
Q 040688 142 ---DKYN----------------GLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPR 181 (484)
Q Consensus 142 ---~~~g----------------g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 181 (484)
+.-| .++||+.++.|.+..+.+....|= --+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 188999999999998888877753 34667789997
No 101
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=44.91 E-value=1.1e+02 Score=31.50 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCcceEEecCCCCcH--------HHHh--h-----------c-----------CCCCChhhHHHHHHHHH
Q 040688 114 NRLIDYMLEKGITPYANLYHYDLPL--------ALQD--K-----------Y-----------NGLLSCDIVKDYADYAD 161 (484)
Q Consensus 114 ~~~i~~l~~~gi~p~vtL~H~~~P~--------~l~~--~-----------~-----------gg~~~~~~~~~f~~ya~ 161 (484)
.+||+.|++.|++.++.+.-+-.+. +-+. + + =.++||+.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 6899999999999888776543332 2110 0 0 13888999999888777
Q ss_pred HHHHHhcCcceEEEeecccchh
Q 040688 162 FCFKTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 162 ~~~~~~~~~v~~w~t~NEp~~~ 183 (484)
.+....|= --+|+=.|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 76665543 3567778999743
No 102
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=43.97 E-value=1.6e+02 Score=28.74 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.+|++.+++.|++.+|+.++-+.+. -..++++.++++|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999988776542 246788888999999888884
No 103
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=43.73 E-value=1.4e+02 Score=30.22 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCC-eeeecc-cc-ccccc-C-CCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCC
Q 040688 74 KEDIDIMAKLNFD-AYRFSI-SW-SRIFP-N-GTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLL 148 (484)
Q Consensus 74 ~eDi~l~~~lG~~-~~R~si-~W-~ri~P-~-~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 148 (484)
+|.+++|+++|++ .+-+++ +- .++.- . +.| .+. +-+.+.++.++++||.+.+.+. +++|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STF---EDFIRAAELARKYGAGVKAYLL-FKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCC--------CC
Confidence 7889999999988 466665 22 22221 1 112 233 5578999999999999777664 34442 12
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcccccCCCCCC
Q 040688 149 SCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAALGFDNGINPP 195 (484)
Q Consensus 149 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~P 195 (484)
-.+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23667777777777765 35777777666666654434455566654
No 104
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=43.65 E-value=73 Score=35.36 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc----HHHHhh------
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP----LALQDK------ 143 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~------ 143 (484)
++|++++++.|++.+|+..+.+.+ +-....|+.++++|+...+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 455899999999999999876654 224567778888888877776654455 221110
Q ss_pred ----------cCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 144 ----------YNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 144 ----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
-.|...|. ...+.++.+-++++ ..-...+-|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 13455554 34455555566665 2235666676654
No 105
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=43.37 E-value=1.2e+02 Score=31.28 Aligned_cols=95 Identities=13% Similarity=0.207 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EEecCCCCcHHHHhhcCCCCC
Q 040688 73 YKEDIDIMAKLNFDAYRFSI-SW-SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPY-ANLYHYDLPLALQDKYNGLLS 149 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~ 149 (484)
=+|.+++|+++|++.+-+++ += .++...-....+. +-..+.|+.+++.|+..+ +.+ =+++|. .+
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~---~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------qt 165 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNE---EDVYEAIANAKKAGFDNISIDL-IYALPG---------QT 165 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCcEEEee-ecCCCC---------CC
Confidence 36889999999999777777 22 2333221122333 557789999999999754 333 356663 22
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceEEEeecccchh
Q 040688 150 CDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 183 (484)
.+.|.+=++.+.+.=-+.|......-+|...
T Consensus 166 ---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 166 ---IEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred ---HHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 3344444444433222344444444566543
No 106
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=42.99 E-value=75 Score=36.51 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=61.8
Q ss_pred cCCCeeeeccc-ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecC---CCCcHHHHhh---------------
Q 040688 83 LNFDAYRFSIS-WSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYH---YDLPLALQDK--------------- 143 (484)
Q Consensus 83 lG~~~~R~si~-W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~--------------- 143 (484)
+=++++++++. |.+ .-+.-++|..-.---+.||+.|++.||+.++.+.. -|.|..-+..
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 44678999995 876 11211222221112349999999999999988765 2333332211
Q ss_pred ---------cCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcc
Q 040688 144 ---------YNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAAL 186 (484)
Q Consensus 144 ---------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 186 (484)
+=.++||+.+++|.+....-+..+| -.-+|.=+|||.+....
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0128899999999973333333333 35688889999977543
No 107
>PRK03705 glycogen debranching enzyme; Provisional
Probab=42.91 E-value=49 Score=37.29 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHcCCCeeeecc------------------------cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 77 IDIMAKLNFDAYRFSI------------------------SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 77 i~l~~~lG~~~~R~si------------------------~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
|+-+|+|||+++=+.= .+-.+.|.- |.-....++=+++||++|.++||++|+.+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 8899999999886532 112233321 221112355689999999999999999763
No 108
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.42 E-value=1.2e+02 Score=30.75 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCcceEEecCCC---CcHHHHhh-----------------------cCCCCChhhHHHHHHHHHHHHHH
Q 040688 113 YNRLIDYMLEKGITPYANLYHYD---LPLALQDK-----------------------YNGLLSCDIVKDYADYADFCFKT 166 (484)
Q Consensus 113 y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~~-----------------------~gg~~~~~~~~~f~~ya~~~~~~ 166 (484)
-.++|+.|+++|++.++.+.-+- .+.+-+-+ +=.|+||+.++.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 46899999999999888664331 12111100 01278888888877655544443
Q ss_pred hcCcceEEEeecccchhh
Q 040688 167 FGDRVKNWFTFNEPRVIA 184 (484)
Q Consensus 167 ~~~~v~~w~t~NEp~~~~ 184 (484)
.| ---+|+=+|||..+.
T Consensus 148 ~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 148 KG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred CC-CcEEEecCCCCCccC
Confidence 43 245777789998653
No 109
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=42.30 E-value=1.2e+02 Score=31.03 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=50.8
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcH
Q 040688 76 DIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPL 138 (484)
Q Consensus 76 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 138 (484)
+.+.+|++|.++..|=+=| -|+..-.+|..-.++.+++.++|++++|-=++=+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy---~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYY---DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEe---CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 3788999999999998887 45544568999999999999999999999999888776654
No 110
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=42.26 E-value=49 Score=37.42 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=39.0
Q ss_pred HHHHHHcCCCeeee----cccccccccCC------------------CCCCCh---hhHHHHHHHHHHHHHcCCcceEEe
Q 040688 77 IDIMAKLNFDAYRF----SISWSRIFPNG------------------TGEVNP---LGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 77 i~l~~~lG~~~~R~----si~W~ri~P~~------------------~g~~n~---~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
|+-+|+|||+++.+ ++...+..++. .-..+. ..+.=++.||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999985 34444443321 101133 256679999999999999999865
No 111
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=42.20 E-value=37 Score=39.27 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHcCCCeeeecc---------------cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSI---------------SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si---------------~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
....+-+.-+++||++++=+|= ++.+|.|.- |. .+=+++++++++++||.+|+.+
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-Gt-----~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-GG-----EEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 3467888999999999875543 344455543 32 3458999999999999999965
No 112
>PRK14705 glycogen branching enzyme; Provisional
Probab=42.13 E-value=93 Score=37.61 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=55.6
Q ss_pred HHH-HHHHHHcCCCeeeecc--------ccc-------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec--CCC
Q 040688 74 KED-IDIMAKLNFDAYRFSI--------SWS-------RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY--HYD 135 (484)
Q Consensus 74 ~eD-i~l~~~lG~~~~R~si--------~W~-------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--H~~ 135 (484)
.+. |+-+|+||++++=+.= +|- .+.|.- |. .+=++.+|++|.++||.+|+.+- |+.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry-Gt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF-GH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 345 6889999999985532 231 111111 33 33488999999999999999753 442
Q ss_pred CcHHHHhhc----------------CC-------CCChhhHHHHHHHHHHHHHHhc
Q 040688 136 LPLALQDKY----------------NG-------LLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 136 ~P~~l~~~~----------------gg-------~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
.=.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110000 01 3457888888888888888885
No 113
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.64 E-value=2.3e+02 Score=29.09 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.+|++.+.+.|++.+|+....+.. +-..+.|+.+++.|++..+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999998765443 1246889999999999988774
No 114
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.90 E-value=1.3e+02 Score=31.52 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCC-CChhhHHHHHHHHHHHHHcCCc-ceEEecCCCCcHHHHhhcCCCCC
Q 040688 74 KEDIDIMAKLNFDAYRFSI-SWS-RIFPNGTGE-VNPLGVAYYNRLIDYMLEKGIT-PYANLYHYDLPLALQDKYNGLLS 149 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~-~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~~~ 149 (484)
+|.++.|+++|++.+-+++ +-+ ++.-.- |. .+. +-..+.++.+++.|+. +.++|. +++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999766666 221 222111 22 232 3456889999999998 556665 56663
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcccccCCCC
Q 040688 150 CDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAALGFDNGIN 193 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~ 193 (484)
++.+.+.+=++.+.+-=-+.|......-||.......+..|.+
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2233444444444443345677777777887554444444443
No 115
>PLN02389 biotin synthase
Probab=40.86 E-value=1.4e+02 Score=31.16 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=43.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-cccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSR-IFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~r-i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.-+|.++.||+.|++.|-.+++=++ ++|.-...-++ +..-+.|+.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~---e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSY---DDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCH---HHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999885233 55553222243 6678999999999999877764
No 116
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=40.50 E-value=31 Score=41.74 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=39.2
Q ss_pred cccchH--HHHHHHHHcCCCeeeeccccc------------------------ccccCCCCCCChhhHHHHHHHHHHHHH
Q 040688 69 QYHHYK--EDIDIMAKLNFDAYRFSISWS------------------------RIFPNGTGEVNPLGVAYYNRLIDYMLE 122 (484)
Q Consensus 69 ~y~ry~--eDi~l~~~lG~~~~R~si~W~------------------------ri~P~~~g~~n~~~l~~y~~~i~~l~~ 122 (484)
-|.... +.|+-+|+|||+++=+.=--. .+.|.- |. ..++=+++||++|.+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~y-g~---~~~~efk~lV~~~H~ 258 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRL-AP---GGEEEFAQAIKEAQS 258 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhh-cc---CcHHHHHHHHHHHHH
Confidence 344444 668899999999986543221 111111 21 134558999999999
Q ss_pred cCCcceEEe
Q 040688 123 KGITPYANL 131 (484)
Q Consensus 123 ~gi~p~vtL 131 (484)
+||++|+.+
T Consensus 259 ~GI~VILDv 267 (1221)
T PRK14510 259 AGIAVILDV 267 (1221)
T ss_pred CCCEEEEEE
Confidence 999999964
No 117
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=40.11 E-value=62 Score=32.30 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
-++|++.+.+.|++.+-+.++=|..+-.. .+.--++.++.+.++|+.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47999999999999999888666554432 145567788999999999999999998888
No 118
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=39.89 E-value=1.2e+02 Score=31.06 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcceEEecCCCC-cHHHHhh--cCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcc
Q 040688 114 NRLIDYMLEKGITPYANLYHYDL-PLALQDK--YNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAAL 186 (484)
Q Consensus 114 ~~~i~~l~~~gi~p~vtL~H~~~-P~~l~~~--~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 186 (484)
++|++.|++.|++.++.+.-+-. -..+... +=.|+||+..+.|.+..+.+.+ .| -.-+|+=.|||.+++..
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccCC
Confidence 58999999999987775532110 0000000 1248889999988776655443 23 23478889999987543
No 119
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=39.86 E-value=1e+02 Score=31.56 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHH
Q 040688 75 EDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVK 154 (484)
Q Consensus 75 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 154 (484)
.-|++|.+.|++.+=.|+ +.|++ .+...++.+.++++.+.+.|+++||... |+-|.. -||. .+.++
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l~ 85 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNLS 85 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHHH
Confidence 347889999998776665 24444 2345788999999999999999999994 888775 3554 33455
Q ss_pred HHHHH
Q 040688 155 DYADY 159 (484)
Q Consensus 155 ~f~~y 159 (484)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55554
No 120
>PRK12568 glycogen branching enzyme; Provisional
Probab=39.65 E-value=37 Score=38.54 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=57.3
Q ss_pred ccchHHH-HHHHHHcCCCeeeec--------cccc-------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec-
Q 040688 70 YHHYKED-IDIMAKLNFDAYRFS--------ISWS-------RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY- 132 (484)
Q Consensus 70 y~ry~eD-i~l~~~lG~~~~R~s--------i~W~-------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~- 132 (484)
|.-..+. |+-+|+||++++=+. -+|- .+.|.- |. .+=++.+|++|.++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444445 688999999988543 2341 112221 33 34489999999999999999764
Q ss_pred -CCCC----------c-HHHH-h-h---cC-------CCCChhhHHHHHHHHHHHHHHhc
Q 040688 133 -HYDL----------P-LALQ-D-K---YN-------GLLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 133 -H~~~----------P-~~l~-~-~---~g-------g~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
|+.- + .+.. + + +. .+.++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 3221 1 0100 0 0 01 23457888888888888888875
No 121
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.61 E-value=1.7e+02 Score=29.53 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCC--eeeecccccccccCC----CCCCChhhHHHHHHHHHHHHHcCCcceEEecCC---CCcHHHHhh-
Q 040688 74 KEDIDIMAKLNFD--AYRFSISWSRIFPNG----TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY---DLPLALQDK- 143 (484)
Q Consensus 74 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~----~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~- 143 (484)
.+-++-+++.|+. ++=+++.|....... .-.+|.+-----.+||+.|+++|++.++.+.-+ +.|..-+-.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 4445556666654 455555564322100 011222111123589999999999988887654 333321110
Q ss_pred --c-------------------C---CCCChhhHHHHHHHHHHHHHHhcCcc-eEEEeecccchh
Q 040688 144 --Y-------------------N---GLLSCDIVKDYADYADFCFKTFGDRV-KNWFTFNEPRVI 183 (484)
Q Consensus 144 --~-------------------g---g~~~~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp~~~ 183 (484)
+ + .++||+..+.|.+..+.+ +..-| -+|+=+|||.++
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 0 377999999998877765 22334 457778999754
No 122
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=39.40 E-value=1.1e+02 Score=31.29 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCcceEEecCCCC-----cHHHHhh------------------------cCCCCChhhHHHHHHHHHHHH
Q 040688 114 NRLIDYMLEKGITPYANLYHYDL-----PLALQDK------------------------YNGLLSCDIVKDYADYADFCF 164 (484)
Q Consensus 114 ~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~------------------------~gg~~~~~~~~~f~~ya~~~~ 164 (484)
..||+.|++.|++.++.++.+-. |..-+.. +=.++||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999998887765432 2221111 013889999999999888776
Q ss_pred HHhc-CcceEEEeecccchhh
Q 040688 165 KTFG-DRVKNWFTFNEPRVIA 184 (484)
Q Consensus 165 ~~~~-~~v~~w~t~NEp~~~~ 184 (484)
...+ +-+-.|+=.|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5433 2356888899998753
No 123
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=39.09 E-value=73 Score=32.81 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCC-CChhhHHHHHHHHHHHHHcCCcce-EEecCCCCcH
Q 040688 74 KEDIDIMAKLNFDAYRFSI-SWS-RIFPNGTGE-VNPLGVAYYNRLIDYMLEKGITPY-ANLYHYDLPL 138 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~-~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~ 138 (484)
++.++.|+++|++.+.+++ +-+ ++...- |. .+. +-+.+.|+.+++.|+.++ +.| -+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~~---~~~~~ai~~l~~~G~~~v~~dl-i~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHSA---KNIAPAIETALKSGIENISLDL-MYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEec-cCCCCC
Confidence 6889999999999777776 332 233221 32 232 557789999999999855 444 355653
No 124
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.02 E-value=68 Score=30.95 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEE-ecCCCCc
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGT--GEVNPLGVAYYNRLIDYMLEKGITPYAN-LYHYDLP 137 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vt-L~H~~~P 137 (484)
-+++++=|+++++||.+.+++..... |... .......++..+++.+.+.+.||...+= ++|++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 45667778999999999998644321 1110 1122334466788888888999986663 3445444
No 125
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=38.60 E-value=1.2e+02 Score=30.28 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=55.6
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCC----cHHHHhhcCCCCChhh
Q 040688 77 IDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDL----PLALQDKYNGLLSCDI 152 (484)
Q Consensus 77 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~~~~gg~~~~~~ 152 (484)
.+.+++-.-+-=.++..|-.|-|++ .+... ...++++.++++|+++++++.-++- +.-+. .-..++..
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~---~~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAH---AVLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH---HHhcCHHH
Confidence 5666766666667888999998875 33321 2358999999999999999976541 11111 12345666
Q ss_pred HHHHHHHHHHHHHHhc
Q 040688 153 VKDYADYADFCFKTFG 168 (484)
Q Consensus 153 ~~~f~~ya~~~~~~~~ 168 (484)
++.|++=+-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777666666666664
No 126
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.13 E-value=87 Score=30.80 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=53.1
Q ss_pred HHHHHHHHHcC----CCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCC
Q 040688 74 KEDIDIMAKLN----FDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLL 148 (484)
Q Consensus 74 ~eDi~l~~~lG----~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 148 (484)
.+|++++.+.| ++.+|+.++.+.+.-.. .+.-..+.++-..++|+.+++.|++..+++.+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~- 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR- 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC-
Confidence 79999999999 99999988666553221 13223346777889999999999987655421 222
Q ss_pred ChhhHHHHHHHHHHHHH
Q 040688 149 SCDIVKDYADYADFCFK 165 (484)
Q Consensus 149 ~~~~~~~f~~ya~~~~~ 165 (484)
..++.+.+.++.+.+
T Consensus 140 --~~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 --TDLDFLIEVVEAAIE 154 (268)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 235666777777654
No 127
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=37.98 E-value=99 Score=30.69 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecC-CCCcHHHHhhcCCCCChh
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYH-YDLPLALQDKYNGLLSCD 151 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~~~ 151 (484)
++|++.+.+.|++.+++.++=|...-.. .+.-..+.++...+.++.++++|+++.+++.. |+.|. ++- -
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~---~ 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGE---V 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCC---C
Confidence 7899999999999999998666543221 13334667788999999999999999888763 44441 232 2
Q ss_pred hHHHHHHHHHHHHH
Q 040688 152 IVKDYADYADFCFK 165 (484)
Q Consensus 152 ~~~~f~~ya~~~~~ 165 (484)
.++.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 46677777777655
No 128
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=37.07 E-value=50 Score=38.05 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHcCCCeeeecccc---------------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISW---------------SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W---------------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
....+-++-+++||++++=+|=-+ .+|.|.- | +.+=++++++++.++||.+|+.+
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 346788899999999998665433 2333332 2 34558999999999999999975
No 129
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.77 E-value=81 Score=32.40 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhH
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIV 153 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~ 153 (484)
.+|++.+.+.|++.+|+....++. +--.+.|+.++++|++..+++..- + ...+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCCH
Confidence 589999999999999998866553 124789999999999999988631 1 2235
Q ss_pred HHHHHHHHHHHHHhc
Q 040688 154 KDYADYADFCFKTFG 168 (484)
Q Consensus 154 ~~f~~ya~~~~~~~~ 168 (484)
+.+.+.++.+. .+|
T Consensus 144 e~l~~~a~~~~-~~G 157 (337)
T PRK08195 144 EKLAEQAKLME-SYG 157 (337)
T ss_pred HHHHHHHHHHH-hCC
Confidence 66777777754 455
No 130
>PLN02960 alpha-amylase
Probab=35.26 E-value=56 Score=37.83 Aligned_cols=95 Identities=11% Similarity=0.195 Sum_probs=58.3
Q ss_pred ccccchHHH-HHHHHHcCCCeeeeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 68 DQYHHYKED-IDIMAKLNFDAYRFSIS--------W-------SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 68 d~y~ry~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
..|.-..+. |+-+|+||++++=+.=- | -.+.|.- |. .+=++.+|++|.++||.+|+.+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 345555544 89999999999766421 1 1111111 32 2348899999999999999987
Q ss_pred --cCCCC--c--HHHHh-----------h-----cC----CCCChhhHHHHHHHHHHHHHHhc
Q 040688 132 --YHYDL--P--LALQD-----------K-----YN----GLLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 132 --~H~~~--P--~~l~~-----------~-----~g----g~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
.|+.. + .+..+ . .| ...++++.+.+.+=++.-++.|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44321 1 11111 0 00 12346777888888888888875
No 131
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.26 E-value=1.1e+02 Score=31.36 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=55.4
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHH
Q 040688 80 MAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADY 159 (484)
Q Consensus 80 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 159 (484)
..+.|+..+|+ -| |.+-.+ +....+++.++++||..=+..+|-.+.+-+.++||+.+.+..++--.++
T Consensus 91 ~~~~g~~k~RI-------NP---GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~ 158 (361)
T COG0821 91 AAECGVDKVRI-------NP---GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEH 158 (361)
T ss_pred hhhcCcceEEE-------CC---cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHH
Confidence 34556666664 33 333222 3688999999999999999999999999999999988777777766666
Q ss_pred HHHHHH
Q 040688 160 ADFCFK 165 (484)
Q Consensus 160 a~~~~~ 165 (484)
|+.+-+
T Consensus 159 a~~~e~ 164 (361)
T COG0821 159 AELLEE 164 (361)
T ss_pred HHHHHH
Confidence 666543
No 132
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.42 E-value=44 Score=35.57 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCeeeecc------cccccccCCCCCC--ChhhHHHHHHHHHHHHHcCCcceEEe--cC
Q 040688 75 EDIDIMAKLNFDAYRFSI------SWSRIFPNGTGEV--NPLGVAYYNRLIDYMLEKGITPYANL--YH 133 (484)
Q Consensus 75 eDi~l~~~lG~~~~R~si------~W~ri~P~~~g~~--n~~~l~~y~~~i~~l~~~gi~p~vtL--~H 133 (484)
+-++.+++||++++=++= ++..--...--.+ ..-.++-.+++|+++.++||+.|+.+ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 668899999999984432 1111111100112 23355678999999999999999988 55
No 133
>PRK07094 biotin synthase; Provisional
Probab=34.17 E-value=1.2e+02 Score=30.44 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=40.4
Q ss_pred chHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 72 HYKEDIDIMAKLNFDAYRFSIS-W-SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.-+|.++.|+++|++.+-++++ - .++...-....+. +-+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~---~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSF---ENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCH---HHHHHHHHHHHHcCCeecceE
Confidence 4579999999999999998884 2 2444332112232 557889999999999865554
No 134
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.99 E-value=1e+02 Score=31.06 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcccccC
Q 040688 111 AYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAALGFDN 190 (484)
Q Consensus 111 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~ 190 (484)
+-+.+.++.++++||++.+++. +++|. +..+.+.+=++.+.+.=-+.|+.....-+|+.....-|..
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~ 229 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEK 229 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHc
Confidence 4567899999999999877765 35552 2346666666666655456788888888888665555556
Q ss_pred CCCCC
Q 040688 191 GINPP 195 (484)
Q Consensus 191 G~~~P 195 (484)
|.+.|
T Consensus 230 g~~~~ 234 (302)
T TIGR01212 230 GELKT 234 (302)
T ss_pred CCCCC
Confidence 66554
No 135
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.19 E-value=2.5e+02 Score=28.38 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCcceEEecCCCC-----cHHHHhh------------------------cCCCCChhhHHHHHHHHHHHH
Q 040688 114 NRLIDYMLEKGITPYANLYHYDL-----PLALQDK------------------------YNGLLSCDIVKDYADYADFCF 164 (484)
Q Consensus 114 ~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~------------------------~gg~~~~~~~~~f~~ya~~~~ 164 (484)
.+||+.|+++|++.++.+.-+-. |...+.. +=.|+||+.++.|.+..+.+.
T Consensus 67 ~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 67 KKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred HHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 58999999999997776644322 2221110 013799999999988887766
Q ss_pred HHhcCcceEEEeecccchh
Q 040688 165 KTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 165 ~~~~~~v~~w~t~NEp~~~ 183 (484)
...|= .-+|+=+|||..+
T Consensus 147 ~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 147 NSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hcCCC-ceEEeeCCCCccH
Confidence 55442 3477778998643
No 136
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=33.04 E-value=2.4e+02 Score=28.25 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCeee-eccc-c-----cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 73 YKEDIDIMAKLNFDAYR-FSIS-W-----SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
.+|.++.||++|++.+- .+.+ - .++.|.. ... +-+.+.|+.+++.||++..++.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~---~t~---~~~l~~i~~a~~~Gi~~~s~~i 166 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK---LSS---DEWLEVIKTAHRLGIPTTATMM 166 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC---CCH---HHHHHHHHHHHHcCCCceeeEE
Confidence 47889999999999885 2321 1 1222332 233 4467999999999999988764
No 137
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.50 E-value=1.1e+02 Score=30.63 Aligned_cols=64 Identities=23% Similarity=0.526 Sum_probs=46.7
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccc---cccC------------CCCCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 72 HYKEDIDIMAKLNFDAYRFSIS----WSR---IFPN------------GTGEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
..++-|++|+..++|.+.+-++ |+- ..|+ +.|.+.. +=++++++.++++||+.|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec-
Confidence 3567799999999999888776 522 1222 1145666 447799999999999998877
Q ss_pred CCCCcHHHH
Q 040688 133 HYDLPLALQ 141 (484)
Q Consensus 133 H~~~P~~l~ 141 (484)
|+|....
T Consensus 93 --D~PGH~~ 99 (303)
T cd02742 93 --DMPGHST 99 (303)
T ss_pred --cchHHHH
Confidence 7887653
No 138
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.48 E-value=1.1e+02 Score=29.65 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=45.4
Q ss_pred ecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhc
Q 040688 90 FSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 90 ~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
+.++|..+.++|.-.... .......+++.++++|+++++++..+....... -..++..++.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 555677776665311111 113467889999999999999997655432211 23466777777666655555553
No 139
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=32.37 E-value=50 Score=24.71 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=25.5
Q ss_pred HHHHHHHHH-cCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHH
Q 040688 114 NRLIDYMLE-KGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYA 160 (484)
Q Consensus 114 ~~~i~~l~~-~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 160 (484)
+++++.|.+ .||+|.+|. ..|-.-. ++.++.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~Le------keN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLLE------KENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHHH------HHHHHHHHHHh
Confidence 567777764 899999887 4665433 57778888773
No 140
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=32.20 E-value=1.6e+02 Score=30.89 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=58.3
Q ss_pred CcCCccccchHHHHHHHHHc-CCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EEecCCCCcHHHH
Q 040688 64 DLTVDQYHHYKEDIDIMAKL-NFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPY-ANLYHYDLPLALQ 141 (484)
Q Consensus 64 ~~a~d~y~ry~eDi~l~~~l-G~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~ 141 (484)
+.+.+-.++ .+|++.+..| ++. .++++. .|.. .. ..+.++.+.+.++||+.. ++...|..|.+
T Consensus 34 g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH----~~~d-~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~-- 98 (378)
T TIGR02635 34 GAARNVFEK-IEDAALVHRLTGIC-PTVALH----IPWD-RV------EDYEELARYAEELGLKIGAINPNLFQDDDY-- 98 (378)
T ss_pred CCCCCHHHH-HHHHHHHHhhcCCC-Cceeec----cCCc-cc------cCHHHHHHHHHHcCCceeeeeCCccCCccc--
Confidence 344444444 6788888888 555 666662 2222 11 226788888999999987 77776666654
Q ss_pred hhcCCCCCh--hhHHHHHHHHHHHH---HHhcC
Q 040688 142 DKYNGLLSC--DIVKDYADYADFCF---KTFGD 169 (484)
Q Consensus 142 ~~~gg~~~~--~~~~~f~~ya~~~~---~~~~~ 169 (484)
++|.++|+ ++++.-.++++.|. +.+|.
T Consensus 99 -~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 -KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34778876 66677777776664 56666
No 141
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=32.18 E-value=2.6e+02 Score=25.05 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=38.3
Q ss_pred chHHHHHHHHHcCCCeeeeccc-ccc-cccCCCCCCChhhHHHHHHHHHHHHHcC-CcceEEe
Q 040688 72 HYKEDIDIMAKLNFDAYRFSIS-WSR-IFPNGTGEVNPLGVAYYNRLIDYMLEKG-ITPYANL 131 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~g~~n~~~l~~y~~~i~~l~~~g-i~p~vtL 131 (484)
.-++.++.|+++|++.+.+|+. ++. +...-....+. +.+.+.|+.+.++| +.+.+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTV---EDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCH---HHHHHHHHHHHHhCCcceEEeE
Confidence 3478899999999999999985 533 22111011232 66888999999999 6555444
No 142
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=31.90 E-value=1.5e+02 Score=31.82 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc
Q 040688 74 KEDIDIMAKLNFDAYRFSI-SWS-RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP 137 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 137 (484)
+|.+++|+++|++.+-+++ +-+ ++.-.-.-..+ ++.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5678999999999888888 332 22211101123 35678999999999999888775 2444
No 143
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=31.58 E-value=39 Score=25.00 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=25.2
Q ss_pred HHHHHHHH-HcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHH
Q 040688 114 NRLIDYML-EKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYA 160 (484)
Q Consensus 114 ~~~i~~l~-~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 160 (484)
+++++.|. ..+|+|.+|.. .|-.-. ++.++.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~Le------~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKLE------KENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHHH------HHCHHHHHHhh
Confidence 57788885 56999999884 564433 56677777763
No 144
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=31.54 E-value=1.2e+02 Score=26.59 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCc
Q 040688 113 YNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDR 170 (484)
Q Consensus 113 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~ 170 (484)
+.-+++.|++.|++|++.+.= -.+.|.. |-|. +++..+.|.+=.+.+++++|=.
T Consensus 38 l~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 578999999999999999842 1134443 4564 5677788888888888888753
No 145
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=31.41 E-value=1.2e+02 Score=29.24 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhc
Q 040688 110 VAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 110 l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
++.....|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3567789999999999999999755543211 112455556667666666666665
No 146
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=31.08 E-value=1.1e+02 Score=29.56 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcc
Q 040688 113 YNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRV 171 (484)
Q Consensus 113 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v 171 (484)
.+..++.+++.|+.-+=.-.+|.... ...-++-.+....+.+.+.++.|. .+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a~-~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAAQ-AYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHHH-HTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHHH-hCCCeE
Confidence 57899999999999887777763222 111022355666677777776663 334333
No 147
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=31.04 E-value=92 Score=38.87 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHcCCCeeeeccccc---------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe--cC
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWS---------------RIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL--YH 133 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL--~H 133 (484)
....+-+.-+++||++++=+|=-+. +|.|.- | +.+=++++++.|+++||.+|+.+ +|
T Consensus 758 ~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~NH 831 (1693)
T PRK14507 758 ADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPNH 831 (1693)
T ss_pred HHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3466778999999999986664443 344432 2 34458999999999999999965 45
Q ss_pred CC-----CcHHHH
Q 040688 134 YD-----LPLALQ 141 (484)
Q Consensus 134 ~~-----~P~~l~ 141 (484)
.. .|.|..
T Consensus 832 ~~~~~~~n~w~~d 844 (1693)
T PRK14507 832 MGVGGADNPWWLD 844 (1693)
T ss_pred cCCCccCCHHHHH
Confidence 43 455544
No 148
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.99 E-value=1.7e+02 Score=31.78 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCeeeeccccccc
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRI 97 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri 97 (484)
++|++..++.|++.+|++.+.+.+
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv 123 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP 123 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH
Confidence 457899999999999999877665
No 149
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.71 E-value=76 Score=31.43 Aligned_cols=80 Identities=8% Similarity=-0.034 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhH
Q 040688 75 EDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIV 153 (484)
Q Consensus 75 eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~ 153 (484)
.+++++++.|++.+|+.++=|...-.. .+.-..+.++-..+.++.+++.|+++.++..+| .+ +. +..+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~~ 150 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KANP 150 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCCH
Confidence 689999999999999988655443221 133346678889999999999999988876655 11 11 2235
Q ss_pred HHHHHHHHHHHH
Q 040688 154 KDYADYADFCFK 165 (484)
Q Consensus 154 ~~f~~ya~~~~~ 165 (484)
+.+.++++.+.+
T Consensus 151 ~~~~~~~~~~~~ 162 (273)
T cd07941 151 EYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHh
Confidence 666677776654
No 150
>PRK01060 endonuclease IV; Provisional
Probab=30.48 E-value=2.2e+02 Score=27.79 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=37.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPY 128 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 128 (484)
+++=++.++++|++.+=+.+.-++.... ...+. +..+.+-+.+.++||+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~---~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEE---LNIEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCH---HHHHHHHHHHHHcCCCCC
Confidence 7888999999999999998776654432 24555 345566677789999853
No 151
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=30.40 E-value=1.9e+02 Score=31.65 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCeeeecc--cccccccC-CCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCCh
Q 040688 74 KEDIDIMAKLNFDAYRFSI--SWSRIFPN-GTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSC 150 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si--~W~ri~P~-~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 150 (484)
+|.+++|+++|++.+-+++ --.++.-. +.| .+ ++-..+.++.+++.|++..+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 6889999999999777777 22222211 112 22 24456788899999998666664 55653
Q ss_pred hhHHHHHHHHHHHHH--Hh-cCcceEEEeecccchhhcccccCCCCCC
Q 040688 151 DIVKDYADYADFCFK--TF-GDRVKNWFTFNEPRVIAALGFDNGINPP 195 (484)
Q Consensus 151 ~~~~~f~~ya~~~~~--~~-~~~v~~w~t~NEp~~~~~~gy~~G~~~P 195 (484)
++.+.+.+=++.+++ .+ -|.|+.+-+.=.|......-|..|.|.|
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 224455555566665 34 3567777766666655444466677666
No 152
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.55 E-value=1.9e+02 Score=27.86 Aligned_cols=68 Identities=15% Similarity=0.345 Sum_probs=49.0
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCCh
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSC 150 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 150 (484)
-.-+.=|+||++||.+++.| +|.+ |.-- ++=|..+-+.|.++|+. |+.- ||..
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPM~-Gl~~---leE~~avA~aca~~g~~-------------lEPT-GGId-- 187 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKF-------FPMG-GLKH---LEEYAAVAKACAKHGFY-------------LEPT-GGID-- 187 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeE-------eecC-Cccc---HHHHHHHHHHHHHcCCc-------------cCCC-CCcc--
Confidence 34567799999999999987 8887 5433 35588889999999983 2222 6753
Q ss_pred hhHHHHHHHHHHHHHHh
Q 040688 151 DIVKDYADYADFCFKTF 167 (484)
Q Consensus 151 ~~~~~f~~ya~~~~~~~ 167 (484)
.+.|.+..+.|.+.=
T Consensus 188 --l~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 188 --LDNFEEIVQIALDAG 202 (236)
T ss_pred --HHhHHHHHHHHHHcC
Confidence 566777777777654
No 153
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.50 E-value=1.3e+02 Score=29.98 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=45.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhc
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKY 144 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 144 (484)
.++=+++++++||+.+.+..- +.-+++.++||+++++.+.+++| ||.+|--..|.=+...|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 366699999999999998752 22488999999999999999998 78887666677666543
No 154
>PRK12677 xylose isomerase; Provisional
Probab=28.19 E-value=4.1e+02 Score=27.79 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=45.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EEecCCCCcHHHHhhcCCCCCh
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPY-ANLYHYDLPLALQDKYNGLLSC 150 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~~ 150 (484)
.+|-++.++++|++.+=+.. ..+.|-. ....+--+..+++-+.+.++||++. +|...|..|.+ +.|+++++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 68889999999999886632 2344432 1111111346788888899999965 55555555543 23788885
No 155
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=27.99 E-value=1.1e+02 Score=29.05 Aligned_cols=67 Identities=15% Similarity=0.354 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCCh
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSC 150 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 150 (484)
-.-+.=++||++||.+++.| +|-+ |.-.. +=|..+-+.|.++||.. + +=||..
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPm~-Gl~~l---eE~~avAkA~a~~g~~l-------------E-PTGGId-- 187 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKF-------FPMG-GLKHL---EELKAVAKACARNGFTL-------------E-PTGGID-- 187 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----------T-TTTTH---HHHHHHHHHHHHCT-EE-------------E-EBSS----
T ss_pred ccHHHHHHHHHHcCCCeeeE-------eecC-CcccH---HHHHHHHHHHHHcCcee-------------C-CcCCcC--
Confidence 34567799999999999987 8887 64433 55888999999999852 1 116643
Q ss_pred hhHHHHHHHHHHHHHH
Q 040688 151 DIVKDYADYADFCFKT 166 (484)
Q Consensus 151 ~~~~~f~~ya~~~~~~ 166 (484)
.+.|.+..+.|.+.
T Consensus 188 --l~N~~~I~~i~l~a 201 (218)
T PF07071_consen 188 --LDNFEEIVKICLDA 201 (218)
T ss_dssp --TTTHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHc
Confidence 34566667777654
No 156
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=27.39 E-value=2e+02 Score=30.81 Aligned_cols=93 Identities=24% Similarity=0.463 Sum_probs=58.0
Q ss_pred hHHH-HHHHHHcCCCeeeec-------ccccc-cccCCC-----------CCCChhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 73 YKED-IDIMAKLNFDAYRFS-------ISWSR-IFPNGT-----------GEVNPLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 73 y~eD-i~l~~~lG~~~~R~s-------i~W~r-i~P~~~-----------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
++.| ++++|+|.+...|+. ..|.. |-|... -+-|.=| .+++++.|...|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4566 689999999988863 24432 222210 0112223 46899999999999999996
Q ss_pred CCCCcHHHHhhcCCCCChhhHHHHHHHHHHHH--------HHhcC----cceEEEeeccc
Q 040688 133 HYDLPLALQDKYNGLLSCDIVKDYADYADFCF--------KTFGD----RVKNWFTFNEP 180 (484)
Q Consensus 133 H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~--------~~~~~----~v~~w~t~NEp 180 (484)
- |-...+....|.+||..=. ...|. .|++|.+=||-
T Consensus 127 ~------------Gsrgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 127 L------------GSRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred c------------CCccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 2 2233455666777764321 22232 59999999994
No 157
>PRK06256 biotin synthase; Validated
Probab=26.64 E-value=1.7e+02 Score=29.60 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCCeeeecc-cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 72 HYKEDIDIMAKLNFDAYRFSI-SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.-+|.++.|+++|++.+-+++ +=.++++.-...-+ .+-..+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 457899999999999998877 32234443211223 3556789999999999865544
No 158
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=26.58 E-value=4.3e+02 Score=27.80 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=59.4
Q ss_pred chHHHHHHHHHcCCCeeeeccccccc-----------ccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEec--------
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRI-----------FPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLY-------- 132 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri-----------~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-------- 132 (484)
...+-++.++++|++.+=+.=-|..- .|+. .++ +.| ...+++.+++.||++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 34566789999999998888899643 3332 122 124 66899999999999866330
Q ss_pred --CCCCcHHHHhhcC------------CCCChhhHHHHHHHHHHHHHHhc
Q 040688 133 --HYDLPLALQDKYN------------GLLSCDIVKDYADYADFCFKTFG 168 (484)
Q Consensus 133 --H~~~P~~l~~~~g------------g~~~~~~~~~f~~ya~~~~~~~~ 168 (484)
.-.+|.|+...-+ ...+|++.++..+-...+++.+|
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 0245888753201 15678888888888888788876
No 159
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=26.37 E-value=1.4e+02 Score=30.65 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhc
Q 040688 111 AYYNRLIDYMLEKGITPYANLYHYDLPLALQDKY 144 (484)
Q Consensus 111 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 144 (484)
+-=+++++++++.||+|++--+---.|..+.+++
T Consensus 95 ~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~ 128 (333)
T PF05089_consen 95 ELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKY 128 (333)
T ss_dssp HHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHS
T ss_pred HHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcC
Confidence 3447899999999999999888777788888775
No 160
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=25.80 E-value=1.2e+02 Score=34.36 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=35.3
Q ss_pred HHHHHHcCCCeeeeccccccc----------------ccCCCCCCCh-----hhHHHHHHHHHHHHHcCCcceEEec
Q 040688 77 IDIMAKLNFDAYRFSISWSRI----------------FPNGTGEVNP-----LGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 77 i~l~~~lG~~~~R~si~W~ri----------------~P~~~g~~n~-----~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
|+-+|+||++++=+.=-=.-. .|..--.++. ..++=+++||++|.++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999998664311100 0000001111 1244589999999999999999763
No 161
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=25.32 E-value=1.3e+02 Score=33.75 Aligned_cols=64 Identities=14% Similarity=-0.064 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCCh-----hhHHHHHHHHHHHHHHhcCcceEEEeecccc
Q 040688 115 RLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSC-----DIVKDYADYADFCFKTFGDRVKNWFTFNEPR 181 (484)
Q Consensus 115 ~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~-----~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 181 (484)
.++.+.++++=..-+....|..|.|+. +||..+ ..+.+..++..-+.+.+|=.++|-=++||=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 689999999988888888999999996 454443 3344556777777888888888888899954
No 162
>PTZ00445 p36-lilke protein; Provisional
Probab=25.15 E-value=1.4e+02 Score=28.74 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=41.0
Q ss_pred HHHHHHcCCCeeeeccccccccc-CCCCCCChh---------hHHHHHHHHHHHHHcCCcceEEec
Q 040688 77 IDIMAKLNFDAYRFSISWSRIFP-NGTGEVNPL---------GVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 77 i~l~~~lG~~~~R~si~W~ri~P-~~~g~~n~~---------~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
++++++.|++++=+.++=.-|-- +| |-.++. +-.-...++.+|.++||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg-G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG-GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc-cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 67899999999999888776641 22 333332 334577899999999999988776
No 163
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.12 E-value=2e+02 Score=28.84 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred hHHHHHHHHHcCCCeeeecc----cccccccCC---CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHH
Q 040688 73 YKEDIDIMAKLNFDAYRFSI----SWSRIFPNG---TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQ 141 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si----~W~ri~P~~---~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 141 (484)
.++=|++|+.+|+|.+-+=+ .+.. .|.- .|.+..+ =++++++.++++||+++.-+ |+|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~---ei~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKE---EIREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHH---HHHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 67789999999999887644 2221 2221 2667774 47799999999999999877 6776654
No 164
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.01 E-value=5.4e+02 Score=25.01 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA 129 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 129 (484)
-++|-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||+...
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 378999999999999988764211111111 12233 3466788888999999643
No 165
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.89 E-value=1.9e+02 Score=29.47 Aligned_cols=64 Identities=22% Similarity=0.462 Sum_probs=45.5
Q ss_pred chHHHHHHHHHcCCCeeeeccc----c-------cccccCC---------CCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 72 HYKEDIDIMAKLNFDAYRFSIS----W-------SRIFPNG---------TGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~---------~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
..++-|+.|+..++|.+.+-++ | +.+-..+ .|.+.. +=++++++.++++||++|.-+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 4677799999999998877662 3 2332111 033455 447899999999999998877
Q ss_pred cCCCCcHHHH
Q 040688 132 YHYDLPLALQ 141 (484)
Q Consensus 132 ~H~~~P~~l~ 141 (484)
|+|....
T Consensus 96 ---D~PGH~~ 102 (329)
T cd06568 96 ---DMPGHTN 102 (329)
T ss_pred ---CCcHHHH
Confidence 7887654
No 166
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.67 E-value=4e+02 Score=25.99 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=38.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA 129 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 129 (484)
-++|-+++++++|++.+=+++.-....|.. -.++. .....+-+.+.++||++..
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSR---EQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCH---HHHHHHHHHHHHcCCCcee
Confidence 488999999999999999876543322222 12233 4466888899999998653
No 167
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.53 E-value=4.1e+02 Score=27.05 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCcceEEecCC-----CCcHHHHhh-------------c-----------CCCCChhhHHHHHHHHHHHH
Q 040688 114 NRLIDYMLEKGITPYANLYHY-----DLPLALQDK-------------Y-----------NGLLSCDIVKDYADYADFCF 164 (484)
Q Consensus 114 ~~~i~~l~~~gi~p~vtL~H~-----~~P~~l~~~-------------~-----------gg~~~~~~~~~f~~ya~~~~ 164 (484)
..||+.|+++|++.++.+.-+ +.|..-+.. + =.|+||+.++.|.+.-+.++
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 588999999999887654432 122222110 0 14889999999887666654
Q ss_pred HHhcCcceEEEeecccchh
Q 040688 165 KTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 165 ~~~~~~v~~w~t~NEp~~~ 183 (484)
..| ---+|+=.|||..+
T Consensus 147 -~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 -DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred -hCC-CceEeecCCCcccc
Confidence 232 23466778999865
No 168
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=24.45 E-value=4.4e+02 Score=26.49 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccchhhcccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 040688 147 LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVIAALGFDNGINPPSRCSKGMGNCTAGNSSTEPYIAAHNMILSHA 226 (484)
Q Consensus 147 ~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha 226 (484)
|.-+.++-+++..|+. ...|+.+++=-|-.-++...-..+.|| +-..|++-|
T Consensus 1 wsYrrfILHYA~La~~-----aggVdaF~IGSEl~gLT~iR~~~~~fP-----------------------aV~~l~~LA 52 (299)
T PF13547_consen 1 WSYRRFILHYAHLAAA-----AGGVDAFCIGSELRGLTRIRDGAGSFP-----------------------AVEALRALA 52 (299)
T ss_pred CcHHHHHHHHHHHHHh-----cCCCcEEEEchhhhhheeecCCCCCCc-----------------------HHHHHHHHH
Q ss_pred HHHHHHHHHhccCCCceEEEEecCceeecC--CCCHHHHHHHHHHHHHhhhccccccccCCCChhhHHHHhhcCCCCCHH
Q 040688 227 AAVERFREKYQETQKGKIGILLDFVWYEPL--TRSKADNLAAQRARDFHIGWFLHPITYGEYPRTMQEIVGERLPKFTDA 304 (484)
Q Consensus 227 ~a~~~~~~~~~~~~~~~IG~~~~~~~~~P~--~~~~~D~~aa~~~~~~~~~~f~dp~~~G~yP~~~~~~l~~~lp~ft~~ 304 (484)
.-|+.+=- +++||+.+-+..-+.-. .+..-|+ .+-|||+-.-.
T Consensus 53 a~VR~ilG-----~~~kitYAADWsEY~~~~p~dg~gd~-----------~f~LDpLWa~~------------------- 97 (299)
T PF13547_consen 53 ADVRAILG-----PGTKITYAADWSEYFGYQPADGSGDV-----------YFHLDPLWADP------------------- 97 (299)
T ss_pred HHHHHHhC-----CCceEEEeccCHHhcCcCCCCCCCcc-----------cccCcccccCC-------------------
Q ss_pred HHHHhhCCccEEEEecccc
Q 040688 305 EVEMVKGSIDYLGVNQYTT 323 (484)
Q Consensus 305 d~~~ik~~~DfiGiNyY~~ 323 (484)
.+|||||+.|.+
T Consensus 98 -------~IDfIGID~Y~P 109 (299)
T PF13547_consen 98 -------NIDFIGIDNYFP 109 (299)
T ss_pred -------cCCEEEeecccc
No 169
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.34 E-value=2.1e+02 Score=29.00 Aligned_cols=63 Identities=16% Similarity=0.356 Sum_probs=46.3
Q ss_pred chHHHHHHHHHcCCCeeeecc----cccc---cccCCC------CCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcH
Q 040688 72 HYKEDIDIMAKLNFDAYRFSI----SWSR---IFPNGT------GEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPL 138 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si----~W~r---i~P~~~------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 138 (484)
..++=|+.|+.+++|.+.+-+ +|.- -.|+-+ |.+.. +=++++++.++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 356668999999999888766 5642 234311 34655 457899999999999999887 7886
Q ss_pred HH
Q 040688 139 AL 140 (484)
Q Consensus 139 ~l 140 (484)
..
T Consensus 93 H~ 94 (311)
T cd06570 93 HA 94 (311)
T ss_pred ch
Confidence 54
No 170
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=24.34 E-value=3.9e+02 Score=27.66 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhHHHHHHHHHHHHHcCCcc-eEEecCCCCcHHHHhhcCCCCC
Q 040688 74 KEDIDIMAKLNFDAYRFSISWSRIFPNG---TGEVNPLGVAYYNRLIDYMLEKGITP-YANLYHYDLPLALQDKYNGLLS 149 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~n~~~l~~y~~~i~~l~~~gi~p-~vtL~H~~~P~~l~~~~gg~~~ 149 (484)
++.++.|+++|++.+.+++ .-+-++- -|... ..+-..+.|+.+++.|+.. -+.|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999666655 2222221 12221 1244667899999999974 45554 45553
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceEEEeecccchh
Q 040688 150 CDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 183 (484)
++.+.|.+=++.+.+.=-+.|..+...=||...
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245566666666665444678888888888753
No 171
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.91 E-value=1.9e+02 Score=27.50 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=55.1
Q ss_pred HHHHHH----HHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCC
Q 040688 74 KEDIDI----MAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLL 148 (484)
Q Consensus 74 ~eDi~l----~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 148 (484)
++|++. +++.|++.+|+.++=+...... .+.--.+.++-..++++.+++.|++..+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 456555 4569999999998666543332 1334456678889999999999999988775421
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 040688 149 SCDIVKDYADYADFCFKT 166 (484)
Q Consensus 149 ~~~~~~~f~~ya~~~~~~ 166 (484)
+..++.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 23356677777777665
No 172
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.79 E-value=75 Score=29.02 Aligned_cols=60 Identities=15% Similarity=0.029 Sum_probs=39.6
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceE
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYA 129 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~v 129 (484)
....++-+++++.||++.+++...+....+... ...-...++.++.+.+.+.++|+++.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 557788899999999999999876411111110 011122456778888888899987544
No 173
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.68 E-value=91 Score=35.16 Aligned_cols=64 Identities=20% Similarity=0.409 Sum_probs=43.3
Q ss_pred ccchHHH-HHHHHHcCCCeeeecc--cc-ccc-----------ccCCC-CCCC-hhhHHHHHHHHHHHHHcCCcceEEec
Q 040688 70 YHHYKED-IDIMAKLNFDAYRFSI--SW-SRI-----------FPNGT-GEVN-PLGVAYYNRLIDYMLEKGITPYANLY 132 (484)
Q Consensus 70 y~ry~eD-i~l~~~lG~~~~R~si--~W-~ri-----------~P~~~-g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~ 132 (484)
|..+.|+ +..+|+||.|++-+=- +- +.. -|... |..+ +.-+.=.+.||+++.+.||++++.+-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 9999999999876411 11 111 12211 3333 11133489999999999999999887
Q ss_pred C
Q 040688 133 H 133 (484)
Q Consensus 133 H 133 (484)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 6
No 174
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.67 E-value=2.2e+02 Score=32.19 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCcceEEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 040688 113 YNRLIDYMLEKGITPYANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKT 166 (484)
Q Consensus 113 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~ 166 (484)
...+|+.|+++|+..=+..+|-.++.-+..+||. +-+-+++--.+|++.|-+.
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKL 264 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHHC
Confidence 4459999999999999999999999999999875 5566777777777776553
No 175
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=23.55 E-value=1.5e+02 Score=26.67 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCcce--EEecCCCCcHHHHhhcCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeecc
Q 040688 111 AYYNRLIDYMLEKGITPY--ANLYHYDLPLALQDKYNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNE 179 (484)
Q Consensus 111 ~~y~~~i~~l~~~gi~p~--vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NE 179 (484)
+=|+++++.|+..++..- ..+.+=.+|.-+... .-.-|=...++|..|-+.+++-++.+++--.+.+|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~e-aVPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKE-AVPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhh-cCCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 359999999999986532 233444557666554 33444566789999999999999998877777777
No 176
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=23.50 E-value=2.8e+02 Score=30.90 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=52.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCc----HHHH-------
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLP----LALQ------- 141 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~------- 141 (484)
.++|++++++.|++.+|+..+-+.+ +-....|+.++++|....+++..-..| ..+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999866554 113445566666666665555332223 1111
Q ss_pred ----------hhcCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 142 ----------DKYNGLLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 142 ----------~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
+. .|-..|. ...+.++.+-++++ ..-...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt-~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDM-AGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCc-CCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 11 3444443 34556666666664 3335566666654
No 177
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.49 E-value=5.7e+02 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCcc
Q 040688 150 CDIVKDYADYADFCFKTFGDRV 171 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~~v 171 (484)
....+...+|++.+-++.|-++
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~ 120 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKV 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCe
Confidence 3444566666666666655543
No 178
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=23.26 E-value=37 Score=26.52 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.8
Q ss_pred CCccccchH--HHHHHHHHcCC
Q 040688 66 TVDQYHHYK--EDIDIMAKLNF 85 (484)
Q Consensus 66 a~d~y~ry~--eDi~l~~~lG~ 85 (484)
-.|||..|. +|++.|+++|+
T Consensus 45 YadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 45 YADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHccChHHHHHHHHHcCC
Confidence 368888875 89999999997
No 179
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.25 E-value=2.7e+02 Score=27.56 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=47.5
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC
Q 040688 66 TVDQYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY 134 (484)
Q Consensus 66 a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~ 134 (484)
+++..+...+-.+.+|++|+..+|-+..=+|--|...-.+ +.+.+..+-+.+.+.||..+-+.++-
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 4556677778889999999999999975566655432112 23556677777899999988888653
No 180
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.17 E-value=4.9e+02 Score=26.84 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=54.8
Q ss_pred hHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCc-ceEEecCCCCcHHHHhhcCCCCC
Q 040688 73 YKEDIDIMAKLNFDAYRFSI-SWS-RIFPNGTGEVNPLGVAYYNRLIDYMLEKGIT-PYANLYHYDLPLALQDKYNGLLS 149 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~~~ 149 (484)
=+|.+++|+++|++.+.+++ +-+ ++.-.-....+. +-..+.++.+++.|+. +.++|. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~---~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTP---GRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 36889999999999766666 332 222111012232 4567899999999998 556654 45553
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceEEEeecccchh
Q 040688 150 CDIVKDYADYADFCFKTFGDRVKNWFTFNEPRVI 183 (484)
Q Consensus 150 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 183 (484)
++.+.|.+=.+.+.+.=-+.|..+...=||+..
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 233445554555444333455555444566543
No 181
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.88 E-value=7.2e+02 Score=25.94 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE-EecCCCCcHHHHhhcCCCCC
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA-NLYHYDLPLALQDKYNGLLS 149 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~~~gg~~~ 149 (484)
-...|-|+.++++|++.+=+ ....+.|-+ -...... ...+++=+.|.++||++.. |..-+..|.+ . .|++.+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~--~-~g~las 104 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF--K-DGGFTS 104 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc--c-CCCCCC
Confidence 35688899999999998854 334455554 1111111 3366788889999999654 4322222333 1 267777
Q ss_pred h
Q 040688 150 C 150 (484)
Q Consensus 150 ~ 150 (484)
+
T Consensus 105 ~ 105 (382)
T TIGR02631 105 N 105 (382)
T ss_pred C
Confidence 5
No 182
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.78 E-value=1.8e+02 Score=28.04 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=37.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEE-ecCCCCc
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPNGT--GEVNPLGVAYYNRLIDYMLEKGITPYAN-LYHYDLP 137 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vt-L~H~~~P 137 (484)
..++=|+++++||++.+++...+ + |.+. .+.-....+..+++.+.+.++||+..+= +.|++.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 35666899999999998864322 1 2210 1111223455577777778899885552 3465544
No 183
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.59 E-value=1.2e+02 Score=29.65 Aligned_cols=59 Identities=7% Similarity=0.051 Sum_probs=37.8
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEE
Q 040688 70 YHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGT-GEVNPLGVAYYNRLIDYMLEKGITPYAN 130 (484)
Q Consensus 70 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vt 130 (484)
-.+++.=|+++++||++.+++.-. +..+... .+.-...++.++++++.+.++||+..+=
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 345777899999999999998531 1111110 0111234567778888889999976553
No 184
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.45 E-value=4.7e+02 Score=25.30 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA 129 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 129 (484)
++|-++.++++|++.+=+++.=.+..+.. ..++. .....+-+.|.++||+...
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR-LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc-ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 68899999999999998875421111111 23444 3466888899999999654
No 185
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.44 E-value=2.3e+02 Score=28.44 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCc-ce-E---------------EecCCCCcHHHHhhcCCCCCh-h-hHHHHHHHHHHHHHHhcC--
Q 040688 111 AYYNRLIDYMLEKGIT-PY-A---------------NLYHYDLPLALQDKYNGLLSC-D-IVKDYADYADFCFKTFGD-- 169 (484)
Q Consensus 111 ~~y~~~i~~l~~~gi~-p~-v---------------tL~H~~~P~~l~~~~gg~~~~-~-~~~~f~~ya~~~~~~~~~-- 169 (484)
+-|.++++.+++.||+ |+ + .+.+-.+|.|+.+++....+. + ..+.=.+||....+.+-+
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5577999999999965 22 2 345688999999876666443 2 233444555555555433
Q ss_pred --cceEEEeecccchhh
Q 040688 170 --RVKNWFTFNEPRVIA 184 (484)
Q Consensus 170 --~v~~w~t~NEp~~~~ 184 (484)
.|.++ |+|-+....
T Consensus 269 v~GvH~y-t~n~~~~~~ 284 (296)
T PRK09432 269 VKDFHFY-TLNRAELTY 284 (296)
T ss_pred CCEEEEe-cCCChHHHH
Confidence 34444 678777543
No 186
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.30 E-value=3.1e+02 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=24.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCcceEEEeecccch
Q 040688 147 LLSCDIVKDYADYADFCFKTFGDRVKNWFTFNEPRV 182 (484)
Q Consensus 147 ~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 182 (484)
++||+..+.|.+..+..+...|= .-+|+=.|||.+
T Consensus 137 ftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 137 FTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 68899999888877555554432 356777899974
No 187
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=22.09 E-value=1.4e+02 Score=25.56 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCeeeecc-ccccc-ccCCCCCCChhhHHHHHHHHHHHHHcCCcceE
Q 040688 74 KEDIDIMAKLNFDAYRFSI-SWSRI-FPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA 129 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si-~W~ri-~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 129 (484)
++.++.|+++|++.+++|+ +-..- .....+ .....+-.-+.++.|+++|+.++.
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~ 145 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVI 145 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEE
Confidence 8999999999999999999 33322 111101 112336677899999999999633
No 188
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=21.93 E-value=3e+02 Score=29.11 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCeeeecc--cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EEecCCCCcHH--HHhhcCCCC
Q 040688 74 KEDIDIMAKLNFDAYRFSI--SWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPY-ANLYHYDLPLA--LQDKYNGLL 148 (484)
Q Consensus 74 ~eDi~l~~~lG~~~~R~si--~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~gg~~ 148 (484)
.+|+..+.+|.--..|+++ .|. .+|.+.|+ +.++++||..- +...-|..|+. -.=++|..+
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd--------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD--------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC--------cCCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 6788888888877777766 772 24665554 88999999988 66665666632 111347777
Q ss_pred Ch--hhHHHHHHHHHHHHH---HhcC
Q 040688 149 SC--DIVKDYADYADFCFK---TFGD 169 (484)
Q Consensus 149 ~~--~~~~~f~~ya~~~~~---~~~~ 169 (484)
|| .+.+...+-+..|.+ ..|.
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs 164 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGS 164 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 75 666777777666644 5555
No 189
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.91 E-value=1.1e+02 Score=29.89 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE
Q 040688 69 QYHHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYA 129 (484)
Q Consensus 69 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 129 (484)
...+++.-|++++.||++.+++.-......+.. ...-...++.++.+.+.+.++||+..+
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345666678999999999998864322111111 111234456788888889999986543
No 190
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.83 E-value=3.5e+02 Score=26.32 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHc-CCcceE
Q 040688 71 HHYKEDIDIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEK-GITPYA 129 (484)
Q Consensus 71 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~-gi~p~v 129 (484)
..+++-+++++++|++.+=+.+......+.. ..+. +..+.+.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5689999999999999998888665544433 1233 4566777777787 665443
No 191
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.65 E-value=70 Score=19.82 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCcc
Q 040688 113 YNRLIDYMLEKGITP 127 (484)
Q Consensus 113 y~~~i~~l~~~gi~p 127 (484)
-..+++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457888888899987
No 192
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=21.40 E-value=1.9e+02 Score=27.46 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 78 DIMAKLNFDAYRFSISWSRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 78 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.++|++|++..=++-|=.| +.+. | ..+-+..++++||+|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc----H------HHHHHHHHHHCCCEEEEEE
Confidence 8999999998888877666 3332 2 4577889999999999999
No 193
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=21.38 E-value=3.3e+02 Score=26.24 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=43.7
Q ss_pred ccChHHHHHHHHHHHHHcCCCe-EEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH--cCCCEEEEee
Q 040688 366 YIVPWGIYKAITYVKERYQNPT-MILAENGMDDPGNVTFPQALHDATRVNYFRDYLSYLKKAVD--DGANLIGYFA 438 (484)
Q Consensus 366 ~i~P~Gl~~~l~~i~~rY~~pp-I~ITENG~~~~~~~~~~~~i~D~~Ri~yl~~hL~~l~~Ai~--dGv~V~GY~~ 438 (484)
.++-+.|..+..++..|=.... ++|-=-|.+.++ ..-.....+||..||+++.+.|+ .+|.+.|-=+
T Consensus 116 niDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~------st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGI 185 (219)
T PF11775_consen 116 NIDGEALRWAAERLLARPEQRKILIVISDGAPADD------STLSANDGDYLDAHLRQVIAEIETRSDVELIAIGI 185 (219)
T ss_pred CCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcc------cccccCChHHHHHHHHHHHHHHhccCCcEEEEEEc
Confidence 4677778877777766633222 555555555432 11223456799999999999996 4788877653
No 194
>PRK08508 biotin synthase; Provisional
Probab=21.28 E-value=3.2e+02 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCeeeecccc-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEe
Q 040688 73 YKEDIDIMAKLNFDAYRFSISW-SRIFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANL 131 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 131 (484)
.+|.++.|++.|++++-..++= ++++|.-...-++ +-.-+.|+.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~---~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTW---EERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCH---HHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999988722 4466664222333 335567788999999765554
No 195
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.75 E-value=3.4e+02 Score=27.71 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=51.3
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccC-C-----CCCCChhhHHHHHHHHHHHHHcCCcceEEecCCCCcHHHHhhcC
Q 040688 72 HYKEDIDIMAKLNFDAYRFSISWSRIFPN-G-----TGEVNPLGVAYYNRLIDYMLEKGITPYANLYHYDLPLALQDKYN 145 (484)
Q Consensus 72 ry~eDi~l~~~lG~~~~R~si~W~ri~P~-~-----~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g 145 (484)
.-+|.++.||++|++.+- +.... ++++ - .+.... +-..+.|+.+++.||++..++. +++|
T Consensus 139 ~~~e~l~~LkeAGl~~i~-~~~~E-~~~~~v~~~i~~~~~~~---~~~~~~i~~a~~~Gi~v~s~~i-~G~~-------- 204 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMP-GTAAE-ILDDEVRKVICPDKLST---AEWIEIIKTAHKLGIPTTATIM-YGHV-------- 204 (343)
T ss_pred CHHHHHHHHHHhCccccc-Ccchh-hcCHHHHHhcCCCCCCH---HHHHHHHHHHHHcCCcccceEE-EecC--------
Confidence 347889999999999885 22222 2211 0 022232 3356899999999998876653 1222
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCcceEEEeec
Q 040688 146 GLLSCDIVKDYADYADFCFKTFGDRVKNWFTFN 178 (484)
Q Consensus 146 g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~N 178 (484)
.+.+-+.....+.+.+-..++. +.-.+++|
T Consensus 205 --Et~ed~~~~l~~lr~l~~~~~~-~~~~iP~~ 234 (343)
T TIGR03551 205 --ETPEHWVDHLLILREIQEETGG-FTEFVPLP 234 (343)
T ss_pred --CCHHHHHHHHHHHHHhhHHhCC-eeEEEecc
Confidence 3334444555555555555542 33444544
No 196
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.46 E-value=3e+02 Score=29.79 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=48.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEEecC
Q 040688 73 YKEDIDIMAKLNFDAYRFSISWSRIFPNG-TGEVNPLGVAYYNRLIDYMLEKGITPYANLYH 133 (484)
Q Consensus 73 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H 133 (484)
-++||+.+.+.|++.+++.++-|.+.-.. .+.--.+.++-..+.|..++++|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 48999999999999999999777664332 13445667788889999999999998887753
No 197
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.24 E-value=6.6e+02 Score=25.09 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=32.3
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcCCcceEEecCC
Q 040688 97 IFPNGTGEVNPLGVAYYNRLIDYMLEKGITPYANLYHY 134 (484)
Q Consensus 97 i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~ 134 (484)
..|...|-++.+-+..++++++.+.++|-..++=|.|-
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 63 GYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 34443377899999999999999999999999999994
Done!