Your job contains 1 sequence.
>040690
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL
WRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGY
DNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLA
KLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVV
ELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040690
(285 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|BA_3959 - symbol:BA_3959 "1-deoxy-D-xylulose 5-p... 637 2.3e-62 1
TIGR_CMR|GSU_1915 - symbol:GSU_1915 "1-deoxy-D-xylulose 5... 636 3.0e-62 1
TIGR_CMR|CHY_1778 - symbol:CHY_1778 "1-deoxy-D-xylulose 5... 608 2.7e-59 1
TIGR_CMR|BA_3409 - symbol:BA_3409 "1-deoxy-D-xylulose 5-p... 607 3.5e-59 1
TIGR_CMR|DET_0371 - symbol:DET_0371 "1-deoxy-D-xylulose 5... 593 1.1e-57 1
GENEDB_PFALCIPARUM|PF14_0641 - symbol:PF14_0641 "1-deoxy-... 466 4.8e-56 2
UNIPROTKB|Q8IKG4 - symbol:DXR "1-deoxy-D-xylulose 5-phosp... 466 4.8e-56 2
TIGR_CMR|SPO_1667 - symbol:SPO_1667 "1-deoxy-D-xylulose 5... 560 3.4e-54 1
TIGR_CMR|ECH_0557 - symbol:ECH_0557 "1-deoxy-D-xylulose 5... 514 2.5e-49 1
TIGR_CMR|SO_1635 - symbol:SO_1635 "1-deoxy-D-xylulose 5-p... 514 2.5e-49 1
UNIPROTKB|P45568 - symbol:dxr "Dxr" species:83333 "Escher... 503 3.7e-48 1
UNIPROTKB|P64012 - symbol:dxr "1-deoxy-D-xylulose 5-phosp... 501 6.0e-48 1
TIGR_CMR|CPS_1559 - symbol:CPS_1559 "1-deoxy-D-xylulose 5... 484 3.8e-46 1
UNIPROTKB|Q9KPV8 - symbol:dxr "1-deoxy-D-xylulose 5-phosp... 483 4.8e-46 1
TIGR_CMR|VC_2254 - symbol:VC_2254 "1-deoxy-D-xylulose 5-p... 483 4.8e-46 1
TIGR_CMR|APH_0440 - symbol:APH_0440 "1-deoxy-D-xylulose 5... 474 4.4e-45 1
TIGR_CMR|NSE_0443 - symbol:NSE_0443 "1-deoxy-D-xylulose 5... 353 2.9e-32 1
TIGR_CMR|CJE_1535 - symbol:CJE_1535 "1-deoxy-D-xylulose 5... 343 3.3e-31 1
>TIGR_CMR|BA_3959 [details] [associations]
symbol:BA_3959 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:198094 "Bacillus anthracis str. Ames"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 RefSeq:NP_846202.1
RefSeq:YP_020598.1 RefSeq:YP_029923.1 ProteinModelPortal:Q81WL4
DNASU:1086817 EnsemblBacteria:EBBACT00000010342
EnsemblBacteria:EBBACT00000016898 EnsemblBacteria:EBBACT00000021953
GeneID:1086817 GeneID:2819523 GeneID:2849846 KEGG:ban:BA_3959
KEGG:bar:GBAA_3959 KEGG:bat:BAS3672 OMA:AHPNWVM
ProtClustDB:PRK05447 BioCyc:BANT260799:GJAJ-3730-MONOMER
BioCyc:BANT261594:GJ7F-3847-MONOMER Uniprot:Q81WL4
Length = 380
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 124/275 (45%), Positives = 186/275 (67%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+ AIEA K I +ANKET++ G ++ A KHN+ LP DSEHSA+FQC+ G E +
Sbjct: 105 PTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCLNGENEKRI 164
Query: 61 WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
R+I+TAS D +++ +TV DAL+HP W++G KITIDSAT+ NKGLEVIEAH+L
Sbjct: 165 SRLIITASGGSFRDKTRDELHHVTVEDALRHPNWSMGSKITIDSATMMNKGLEVIEAHWL 224
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
FG Y+ I++V+H +SI+HSM+E +D SV+ QLG DMR+P+ Y +++P+R+ S+
Sbjct: 225 FGIPYEQIDVVLHKESIIHSMVEFEDRSVMAQLGSPDMRVPIQYALTYPDRLPLSDTK-- 282
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
L+L ++G+L F + + + Y AG+AGG+M V++AANE AVE F+ +I +L
Sbjct: 283 QLNLWEIGTLHFEKMNQERFRCLRFAYEAGKAGGSMPAVMNAANEVAVEAFLQKRIGFLT 342
Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREY 270
+ ++E + H ++++ PSLE+IL D R +
Sbjct: 343 VEDLIEKAMNHH--NVIARPSLEEILEIDAATRRF 375
>TIGR_CMR|GSU_1915 [details] [associations]
symbol:GSU_1915 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0070402 eggNOG:COG0743
HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
RefSeq:NP_952964.1 ProteinModelPortal:Q74BW4 SMR:Q74BW4
GeneID:2688386 KEGG:gsu:GSU1915 PATRIC:22026695
BioCyc:GSUL243231:GH27-1966-MONOMER Uniprot:Q74BW4
Length = 386
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 132/279 (47%), Positives = 181/279 (64%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT AAI AGKD+ALANKET++ G I+ L N++ P DSEHSAVFQ ++G +
Sbjct: 107 PTAAAIRAGKDVALANKETLVTAGRLIMDLVRDKNVRLYPVDSEHSAVFQSMEGQSRKDV 166
Query: 61 WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
RIILTAS + P++++ +++ DAL HP W++G+KITIDSAT+ NKGLEVIEA +L
Sbjct: 167 LRIILTASGGPFLNLPLDQLSRVSIDDALNHPNWSMGRKITIDSATMMNKGLEVIEARWL 226
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
F + I++ IHPQSI+HSM+E D SV+ QLG DM+ P+ Y +++PER+ V
Sbjct: 227 FDTPAERIDVNIHPQSIIHSMVEYVDGSVMAQLGVPDMKAPIAYALTYPERVPTG-VN-- 283
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
PLDL L LTF PD + P++ L Y A AG +M V++AANE AVE F++G I ++D
Sbjct: 284 PLDLTALSGLTFFKPDYRRFPALKLAYDALAAGESMPAVMNAANEVAVEAFLSGVIGFID 343
Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL 274
I + D H A +S+ +E+ L D WARE L
Sbjct: 344 IAATIARIMDAHEAHTLST--IEEALITDRWAREKAREL 380
>TIGR_CMR|CHY_1778 [details] [associations]
symbol:CHY_1778 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
RefSeq:YP_360598.1 ProteinModelPortal:Q3AB86 STRING:Q3AB86
GeneID:3728128 KEGG:chy:CHY_1778 PATRIC:21276667
BioCyc:CHYD246194:GJCN-1777-MONOMER Uniprot:Q3AB86
Length = 384
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 137/279 (49%), Positives = 184/279 (65%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+ A++AGK I LANKETM+A G I PL K LP DSEHSA+FQ ++G E
Sbjct: 107 PTIEALKAGKIIYLANKETMVAAGEIITPLM-KLGENLLPVDSEHSAIFQALRG--EKLA 163
Query: 61 W--RIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAH 113
W ++++TAS P +E++K +TVA+ALKHP W +G KITIDSATL NKGLE+IEAH
Sbjct: 164 WVKKLLITASGGPFREYTLEQLKNVTVAEALKHPRWKMGNKITIDSATLMNKGLEIIEAH 223
Query: 114 YLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVT 173
+LF Y+ IE VIHPQS++HS++E D SV+ QLG DMR P+ Y +++PER + + +
Sbjct: 224 FLFQIPYEKIEPVIHPQSVIHSLVEFYDGSVLAQLGLPDMRHPIQYALTYPER-FPNNL- 281
Query: 174 WPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISY 233
P L+L ++G L+F PD + P++ L AG+AG VL+AANE AVE F+ GKI +
Sbjct: 282 -PGLNLTEIGVLSFEKPDYERFPALKLAIQAGKAGNIYPAVLNAANEIAVEAFLAGKIKF 340
Query: 234 LDIFKVVE--LTC-DKHRADLVSSPSLEDILHYDGWARE 269
L+I ++VE L C + DL E IL D ARE
Sbjct: 341 LEIAQIVEKVLNCFSPVKMDL------ETILEVDFRARE 373
>TIGR_CMR|BA_3409 [details] [associations]
symbol:BA_3409 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:198094 "Bacillus anthracis str. Ames"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0070402
RefSeq:NP_845693.1 RefSeq:YP_020043.1 RefSeq:YP_029417.1
ProteinModelPortal:Q81N10 DNASU:1085180
EnsemblBacteria:EBBACT00000009002 EnsemblBacteria:EBBACT00000018754
EnsemblBacteria:EBBACT00000022801 GeneID:1085180 GeneID:2817385
GeneID:2849772 KEGG:ban:BA_3409 KEGG:bar:GBAA_3409 KEGG:bat:BAS3160
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 OMA:FIDGSVM
ProtClustDB:PRK12464 BioCyc:BANT260799:GJAJ-3222-MONOMER
BioCyc:BANT261594:GJ7F-3332-MONOMER GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 Uniprot:Q81N10
Length = 385
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 126/279 (45%), Positives = 175/279 (62%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+ A++A KDIA+ANKET++A G + LA ++ + +P DSEHSA+FQC+ G +
Sbjct: 107 PTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLNGENNKEI 166
Query: 61 WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
++I+TAS D E+MK + DALKHP W +G K+TIDSATL NKG EV+EA +L
Sbjct: 167 DKLIVTASGGAFRDKTREEMKTLQAKDALKHPNWLMGAKLTIDSATLMNKGFEVMEARWL 226
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
F Y+ I ++IH +SI+HS++E D SVI QLG DMR+P+ Y +P R+ S +
Sbjct: 227 FDIPYEKINVMIHKESIIHSLVEFIDGSVIAQLGAPDMRMPIQYAFHYPTRLPSS---YE 283
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
L+L ++GSL F PD K P + Y G+ GG VL+AANE A LF+ +I++ D
Sbjct: 284 KLNLLEIGSLHFEKPDLEKFPCLQYAYECGKIGGITPAVLNAANEIANALFLKNEIAFFD 343
Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL 274
I K + T + H V PSL+ IL D WAR+Y L
Sbjct: 344 IEKTIYKTVEAHHN--VKDPSLDAILEADQWARQYANQL 380
>TIGR_CMR|DET_0371 [details] [associations]
symbol:DET_0371 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 GO:GO:0016853 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0070402 GO:GO:0016114 eggNOG:COG0743 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:AHPNWVM ProtClustDB:PRK05447 RefSeq:YP_181117.1
ProteinModelPortal:Q3Z9I2 STRING:Q3Z9I2 GeneID:3230315
KEGG:det:DET0371 PATRIC:21607811 BioCyc:DETH243164:GJNF-371-MONOMER
Uniprot:Q3Z9I2
Length = 377
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 126/279 (45%), Positives = 176/279 (63%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
P +AA AGK IALANKE++++ G + A ++ K LP DSEHSA++QC+ G
Sbjct: 100 PVLAAARAGKVIALANKESLVSAGEIVTATAQENRAKILPVDSEHSAIWQCLSGEVTPPA 159
Query: 61 WRIILTASDWPV-----EKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
RIILTAS P +++ ++T ALKHP W +G K+TIDSA+L NKGLE+IEA +L
Sbjct: 160 -RIILTASGGPFRSLTKDEIAKVTPEQALKHPSWKMGTKVTIDSASLMNKGLEIIEARWL 218
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
F NI++VIHPQSI+HSM+E D S+ QL DMR P+ +++PER+ + +T P
Sbjct: 219 FDMPVRNIQVVIHPQSIIHSMVEFADGSLKAQLSRPDMRFPIQCALTYPERL--TNLTLP 276
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
L+ A++G L F PD + P + L +AG G T L AA+E AVE+F+ G+I +
Sbjct: 277 RLNWAEIGKLDFEMPDMDRFPCLKLAISAGEEGKTFPAALCAADELAVEMFLKGEIGFGQ 336
Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL 274
I +++ D H+A V+SPSL+DIL D WAR L
Sbjct: 337 IPQLIAKVLDAHQA--VASPSLDDILAADAWARRKVTEL 373
>GENEDB_PFALCIPARUM|PF14_0641 [details] [associations]
symbol:PF14_0641 "1-deoxy-D-xylulose
5-phosphate reductoisomerase" species:5833 "Plasmodium falciparum"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR003821
InterPro:IPR013512 InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:AE014187 GO:GO:0070402 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:LYDIPFD RefSeq:XP_001348815.1 HSSP:P45568
ProteinModelPortal:Q8IKG4 EnsemblProtists:PF14_0641:mRNA
GeneID:812223 KEGG:pfa:PF14_0641 EuPathDB:PlasmoDB:PF3D7_1467300
ProtClustDB:CLSZ2435007 GO:GO:0020011 Uniprot:Q8IKG4
Length = 488
Score = 466 (169.1 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 99/253 (39%), Positives = 150/253 (59%)
Query: 27 ILPLAHKHNIKFLPADSEHSAVFQCIQG--LPEGALWRIILTASDWP-----VEKMKEIT 79
I+P+ +H+ F D+ +C+Q + +I L +S P ++++K +T
Sbjct: 227 IIPVDSEHSAIFQCLDNNKVLKTKCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVT 286
Query: 80 VADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIET 139
+ALKHP W +GKKITIDSAT+ NKGLEVIE H+LF Y++IE+++H + I+HS +E
Sbjct: 287 SENALKHPKWKMGKKITIDSATMMNKGLEVIETHFLFDVDYNDIEVIVHKECIIHSCVEF 346
Query: 140 QDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVN 199
D SVI Q+ + DM+IP+LY+++WP+RI + PLDLA++ +LTF P P +
Sbjct: 347 IDKSVISQMYYPDMQIPILYSLTWPDRI---KTNLKPLDLAQVSTLTFHKPSLEHFPCIK 403
Query: 200 LCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPS--- 256
L Y AG G VL+A+NE A LF+N KI Y DI ++ + + VS S
Sbjct: 404 LAYQAGIKGNFYPTVLNASNEIANNLFLNNKIKYFDISSIISQVLESFNSQKVSENSEDL 463
Query: 257 LEDILHYDGWARE 269
++ IL WA++
Sbjct: 464 MKQILQIHSWAKD 476
Score = 129 (50.5 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKH-NIKFLPADSEHSAVFQCI 52
T+ AI K +ALANKE++++ G F+ L + H N K +P DSEHSA+FQC+
Sbjct: 190 TMYAIMNNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCL 241
>UNIPROTKB|Q8IKG4 [details] [associations]
symbol:DXR "1-deoxy-D-xylulose 5-phosphate
reductoisomerase, apicoplast" species:36329 "Plasmodium falciparum
3D7" [GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR003821
InterPro:IPR013512 InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:AE014187 GO:GO:0070402 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:LYDIPFD RefSeq:XP_001348815.1 HSSP:P45568
ProteinModelPortal:Q8IKG4 EnsemblProtists:PF14_0641:mRNA
GeneID:812223 KEGG:pfa:PF14_0641 EuPathDB:PlasmoDB:PF3D7_1467300
ProtClustDB:CLSZ2435007 GO:GO:0020011 Uniprot:Q8IKG4
Length = 488
Score = 466 (169.1 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 99/253 (39%), Positives = 150/253 (59%)
Query: 27 ILPLAHKHNIKFLPADSEHSAVFQCIQG--LPEGALWRIILTASDWP-----VEKMKEIT 79
I+P+ +H+ F D+ +C+Q + +I L +S P ++++K +T
Sbjct: 227 IIPVDSEHSAIFQCLDNNKVLKTKCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVT 286
Query: 80 VADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIET 139
+ALKHP W +GKKITIDSAT+ NKGLEVIE H+LF Y++IE+++H + I+HS +E
Sbjct: 287 SENALKHPKWKMGKKITIDSATMMNKGLEVIETHFLFDVDYNDIEVIVHKECIIHSCVEF 346
Query: 140 QDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVN 199
D SVI Q+ + DM+IP+LY+++WP+RI + PLDLA++ +LTF P P +
Sbjct: 347 IDKSVISQMYYPDMQIPILYSLTWPDRI---KTNLKPLDLAQVSTLTFHKPSLEHFPCIK 403
Query: 200 LCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPS--- 256
L Y AG G VL+A+NE A LF+N KI Y DI ++ + + VS S
Sbjct: 404 LAYQAGIKGNFYPTVLNASNEIANNLFLNNKIKYFDISSIISQVLESFNSQKVSENSEDL 463
Query: 257 LEDILHYDGWARE 269
++ IL WA++
Sbjct: 464 MKQILQIHSWAKD 476
Score = 129 (50.5 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKH-NIKFLPADSEHSAVFQCI 52
T+ AI K +ALANKE++++ G F+ L + H N K +P DSEHSA+FQC+
Sbjct: 190 TMYAIMNNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCL 241
>TIGR_CMR|SPO_1667 [details] [associations]
symbol:SPO_1667 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0030604 "1-deoxy-D-xylulose-5-phosphate
reductoisomerase activity" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0070402
eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
HOGENOM:HOG000007221 RefSeq:YP_166906.1 ProteinModelPortal:Q5LSU9
GeneID:3194834 KEGG:sil:SPO1667 PATRIC:23376659 Uniprot:Q5LSU9
Length = 395
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 114/277 (41%), Positives = 172/277 (62%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
P +AA++ G +ALANKET++ G +L A +H + LP DSEHSAVFQ + G A+
Sbjct: 111 PGLAALKQGATLALANKETLVCAGALVLETARRHGARLLPVDSEHSAVFQALVGEDMEAV 170
Query: 61 WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
RI++TAS DWP+E++ T A +HP W +G++ITIDSA++FNK LEVIE
Sbjct: 171 ERIVITASGGAFRDWPLERLASATAEQAAQHPNWDMGQRITIDSASMFNKALEVIETREF 230
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
FG D IE+++HP+S++H+++ +D +++ LG DMR + Y + WPER ++
Sbjct: 231 FGIDPDRIEVIVHPESMVHALVGFRDGALMAHLGAPDMRHAIGYALHWPER---RDLPVA 287
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
LDLA LG L F APD A+ P++ L GG V +AA E+A++ F+ G+I +LD
Sbjct: 288 RLDLAALGQLNFRAPDDARYPALRLARWVMARGGLSGAVFNAAKERALDHFIAGRIGFLD 347
Query: 236 IFKVVELTCDKHRAD--LVSSP-SLEDILHYDGWARE 269
+ +VE D+ AD L+ +P +L+ + D AR+
Sbjct: 348 MAGLVEAVLDRFEADPGLIDAPMTLDTVTQTDHLARQ 384
>TIGR_CMR|ECH_0557 [details] [associations]
symbol:ECH_0557 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 ProtClustDB:PRK05447 OMA:LYDIPFD
RefSeq:YP_507369.1 ProteinModelPortal:Q2GGR4 STRING:Q2GGR4
GeneID:3927955 KEGG:ech:ECH_0557 PATRIC:20576580
BioCyc:ECHA205920:GJNR-559-MONOMER Uniprot:Q2GGR4
Length = 386
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 112/281 (39%), Positives = 170/281 (60%)
Query: 1 PTVAAIEAG-KDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGA 59
P I +G K IALANKE+++ GG +L LA + N+ +P DSEH+A++Q + +
Sbjct: 106 PMTYLINSGIKVIALANKESIVCGGTLLLSLAKEKNVNIVPVDSEHNAIYQILSSSKKN- 164
Query: 60 LWRIILTASDWPV-----EKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHY 114
L +I LTAS P+ +++K +TV D +KHPIW +GKKI++DSAT+ NK LE+IEA+Y
Sbjct: 165 LEKITLTASGGPLLSMDYDQIKNVTVQDTVKHPIWKMGKKISVDSATMINKSLEIIEAYY 224
Query: 115 LFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTW 174
F + ++I+IHP+SI+H+++ D + I + DM+IP++YT+SWP+R S +
Sbjct: 225 FFSIKAEKLDIIIHPESIIHAIVSYVDGASIAFMSVPDMKIPIMYTLSWPDR---SAILC 281
Query: 175 PPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTG--VLSAANEKAVELFVNGKIS 232
L+LA LTF+ PD K P + L + + +L+AANE AV+ F+N KI
Sbjct: 282 KKLNLASCNQLTFIKPDVYKFPGIKLGFEVLKTSNVHANSIILNAANEVAVDAFLNKKIR 341
Query: 233 YLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTAS 273
+LDI VV T + ++S L IL D +R +S
Sbjct: 342 FLDIVSVVCETLNLVNYGRINS--LSSILDCDLVSRRVASS 380
>TIGR_CMR|SO_1635 [details] [associations]
symbol:SO_1635 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0008615 "pyridoxine biosynthetic process" evidence=ISS]
[GO:0009228 "thiamine biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0070402 eggNOG:COG0743 KO:K00099
GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525
Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243 OMA:AHPNWVM
ProtClustDB:PRK05447 HOGENOM:HOG000007221 RefSeq:NP_717246.1
ProteinModelPortal:Q8EGG9 SMR:Q8EGG9 GeneID:1169429
KEGG:son:SO_1635 PATRIC:23522904 Uniprot:Q8EGG9
Length = 396
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 120/289 (41%), Positives = 165/289 (57%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQC----IQG-- 54
PT+AA++AGK + LANKE ++ G + LP DSEH+A+FQC +Q
Sbjct: 108 PTLAAVKAGKRVLLANKEALVMSGELFIEATRASGATLLPVDSEHNAIFQCLPEEVQSNL 167
Query: 55 ----LPEGALWRIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + I+LT S P + + +T A A KHP W++G KI++DSAT+ NK
Sbjct: 168 GRCDLAASGISHILLTGSGGPFLTAELSNLAAMTPAQACKHPNWSMGPKISVDSATMMNK 227
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF D +++VIHPQS++HSM++ +D SVI Q+G DMR P+ + MS+P+
Sbjct: 228 GLEFIEARWLFNTQKDQLKVVIHPQSVIHSMVQYRDGSVIAQMGNPDMRTPIAHCMSYPQ 287
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
RI S V PLD K+G L+F PD + P + L A G T VL+AANE AVE
Sbjct: 288 RIR-SGVE--PLDFFKVGQLSFCEPDFNRFPCLALAIEACSQGQEATTVLNAANEIAVEA 344
Query: 226 FVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL 274
F+ GKI + I K+ E C + S+EDI+ D R Y L
Sbjct: 345 FLQGKIGFTHIGKINE-DC-LLSVPKQAMASIEDIIALDAQTRIYAREL 391
>UNIPROTKB|P45568 [details] [associations]
symbol:dxr "Dxr" species:83333 "Escherichia coli K-12"
[GO:0070402 "NADPH binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0008299 "isoprenoid
biosynthetic process" evidence=IEA] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=IEA;IDA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IDA] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006744 EMBL:U70214
GO:GO:0070402 eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
HOGENOM:HOG000007221 EMBL:AB013300 EMBL:D13334 PIR:E64741
RefSeq:NP_414715.1 RefSeq:YP_488475.1 PDB:1JVS PDB:1K5H PDB:1ONN
PDB:1ONO PDB:1ONP PDB:1Q0H PDB:1Q0L PDB:1Q0Q PDB:1T1R PDB:1T1S
PDB:2EGH PDB:3ANL PDB:3ANM PDB:3ANN PDB:3R0I PDBsum:1JVS
PDBsum:1K5H PDBsum:1ONN PDBsum:1ONO PDBsum:1ONP PDBsum:1Q0H
PDBsum:1Q0L PDBsum:1Q0Q PDBsum:1T1R PDBsum:1T1S PDBsum:2EGH
PDBsum:3ANL PDBsum:3ANM PDBsum:3ANN PDBsum:3R0I
ProteinModelPortal:P45568 SMR:P45568 DIP:DIP-9484N IntAct:P45568
PRIDE:P45568 EnsemblBacteria:EBESCT00000003838
EnsemblBacteria:EBESCT00000014771 GeneID:12930757 GeneID:945019
KEGG:ecj:Y75_p0169 KEGG:eco:b0173 PATRIC:32115455 EchoBASE:EB2575
EcoGene:EG12715 BioCyc:EcoCyc:DXPREDISOM-MONOMER
BioCyc:ECOL316407:JW0168-MONOMER BioCyc:MetaCyc:DXPREDISOM-MONOMER
SABIO-RK:P45568 BindingDB:P45568 ChEMBL:CHEMBL4091
EvolutionaryTrace:P45568 Genevestigator:P45568 Uniprot:P45568
Length = 398
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 117/284 (41%), Positives = 166/284 (58%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQC----IQ--- 53
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ IQ
Sbjct: 109 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 168
Query: 54 G---LPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
G L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 169 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 228
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 229 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 288
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ S V PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 289 RVN-SGVK--PLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 345
Query: 226 FVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI + L+ + D+ ++D+L D ARE
Sbjct: 346 FLAQQIRFTDI-AALNLSV-LEKMDMREPQCVDDVLSVDANARE 387
>UNIPROTKB|P64012 [details] [associations]
symbol:dxr "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:1773 "Mycobacterium tuberculosis"
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0030145
"manganese ion binding" evidence=IDA] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=IDA] [GO:0050897 "cobalt ion binding" evidence=IDA]
[GO:0051483 "terpenoid biosynthetic process,
mevalonate-independent" evidence=IMP] [GO:0051484 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway
involved in terpenoid biosynthetic process" evidence=IDA]
[GO:0070402 "NADPH binding" evidence=IDA] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.40.50.720 GO:GO:0000287
GO:GO:0030145 GO:GO:0050897 EMBL:BX842581 GO:GO:0070402
eggNOG:COG0743 KO:K00099 GO:GO:0030604 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:AHPNWVM ProtClustDB:PRK05447 HOGENOM:HOG000007221 PIR:A70923
RefSeq:NP_217386.2 RefSeq:NP_337449.2 RefSeq:YP_006516323.1
PDB:2C82 PDB:2JCV PDB:2JCX PDB:2JCY PDB:2JD0 PDB:2JD1 PDB:2JD2
PDB:2Y1C PDB:2Y1D PDB:2Y1E PDB:2Y1F PDB:2Y1G PDB:3RAS PDB:4A03
PDB:4AIC PDBsum:2C82 PDBsum:2JCV PDBsum:2JCX PDBsum:2JCY
PDBsum:2JD0 PDBsum:2JD1 PDBsum:2JD2 PDBsum:2Y1C PDBsum:2Y1D
PDBsum:2Y1E PDBsum:2Y1F PDBsum:2Y1G PDBsum:3RAS PDBsum:4A03
PDBsum:4AIC ProteinModelPortal:P64012 SMR:P64012 PRIDE:P64012
EnsemblBacteria:EBMYCT00000000352 EnsemblBacteria:EBMYCT00000071333
GeneID:13317662 GeneID:887800 GeneID:925338 KEGG:mtc:MT2938
KEGG:mtu:Rv2870c KEGG:mtv:RVBD_2870c PATRIC:18128232
TubercuList:Rv2870c BindingDB:P64012 ChEMBL:CHEMBL5630
EvolutionaryTrace:P64012 GO:GO:0051484 Uniprot:P64012
Length = 413
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 111/276 (40%), Positives = 158/276 (57%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+AA++ G +ALANKE+++AGG +L A I +P DSEHSA+ QC++G +
Sbjct: 112 PTLAALKTGARLALANKESLVAGGSLVLRAARPGQI--VPVDSEHSALAQCLRGGTPDEV 169
Query: 61 WRIILTASD-----WPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
+++LTAS W ++ +T A HP W++G T++SA+L NKGLEVIE H L
Sbjct: 170 AKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLL 229
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
FG YD I++V+HPQSI+HSM+ D S I Q DM++P+ + WP R+ +
Sbjct: 230 FGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA-- 287
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
D S F DT P+V L AG AGG MT V +AANE+A F+ G+I +
Sbjct: 288 -CDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPA 346
Query: 236 IFKVVELTCDKHRAD--LVSSPSLEDILHYDGWARE 269
I ++ H AD V +++D+L WARE
Sbjct: 347 IVGIIADVL--HAADQWAVEPATVDDVLDAQRWARE 380
>TIGR_CMR|CPS_1559 [details] [associations]
symbol:CPS_1559 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0070402
eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
HOGENOM:HOG000007221 RefSeq:YP_268301.1 ProteinModelPortal:Q485G4
SMR:Q485G4 STRING:Q485G4 GeneID:3520686 KEGG:cps:CPS_1559
PATRIC:21466325 BioCyc:CPSY167879:GI48-1640-MONOMER Uniprot:Q485G4
Length = 411
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 107/289 (37%), Positives = 165/289 (57%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQG------ 54
PT+AA+ AGK + LANKE ++ G + + LP DSEH+A+FQC+
Sbjct: 112 PTLAAVNAGKRVLLANKEALVTSGAIFMAAVKASGAELLPIDSEHNAIFQCLPSQQQAEI 171
Query: 55 ----LPEGALWRIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + +I+LT S P ++ ++ +T + A HP W +G+KI++DSAT+ NK
Sbjct: 172 GECQLLANGISKILLTGSGGPFRTRAIDTLESVTPSQACAHPNWDMGRKISVDSATMMNK 231
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF ++I++V+HPQS +HSM++ +D SVI Q+G DMR P+ + +S+PE
Sbjct: 232 GLEFIEAKWLFNVEAEDIQVVLHPQSTIHSMVQYKDGSVIAQMGNPDMRTPIAHALSFPE 291
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
RI S V PLD S F D + P++ L A + G L+AANE AV
Sbjct: 292 RIE-SGVA--PLDFFNTPSFEFQPVDFERYPNLELAIEACKQGQAACTALNAANEIAVAA 348
Query: 226 FVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL 274
F++ KI + DI+K+ E + K + V + + +++ D AR + +L
Sbjct: 349 FLDEKIKFTDIYKINETSVKKFVSQKVDN--INEVIALDEQARSFAQTL 395
>UNIPROTKB|Q9KPV8 [details] [associations]
symbol:dxr "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:243277 "Vibrio cholerae O1 biovar El Tor
str. N16961" [GO:0008299 "isoprenoid biosynthetic process"
evidence=ISS] [GO:0016616 "oxidoreductase activity, acting on the
CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS]
HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0070402
GO:GO:0016616 GO:GO:0008299 eggNOG:COG0743 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
PIR:D82099 RefSeq:NP_231885.1 ProteinModelPortal:Q9KPV8 SMR:Q9KPV8
DNASU:2613176 GeneID:2613176 KEGG:vch:VC2254 PATRIC:20083551
Uniprot:Q9KPV8
Length = 402
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 112/287 (39%), Positives = 162/287 (56%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQC----IQ--- 53
PT+AA++AGK + LANKE ++ G + + + +P DSEH+A+FQC IQ
Sbjct: 109 PTMAAVKAGKRVLLANKEALVMSGQLFIDAVAQSGAELMPVDSEHNAIFQCLPTEIQTQL 168
Query: 54 G---LPEGALWRIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
G L + + I+LT S P + + +T A+ HP W++G KI++DSAT+ NK
Sbjct: 169 GRCDLSQHGIDHILLTGSGGPFRYSDLATLDSVTPEQAIAHPNWSMGPKISVDSATMMNK 228
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF + ++++IHPQS++HSM++ QD SVI QLG DM P+ Y M++PE
Sbjct: 229 GLEYIEAKWLFNTSREQLKVLIHPQSVIHSMVQYQDGSVIAQLGEPDMATPISYAMAYPE 288
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ P LD +L LTFM D A+ P + L A G T L+AANE AV+
Sbjct: 289 RVTAGV---PALDFTRLQQLTFMEVDFARYPCLQLAMDACFLGQHATTSLNAANEVAVDA 345
Query: 226 FVNGKISYLDIFKVVELTCDKHRAD--LVSSPSLEDILHYDGWAREY 270
F+ KI + DI + + K A + LE +L D AR +
Sbjct: 346 FLKRKIRFTDIALINDQVLSKVCATNTQLHCRDLESLLELDTMARHF 392
>TIGR_CMR|VC_2254 [details] [associations]
symbol:VC_2254 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0070402 GO:GO:0016616 GO:GO:0008299
eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447 PIR:D82099
RefSeq:NP_231885.1 ProteinModelPortal:Q9KPV8 SMR:Q9KPV8
DNASU:2613176 GeneID:2613176 KEGG:vch:VC2254 PATRIC:20083551
Uniprot:Q9KPV8
Length = 402
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 112/287 (39%), Positives = 162/287 (56%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQC----IQ--- 53
PT+AA++AGK + LANKE ++ G + + + +P DSEH+A+FQC IQ
Sbjct: 109 PTMAAVKAGKRVLLANKEALVMSGQLFIDAVAQSGAELMPVDSEHNAIFQCLPTEIQTQL 168
Query: 54 G---LPEGALWRIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
G L + + I+LT S P + + +T A+ HP W++G KI++DSAT+ NK
Sbjct: 169 GRCDLSQHGIDHILLTGSGGPFRYSDLATLDSVTPEQAIAHPNWSMGPKISVDSATMMNK 228
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF + ++++IHPQS++HSM++ QD SVI QLG DM P+ Y M++PE
Sbjct: 229 GLEYIEAKWLFNTSREQLKVLIHPQSVIHSMVQYQDGSVIAQLGEPDMATPISYAMAYPE 288
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ P LD +L LTFM D A+ P + L A G T L+AANE AV+
Sbjct: 289 RVTAGV---PALDFTRLQQLTFMEVDFARYPCLQLAMDACFLGQHATTSLNAANEVAVDA 345
Query: 226 FVNGKISYLDIFKVVELTCDKHRAD--LVSSPSLEDILHYDGWAREY 270
F+ KI + DI + + K A + LE +L D AR +
Sbjct: 346 FLKRKIRFTDIALINDQVLSKVCATNTQLHCRDLESLLELDTMARHF 392
>TIGR_CMR|APH_0440 [details] [associations]
symbol:APH_0440 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0030604 "1-deoxy-D-xylulose-5-phosphate
reductoisomerase activity" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0070402 eggNOG:COG0743 KO:K00099
GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525
Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
ProtClustDB:PRK05447 RefSeq:YP_505043.1 ProteinModelPortal:Q2GKQ8
STRING:Q2GKQ8 GeneID:3930540 KEGG:aph:APH_0440 PATRIC:20949500
HOGENOM:HOG000007221 OMA:LYDIPFD BioCyc:APHA212042:GHPM-467-MONOMER
Uniprot:Q2GKQ8
Length = 385
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 108/268 (40%), Positives = 163/268 (60%)
Query: 6 IEAGKD-IALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-QGLPEGALWRI 63
IE+G IALA+KE+++ GG + A K + +P DSEH+AVF+ + QG ++I
Sbjct: 111 IESGVGTIALASKESVVCGGVLLRDAACKSGTRIVPVDSEHNAVFRLLSQG---DNPYKI 167
Query: 64 ILTASD-----WPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGA 118
+TAS W +++K +T+ DAL HP+W +GKKI++DSAT+ NK LEV+EA YLF
Sbjct: 168 TITASGGPFLHWSHDQLKSVTIEDALVHPVWKMGKKISVDSATMMNKALEVLEASYLFEL 227
Query: 119 GYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLD 178
GY I++VIHP+SI+H++ QD + + DM IP+L+ + WP R EV+ +D
Sbjct: 228 GYRKIDVVIHPESIVHALAFYQDGTSTALMSLPDMSIPILHALYWPHR---KEVSVREVD 284
Query: 179 LAKLGSLTFMAPDTAKVPSVNLCYAAGRAG--GTMTGVLSAANEKAVELFVNGKISYLDI 236
L G LTF+ PD + P++ + ++ + V +AANE AVE F+N +I++L+I
Sbjct: 285 LIAYGKLTFIRPDFERFPALKAAFDILQSSERDVASIVFNAANEVAVESFLNSEITFLEI 344
Query: 237 FKVVELTCDKHRADLVSSPSLEDILHYD 264
+V +K VSS L DI+ YD
Sbjct: 345 VNIVLHVMNKVPYGKVSS--LADIMEYD 370
>TIGR_CMR|NSE_0443 [details] [associations]
symbol:NSE_0443 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 GO:GO:0016853 GO:GO:0070402 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0743 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 ProtClustDB:PRK05447
RefSeq:YP_506328.1 ProteinModelPortal:Q2GDW8 STRING:Q2GDW8
GeneID:3931891 KEGG:nse:NSE_0443 PATRIC:22680939 OMA:RIGINNA
BioCyc:NSEN222891:GHFU-464-MONOMER Uniprot:Q2GDW8
Length = 389
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 95/268 (35%), Positives = 143/268 (53%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
P +AI G +A +NKE+++ GG +LP K +P DSEH AV + ++ P ++
Sbjct: 107 PIYSAISQGIKVATSNKESLVCGGSLLLPFVDK----IIPLDSEHHAVAKLLRSKPIMSV 162
Query: 61 WRIILTASDWPV--EKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGA 118
I LTAS P ++ + +TVA AL HPIW +GKK ++DSAT+ NK LEV+EAHYLF
Sbjct: 163 SGITLTASGGPFFRKEKRNVTVACALAHPIWKMGKKNSVDSATMMNKVLEVVEAHYLFRI 222
Query: 119 GYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSW-PERIYCSEVTWPPL 177
+ I ++IHP++++H M++ D S + DMRI + ++ Y S T+ +
Sbjct: 223 PKEKISVLIHPEALIHGMVDFLDGSQHAFISLPDMRIGINNALAGLVGGGYESTYTYGRV 282
Query: 178 DLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIF 237
LA LTF A AK + G VLSA N+ AVE F+ GK+ + I
Sbjct: 283 PLATR-KLTFYA---AKEEEFRVLKFLGT---DQEIVLSAVNDLAVEDFLAGKLDFHSIP 335
Query: 238 KVVELTCDKHRADLVSSPSLEDILH-YD 264
+ DK + + ++ D+ YD
Sbjct: 336 DFISSGLDKFQYNKADVKNIGDVFSIYD 363
>TIGR_CMR|CJE_1535 [details] [associations]
symbol:CJE_1535 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:195099 "Campylobacter jejuni RM1221"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 OMA:FIDGSVM
GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525
Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
ProtClustDB:PRK05447 RefSeq:YP_179520.1 ProteinModelPortal:Q5HT65
STRING:Q5HT65 GeneID:3232163 KEGG:cjr:CJE1535 PATRIC:20044860
BioCyc:CJEJ195099:GJC0-1563-MONOMER Uniprot:Q5HT65
Length = 356
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 91/277 (32%), Positives = 149/277 (53%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALW 61
T+ A E GK+IALANKE+++ G F+ KFLP DSEH+A+ ++G A
Sbjct: 97 TLKAKELGKNIALANKESLVVAGSFL------KGAKFLPVDSEHAALKFLLEGKKNIA-- 148
Query: 62 RIILTASD-----WPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLF 116
++ +TAS + ++ + ++++ DALKHP W +G KITIDSAT+ NK E+IEA++L+
Sbjct: 149 KLYITASGGAFYKYKIKDLNQVSLKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLY 208
Query: 117 GAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPP 176
+ I+ +I P+S++H+M E ++ + ADM++ + + + E
Sbjct: 209 D--FKEIDALIEPRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEA---- 262
Query: 177 LDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDI 236
+D +K+ +L F T K P L + + +++AANE V F+ K +LDI
Sbjct: 263 VDFSKMPALKFHPISTKKYPIFKLKNTFLKEPN-LGVIINAANEVGVYNFLENKSGFLDI 321
Query: 237 FKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTAS 273
K + D +SS +E++ YD REY S
Sbjct: 322 AKCIFKALDHFGVPKISS--IEEVFEYDFKTREYLRS 356
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 285 285 0.00085 115 3 11 22 0.37 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 619 (66 KB)
Total size of DFA: 216 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.93u 0.08s 21.01t Elapsed: 00:00:01
Total cpu time: 20.93u 0.08s 21.01t Elapsed: 00:00:01
Start: Sat May 11 07:33:03 2013 End: Sat May 11 07:33:04 2013