BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040690
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R0K|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|C Chain C, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|D Chain D, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0L|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
Length = 388
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 173/281 (61%), Gaps = 10/281 (3%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALW 61
T+AAI GK +ALANKE++++ G ++ +H LP DSEH+A+FQC +
Sbjct: 110 TLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVR 169
Query: 62 RIILTASDWPVE-----KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLF 116
RII+TAS P +M +T A++HP W++G KI+IDSAT+ NKGLE+IEA +LF
Sbjct: 170 RIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAFHLF 229
Query: 117 GAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPP 176
+ EI++HPQS++HSM+E D S++ Q+G DMR P+ +T++WP+R+ E
Sbjct: 230 QIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRM---ETPAES 286
Query: 177 LDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDI 236
LD KL + F APD + P++ L + ++GG V++AANE AV F++ KI +LDI
Sbjct: 287 LDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDI 346
Query: 237 FKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLS 277
K+VE T D + + SLED+ D AR A+L S
Sbjct: 347 AKIVEKTLDHYTP--ATPSSLEDVFAIDNEARIQAAALMES 385
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 227 bits (578), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 174/290 (60%), Gaps = 25/290 (8%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKH-NIKFLPADSEHSAVFQCIQG---LPE 57
T+ AI K +ALANKE++++ G F+ L + H N K +P DSEHSA+FQC+ L
Sbjct: 190 TMYAIMNNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVLKT 249
Query: 58 GALW----------RIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATL 102
L +I L +S P ++++K +T +ALKHP W +GKKITIDSAT+
Sbjct: 250 KCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATM 309
Query: 103 FNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMS 162
NKGLEVIE H+LF Y++IE+++H + I+HS +E D SVI Q+ + DM+IP+LY+++
Sbjct: 310 MNKGLEVIETHFLFDVDYNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLT 369
Query: 163 WPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKA 222
WP+RI + PLDLA++ +LTF P P + L Y AG G VL+A+NE A
Sbjct: 370 WPDRI---KTNLKPLDLAQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIA 426
Query: 223 VELFVNGKISYLDIFKVVELTCDKHRADLVSSPS---LEDILHYDGWARE 269
LF+N KI Y DI ++ + + VS S ++ IL WA++
Sbjct: 427 NNLFLNNKIKYFDISSIISQVLESFNSQKVSENSEDLMKQILQIHSWAKD 476
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
Length = 426
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 175/290 (60%), Gaps = 25/290 (8%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKH-NIKFLPADSEHSAVFQCIQG------ 54
T+ AI K +ALANKE++++ G F+ L + H N K +P DSEHSA+FQC+
Sbjct: 128 TMYAIMNNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVIKT 187
Query: 55 --LPEG-----ALWRIILTASDWP-----VEKMKEITVADALKHPIWTLGKKITIDSATL 102
L + + +I L +S P ++++K +T +ALKHP W +GKKITIDSAT+
Sbjct: 188 KCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATM 247
Query: 103 FNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMS 162
NKGLEVIE H+LF Y++IE+++H + I+HS +E D SVI Q+ + DM+IP+LY+++
Sbjct: 248 MNKGLEVIETHFLFDVDYNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLT 307
Query: 163 WPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKA 222
WP+RI + PLDLA++ +LTF P P + L Y AG G VL+A+NE A
Sbjct: 308 WPDRI---KTNLKPLDLAQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIA 364
Query: 223 VELFVNGKISYLDIFKVVELTCDKHRADLVSSPS---LEDILHYDGWARE 269
LF+N KI Y DI ++ + + VS S ++ IL WA++
Sbjct: 365 NNLFLNNKIKYFDISSIISQVLESFNSQKVSENSEDLMKQILQIHSWAKD 414
>pdb|3IIE|A Chain A, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis.
pdb|3IIE|B Chain B, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis
Length = 401
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 170/289 (58%), Gaps = 22/289 (7%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI--------- 52
T+AAI AGK + LANKE++I G + + + LP DSEH+A+FQ +
Sbjct: 113 TLAAIRAGKQVLLANKESLITCGKLFMDEVKRSRAQLLPIDSEHNAIFQSLPERIQRQLG 172
Query: 53 -QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKG 106
L E + RIILT S + P+ + ++T A HP W++G+KI++DSAT+ NKG
Sbjct: 173 YSSLNENGVSRIILTGSGGPFRETPLSQFSDVTPDQACAHPNWSMGRKISVDSATMMNKG 232
Query: 107 LEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPER 166
LE IEA +LF A + IE+V+HPQS++HSM+ D S++ Q+G DMR P+ + M++P R
Sbjct: 233 LEYIEARWLFNASAEQIEVVLHPQSVIHSMVRYHDGSILAQMGTPDMRTPIAHAMAYPMR 292
Query: 167 IYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELF 226
+ PLD K+G+LTF PD + P + L A AG T L+AANE +V F
Sbjct: 293 VSSG---VAPLDFCKVGALTFTTPDYQRYPCLKLAIDACNAGQAATTALNAANEISVMAF 349
Query: 227 VNGKISYLDIFKVVELTCDKHRADLVSSP-SLEDILHYDGWAREYTASL 274
++ KI + DI +V+ T + L+S P S+E++L D AR+ A +
Sbjct: 350 LDSKIRFTDI-EVINRTVVE--GLLLSEPTSVEEVLVIDRKARDVAAQV 395
>pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|B Chain B, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|C Chain C, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1ONN|A Chain A, Ispc Apo Structure
pdb|1ONN|B Chain B, Ispc Apo Structure
pdb|1ONO|A Chain A, Ispc Mn2+ Complex
pdb|1ONO|B Chain B, Ispc Mn2+ Complex
pdb|1ONP|A Chain A, Ispc Complex With Mn2+ And Fosmidomycin
pdb|1ONP|B Chain B, Ispc Complex With Mn2+ And Fosmidomycin
Length = 398
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ +
Sbjct: 109 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 168
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 169 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 228
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 229 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 288
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 289 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 345
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D+ ++D+L D ARE
Sbjct: 346 FLAQQIRFTDIAALNLSVLE------KMDMREPQCVDDVLSVDANARE 387
>pdb|2EGH|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
pdb|2EGH|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
Length = 424
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ +
Sbjct: 119 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 178
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 179 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 238
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 239 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 298
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 299 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 355
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D+ ++D+L D ARE
Sbjct: 356 FLAQQIRFTDIAALNLSVLE------KMDMREPQCVDDVLSVDANARE 397
>pdb|1T1R|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1R|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
Length = 398
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ +
Sbjct: 109 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 168
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 169 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 228
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 229 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 288
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 289 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 345
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D+ ++D+L D ARE
Sbjct: 346 FLAQQIRFTDIAALNLSVLE------KMDMREPQCVDDVLSVDANARE 387
>pdb|1Q0L|A Chain A, Crystal Structure Of Dxr In Complex With Fosmidomycin
pdb|1Q0Q|A Chain A, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
pdb|1Q0Q|B Chain B, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
Length = 406
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ +
Sbjct: 117 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 176
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 177 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 236
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 237 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 296
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 297 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 353
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D+ ++D+L D ARE
Sbjct: 354 FLAQQIRFTDIAALNLSVLE------KMDMREPQCVDDVLSVDANARE 395
>pdb|3R0I|A Chain A, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
pdb|3R0I|B Chain B, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
Length = 410
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ +
Sbjct: 121 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 180
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 181 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 240
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 241 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 300
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 301 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 357
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D+ ++D+L D ARE
Sbjct: 358 FLAQQIRFTDIAALNLSVLE------KMDMREPQCVDDVLSVDANARE 399
>pdb|3ANL|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANL|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANN|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
pdb|3ANN|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
Length = 420
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + + LP DSEH+A+FQ +
Sbjct: 119 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 178
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + +T A +HP W++G+KI++DSAT+ NK
Sbjct: 179 GYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNK 238
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A +E++IHPQS++HSM+ QD SV+ QLG DMR P+ +TM+WP
Sbjct: 239 GLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPN 298
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 299 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 355
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D+ ++D+L D ARE
Sbjct: 356 FLAQQIRFTDIAALNLSVLE------KMDMREPQCVDDVLSVDANARE 397
>pdb|2C82|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2C82|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
Length = 413
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 158/276 (57%), Gaps = 14/276 (5%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+AA++ G +ALANKE+++AGG +L A I +P DSEHSA+ QC++G +
Sbjct: 112 PTLAALKTGARLALANKESLVAGGSLVLRAARPGQI--VPVDSEHSALAQCLRGGTPDEV 169
Query: 61 WRIILTASD-----WPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
+++LTAS W ++ +T A HP W++G T++SA+L NKGLEVIE H L
Sbjct: 170 AKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLL 229
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
FG YD I++V+HPQSI+HSM+ D S I Q DM++P+ + WP R+ +
Sbjct: 230 FGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA-- 287
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
D S F DT P+V L AG AGG MT V +AANE+A F+ G+I +
Sbjct: 288 -CDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPA 346
Query: 236 IFKVVELTCDKHRAD--LVSSPSLEDILHYDGWARE 269
I ++ H AD V +++D+L WARE
Sbjct: 347 IVGIIADVL--HAADQWAVEPATVDDVLDAQRWARE 380
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCV|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JD1|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD1|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD2|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|2JD2|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|3RAS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|3RAS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|2Y1C|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1C|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1D|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1D|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1E|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1E|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1F|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1F|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1G|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|2Y1G|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|4A03|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4A03|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4AIC|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
pdb|4AIC|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
Length = 398
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 158/276 (57%), Gaps = 14/276 (5%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+AA++ G +ALANKE+++AGG +L A I +P DSEHSA+ QC++G +
Sbjct: 121 PTLAALKTGARLALANKESLVAGGSLVLRAARPGQI--VPVDSEHSALAQCLRGGTPDEV 178
Query: 61 WRIILTASD-----WPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
+++LTAS W ++ +T A HP W++G T++SA+L NKGLEVIE H L
Sbjct: 179 AKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLL 238
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
FG YD I++V+HPQSI+HSM+ D S I Q DM++P+ + WP R+ +
Sbjct: 239 FGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA-- 296
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
D S F DT P+V L AG AGG MT V +AANE+A F+ G+I +
Sbjct: 297 -CDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPA 355
Query: 236 IFKVVELTCDKHRAD--LVSSPSLEDILHYDGWARE 269
I ++ H AD V +++D+L WARE
Sbjct: 356 IVGIIADVL--HAADQWAVEPATVDDVLDAQRWARE 389
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCX|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCY|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JCY|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JD0|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
pdb|2JD0|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
Length = 398
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 158/276 (57%), Gaps = 14/276 (5%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
PT+AA++ G +ALANKE+++AGG +L A I +P +SEHSA+ QC++G +
Sbjct: 121 PTLAALKTGARLALANKESLVAGGSLVLRAARPGQI--VPVNSEHSALAQCLRGGTPDEV 178
Query: 61 WRIILTASD-----WPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
+++LTAS W ++ +T A HP W++G T++SA+L NKGL+VIE H L
Sbjct: 179 AKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLQVIETHLL 238
Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
FG YD I++V+HPQSI+HSM+ D S I Q DM++P+ + WP R+ +
Sbjct: 239 FGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA-- 296
Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
D S F DT P+V L AG AGG MT V +AANE+A F+ G+I +
Sbjct: 297 -CDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPA 355
Query: 236 IFKVVELTCDKHRAD--LVSSPSLEDILHYDGWARE 269
I ++ H AD V +++D+L WARE
Sbjct: 356 IVGIIADVL--HAADQWAVEPATVDDVLDAQRWARE 389
>pdb|1JVS|A Chain A, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
pdb|1JVS|B Chain B, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
Length = 400
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 153/288 (53%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + LP DSEH+A+FQ +
Sbjct: 109 PTLAAIRAGKTILLANKESLVTCGRLFXDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 168
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + T A +HP W+ G+KI++DSAT NK
Sbjct: 169 GYADLEQNGVVSILLTGSGGPFRETPLRDLATXTPDQACRHPNWSXGRKISVDSATXXNK 228
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A E++IHPQS++HS + QD SV+ QLG D R P+ +T +WP
Sbjct: 229 GLEYIEARWLFNASASQXEVLIHPQSVIHSXVRYQDGSVLAQLGEPDXRTPIAHTXAWPN 288
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 289 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAXEAFEQGQAATTALNAANEITVAA 345
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D ++D+L D ARE
Sbjct: 346 FLAQQIRFTDIAALNLSVLE------KXDXREPQCVDDVLSVDANARE 387
>pdb|1Q0H|A Chain A, Crystal Structure Of Selenomethionine-Labelled Dxr In
Complex With Fosmidomycin
Length = 406
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 153/288 (53%), Gaps = 28/288 (9%)
Query: 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI-------- 52
PT+AAI AGK I LANKE+++ G + + LP DSEH+A+FQ +
Sbjct: 117 PTLAAIRAGKTILLANKESLVTCGRLFXDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNL 176
Query: 53 --QGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNK 105
L + + I+LT S + P+ + T A +HP W+ G+KI++DSAT NK
Sbjct: 177 GYADLEQNGVVSILLTGSGGPFRETPLRDLATXTPDQACRHPNWSXGRKISVDSATXXNK 236
Query: 106 GLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPE 165
GLE IEA +LF A E++IHPQS++HS + QD SV+ QLG D R P+ +T +WP
Sbjct: 237 GLEYIEARWLFNASASQXEVLIHPQSVIHSXVRYQDGSVLAQLGEPDXRTPIAHTXAWPN 296
Query: 166 RIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225
R+ PLD KL +LTF APD + P + L A G T L+AANE V
Sbjct: 297 RVNSG---VKPLDFCKLSALTFAAPDYDRYPCLKLAXEAFEQGQAATTALNAANEITVAA 353
Query: 226 FVNGKISYLDI----FKVVELTCDKHRADLVSSPSLEDILHYDGWARE 269
F+ +I + DI V+E + D ++D+L D ARE
Sbjct: 354 FLAQQIRFTDIAALNLSVLE------KXDXREPQCVDDVLSVDANARE 395
>pdb|3A06|A Chain A, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A06|B Chain B, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A14|A Chain A, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
pdb|3A14|B Chain B, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
Length = 376
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 155/284 (54%), Gaps = 19/284 (6%)
Query: 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALW 61
+A++E K + LANKE+++ GG + + + +P DSEHSA+FQ ++ PE +
Sbjct: 102 VLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME--PE--VE 157
Query: 62 RIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLF 116
+++LTAS DW + K+ D LKHP+W +G +IT+DSAT+ NK EV+EA LF
Sbjct: 158 KVVLTASGGALRDWKISKIDRARPEDVLKHPVWNMGARITVDSATMVNKAFEVLEAMELF 217
Query: 117 GAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPP 176
++ IE+ IH + ++H + D +V + DMRIP+ Y + +P R V P
Sbjct: 218 ELPFEKIEVKIHREGLVHGAVVLPDGNVKMVVSPPDMRIPISYALFYPRR-----VALEP 272
Query: 177 LDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDI 236
L + SL+F PD K P+ L + T +AA+E AVE F+ G+I + I
Sbjct: 273 FFLRTI-SLSFEDPDPEKYPAFFLLKEIKDSYALRTA-FNAADEVAVEAFLKGRIRFGGI 330
Query: 237 FKVVELTCDKHRADLVSSPSLEDI--LHYDGWAREYTASLQLSS 278
+V+E T ++ + +L+D+ +H++ + + LSS
Sbjct: 331 HRVIEKTLEEFQG-YPQPRTLDDVERIHFEAIKKAERVTEWLSS 373
>pdb|1Q13|A Chain A, Crystal Structure Of Rabbit 20alpha Hyroxysteroid
Dehydrogenase In Ternary Complex With Nadp And
Testosterone
pdb|1Q13|B Chain B, Crystal Structure Of Rabbit 20alpha Hyroxysteroid
Dehydrogenase In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 219 NEKAVELFVNGKIS-----YLDIFKVVELTCDKHRADLVSSPSLEDIL 261
NEK V L + KI+ DIF +L C HR +LV PSLED L
Sbjct: 57 NEKEVGLAIRSKIADGTVKREDIFYTSKLWCTFHRPELV-RPSLEDSL 103
>pdb|1Q5M|A Chain A, Binary Complex Of Rabbit 20alpha-Hydroxysteroid
Dehydrogenase With Nadph
pdb|1Q5M|B Chain B, Binary Complex Of Rabbit 20alpha-Hydroxysteroid
Dehydrogenase With Nadph
Length = 322
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 219 NEKAVELFVNGKIS-----YLDIFKVVELTCDKHRADLVSSPSLEDIL 261
NEK V L + KI+ DIF +L C HR +LV PSLED L
Sbjct: 56 NEKEVGLAIRSKIADGTVKREDIFYTSKLWCTFHRPELV-RPSLEDSL 102
>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With
10z-Hymenialdisine
Length = 339
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 39 LPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKK 94
L D EH +F IQ + E + K IT+ +ALKHP + L KK
Sbjct: 296 LSQDVEHERLFDLIQKMLE--------------YDPAKRITLREALKHPFFDLLKK 337
>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In
Complex With A Novel Substituted Indole Inhibitor
Length = 339
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 39 LPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKK 94
L D EH +F IQ + E + K IT+ +ALKHP + L KK
Sbjct: 296 LSQDVEHERLFDLIQKMLE--------------YDPAKRITLREALKHPFFDLLKK 337
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 64 ILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLE 108
I +SDWP K + V+D K T G ++T+ ++ LF + +E
Sbjct: 203 IADSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVATSELFKERIE 247
>pdb|3QHQ|A Chain A, Structure Of Crispr-Associated Protein Csn2
pdb|3QHQ|B Chain B, Structure Of Crispr-Associated Protein Csn2
Length = 229
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 77 EITVADALKHPIWTLGKKITIDSATLFNKGLEVIEA-HYL 115
EIT+ + +K LG KI S T+F K E+I+ HYL
Sbjct: 124 EITILELIK----ALGVKIETQSDTIFEKCFEIIQVYHYL 159
>pdb|3UPY|A Chain A, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway.
pdb|3UPY|B Chain B, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway
Length = 445
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKF-LPADSEHSAVFQCIQ 53
+AAI GK + + N E + GP++ A K + + L A E S+ + I+
Sbjct: 126 IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIE 177
>pdb|3UPL|A Chain A, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway.
pdb|3UPL|B Chain B, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway
Length = 446
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKF-LPADSEHSAVFQCIQ 53
+AAI GK + + N E + GP++ A K + + L A E S+ + I+
Sbjct: 126 IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIE 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,629,973
Number of Sequences: 62578
Number of extensions: 352408
Number of successful extensions: 834
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 29
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)