Query 040690
Match_columns 285
No_of_seqs 120 out of 1030
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12464 1-deoxy-D-xylulose 5- 100.0 8E-127 2E-131 917.7 27.3 276 1-284 102-382 (383)
2 COG0743 Dxr 1-deoxy-D-xylulose 100.0 9E-127 2E-131 908.4 24.2 272 1-277 105-382 (385)
3 TIGR00243 Dxr 1-deoxy-D-xylulo 100.0 5E-126 1E-130 912.8 27.1 271 1-276 109-385 (389)
4 PLN02696 1-deoxy-D-xylulose-5- 100.0 1E-125 2E-130 925.4 27.9 285 1-285 165-454 (454)
5 PRK05447 1-deoxy-D-xylulose 5- 100.0 7E-119 2E-123 865.0 27.7 274 1-280 107-385 (385)
6 PF08436 DXP_redisom_C: 1-deox 100.0 3.7E-52 8.1E-57 323.3 2.4 79 38-116 1-84 (84)
7 PF13288 DXPR_C: DXP reductois 100.0 2.5E-47 5.5E-52 316.7 6.7 121 148-271 1-121 (121)
8 PRK06349 homoserine dehydrogen 90.4 0.32 6.9E-06 48.3 4.2 81 3-85 91-181 (426)
9 PF03447 NAD_binding_3: Homose 88.9 0.28 6E-06 39.4 2.1 37 3-39 77-115 (117)
10 PRK06813 homoserine dehydrogen 79.3 2.4 5.1E-05 41.5 4.1 112 3-121 109-237 (346)
11 PRK06270 homoserine dehydrogen 76.9 3 6.5E-05 40.2 4.0 122 3-128 112-247 (341)
12 PRK06392 homoserine dehydrogen 68.3 5.4 0.00012 38.6 3.5 112 3-121 103-230 (326)
13 PRK11579 putative oxidoreducta 62.1 1E+02 0.0023 29.1 10.9 132 2-149 81-228 (346)
14 COG2886 Uncharacterized small 60.7 3.2 6.9E-05 33.3 0.3 28 220-247 31-58 (88)
15 PF07635 PSCyt1: Planctomycete 55.8 12 0.00026 27.2 2.6 37 11-55 13-49 (59)
16 COG0460 ThrA Homoserine dehydr 53.1 11 0.00023 37.0 2.6 79 3-85 100-190 (333)
17 PF06506 PrpR_N: Propionate ca 48.9 15 0.00034 31.7 2.7 35 19-53 127-161 (176)
18 PRK13302 putative L-aspartate 44.6 40 0.00086 31.5 4.9 67 3-72 85-152 (271)
19 PRK13303 L-aspartate dehydroge 44.5 30 0.00065 32.1 4.1 68 3-71 79-148 (265)
20 TIGR03855 NAD_NadX aspartate d 44.1 66 0.0014 29.6 6.2 66 2-71 54-124 (229)
21 PRK08374 homoserine dehydrogen 37.2 27 0.00059 33.7 2.6 79 3-85 109-198 (336)
22 cd01800 SF3a120_C Ubiquitin-li 37.1 57 0.0012 24.3 3.9 38 87-126 1-41 (76)
23 PF07151 DUF1391: Protein of u 36.8 11 0.00025 26.7 0.0 13 11-23 2-14 (49)
24 KOG3969 Uncharacterized conser 36.5 30 0.00066 33.4 2.8 67 59-140 185-254 (310)
25 cd00209 DHFR Dihydrofolate red 33.2 88 0.0019 26.6 4.9 71 59-142 56-131 (158)
26 COG4821 Uncharacterized protei 29.6 14 0.0003 34.5 -0.7 11 274-284 110-120 (243)
27 COG4091 Predicted homoserine d 28.6 58 0.0012 32.9 3.3 34 2-35 119-152 (438)
28 PF10273 WGG: Pre-rRNA-process 26.3 93 0.002 24.2 3.5 66 192-260 10-79 (82)
29 cd06404 PB1_aPKC PB1 domain is 25.2 65 0.0014 25.7 2.4 31 91-128 49-79 (83)
30 PRK09436 thrA bifunctional asp 24.9 51 0.0011 35.8 2.4 79 3-85 565-658 (819)
31 PRK09983 pflD putative formate 23.0 4.2E+02 0.0091 28.9 8.8 64 197-264 374-465 (765)
32 PRK09466 metL bifunctional asp 22.8 61 0.0013 35.3 2.5 120 3-132 559-703 (810)
33 PHA02122 hypothetical protein 22.4 1E+02 0.0022 23.1 2.9 30 99-138 9-39 (65)
34 TIGR01774 PFL2-3 pyruvate form 21.3 5E+02 0.011 28.4 9.0 67 197-265 384-487 (786)
35 TIGR00105 L31 ribosomal protei 21.2 44 0.00096 25.3 0.8 22 83-105 39-60 (68)
No 1
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=7.7e-127 Score=917.66 Aligned_cols=276 Identities=47% Similarity=0.804 Sum_probs=264.1
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++|++.||+|||||||||||||+++++.++++|++|+|||||||||||||.|++.++|++|||||| ++|+++|
T Consensus 102 pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~iiPVDSEHsAIfQ~L~~~~~~~v~kiiLTASGGpFr~~~~e~l 181 (383)
T PRK12464 102 PTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLIPVDSEHSAIFQCLNGENNKEIDKLIVTASGGAFRDKTREEM 181 (383)
T ss_pred HHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEEeechhHHHHHHHccCCCcccccEEEEECCCcccCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999986678999999999 8999999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
++|||+|||+||||+||+||||||||||||||||||||||||+|+|||||||||||||||||+|.|||++||||.||||+
T Consensus 182 ~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~i~~d~I~vvIHPqSiVHsmVef~DGSv~aql~~pDMr~ 261 (383)
T PRK12464 182 ATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAHWLFDIPYEKIDVLIHKESIIHSLVEFIDGSVLAQLGAPDMRM 261 (383)
T ss_pred hCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCceeEEEEEcCccEEEEeCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|.+ ...++|||.++++|+|++||++|||||+|||+|+++||.+|+|||||||+||++||+|||+|+|
T Consensus 262 PI~yAL~yP~R~~---~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~~a~~~gg~~p~vlNAANEvAV~aFL~~kI~F~d 338 (383)
T PRK12464 262 PIQYAFHYPTRLP---SSYEKLNLLEIGSLHFEKPDLEKFPCLQYAYEAGKIGGTTPAVLNAANEIANALFLKNRIAFFD 338 (383)
T ss_pred HHHHHcCCccccC---CCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCceEEEEhhhHHHHHHHHcCCCCchh
Confidence 9999999999994 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 040690 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVP 284 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~~~~~~~ 284 (285)
|+++|+++|++++ ...++|||||+++|+|+|+++++++ +.-|.|
T Consensus 339 I~~ii~~~l~~~~--~~~~~sl~~i~~~d~~aR~~a~~~~---~~~~~~ 382 (383)
T PRK12464 339 IEKTIYATLEAHH--NVKDPSLDDILEADAWARRYANQLL---IKKSAP 382 (383)
T ss_pred HHHHHHHHHHhcc--ccCCCCHHHHHHHHHHHHHHHHHHH---hhCCCC
Confidence 9999999999996 3344599999999999999999976 444444
No 2
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=100.00 E-value=8.8e-127 Score=908.38 Aligned_cols=272 Identities=51% Similarity=0.840 Sum_probs=264.5
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++|+++||+|+|||||||||||+|+++.+|++|++|+|||||||||||||+|+...+|++|+|||| ++|+++|
T Consensus 105 pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L~~~~~~~v~~iiLTASGGpFR~~~~~~L 184 (385)
T COG0743 105 PTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCLQGETQKGVKKIILTASGGPFRDKSLEEL 184 (385)
T ss_pred HHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHcCccccCcceEEEEecCCCCcCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999889999999999 8999999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
.+|||+|||+|||||||+|||||||||||||||+||||||||+|+|+|||||||||||||||+|.|||++||||+||||+
T Consensus 185 ~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIEA~~LF~~~~~~IeVvIHPQSiIHsmV~~~DGSviAqlg~pDMr~ 264 (385)
T COG0743 185 ANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIEAHWLFGLPYEQIEVVIHPQSIIHSMVEYVDGSVIAQLGPPDMRT 264 (385)
T ss_pred ccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHHHHHHhCCCHHHeeEEEcccchheeeEEeccCCEEEecCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|.+ .++++|||.++++|+|++||++|||||+|||+|++.||++|++||||||+||++||+|||+|+|
T Consensus 265 PI~yAl~~P~R~~---~~~~~ldf~~~~~L~Fe~pD~~rfp~l~LA~~a~~~gg~~~~vlNAANE~AV~aFL~~~I~F~d 341 (385)
T COG0743 265 PISYALAYPERVP---SAVEPLDFTKLSALTFEPPDTDRFPCLKLAYDAGEAGGAMPTVLNAANEVAVAAFLAGKIGFLD 341 (385)
T ss_pred HHHHHhcCCcccc---cCccccchhhcCcceeeCCChhhcchHHHHHHHHHcCCchhhhHhhhhHHHHHHHHhCCCCccc
Confidence 9999999999994 5688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCC-CCCCHHHHHHHHHHHHHHHHHHHHh
Q 040690 236 IFKVVELTCDKHRADLV-SSPSLEDILHYDGWAREYTASLQLS 277 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~-~~~sLedIl~iD~~aR~~a~~~~~~ 277 (285)
|+++|+++|+++. .. .+.|+|||+++|+|||+.+++.+..
T Consensus 342 I~~iie~~l~~~~--~~~~~~sld~vl~~D~~aR~~a~~~~~~ 382 (385)
T COG0743 342 IARIIEKALERHD--VYAEPQSLDDVLEVDAEARERARECIAR 382 (385)
T ss_pred HHHHHHHHHHhcc--cCCCCCCHHHHHHhhHHHHHHHHHHHhh
Confidence 9999999999997 34 6899999999999999999876654
No 3
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=100.00 E-value=5.1e-126 Score=912.82 Aligned_cols=271 Identities=50% Similarity=0.757 Sum_probs=261.4
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhc-CCCCCccceEEEecc-----CCChhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQ-GLPEGALWRIILTAS-----DWPVEK 74 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~-~~~~~~v~~iilTAS-----~~~~~~ 74 (285)
||++|++.||+|||||||||||||+++++.++++|++|+|||||||||||||. |++.++|++|||||| ++|+++
T Consensus 109 pt~~Ai~~gk~iaLANKEsLV~aG~li~~~a~~~~~~I~PVDSEHsAIfQ~L~~g~~~~~v~kiiLTASGGpFr~~~~e~ 188 (389)
T TIGR00243 109 PTLAAIRAGKTIALANKESLVTAGHLFLDAVKKYGVQLLPVDSEHNAIFQSLQHGLEELGVVSIILTASGGAFRDTPLED 188 (389)
T ss_pred HHHHHHHCCCcEEEechhHHHhhHHHHHHHHHHcCCeEEeecchHhHHHHHcccCCCcccccEEEEECCCcccCCCCHHH
Confidence 79999999999999999999999999999999999999999999999999999 765567999999999 899999
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcch
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMR 154 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr 154 (285)
|++|||+|||+||||+||+||||||||||||||||||||||||+|+|||||||||||||||||+|.|||++||||.||||
T Consensus 189 l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vvIHpqSiIHsmVef~DGSv~aql~~pDMr 268 (389)
T TIGR00243 189 LPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYIEARWLFGASAEQIDVLIHPQSIIHSMVEFQDGSVIAQLGEPDMR 268 (389)
T ss_pred HhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCceeEEEEEcCccEEEEeCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCc
Q 040690 155 IPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYL 234 (285)
Q Consensus 155 ~PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~ 234 (285)
+||+|||+||+|.+ ...++|||.++++|+|++||++|||||+|||+|+++||.+|+|||||||+||++||+|||+|+
T Consensus 269 lPI~yAL~yP~R~~---~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~ea~~~gg~~p~vlNAANEvAV~~FL~~kI~F~ 345 (389)
T TIGR00243 269 LPIAYAMAWPNRVN---SGVKPLDLCKLSALTFEEPDFDRYPCLKLAMEAFKAGQAATTVLNAANEVAVAAFLAQQIRFL 345 (389)
T ss_pred HHHHHHcCCccccc---CCCCCcCccccCCCeeeCCChhhCchHHHHHHHHhcCCCceEEEEHHHHHHHHHHHcCCCCcc
Confidence 99999999999994 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040690 235 DIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQL 276 (285)
Q Consensus 235 dI~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~ 276 (285)
||+++|+++|++++ ...++|||||+++|+|+|++|+++..
T Consensus 346 dI~~~i~~~l~~~~--~~~~~sledi~~~d~~aR~~a~~~~~ 385 (389)
T TIGR00243 346 DIAALISKVLYRMQ--PRKPQSLEDVLEVDKNARETARKNVA 385 (389)
T ss_pred hHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999996 33456999999999999999998764
No 4
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=100.00 E-value=1.1e-125 Score=925.39 Aligned_cols=285 Identities=79% Similarity=1.274 Sum_probs=271.1
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++||++||+|+|||||||||||++|++.++++|++|+|||||||||||||+|++.++|+||||||| ++|+++|
T Consensus 165 pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e~l 244 (454)
T PLN02696 165 PTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVEKL 244 (454)
T ss_pred HHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEeecchhhHHHHHHccCCCccCccEEEEECCchhccCCCHHHH
Confidence 78999999999999999999999999999999999999999999999999999987778999999999 8999999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
++||++|||+||||+||+||||||||||||||||||||||||+|||+|||||||||||||||+|.|||++||||.||||+
T Consensus 245 ~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vvIHPqSiIHsmVef~DGS~~Aql~~pDMrl 324 (454)
T PLN02696 245 KEVKVADALKHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGADYDDIDIVIHPQSIIHSMVETQDSSVLAQLGWPDMRL 324 (454)
T ss_pred hCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECcCCeeeEEEEEcCCcEEEEecCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|.+.++..+++|||.++++|||++||++|||||+|||+|+++||.+|+|||||||+||++||+|||+|+|
T Consensus 325 PI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rfP~l~La~~a~~~gg~~~~vlNAANEvAV~~FL~~kI~F~d 404 (454)
T PLN02696 325 PILYTMSWPDRVPCSEITWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLD 404 (454)
T ss_pred HHHHHcCCccccccccCCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCceEEEEhhhHHHHHHHHcCCCCchh
Confidence 99999999999953225689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 040690 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA 285 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~~~~~~~~ 285 (285)
|+++|+++|+++.......+|||||+++|+|+|+++++++.+.|-.|+++
T Consensus 405 I~~~i~~~l~~~~~~~~~~~sl~~i~~~d~~aR~~a~~~~~~~~~~~~~~ 454 (454)
T PLN02696 405 IFKVIELTCEAHKEELVTSPSLEDILHYDLWAREYAAELVESGGLSPVVA 454 (454)
T ss_pred HHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999962111235999999999999999999999988888763
No 5
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=7e-119 Score=865.00 Aligned_cols=274 Identities=53% Similarity=0.862 Sum_probs=264.8
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++|+++||+|+|||||||||||++|++.++++|++|+|||||||||||||.+++.++|++|+|||| ++|+++|
T Consensus 107 ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh~ai~q~l~~~~~~~i~~iilTASGGpFr~~~~~~l 186 (385)
T PRK05447 107 PTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEHSAIFQCLPGEKQEGVEKIILTASGGPFRDWPLEEL 186 (385)
T ss_pred HHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHHHHHHHHhcCCCccccceEEEecCCCcccCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999987778999999999 8999999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
++|||+|||+||||+||+|||||||||||||||+||||||||+|+|+|+|||||||||||||+|+|||++||||.||||+
T Consensus 187 ~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IEA~~Lf~~~~~~I~vvIHpqSivHsmVef~DGsv~aql~~pDMr~ 266 (385)
T PRK05447 187 ANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIEAHWLFGLPYEQIEVVIHPQSIIHSMVEYVDGSVLAQLGPPDMRL 266 (385)
T ss_pred hcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHhHHHHcCCChhhEEEEECCcCceeEEEEEeCCcEEEeeCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|.+ ...++|||.++++|||++||++|||||+|||+|+++||.+|+|||||||+||++||+|||+|+|
T Consensus 267 pI~yaL~~P~R~~---~~~~~ld~~~~~~L~F~~pd~~rfp~l~La~~a~~~g~~~~~vlNAANEvAV~~FL~~kI~F~d 343 (385)
T PRK05447 267 PIAYALAYPERVP---SGVKPLDLTKLGTLTFEPPDFERFPCLKLAYEALKAGGTAPAVLNAANEVAVAAFLAGKIGFLD 343 (385)
T ss_pred HHHHHcCCcccCC---CCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCceeEeEHHHHHHHHHHHcCCCCchh
Confidence 9999999999994 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 040690 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGR 280 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~~~ 280 (285)
|+++|+++|+++. ..++|||||+++|+|+|++|++++...+|
T Consensus 344 I~~~i~~~l~~~~---~~~~sl~~i~~~d~~aR~~a~~~~~~~~~ 385 (385)
T PRK05447 344 IADLIEKVLERHN---PEPPSLEDVLEADAEARERARELIARLAA 385 (385)
T ss_pred HHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999994 24679999999999999999998877654
No 6
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=100.00 E-value=3.7e-52 Score=323.29 Aligned_cols=79 Identities=66% Similarity=1.025 Sum_probs=73.4
Q ss_pred EeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHH
Q 040690 38 FLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEA 112 (285)
Q Consensus 38 i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA 112 (285)
|+|||||||||||||.+++.++|++|+|||| ++++++|++||++|||+||||+||+|||||||||||||||||||
T Consensus 1 i~PvDSEHsAifQ~L~~~~~~~v~~i~lTASGGpFr~~~~~~l~~vt~~~al~HP~W~MG~KITiDSATm~NKglEviEA 80 (84)
T PF08436_consen 1 ILPVDSEHSAIFQCLQGEKREEVEKIILTASGGPFRDKPREELKNVTPEQALKHPNWSMGKKITIDSATMMNKGLEVIEA 80 (84)
T ss_dssp EEE-SHHHHHHHHHSGHHHHCTEEEEEEEE--STTTTSHHHHHTT--HHHHTSSSSSCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcccccHHHHHHHHCCCCCccccCEEEEECcchhhCCCCHHHHcCCCHHHHhhCCCCcCCCeeeechHHHHHHhHHHHHH
Confidence 7999999999999999998889999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 040690 113 HYLF 116 (285)
Q Consensus 113 ~~LF 116 (285)
||||
T Consensus 81 ~~LF 84 (84)
T PF08436_consen 81 HWLF 84 (84)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9999
No 7
>PF13288 DXPR_C: DXP reductoisomerase C-terminal domain; PDB: 3A14_A 3A06_A 3IIE_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A 2JCX_A 2Y1G_A ....
Probab=100.00 E-value=2.5e-47 Score=316.69 Aligned_cols=121 Identities=49% Similarity=0.805 Sum_probs=101.9
Q ss_pred cCCCcchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHH
Q 040690 148 LGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFV 227 (285)
Q Consensus 148 ~~~pDMr~PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL 227 (285)
||.||||+||+|||+||+|. +...+++||.++++|+|++||++|||||+||++|+++||++|+|||||||+||++||
T Consensus 1 ls~PDMrlPI~yAL~~P~r~---~~~~~~ld~~~~~~L~F~~pd~~rfP~l~LA~~a~~~gg~~~~vlNAANEvAV~aFL 77 (121)
T PF13288_consen 1 LSPPDMRLPIAYALSYPERL---PSPVEPLDFTKLGSLTFEEPDFERFPCLKLAYEALRKGGTAPIVLNAANEVAVEAFL 77 (121)
T ss_dssp E-SS-THHHHHHHHHTTS-----TTSS----CCCHEEEEEBE--TTT-CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHcCCcccC---CCCCCCCChhhccCceecCCChHhCcHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998 457899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Q 040690 228 NGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYT 271 (285)
Q Consensus 228 ~gkI~F~dI~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a 271 (285)
+|||+|+||+++|+++|+++......++|||||+++|+|||++|
T Consensus 78 ~~kI~F~~I~~~i~~~l~~~~~~~~~~~~ledi~~~d~~aR~~A 121 (121)
T PF13288_consen 78 EGKISFLDIPDIIEKVLERFKNSKINPNSLEDILEIDAWARRYA 121 (121)
T ss_dssp TTSS-TTHHHHHHHHHHHCCCCGGSCHSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHhhHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999732114689999999999999986
No 8
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.41 E-value=0.32 Score=48.30 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=58.0
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCC-------chhhHHHHHhcCCCCCccceEEEecc-CCChhh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPAD-------SEHSAVFQCIQGLPEGALWRIILTAS-DWPVEK 74 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvD-------SEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~~ 74 (285)
.+|+++||-|..+||..+..-|.-|.++|+++|+.+. .. .-...+-++|.+.+...|..| |-.+ ++=+++
T Consensus 91 ~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~-fEasV~ggiPii~~l~~~l~~~~I~~I~GI-lnGT~nyIl~~ 168 (426)
T PRK06349 91 LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY-FEAAVAGGIPIIKALREGLAANRITRVMGI-VNGTTNYILTK 168 (426)
T ss_pred HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE-EEEEeeccCchHHHHHhhcccCCeeEEEEE-EeCcHHHHHhh
Confidence 5899999999999999888889999999999998766 11 124555556655443344433 3333 555777
Q ss_pred h--hcCCHHHHhc
Q 040690 75 M--KEITVADALK 85 (285)
Q Consensus 75 l--~~vt~~~Al~ 85 (285)
| ...+.++||+
T Consensus 169 m~~~g~~f~~al~ 181 (426)
T PRK06349 169 MTEEGLSFEDALK 181 (426)
T ss_pred hhhcCCCHHHHHH
Confidence 7 4788888885
No 9
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=88.91 E-value=0.28 Score=39.37 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=32.1
Q ss_pred HHHHHcCCceeeecccchh--cccccchHHHhhcCCeEe
Q 040690 3 VAAIEAGKDIALANKETMI--AGGPFILPLAHKHNIKFL 39 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV--~aG~li~~~~~~~~~~i~ 39 (285)
..++++|+.|..+||+-+. .-++-|.++++++|++++
T Consensus 77 ~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 77 EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4789999999999999999 899999999999998864
No 10
>PRK06813 homoserine dehydrogenase; Validated
Probab=79.25 E-value=2.4 Score=41.45 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=72.1
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeEe---------eCCchhhHHHHHhcCCCCCccceEEEecc-CCCh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFL---------PADSEHSAVFQCIQGLPEGALWRIILTAS-DWPV 72 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~ 72 (285)
.+|+++||.|--|||.-+-.-|+-|+++|+++|..++ || -+.+-.++.|.+...|+. ||..+ ++=+
T Consensus 109 ~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi---I~~l~~~~~g~~I~~i~G-IlNGT~NyIL 184 (346)
T PRK06813 109 KQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT---LDIGQFSLAGCHIEKIEG-ILNGTTNYIL 184 (346)
T ss_pred HHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch---HHHHhhhcccCcEEEEEE-EEechHHHHH
Confidence 5799999999999999999999999999999998764 54 233434455544333333 23333 5557
Q ss_pred hhh--hcCCHHHHhcCCCCCCC-----cccccchhhhhhhhHHHHHHhhhhCCCCC
Q 040690 73 EKM--KEITVADALKHPIWTLG-----KKITIDSATLFNKGLEVIEAHYLFGAGYD 121 (285)
Q Consensus 73 ~~l--~~vt~~~Al~HP~W~MG-----~KITIDSATm~NKglEvIEA~~LF~~~~~ 121 (285)
.+| ...+.++||+- -..+| +.--||---...|. +|=|...||.+.+
T Consensus 185 ~~m~~~g~~f~eal~~-Aq~lGyaE~DP~~Dl~G~D~A~Kl--~ILA~~~~G~~i~ 237 (346)
T PRK06813 185 TKMNEEDITFEEALKE-AQSKGIAETNPILDVSGSDSACKL--LLLTNSLMGTENK 237 (346)
T ss_pred hhhhhcCCCHHHHHHH-HHHcCCCCCCCccccccHHHHHHH--HHHHHHHcCCCCC
Confidence 777 48889999862 11222 11223322334454 5677778877643
No 11
>PRK06270 homoserine dehydrogenase; Provisional
Probab=76.89 E-value=3 Score=40.17 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=79.5
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCc---hhhHHHHHhcCC-CCCccceE--EEecc-CCChhhh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADS---EHSAVFQCIQGL-PEGALWRI--ILTAS-DWPVEKM 75 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDS---EHsAifQ~L~~~-~~~~v~~i--ilTAS-~~~~~~l 75 (285)
..|+++||.|..+||.-+-.-++-|.+.|+++|..+.- .+ -..-+++.|+.. ..+.|.+| |+.++ ++=+.+|
T Consensus 112 ~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~-ea~v~~glPii~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m 190 (341)
T PRK06270 112 RKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY-EATVGGAMPIINLAKETLAGNDIKSIKGILNGTTNYILTRM 190 (341)
T ss_pred HHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE-eeeeeechhHHHHHHhhcccCceEEEEEEEeCcHHHHHHHH
Confidence 58999999999999999888888899999999987761 11 133455555421 22345554 34444 6667777
Q ss_pred --hcCCHHHHhcCCCCCCC-----cccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEc
Q 040690 76 --KEITVADALKHPIWTLG-----KKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIH 128 (285)
Q Consensus 76 --~~vt~~~Al~HP~W~MG-----~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIH 128 (285)
...+.++||+- -..+| +.--||---...|. +|=|+.+||.+.+-=||-+.
T Consensus 191 ~~~g~~f~~al~~-Aq~~G~aE~DP~~D~~G~D~a~Kl--~Ila~~~~g~~~~~~~v~~~ 247 (341)
T PRK06270 191 EEEGLSYEQALAE-AQELGYAEADPTYDVEGIDAALKV--VILANSILGADLTIKDVEVE 247 (341)
T ss_pred hhcCCCHHHHHHH-HHHcCCCCCCCCCCCccHHHHHHH--HHHHHHHcCCCCCHHHeeec
Confidence 67999999862 12222 12234444456676 78899999987654444444
No 12
>PRK06392 homoserine dehydrogenase; Provisional
Probab=68.30 E-value=5.4 Score=38.58 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=73.2
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeEe---------eCCchhhHHHHHhcCCCCCccceEEEecc-CCCh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFL---------PADSEHSAVFQCIQGLPEGALWRIILTAS-DWPV 72 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~ 72 (285)
..|+++||.|..|||--+...++-++++|+++|+++. ||=+ .+-.+|.|.+...|+. ||..+ ++=+
T Consensus 103 ~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~---~~~~~~~g~~i~~i~G-ilnGT~nyIl 178 (326)
T PRK06392 103 INAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFS---LRDYSTLPSRIKNFRG-IVSSTINYVI 178 (326)
T ss_pred HHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhh---hhhhhcccCCEEEEEE-EEeChHHHHH
Confidence 5799999999999999999889999999999998865 6532 3433455544333333 33333 4445
Q ss_pred hhh-hcCCHHHHhcCCCCCCC-----cccccchhhhhhhhHHHHHHhhhhCCCCC
Q 040690 73 EKM-KEITVADALKHPIWTLG-----KKITIDSATLFNKGLEVIEAHYLFGAGYD 121 (285)
Q Consensus 73 ~~l-~~vt~~~Al~HP~W~MG-----~KITIDSATm~NKglEvIEA~~LF~~~~~ 121 (285)
++| +..+.++||+.- ..+| +.--||---...|. +|=|+.+||.+.+
T Consensus 179 ~~m~~g~~f~~al~eA-q~lG~aE~DP~~Dv~G~D~a~Kl--~ILa~~~~g~~~~ 230 (326)
T PRK06392 179 RQEANGRGFLDVVKIA-QKMGIAETNYSDDLMGLDAARKS--VILANHLFGKDYT 230 (326)
T ss_pred hhccCCCCHHHHHHHH-HHcCCCCCCCccccCCHHHHHHH--HHHHHHHcCCCCC
Confidence 555 588889998732 3333 12233333344565 6778888887653
No 13
>PRK11579 putative oxidoreductase; Provisional
Probab=62.10 E-value=1e+02 Score=29.15 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=79.5
Q ss_pred hHHHHHcCCceeeecccchhcc--cccchHHHhhcCCeEeeC-----CchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETMIAG--GPFILPLAHKHNIKFLPA-----DSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~a--G~li~~~~~~~~~~i~Pv-----DSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+..|+++||-|.. .|-.-... ..-+.++|+++|..+... +..+..+-|.+.....-+|.. ++++ .+...
T Consensus 81 ~~~al~aGkhVl~-EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~--~~~~~~~~~~ 157 (346)
T PRK11579 81 AKAALEAGKHVVV-DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAY--FESHFDRFRP 157 (346)
T ss_pred HHHHHHCCCeEEE-eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEE--EEEEecccCC
Confidence 4689999999874 67654443 355677888888765443 556777777776544334432 2333 11111
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEc---C----CcceeeeEEeecccEE
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIH---P----QSILHSMIETQDSSVI 145 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIH---p----qSivHs~V~f~DGs~~ 145 (285)
. ..++|..-+. -..+.|++-|--.|- ++||||- +.++.+..+ | .-..+.+++|.||.+.
T Consensus 158 -------~---~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G~-~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~~ 224 (346)
T PRK11579 158 -------Q---VRQRWREQGG--PGSGIWYDLAPHLLDQAIQLFGL-PVSITVDLAQLRPGAQSTDYFHAILSYPQRRVV 224 (346)
T ss_pred -------C---CccccccCCC--CCCcchhhhhhhHHHHHHHHhCC-CeEEEEEeeeecCCCCCCceEEEEEEECCeEEE
Confidence 0 1346764221 235678888855554 5899996 456555432 3 2366888899998775
Q ss_pred EecC
Q 040690 146 GQLG 149 (285)
Q Consensus 146 a~~~ 149 (285)
...+
T Consensus 225 ~~~s 228 (346)
T PRK11579 225 LHGT 228 (346)
T ss_pred EEEE
Confidence 5554
No 14
>COG2886 Uncharacterized small protein [Function unknown]
Probab=60.66 E-value=3.2 Score=33.33 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 040690 220 EKAVELFVNGKISYLDIFKVVELTCDKH 247 (285)
Q Consensus 220 EvAVeaFL~gkI~F~dI~~vV~~~Le~~ 247 (285)
|+||++|.+|.++|...+++....++.|
T Consensus 31 ~iaI~L~qeg~vSlg~Aaela~~sl~ef 58 (88)
T COG2886 31 EIAIELFQEGAVSLGRAAELAGMSLNEF 58 (88)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCHHHH
Confidence 7899999999999999999987766655
No 15
>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c.
Probab=55.82 E-value=12 Score=27.17 Aligned_cols=37 Identities=27% Similarity=0.546 Sum_probs=29.9
Q ss_pred ceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCC
Q 040690 11 DIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGL 55 (285)
Q Consensus 11 ~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~ 55 (285)
.+-|-+.+.++-|| ++|.-|+|=|+|-|-+||.+...
T Consensus 13 gl~L~~~~~~~~gg--------~sG~~ivpG~~~~S~L~~~i~~~ 49 (59)
T PF07635_consen 13 GLRLDSRESLLKGG--------DSGPAIVPGDPEESLLWQRITSQ 49 (59)
T ss_pred cceeCCHHHHHhCC--------CCCCeecCCChHHhHHHHHHHcc
Confidence 46677777777777 56778999999999999999743
No 16
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=53.06 E-value=11 Score=37.03 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=54.1
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeE---------eeCCchhhHHHHHhcCCCCCccceEEEecc-CCCh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKF---------LPADSEHSAVFQCIQGLPEGALWRIILTAS-DWPV 72 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i---------~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~ 72 (285)
..|+++||-|--|||--+-.-|+-|++.|+++|+.+ +|| -+.+=+.|.|.+...|+. ||-.+ ++=+
T Consensus 100 ~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPi---I~~lr~~l~g~~I~~i~G-IlNGT~NyIl 175 (333)
T COG0460 100 LKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPI---IKLLRELLAGDEILSIRG-ILNGTTNYIL 175 (333)
T ss_pred HHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcch---HHHHHhhcccCceEEEEE-EEeccHHHHH
Confidence 579999999999999999999999999999999776 465 234445555443333333 34444 4444
Q ss_pred hhhhc--CCHHHHhc
Q 040690 73 EKMKE--ITVADALK 85 (285)
Q Consensus 73 ~~l~~--vt~~~Al~ 85 (285)
.+|.. .+.+|||+
T Consensus 176 t~m~~~~~~f~dal~ 190 (333)
T COG0460 176 TRMEEGGLSFEDALA 190 (333)
T ss_pred HHHHccCCCHHHHHH
Confidence 44433 26677765
No 17
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.87 E-value=15 Score=31.73 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=28.8
Q ss_pred chhcccccchHHHhhcCCeEeeCCchhhHHHHHhc
Q 040690 19 TMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQ 53 (285)
Q Consensus 19 slV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~ 53 (285)
-+|.||....+.|+++|..-++++|.-.+|.+.|.
T Consensus 127 ~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~ 161 (176)
T PF06506_consen 127 DVIVGGGVVCRLARKLGLPGVLIESGEESIRRALE 161 (176)
T ss_dssp -EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHH
T ss_pred cEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHH
Confidence 35678888999999999999999999999999886
No 18
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=44.59 E-value=40 Score=31.47 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeE-eeCCchhhHHHHHhcCCCCCccceEEEeccCCCh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKF-LPADSEHSAVFQCIQGLPEGALWRIILTASDWPV 72 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i-~PvDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~ 72 (285)
..++++||.|...+-.++.- ..-+.+.++++|.++ +| |=...-|++|+......++.+.+|..+-|.
T Consensus 85 ~~aL~aGk~Vi~~s~gal~~-~~~L~~~A~~~g~~l~v~--sGa~~g~d~l~~g~iG~~~~v~~~trkpp~ 152 (271)
T PRK13302 85 EPVLAAGKKAIVLSVGALLR-NEDLIDLARQNGGQIIVP--TGALLGLDAVTAAAEGTIHSVKMITRKPPD 152 (271)
T ss_pred HHHHHcCCcEEEecchhHHh-HHHHHHHHHHcCCEEEEc--chHHHhHHHHHHHHcCCceEEEEEEecCch
Confidence 57899999987654333322 255677889999887 66 777777899986666678999999885543
No 19
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=44.46 E-value=30 Score=32.07 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=52.0
Q ss_pred HHHHHcCCceeeecccchhcc--cccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEeccCCC
Q 040690 3 VAAIEAGKDIALANKETMIAG--GPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWP 71 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~a--G~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS~~~ 71 (285)
..++++||.+...+...+.-. +..+.+.|+++|.+++. +|-.-....+|...+.-.++.+.+|..+.|
T Consensus 79 ~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~d~l~~~~~g~~~~v~~~~~k~p 148 (265)
T PRK13303 79 VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGIDALAAAKEGGLDEVTYTGRKPP 148 (265)
T ss_pred HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCHHHHHHHHhCCceEEEEEEecCh
Confidence 578999999999998876533 67788899999987665 777777777777555556888888865333
No 20
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=44.06 E-value=66 Score=29.58 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=50.1
Q ss_pred hHHHHHcCCceeeecccchhcc-----cccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEeccCCC
Q 040690 2 TVAAIEAGKDIALANKETMIAG-----GPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWP 71 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~a-----G~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS~~~ 71 (285)
...++++||.|.. ||...- ..-+.+.++++|.++..- |-+-+..+.|+......++.+.+|..+-|
T Consensus 54 a~~aL~aGkhVl~---~s~gAlad~e~~~~l~~aA~~~g~~l~i~-sGai~g~d~l~a~~ig~~~~V~i~~~k~p 124 (229)
T TIGR03855 54 AEKILKNGKDLLI---MSVGALADRELRERLREVARSSGRKVYIP-SGAIGGLDALKAASLGRIERVVLTTTKPP 124 (229)
T ss_pred HHHHHHCCCCEEE---ECCcccCCHHHHHHHHHHHHhcCCEEEEC-hHHHHHHHHHHhcccCCceEEEEEEecCh
Confidence 3578999999988 565332 344677889999887643 78888889998776678999999988555
No 21
>PRK08374 homoserine dehydrogenase; Provisional
Probab=37.24 E-value=27 Score=33.71 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=53.1
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeEe---------eCCchhhHHHHHhcCCCCCccceEEEecc-CCCh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFL---------PADSEHSAVFQCIQGLPEGALWRIILTAS-DWPV 72 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~ 72 (285)
..++++||.|-.|||..+-.-++-+.++++++|.+++ || -+.+=.+|.|.+...|+.| |..+ ++=+
T Consensus 109 ~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi---i~~l~~~l~g~~i~~i~GI-lnGT~nyIl 184 (336)
T PRK08374 109 LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI---IGLLRENLLGDTVKRIEAV-VNATTTFIL 184 (336)
T ss_pred HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc---hHHHHhhccccceEEEEEE-EechHHHHH
Confidence 4689999999999999888889999999999998876 32 2344455555443334333 3333 3223
Q ss_pred hhh-hcCCHHHHhc
Q 040690 73 EKM-KEITVADALK 85 (285)
Q Consensus 73 ~~l-~~vt~~~Al~ 85 (285)
++| +..+.++||+
T Consensus 185 ~~m~~g~~f~eal~ 198 (336)
T PRK08374 185 TRMEQGKTFEEALK 198 (336)
T ss_pred HHhhCCCCHHHHHH
Confidence 333 4577888886
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=37.07 E-value=57 Score=24.31 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCCCCCcc-c--ccchhhhhhhhHHHHHHhhhhCCCCCceeEE
Q 040690 87 PIWTLGKK-I--TIDSATLFNKGLEVIEAHYLFGAGYDNIEIV 126 (285)
Q Consensus 87 P~W~MG~K-I--TIDSATm~NKglEvIEA~~LF~~~~~~I~vv 126 (285)
|-|+.+.+ + +||+..-+=---+.||.. .|+|+++...+
T Consensus 1 ~~~~l~g~~~~l~v~~~~TV~~lK~~i~~~--~gip~~~q~L~ 41 (76)
T cd01800 1 PEWKLNGQMLNFTLQLSDPVSVLKVKIHEE--TGMPAGKQKLQ 41 (76)
T ss_pred CCcccCCeEEEEEECCCCcHHHHHHHHHHH--HCCCHHHEEEE
Confidence 78998544 3 456555555566777764 69998775544
No 23
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=36.78 E-value=11 Score=26.69 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=11.1
Q ss_pred ceeeecccchhcc
Q 040690 11 DIALANKETMIAG 23 (285)
Q Consensus 11 ~iaLANKEslV~a 23 (285)
+|-|.|-||+|||
T Consensus 2 tidlgnneslv~g 14 (49)
T PF07151_consen 2 TIDLGNNESLVCG 14 (49)
T ss_pred cccccCCcceEEe
Confidence 4678899999997
No 24
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.51 E-value=30 Score=33.44 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=51.2
Q ss_pred ccceEEEecc--CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCC-cceee
Q 040690 59 ALWRIILTAS--DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQ-SILHS 135 (285)
Q Consensus 59 ~v~~iilTAS--~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpq-SivHs 135 (285)
.++.++|-|= ...++.++..++++- -|= =.|.||+.|.|+ +.||+.++++.+.+|=| |.-|=
T Consensus 185 tld~LyllaIvhr~dikSiRDL~~~h~----~lL---------~n~r~k~~~~i~--~~y~v~~dqlrmf~HYqPSyYHl 249 (310)
T KOG3969|consen 185 TLDSLYLLAIVHRRDIKSIRDLRPSHL----QLL---------RNIRNKSREAIP--QRYGVDPDQLRMFFHYQPSYYHL 249 (310)
T ss_pred cccceeEEEEEecCCcchhhhCCHHHH----HHH---------HHHHHHHHHHHH--HHhCCCchhEEEEEEecCceEEE
Confidence 4667777777 777888888887642 121 257899999999 89999999999999977 66666
Q ss_pred eEEee
Q 040690 136 MIETQ 140 (285)
Q Consensus 136 ~V~f~ 140 (285)
=|.+.
T Consensus 250 HVHi~ 254 (310)
T KOG3969|consen 250 HVHIV 254 (310)
T ss_pred EEEEE
Confidence 66554
No 25
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=33.19 E-value=88 Score=26.57 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=51.4
Q ss_pred ccceEEEecc----CCChhhhhcCCHHHHhcCCCCCCCccccc-chhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcce
Q 040690 59 ALWRIILTAS----DWPVEKMKEITVADALKHPIWTLGKKITI-DSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSIL 133 (285)
Q Consensus 59 ~v~~iilTAS----~~~~~~l~~vt~~~Al~HP~W~MG~KITI-DSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSiv 133 (285)
+-.++++|.+ .++--.+-. ++++++++-. .-|+.|.| -++++..-.++. .|++.+.++|-..
T Consensus 56 ~~~~~V~S~~~~~~~~~~~~~~~-~~~~~v~~lk-~~~~~I~v~GG~~l~~~~l~~----------iDe~~l~v~pv~~- 122 (158)
T cd00209 56 GRTNIVLSRQLDYQDAEGVEVVH-SLEEALELAE-NTVEEIFVIGGAEIYKQALPY----------ADRLYLTRIHAEF- 122 (158)
T ss_pred CCCEEEEccCCCcCCCCCeEEEC-CHHHHHHHHh-cCCCeEEEECcHHHHHHHHhh----------CCEEEEEEECCcc-
Confidence 3558999877 123333445 7899998877 77888977 777887765554 5899999999988
Q ss_pred eeeEEeecc
Q 040690 134 HSMIETQDS 142 (285)
Q Consensus 134 Hs~V~f~DG 142 (285)
.|-.-|.++
T Consensus 123 ~G~~~f~~~ 131 (158)
T cd00209 123 EGDTFFPEI 131 (158)
T ss_pred cCCEECCCC
Confidence 777766653
No 26
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=29.62 E-value=14 Score=34.46 Aligned_cols=11 Identities=64% Similarity=1.047 Sum_probs=9.8
Q ss_pred HHHhhCCCCCC
Q 040690 274 LQLSSGRNPVP 284 (285)
Q Consensus 274 ~~~~~~~~~~~ 284 (285)
++..|||||||
T Consensus 110 viSnSGrNpvp 120 (243)
T COG4821 110 VISNSGRNPVP 120 (243)
T ss_pred EEeCCCCCCcc
Confidence 47899999998
No 27
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=28.57 E-value=58 Score=32.86 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.4
Q ss_pred hHHHHHcCCceeeecccchhcccccchHHHhhcC
Q 040690 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHN 35 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~aG~li~~~~~~~~ 35 (285)
.+.|+.+||-|-+-|=|.=|+=|+++++.+.+.|
T Consensus 119 ~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~G 152 (438)
T COG4091 119 ALEAILHGKHLVMMNVEADVTIGPILKQQADAAG 152 (438)
T ss_pred HHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcC
Confidence 3789999999999999999999999999998776
No 28
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=26.30 E-value=93 Score=24.18 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHcCCCcee--eeehhhHHHHHHHHcC-CCCCccHHHHHHHHHH-hcccCCCCCCCHHHH
Q 040690 192 TAKVPSVNLCYAAGRAGGTMTG--VLSAANEKAVELFVNG-KISYLDIFKVVELTCD-KHRADLVSSPSLEDI 260 (285)
Q Consensus 192 ~~rFP~l~LA~~a~~~g~~~~~--vlNAANEvAVeaFL~g-kI~F~dI~~vV~~~Le-~~~~~~~~~~sLedI 260 (285)
+.++|.|+||.+-. -||.... .=--+ +.-++.|..+ .+.-.+|.+++..+|+ .|+. .....|.++|
T Consensus 10 l~~WtaL~lAVen~-wGG~~s~~K~~~l~-~~i~~~f~~~~~~~~~~le~~L~~~m~~eF~~-~~ED~S~~eV 79 (82)
T PF10273_consen 10 LNRWTALQLAVENG-WGGPDSQEKADWLA-EVIVDWFTENKDPDADDLEDFLEDIMDDEFNT-VVEDGSIEEV 79 (82)
T ss_pred HhcCHHHHHHHHhc-cCCccHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHhHcCc-eecCCCHHHH
Confidence 46899999999885 4554321 11111 3456788886 4567889999999995 6652 1245576665
No 29
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.21 E-value=65 Score=25.69 Aligned_cols=31 Identities=39% Similarity=0.500 Sum_probs=26.0
Q ss_pred CCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEc
Q 040690 91 LGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIH 128 (285)
Q Consensus 91 MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIH 128 (285)
-|.-+||.|. .|+-||..|+.+.-|. +.+||
T Consensus 49 EGDp~tiSS~------~EL~EA~rl~~~n~~~-~l~ih 79 (83)
T cd06404 49 EGDPCTISSQ------MELEEAFRLYELNKDS-ELNIH 79 (83)
T ss_pred CCCceeecCH------HHHHHHHHHHHhcCcc-cEEEE
Confidence 4999999986 6999999999998766 66665
No 30
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=24.94 E-value=51 Score=35.83 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHHcCCceeeecccchh---cccccchHHHhhcCCeEe---------eCCchhhHHHHHh-cCCCCCccceEEEecc-
Q 040690 3 VAAIEAGKDIALANKETMI---AGGPFILPLAHKHNIKFL---------PADSEHSAVFQCI-QGLPEGALWRIILTAS- 68 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV---~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L-~~~~~~~v~~iilTAS- 68 (285)
.+|+++||-|-.|||-.+. .-|+-++++++++|+.+. || -+.+-++| .|.+...|+.| |..+
T Consensus 565 ~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPi---i~~l~~~~~~g~~i~~i~Gi-lnGT~ 640 (819)
T PRK09436 565 ADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPV---IETLQNLLNAGDELLKFEGI-LSGSL 640 (819)
T ss_pred HHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccch---HHHHHHHHhccCcEEEEEEE-EeChH
Confidence 3789999999999999887 367788899999998875 43 34444555 35443344443 4443
Q ss_pred CCChhhh-hcCCHHHHhc
Q 040690 69 DWPVEKM-KEITVADALK 85 (285)
Q Consensus 69 ~~~~~~l-~~vt~~~Al~ 85 (285)
++=+++| +..+.++||+
T Consensus 641 nyIl~~~~~g~~f~~al~ 658 (819)
T PRK09436 641 SFIFGKLDEGMSFSEATR 658 (819)
T ss_pred HHHhhhhhcCCCHHHHHH
Confidence 3323333 5778888886
No 31
>PRK09983 pflD putative formate acetyltransferase 2; Provisional
Probab=23.04 E-value=4.2e+02 Score=28.94 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=47.8
Q ss_pred hHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCC----------------------------CCccHHHHHHHHHHhcc
Q 040690 197 SVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKI----------------------------SYLDIFKVVELTCDKHR 248 (285)
Q Consensus 197 ~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI----------------------------~F~dI~~vV~~~Le~~~ 248 (285)
-|+.|.++.+.|.++|+.+| ||+.+.++++..+ .|.-+++++|-+|+.=.
T Consensus 374 fl~~a~e~i~~G~g~P~~~N--De~ii~~l~~~G~~~edA~dy~~~GCvE~~~~Gk~~~~~~~~~~Nl~k~LElaLn~G~ 451 (765)
T PRK09983 374 FLMKTAETIRLGTGIPQIFN--DEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHENE 451 (765)
T ss_pred HHHHHHHHhcCCCCcceeeC--CHHHHHHHHHcCCCHHHHhhhceeeeeccccCCCccCCCchhhhhHHHHHHHHHhCCC
Confidence 46778888999999999998 6999999976332 24456888899997432
Q ss_pred cCCCCCCCHHHHHHHH
Q 040690 249 ADLVSSPSLEDILHYD 264 (285)
Q Consensus 249 ~~~~~~~sLedIl~iD 264 (285)
.....|.||+++.-
T Consensus 452 --~~~~~sfeel~~a~ 465 (765)
T PRK09983 452 --GNAALTYEGLLEQI 465 (765)
T ss_pred --CCCCCCHHHHHHHH
Confidence 12347999997653
No 32
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=22.84 E-value=61 Score=35.34 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=69.6
Q ss_pred HHHHHcCCceeeecccc---hhcccccchHHHhhcCCeE---------eeCCchhhHHHHHhc-CCCCCccceE--EEec
Q 040690 3 VAAIEAGKDIALANKET---MIAGGPFILPLAHKHNIKF---------LPADSEHSAVFQCIQ-GLPEGALWRI--ILTA 67 (285)
Q Consensus 3 ~~al~~gk~iaLANKEs---lV~aG~li~~~~~~~~~~i---------~PvDSEHsAifQ~L~-~~~~~~v~~i--ilTA 67 (285)
.+|+++||-|-.|||.. ...-|+-|+++++++|..+ +||- +.|=.++. |. +|.+| ||..
T Consensus 559 ~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii---~~l~~l~~~gd---~i~~i~GIlnG 632 (810)
T PRK09466 559 PDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPIN---HTVRDLRNSGD---SILAISGIFSG 632 (810)
T ss_pred HHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChH---HHHHHHHhccC---cEEEEEEEEcc
Confidence 47899999999999974 3467778889999998875 4773 33333332 33 35444 3444
Q ss_pred c-CCChhhh-hcCCHHHHhcCCCCCCC-----cccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEc---CCcc
Q 040690 68 S-DWPVEKM-KEITVADALKHPIWTLG-----KKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIH---PQSI 132 (285)
Q Consensus 68 S-~~~~~~l-~~vt~~~Al~HP~W~MG-----~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIH---pqSi 132 (285)
+ ++=.+.+ +..+.++||+- -..+| +.--||---...|. +|=|+. ||.+.+-=||-+. |++|
T Consensus 633 T~nyi~~~~~~g~~f~eal~~-Aq~~GyaE~DP~~Dl~G~D~a~Kl--~ILa~~-~g~~~~~~dv~~~~l~p~~i 703 (810)
T PRK09466 633 TLSWLFLQFDGSVPFSELVDQ-AWQQGLTEPDPRDDLSGRDVMRKL--VILARE-AGYEIEPDDVRVESLVPAHL 703 (810)
T ss_pred HHHHHHHHHhcCCCHHHHHHH-HHHcCCCCCCCccccccHHHHHHH--HHHHHH-hCCCCChheEEEeecCCccc
Confidence 4 3322222 57888888863 22233 23334444445555 455665 6765433344443 5555
No 33
>PHA02122 hypothetical protein
Probab=22.35 E-value=1e+02 Score=23.12 Aligned_cols=30 Identities=40% Similarity=0.680 Sum_probs=19.3
Q ss_pred hhhhhhhhHHHHHHh-hhhCCCCCceeEEEcCCcceeeeEE
Q 040690 99 SATLFNKGLEVIEAH-YLFGAGYDNIEIVIHPQSILHSMIE 138 (285)
Q Consensus 99 SATm~NKglEvIEA~-~LF~~~~~~I~vvIHpqSivHs~V~ 138 (285)
.+..|||.|| ||. +|||=.-|.| ||||.=+
T Consensus 9 ~gpvm~~vfe--~afi~l~g~~~~~i--------iihs~~~ 39 (65)
T PHA02122 9 PGPVMNRVFE--EAFIGLLGDGCENI--------IIHSFKD 39 (65)
T ss_pred CchHHHHHHH--HHHHHhhCCCCCcE--------EEEeecc
Confidence 4678999987 443 6888554433 4677543
No 34
>TIGR01774 PFL2-3 pyruvate formate-lyase. This model represents isoforms of the pyruvate-formate lyases found in a limited number of species including E. coli. This enzyme catalyzes the reaction pyruvate + CoA - acetyl-CoA + formate, which is a step in the fermentation of glucose.
Probab=21.26 E-value=5e+02 Score=28.43 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=48.6
Q ss_pred hHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCC----------------------------CCccHHHHHHHHHHhcc
Q 040690 197 SVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKI----------------------------SYLDIFKVVELTCDKHR 248 (285)
Q Consensus 197 ~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI----------------------------~F~dI~~vV~~~Le~~~ 248 (285)
-++.|.++.+.|.++|..+| ||+.+.+|++.-+ +|.-++++++-+|+.=.
T Consensus 384 fl~~a~e~i~~G~g~P~~~N--De~ii~~l~~~G~~~edA~dy~~~GCvE~~~~Gk~~~~~~~~~~Nl~k~LE~aLn~G~ 461 (786)
T TIGR01774 384 FLKRLAEAIRSGCGNPALFN--DEAVVPAFKNAGVDDRDALDYTTDGCVEIAPFGNSYTSSDAALINVAKVMEYALNEGV 461 (786)
T ss_pred HHHHHHHHhcCCCCcceeeC--CHHHHHHHHHcCCCHHHHhhhcceeeeccccCCCccCCCchhhhhHHHHHHHHHhCCC
Confidence 36778898999999999999 6999999975331 35566889999997532
Q ss_pred cC---------CCCCCCHHHHHHHHH
Q 040690 249 AD---------LVSSPSLEDILHYDG 265 (285)
Q Consensus 249 ~~---------~~~~~sLedIl~iD~ 265 (285)
.. ..+..|.||+++.-+
T Consensus 462 d~~~g~~~g~~~~~~~sfeel~~a~~ 487 (786)
T TIGR01774 462 DLQFGYEFGAKTEKPKFLEDLLEKLR 487 (786)
T ss_pred CcccCceeCCCCCCCCCHHHHHHHHH
Confidence 10 012468999977643
No 35
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=21.17 E-value=44 Score=25.31 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=17.3
Q ss_pred HhcCCCCCCCcccccchhhhhhh
Q 040690 83 ALKHPIWTLGKKITIDSATLFNK 105 (285)
Q Consensus 83 Al~HP~W~MG~KITIDSATm~NK 105 (285)
--+||-|. |++-.+|++.-+.|
T Consensus 39 s~~HPfyT-G~~~~~~~~GRv~K 60 (68)
T TIGR00105 39 SKCHPFYT-GKQKIVDTGGRVDK 60 (68)
T ss_pred CCCcccCC-CceEEeccCCcHHH
Confidence 34899999 77778998876654
Done!