Query 040690
Match_columns 285
No_of_seqs 120 out of 1030
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q0q_A 1-deoxy-D-xylulose 5-ph 100.0 6E-129 2E-133 933.6 22.8 273 1-278 117-404 (406)
2 2y1e_A 1-deoxy-D-xylulose 5-ph 100.0 3E-128 1E-132 926.2 19.3 269 1-276 121-396 (398)
3 3au8_A 1-deoxy-D-xylulose 5-ph 100.0 3E-127 1E-131 933.2 15.0 273 1-276 189-483 (488)
4 3a06_A 1-deoxy-D-xylulose 5-ph 100.0 3E-117 1E-121 848.6 19.7 267 1-279 101-372 (376)
5 1r0k_A 1-deoxy-D-xylulose 5-ph 100.0 1E-109 3E-114 802.7 21.6 273 1-278 109-386 (388)
6 3do5_A HOM, homoserine dehydro 94.1 0.013 4.6E-07 54.7 1.3 80 2-85 101-192 (327)
7 3ing_A Homoserine dehydrogenas 94.1 0.021 7.3E-07 53.4 2.6 106 2-121 103-231 (325)
8 3upl_A Oxidoreductase; rossman 93.2 0.052 1.8E-06 53.1 3.7 53 2-54 125-178 (446)
9 3mtj_A Homoserine dehydrogenas 92.7 0.035 1.2E-06 54.2 1.5 80 2-85 96-187 (444)
10 3c8m_A Homoserine dehydrogenas 84.8 0.7 2.4E-05 42.8 4.0 112 2-127 107-241 (331)
11 3oqb_A Oxidoreductase; structu 84.8 5.4 0.00018 36.6 10.0 134 2-145 100-259 (383)
12 3i23_A Oxidoreductase, GFO/IDH 83.4 10 0.00034 34.4 11.1 125 2-144 82-221 (349)
13 3o9z_A Lipopolysaccaride biosy 82.8 4.7 0.00016 36.4 8.6 131 2-149 89-228 (312)
14 2glx_A 1,5-anhydro-D-fructose 79.4 14 0.00049 32.7 10.5 128 3-144 80-224 (332)
15 3q2i_A Dehydrogenase; rossmann 71.7 27 0.00091 31.5 10.3 131 2-144 92-237 (354)
16 1ebf_A Homoserine dehydrogenas 68.7 2.1 7.2E-05 40.2 2.2 76 3-85 102-198 (358)
17 2p2s_A Putative oxidoreductase 67.6 31 0.0011 30.8 9.7 128 2-144 83-230 (336)
18 3e9m_A Oxidoreductase, GFO/IDH 66.0 33 0.0011 30.7 9.6 129 2-144 84-224 (330)
19 1xea_A Oxidoreductase, GFO/IDH 65.6 30 0.001 30.7 9.1 123 3-149 81-214 (323)
20 3f4l_A Putative oxidoreductase 65.1 77 0.0026 28.3 12.0 130 2-149 82-226 (345)
21 3m2t_A Probable dehydrogenase; 63.9 35 0.0012 31.0 9.4 126 2-144 85-222 (359)
22 3mz0_A Inositol 2-dehydrogenas 63.4 44 0.0015 29.9 9.9 121 2-144 83-222 (344)
23 3ec7_A Putative dehydrogenase; 62.9 36 0.0012 30.9 9.3 122 2-145 104-243 (357)
24 3kux_A Putative oxidoreductase 62.6 75 0.0026 28.5 11.3 125 2-142 84-223 (352)
25 3u3x_A Oxidoreductase; structu 62.4 66 0.0023 29.2 11.0 131 2-145 105-254 (361)
26 3fhl_A Putative oxidoreductase 56.4 66 0.0023 29.1 9.8 128 2-144 82-228 (362)
27 3e82_A Putative oxidoreductase 55.9 69 0.0024 29.1 9.9 127 2-144 84-226 (364)
28 4hkt_A Inositol 2-dehydrogenas 52.9 82 0.0028 27.9 9.7 126 2-145 80-224 (331)
29 3dty_A Oxidoreductase, GFO/IDH 51.2 1E+02 0.0035 28.2 10.4 138 2-145 102-257 (398)
30 1zh8_A Oxidoreductase; TM0312, 51.0 61 0.0021 29.1 8.6 131 2-144 99-245 (340)
31 3euw_A MYO-inositol dehydrogen 50.4 93 0.0032 27.7 9.7 124 2-145 82-225 (344)
32 3ip3_A Oxidoreductase, putativ 49.6 61 0.0021 28.9 8.4 127 2-144 84-230 (337)
33 3evn_A Oxidoreductase, GFO/IDH 46.9 1.5E+02 0.0052 26.1 10.9 129 2-144 84-224 (329)
34 3cea_A MYO-inositol 2-dehydrog 46.6 80 0.0027 27.9 8.6 129 2-145 88-238 (346)
35 3v5n_A Oxidoreductase; structu 43.9 1.2E+02 0.0042 28.1 9.7 139 2-144 127-284 (417)
36 2q5c_A NTRC family transcripti 42.3 14 0.00049 31.4 2.7 35 19-53 144-178 (196)
37 3e18_A Oxidoreductase; dehydro 36.5 2E+02 0.0068 25.9 9.7 128 2-144 82-223 (359)
38 3gdo_A Uncharacterized oxidore 36.5 2.4E+02 0.0081 25.3 10.8 124 2-141 82-221 (358)
39 3btv_A Galactose/lactose metab 31.8 2.8E+02 0.0095 25.8 10.1 136 2-147 106-279 (438)
40 2ho3_A Oxidoreductase, GFO/IDH 31.7 2.6E+02 0.0089 24.4 10.2 134 2-149 79-227 (325)
41 3c1a_A Putative oxidoreductase 30.8 1.7E+02 0.0059 25.6 8.1 118 3-144 87-219 (315)
42 1xr4_A Putative citrate lyase 29.0 26 0.0009 34.5 2.5 32 111-147 472-503 (509)
43 2nvw_A Galactose/lactose metab 28.6 3E+02 0.01 26.2 9.9 131 2-142 125-294 (479)
44 2ejw_A HDH, homoserine dehydro 28.5 24 0.00084 32.6 2.1 84 3-93 85-189 (332)
45 1d8j_A General transcription f 28.2 14 0.00047 28.2 0.3 34 230-263 7-40 (81)
46 2pju_A Propionate catabolism o 27.7 34 0.0012 30.0 2.8 34 19-53 156-189 (225)
47 1h6d_A Precursor form of gluco 27.3 1.5E+02 0.0051 27.7 7.4 131 2-145 167-317 (433)
48 1ydw_A AX110P-like protein; st 22.6 2.9E+02 0.0099 24.6 8.1 130 2-144 88-236 (362)
49 3oa2_A WBPB; oxidoreductase, s 21.6 56 0.0019 29.3 3.1 133 2-149 90-231 (318)
No 1
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=100.00 E-value=6e-129 Score=933.57 Aligned_cols=273 Identities=41% Similarity=0.656 Sum_probs=263.5
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHh----cCC------CCCccceEEEecc--
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI----QGL------PEGALWRIILTAS-- 68 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L----~~~------~~~~v~~iilTAS-- 68 (285)
||++|+++||+|||||||||||||+++++.++++|++|+||||||||||||| .|+ +..+|+|||||||
T Consensus 117 PTlaAi~aGK~iaLANKEsLV~aG~lv~~~a~~~~~~ilPVDSEHsAIfQ~L~~~~~g~~~~~~~~~~~V~kiiLTASGG 196 (406)
T 1q0q_A 117 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGG 196 (406)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHHTHHHHHHHHHHTCEEEECSHHHHHHHHTSCHHHHTTTTTSCTGGGTEEEEEEEECCC
T ss_pred HHHHHHHCCCeEEEechHHHHhchHHHHHHHHHcCCeEEEecchHHHHHHHcccccCCccccccCCcccccEEEEECCCc
Confidence 7999999999999999999999999999999999999999999999999999 876 4456999999999
Q ss_pred ---CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEE
Q 040690 69 ---DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVI 145 (285)
Q Consensus 69 ---~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~ 145 (285)
++|+++|++|||+|||+||||+||+||||||||||||||||||||||||+|+|+|||||||||||||||+|.|||++
T Consensus 197 PFR~~~~e~L~~vT~eqAl~HPnWsMG~KITIDSATmmNKGLEvIEA~~LF~~~~d~I~VvVHPQSiIHSmVef~DGSv~ 276 (406)
T 1q0q_A 197 PFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVL 276 (406)
T ss_dssp TTTTSCGGGGGGCCHHHHHCCSSCCCCHHHHHHHHHTHHHHHHHHHHHHHHTCCGGGEEEEECTTCCEEEEEEETTSCEE
T ss_pred ccCCCCHHHHhCCCHHHHhcCCCccCCCeeeehHHhHHhhhHHHHHHHHHcCCCHHHeEEEECCCCceeEEEEEcCCcEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHH
Q 040690 146 GQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL 225 (285)
Q Consensus 146 a~~~~pDMr~PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVea 225 (285)
||||.||||+||+|||+||+|.+ ...++|||.++++|||++||++|||||+|||+|++.||++|+|||||||+||++
T Consensus 277 AQlg~PDMrlPIayAL~~P~R~~---~~~~~lDl~~~~~LtF~~pD~~rFP~L~LA~~a~~~Gg~~p~vlNAANEvAV~a 353 (406)
T 1q0q_A 277 AQLGEPDMRTPIAHTMAWPNRVN---SGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA 353 (406)
T ss_dssp EEECCSCTHHHHHHHHHTTSCCC---CSCCCCCTTTCCCBCCBCCCTTTCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHcCCccCCC---CCCCCCCCCcCCCcEEeCCChhhCcHHHHHHHHHhcCCCceEeeEHHHHHHHHH
Confidence 99999999999999999999994 578999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCccHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040690 226 FVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSS 278 (285)
Q Consensus 226 FL~gkI~F~dI~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~ 278 (285)
||+|||+|+||+++|+++|+++. ...+.|+|||+++|+|||++|++++..+
T Consensus 354 FL~~~I~F~dI~~ii~~~l~~~~--~~~~~sle~il~~D~~aR~~a~~~~~~~ 404 (406)
T 1q0q_A 354 FLAQQIRFTDIAALNLSVLEKMD--MREPQCVDDVLSVDANAREVARKEVMRL 404 (406)
T ss_dssp HHTTSSCTTHHHHHHHHHHHHCC--CCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCcchHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 4456799999999999999999988665
No 2
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A
Probab=100.00 E-value=2.8e-128 Score=926.25 Aligned_cols=269 Identities=39% Similarity=0.666 Sum_probs=252.8
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++|+++||+|||||||||||||+|+++.++++| |+|||||||||||||.|++..+|+||||||| ++|+++|
T Consensus 121 PTlaAi~aGK~iaLANKEsLV~aG~lv~~~a~~~~--ilPVDSEHsAIfQ~L~g~~~~~V~kiiLTASGGPFR~~~~e~L 198 (398)
T 2y1e_A 121 PTLAALKTGARLALANKESLVAGGSLVLRAARPGQ--IVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADL 198 (398)
T ss_dssp HHHHHHHHTCEEEECCHHHHHHHTHHHHHHCCTTC--EEECSHHHHHHHHHGGGSCGGGEEEEEEEECCCTTTTCCHHHH
T ss_pred HHHHHHHCCCceEEcccchheecHHHHHHHHHHcC--ceEecchHhHHHHHhCCCCcccccEEEEECCccccCCCCHHHH
Confidence 79999999999999999999999999999999988 9999999999999999977667999999999 8999999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
++|||+|||+||||+||+||||||||||||||||||||||||+|+|||||||||||||||||+|.|||++||||.||||+
T Consensus 199 ~~vT~eqAl~HPnWsMG~KITIDSATmmNKGLEvIEA~~LF~~~~d~I~VvVHPQSiIHSmVef~DGSv~Aqlg~PDMrl 278 (398)
T 2y1e_A 199 EHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKL 278 (398)
T ss_dssp TTCCTTTC-------CCHHHHHHHHHSHHHHHHHHHHHHHHCCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCSCTHH
T ss_pred hCCCHHHHhhCCCcccCceeeehhHhHhhhhHHHHHHHHHcCCCHHHeEEEECCCCceeEEEEEeCCcEEEEeCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|.+ ...++|||.++++|+|++||++|||||+|||+|++.||++|+|||||||+||++||+|||+|+|
T Consensus 279 PIayAL~~P~R~~---~~~~~lDl~~~~~LtFe~pD~~rFP~L~LA~~a~~~Gg~~p~vlNAANEvAV~aFL~~~I~F~d 355 (398)
T 2y1e_A 279 PISLALGWPRRVS---GAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPA 355 (398)
T ss_dssp HHHHHHHTTSCCT---TSSCCCCTTSCEEEEEEECCTTTCTHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHTTSSCTHH
T ss_pred HHHHHcCCccCCC---CCCCCCCcCCCCCcEEeCCChhhCchHHHHHHHHhcCCCceEEeEHHHHHHHHHHHhCCCCcch
Confidence 9999999999994 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Q 040690 236 IFKVVELTCDKHRADLVSS--PSLEDILHYDGWAREYTASLQL 276 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~~~--~sLedIl~iD~~aR~~a~~~~~ 276 (285)
|+++|+++|+++. ...+ .|||||+++|+|||++|++++.
T Consensus 356 I~~ii~~~l~~~~--~~~~~~~sle~il~~D~~aR~~a~~~~~ 396 (398)
T 2y1e_A 356 IVGIIADVLHAAD--QWAVEPATVDDVLDAQRWARERAQRAVS 396 (398)
T ss_dssp HHHHHHHHHHTCG--GGGSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--ccCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999986 2344 5999999999999999999874
No 3
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*
Probab=100.00 E-value=3.2e-127 Score=933.22 Aligned_cols=273 Identities=42% Similarity=0.747 Sum_probs=250.7
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhc-CCeEeeCCchhhHHHHHhcCC-------------CCCccceEEEe
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKH-NIKFLPADSEHSAVFQCIQGL-------------PEGALWRIILT 66 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~-~~~i~PvDSEHsAifQ~L~~~-------------~~~~v~~iilT 66 (285)
||++|+++||+|||||||||||||+++++.++++ |++|+|||||||||||||.|+ +..+|+||+||
T Consensus 189 PTlaAi~aGK~IALANKESLV~aG~Lv~~~a~~~~g~~IlPVDSEHsAIFQcL~g~~~~~~~~~~~~~~~~~~V~kIiLT 268 (488)
T 3au8_A 189 STMYAIMNNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVLKTKCLQDNFSKINNINKIFLC 268 (488)
T ss_dssp HHHHHHHTTCEEEECCSHHHHHHHHHHHHHHHHSTTCEEEECSHHHHHHHHHSCHHHHTTSCTTCTTHHHHTTEEEEEEE
T ss_pred HHHHHHHCCCcEEEecchhhhhchHHHHHHHHhcCCCeEEEechhHHHHHHHhcCCcccccccccccccccccccEEEEE
Confidence 7999999999999999999999999999999999 999999999999999999976 43469999999
Q ss_pred cc-----CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeec
Q 040690 67 AS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQD 141 (285)
Q Consensus 67 AS-----~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~D 141 (285)
|| ++|+++|++|||+|||+||||+||+||||||||||||||||||||||||+|+|+|||||||||||||||||.|
T Consensus 269 ASGGPFR~~~~eeL~~VTpeqALkHPnWsMG~KITIDSATMmNKGLEvIEA~~LF~v~~d~IeVvVHPQSIIHSmVef~D 348 (488)
T 3au8_A 269 SSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHFLFDVDYNDIEVIVHKECIIHSCVEFID 348 (488)
T ss_dssp ECCCTTTTCCHHHHTTCCTTTC---------CHHHHHHHSSHHHHHHHHHHHHHHTCCGGGEEEEECTTCCEEEEEEETT
T ss_pred CCCcccCCCCHHHHhCCCHHHHhcCCCccCCceeeeehHhHhhhhHHHhHHHHHcCCCHHHeEEEECCCCceeEEEEEeC
Confidence 99 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCcchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHH
Q 040690 142 SSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEK 221 (285)
Q Consensus 142 Gs~~a~~~~pDMr~PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEv 221 (285)
||++||||.||||+||+|||+||+|.+ ..+++|||.++++|||++||++|||||+|||+|++.||++|+|||||||+
T Consensus 349 GSviAQlg~PDMRlPIayAL~yP~R~~---~~~~~LDl~~~~~LtFe~pD~~rFP~L~LA~eA~~~Gg~~paVlNAANEv 425 (488)
T 3au8_A 349 KSVISQMYYPDMQIPILYSLTWPDRIK---TNLKPLDLAQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEI 425 (488)
T ss_dssp SCEEEEECSSCSHHHHHHHHHTTCCCC---CCCCCCCHHHHCEEECBCCCTTTCHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcHHHHHHHccCccCCC---CCCCCCCCCcCCCceeeCCChHhCchHHHHHHHHhcCCCceeeeEHHHHH
Confidence 999999999999999999999999994 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcccC-C-CCCC-CHHHHHHHHHHHHHHHHHHHH
Q 040690 222 AVELFVNGKISYLDIFKVVELTCDKHRAD-L-VSSP-SLEDILHYDGWAREYTASLQL 276 (285)
Q Consensus 222 AVeaFL~gkI~F~dI~~vV~~~Le~~~~~-~-~~~~-sLedIl~iD~~aR~~a~~~~~ 276 (285)
||++||+|+|+|+||+++|+++|+++... . ..+. |+|||+++|+|||+.|++++.
T Consensus 426 AV~aFL~gkI~F~dI~~iIe~vl~~~~~~~~~~~p~~sle~Il~~D~~AR~~a~~~i~ 483 (488)
T 3au8_A 426 ANNLFLNNKIKYFDISSIISQVLESFNSQKVSENSEDLMKQILQIHSWAKDKATDIYN 483 (488)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHhchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997510 0 2234 599999999999999999873
No 4
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=100.00 E-value=3.2e-117 Score=848.58 Aligned_cols=267 Identities=33% Similarity=0.556 Sum_probs=256.6
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++|+++||+|+||||||||+||+++++.++++|++|+|||||||||||||+ .+|++|+|||| +|++++|
T Consensus 101 ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~llPVDSEHsAifQ~L~----~~v~kiiLTASGGpFr~~~~~~l 176 (376)
T 3a06_A 101 AVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME----PEVEKVVLTASGGALRDWKISKI 176 (376)
T ss_dssp HHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHCC----SSCSEEEEEECCCTTSSSCHHHH
T ss_pred HHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEEEEccccCHHHHHHH----hhhceEEEeccCCcccCCCHHHH
Confidence 78999999999999999999999999999999999999999999999999998 34999999999 8999999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
++|||+|||+||||+||+|||||||||||||||+||||||||+|+++|+|||||||||||||+|.|||++||||.||||+
T Consensus 177 ~~vt~~~Al~HPnW~MG~KITiDSATmmNKGlEvIEA~wLF~~~~~~I~vvvHpqSiIHsmVef~DGsv~Aqlg~pDMr~ 256 (376)
T 3a06_A 177 DRARPEDVLKHPVWNMGARITVDSATMVNKAFEVLEAMELFELPFEKIEVKIHREGLVHGAVVLPDGNVKMVVSPPDMRI 256 (376)
T ss_dssp TTCCGGGTCCCSSCCCCHHHHHHHHHTHHHHHHHHHHHHHHTCCGGGEEEEECTTCCEEEEEECTTSCEEEEECCSCTHH
T ss_pred hhCCHHHhccCCCCCCCCeEEecHHHHHHHHHHHHHHHHHcCCChheEEEEECCCCeEEEEEEEcCCcEEEEcCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|. +..+|||.+ ++|+|++||++|||||+|||+| +.||++|+|||||||+||++||+|||+|+|
T Consensus 257 PIayaL~~P~R~-----~~~~lD~~~-~~ltF~~pD~~rfp~l~La~~a-~~gg~~~~vlNAANE~AV~aFL~~~I~F~~ 329 (376)
T 3a06_A 257 PISYALFYPRRV-----ALEPFFLRT-ISLSFEDPDPEKYPAFFLLKEI-KDSYALRTAFNAADEVAVEAFLKGRIRFGG 329 (376)
T ss_dssp HHHHHHHTTSCC-----CSCCCCCCC-EEECCBCCCTTTCTTGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHTTSSCTTH
T ss_pred HHHHHhCCcccc-----CCccCCccc-ccCccCCCCcCCCchHHHHHHH-ccCCCceEEeEHHHHHHHHHHHcCCCCcch
Confidence 999999999998 468999999 9999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040690 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSG 279 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~~ 279 (285)
|+++|+++|+++.. ...+.|||||+++|+|||++|++++..+.
T Consensus 330 I~~~i~~~l~~~~~-~~~~~~l~~i~~~d~~aR~~a~~~~~~~~ 372 (376)
T 3a06_A 330 IHRVIEKTLEEFQG-YPQPRTLDDVERIHFEAIKKAERVTEWLS 372 (376)
T ss_dssp HHHHHHHHHHTTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999852 13456999999999999999999887654
No 5
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=100.00 E-value=9.5e-110 Score=802.68 Aligned_cols=273 Identities=42% Similarity=0.680 Sum_probs=257.2
Q ss_pred ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690 1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM 75 (285)
Q Consensus 1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l 75 (285)
||++|+++||+|+|||||++|++|+++++.|+++|++++||||||+||||||.|.+..+|.+|+|||| +|+++++
T Consensus 109 ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~liPVDseh~Ai~q~L~g~~i~~v~~IilTaSGGpfr~~~~~~l 188 (388)
T 1r0k_A 109 ATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEM 188 (388)
T ss_dssp HHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEEECSHHHHHHHHHCCTTCGGGEEEEEEEECCCTTTTCCHHHH
T ss_pred HHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEEEechhHHHHHHHhhCCCccceeEEEEEeecccccCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999877667999999999 7899999
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI 155 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~ 155 (285)
.++||+||++||||+||+|||||||||||||||+||||||||+|+++|+|||||||+|||||+|.|||++||||.||||+
T Consensus 189 ~~vt~~~Al~hp~W~mG~KitiDSAtm~NkglevIEa~~Lf~~~~~~I~vvvhpqsiihsmV~f~dGsv~aql~~pdMr~ 268 (388)
T 1r0k_A 189 ATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRT 268 (388)
T ss_dssp TTCCHHHHHC------CHHHHHHHHHTHHHHHHHHHHHHHHCCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCSCTHH
T ss_pred hcCCHHHhccCCCCCCcchhhhHHHHHHcCcCccccccccCCCCHHHeeeeechhHeeEEEEEEcCCcEEEecCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690 156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235 (285)
Q Consensus 156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d 235 (285)
||+|||+||+|.+ ....+|||.++++|+|++||++|||||+|||+|++.||++|+|||||||+||++||+|||+|+|
T Consensus 269 pi~~al~~p~r~~---~~~~~ld~~~~~~l~F~~pd~~~fp~l~la~~a~~~gg~~~~v~naanE~av~~Fl~~~i~f~~ 345 (388)
T 1r0k_A 269 PIGHTLAWPKRME---TPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLD 345 (388)
T ss_dssp HHHHHHHTTSCCC---CCCCCCCHHHHCEEECBCCCTTTCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHTTSSCTTH
T ss_pred HHHHHcCCccccc---ccccccCccccccccccCCCcccCcHHHHHHHHHhcCCCceEeeeHHHHHHHHHHHcCCCCcch
Confidence 9999999999994 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040690 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSS 278 (285)
Q Consensus 236 I~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~ 278 (285)
|+++|+++|+++. ...+.|||||+++|+|||++|++++..+
T Consensus 346 i~~~i~~~~~~~~--~~~~~~~~~i~~~d~~ar~~~~~~~~~~ 386 (388)
T 1r0k_A 346 IAKIVEKTLDHYT--PATPSSLEDVFAIDNEARIQAAALMESL 386 (388)
T ss_dssp HHHHHHHHHHHCC--CCCCSSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999986 4456799999999999999999987543
No 6
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=94.13 E-value=0.013 Score=54.71 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=61.0
Q ss_pred hHHHHHcCCceeeecccchhcccccchHHHhhcCCeEe---------eCCchhhHHHHHhcCCCCCccceEEEecc-CCC
Q 040690 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFL---------PADSEHSAVFQCIQGLPEGALWRIILTAS-DWP 71 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~ 71 (285)
+..|+++||.|..+||+.+..-|+-+.+.|+++|..++ |+ .+.+-++|.+.+...|+.|+ ..+ ++-
T Consensus 101 ~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~Pi---i~~l~~~l~~~~I~~I~GIl-nGT~nyi 176 (327)
T 3do5_A 101 IREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPV---VKLAKRYLALCEIESVKGIF-NGTCNYI 176 (327)
T ss_dssp HHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSCC---HHHHHTTTTTSCEEEEEEEC-CHHHHHH
T ss_pred HHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCHH---HHHHHHHhhCCCccEEEEEE-CCCcCcc
Confidence 46899999999999999999889999999999998765 44 45677777664433444433 333 777
Q ss_pred hhhh--hcCCHHHHhc
Q 040690 72 VEKM--KEITVADALK 85 (285)
Q Consensus 72 ~~~l--~~vt~~~Al~ 85 (285)
+.+| +..+.++||+
T Consensus 177 lt~m~~~g~~f~~~l~ 192 (327)
T 3do5_A 177 LSRMEEERLPYEHILK 192 (327)
T ss_dssp HHHHHHHCCCHHHHHH
T ss_pred hhhcCcCCcCHHHHHH
Confidence 7788 4899999886
No 7
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=94.11 E-value=0.021 Score=53.35 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=73.0
Q ss_pred hHHHHHcCCceeeecccchhcccccchHHHhhcCCeEe---------eCCchhhHHHHHhcCCCCCccceE--EEecc-C
Q 040690 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFL---------PADSEHSAVFQCIQGLPEGALWRI--ILTAS-D 69 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L~~~~~~~v~~i--ilTAS-~ 69 (285)
+.+|+++||.|..+||+.+..-|+-|.++|+++|..++ ||- +.+.++|.|.+ |.+| |+..+ +
T Consensus 103 ~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii---~~l~~~l~g~~---I~~i~Gi~nGT~n 176 (325)
T 3ing_A 103 YRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLF---SVLDYSILPSK---VKRFRGIVSSTIN 176 (325)
T ss_dssp HHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCH---HHHHHTCTTCC---EEEEEEECCHHHH
T ss_pred HHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHH---HHHHHHhhCCC---eeEEEEEEEeeee
Confidence 45899999999999999998889999999999998875 886 89999997644 5555 34444 4
Q ss_pred CChhhhh-cCCHHHHhc----------CCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCC
Q 040690 70 WPVEKMK-EITVADALK----------HPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYD 121 (285)
Q Consensus 70 ~~~~~l~-~vt~~~Al~----------HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~ 121 (285)
+=+.+|. ..+.++||+ .|+ --||---.+.|. +|=|+.+||.+.+
T Consensus 177 yil~~m~~g~~f~~~l~~Aq~~GyaE~DP~------~Dv~G~D~a~Kl--~ILa~~~~g~~~~ 231 (325)
T 3ing_A 177 YVIRNMANGRSLRDVVDDAIKKGIAESNPQ------DDLNGLDAARKS--VILVNHIFGTEYT 231 (325)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTCSCSSTH------HHHTTHHHHHHH--HHHHHHHHCCCCC
T ss_pred EEeecccCCCCHHHHHHHHHHcCCCCCCcc------cccCChhHHHHH--HHHHHHHcCCCCC
Confidence 4444443 677788876 453 222222233443 3556777776543
No 8
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=93.21 E-value=0.052 Score=53.13 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=48.5
Q ss_pred hHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCch-hhHHHHHhcC
Q 040690 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSE-HSAVFQCIQG 54 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSE-HsAifQ~L~~ 54 (285)
+..|+++||-|..+|||..+.-|+.|.+.|+++|..+.++|++ ++++.+++.-
T Consensus 125 a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~eLv~~ 178 (446)
T 3upl_A 125 GIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIEF 178 (446)
T ss_dssp HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcchHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998 6778888873
No 9
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=92.66 E-value=0.035 Score=54.23 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=59.8
Q ss_pred hHHHHHcCCceeeecccchhcccccchHHHhhcCCeE---------eeCCchhhHHHHHhcCCCCCccceEEEecc-CCC
Q 040690 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKF---------LPADSEHSAVFQCIQGLPEGALWRIILTAS-DWP 71 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i---------~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~ 71 (285)
+.+|+++||.|..+||..+..-|.-|.+.|+++|..+ +|+ ...+-++|.+.+...|..|+ ..+ ++-
T Consensus 96 ~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPi---i~~LrelL~~~~Ig~I~GIl-nGT~nyi 171 (444)
T 3mtj_A 96 VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPI---IKALREGLTANRIEWLAGII-NGTSNFI 171 (444)
T ss_dssp HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCH---HHHHHTTTTTSCEEEEEEEC-CHHHHHH
T ss_pred HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHH---HHHHHHHHhCCCCceEEEEE-cCCcccc
Confidence 4689999999999999877888899999999999888 464 77788888765433444433 222 555
Q ss_pred hhhhh--cCCHHHHhc
Q 040690 72 VEKMK--EITVADALK 85 (285)
Q Consensus 72 ~~~l~--~vt~~~Al~ 85 (285)
+.+|. ..+.++||+
T Consensus 172 lt~m~~~g~~f~~~l~ 187 (444)
T 3mtj_A 172 LSEMRDKGAAFDDVLK 187 (444)
T ss_dssp HHHHHHHCCCHHHHHH
T ss_pred cccCCCCCCCHHHHHH
Confidence 66663 688888886
No 10
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=84.82 E-value=0.7 Score=42.79 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=71.0
Q ss_pred hHHHHHcCCceeeecccchhcccccchHHHhhcCCeEe---------eCCchhhHHHHHhcCCCCCccceE--EEecc-C
Q 040690 2 TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFL---------PADSEHSAVFQCIQGLPEGALWRI--ILTAS-D 69 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L~~~~~~~v~~i--ilTAS-~ 69 (285)
..+|+++||-|..+||.-+..-|+-+.+.|+++|..++ |+ ...+-++|.+. .|.+| |+.++ +
T Consensus 107 ~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPi---i~~l~~~l~g~---~I~~I~GI~nGT~n 180 (331)
T 3c8m_A 107 YKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPL---FSFIDYSVLPS---RIKKFRGIVSLTIN 180 (331)
T ss_dssp HHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCC---HHHHHHHSTTC---CCCEEEEECCHHHH
T ss_pred HHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccccHH---HHHHHHHhhcC---cccEEEEEEeccce
Confidence 35799999999999999988888899999999998764 43 67777888654 46665 55555 3
Q ss_pred CChhhh-hcCCHHHHhc----------CCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEE
Q 040690 70 WPVEKM-KEITVADALK----------HPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVI 127 (285)
Q Consensus 70 ~~~~~l-~~vt~~~Al~----------HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvI 127 (285)
+=+.+| ...+++++|+ .|+-.++. .|. +-|. .|=|+..||.+.+-=||-+
T Consensus 181 yil~~m~~g~~f~~~l~eAq~~GyaE~dP~~Dv~G---~D~---a~Kl--~iLa~~a~g~~~~~~~v~~ 241 (331)
T 3c8m_A 181 YFIRELANKREFDDVLSEATKLGIVEKNYKDDLTG---LDA---ARKS--VILCNHLYGSSYRLSDVFY 241 (331)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTSSCSSCHHHHTT---HHH---HHHH--HHHHHHHHCCCCCGGGSEE
T ss_pred eEecchhcCCCHHHHHHHHHHcCCCCCCcccCCCC---ccH---HHHH--HHHHHHHhCCCCChhheEE
Confidence 222222 3456666665 44433322 122 3333 2456667888654334333
No 11
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=84.79 E-value=5.4 Score=36.55 Aligned_cols=134 Identities=12% Similarity=0.105 Sum_probs=82.3
Q ss_pred hHHHHHcCCceeeecccc--hhcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCC-hh
Q 040690 2 TVAAIEAGKDIALANKET--MIAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWP-VE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEs--lV~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~-~~ 73 (285)
+.+|+++||.|. ..|=. -+.-+.-+.+.++++|..+.. -+....++-+++......+|..+-.+-+.+. ..
T Consensus 100 ~~~al~~Gk~V~-~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~~~~~~~ 178 (383)
T 3oqb_A 100 LTQAINAGKHVY-CEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLRDSGFFGRILSVRGEFGYWVFEG 178 (383)
T ss_dssp HHHHHTTTCEEE-ECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHTTTTSSEEEEEEEEECCCCCS
T ss_pred HHHHHHCCCeEE-EcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHHHHcCCCCCcEEEEEEeccccccc
Confidence 468999999976 77833 333466677889998875432 2344555666666544445655544432111 00
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-----------------Ccceee
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-----------------QSILHS 135 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-----------------qSivHs 135 (285)
... + -..|.|..-+. -..+.|++-|.-.|. +.|||| +++++.+.... .-..+.
T Consensus 179 ~~~---~---~~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~~~~~~~g~~~~~~~~D~~~~ 249 (383)
T 3oqb_A 179 GWQ---E---AQRPSWNYRDE--DGGGIILDMVCHWRYVLDNLFG-NVQSVVCIGNTDIPERFDEQGKKYKATADDSAYA 249 (383)
T ss_dssp SSS---C---CSSCGGGGCTT--TTCCHHHHHHHHHHHHHHHHTC-CEEEEEEEEECSCSEEECTTSCEEECCSCCEEEE
T ss_pred ccc---c---cCCCCcccccc--cCCceeeehhhHHHHHHHHHcC-CCeEEEEEEeecccccccCCCceeccccCCcEEE
Confidence 000 0 13567864332 335778888876666 679999 77788776632 246788
Q ss_pred eEEeecccEE
Q 040690 136 MIETQDSSVI 145 (285)
Q Consensus 136 ~V~f~DGs~~ 145 (285)
+++|.||.+.
T Consensus 250 ~l~~~~G~~~ 259 (383)
T 3oqb_A 250 TFQLEGGVIA 259 (383)
T ss_dssp EEEETTTEEE
T ss_pred EEEeCCCCEE
Confidence 9999999654
No 12
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=83.40 E-value=10 Score=34.44 Aligned_cols=125 Identities=16% Similarity=0.232 Sum_probs=80.0
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCChhh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~ 74 (285)
+.+|+++||.|.+ .|=.- +.-..-+.+.++++|..+.. -+..+..+-+++......+|..+-.+-+ +..
T Consensus 82 ~~~al~aGk~Vl~-EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~-~~~-- 157 (349)
T 3i23_A 82 AKQAILAGKSVIV-EKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQGFLGEINEVETHID-YYR-- 157 (349)
T ss_dssp HHHHHHTTCEEEE-CSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTCSEEEEEEECC-CBC--
T ss_pred HHHHHHcCCEEEE-ECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCCEEEEEEEec-ccC--
Confidence 4679999998875 45433 22344567888898876642 2444556666665444344554433322 211
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeecccE
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQDSSV 144 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~DGs~ 144 (285)
|. +.|..-. -..+.|++-|.-.|. +.|||| +++++.+.... .-..+.+++|.||.+
T Consensus 158 -----~~-----~~w~~~~---~ggG~l~d~g~H~id~~~~l~G-~p~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~~ 221 (349)
T 3i23_A 158 -----PG-----SITEQGP---KENGSFYGLGIHLMDRMIALFG-RPDQVTYDIRNNEVSEAVDNYFDVDLHYGSKLK 221 (349)
T ss_dssp -----TT-----SCCSCCC---GGGSHHHHTHHHHHHHHHHHHC-CCSEEEECEECSSSTTSCCCEEEEEEEETTTEE
T ss_pred -----Cc-----hhhcccC---CCCCeehhhhhHHHHHHHHHhC-CCeEEEEEEEeeCCCCCcceEEEEEEEeCCCcE
Confidence 11 6787654 467889999887777 579999 88888876532 346788999999854
No 13
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=82.78 E-value=4.7 Score=36.39 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=85.7
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||.|.+ -|=.- +.-..-+.++++++|..+.. -+.....+-+.+... .+|..+-.+-. .++..
T Consensus 89 ~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g--G~i~~v~~~~~~~~~~~ 165 (312)
T 3o9z_A 89 IRMALRLGANALS-EKPLVLWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERLGQE--KGAKDVVLTYVTGRGKW 165 (312)
T ss_dssp HHHHHHTTCEEEE-CSSSCSCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHTC--CSCEEEEEEEEECCCTT
T ss_pred HHHHHHCCCeEEE-ECCCCCCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHHHcC--CCEEEEEEEEEccCCCc
Confidence 4679999998864 23211 12344567788888876532 345555666666644 34555544432 11110
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHH-hhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecC
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEA-HYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLG 149 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA-~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~ 149 (285)
...+|..-+.. ..+.|+|-|.-.|.. .|||| ++.++.+-+..+..++++++|.+|.+..++|
T Consensus 166 -----------~~~~w~~~~~~--~gG~l~d~g~H~id~~~~l~G-~~~~v~~~~~~~d~~~~~l~~~~g~v~~~~s 228 (312)
T 3o9z_A 166 -----------YGKSWKVDEAK--SGGLATNIGIHFFDLLAWLFG-RALHVEVHARTPTVNAGYLELEGARVRWFLS 228 (312)
T ss_dssp -----------GGGSGGGCHHH--HCCHHHHTTHHHHHHHHHHHC-CEEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred -----------cccccccCccc--CCCeeeecccCHHHHHHHHhC-CCeEEEEEecCCceEEEEEEECCCcEEEEEE
Confidence 12467654332 357899998887775 89999 5678888889999999999999999876665
No 14
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=79.37 E-value=14 Score=32.74 Aligned_cols=128 Identities=13% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHHHHcCCceeeecccchh--cccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChhh
Q 040690 3 VAAIEAGKDIALANKETMI--AGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVEK 74 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV--~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~~ 74 (285)
..|+++||.|.+ .|-.-. .-+.-+.+.++++|..+.. -+..+..+-+++......+|..+-.+-+ ..+
T Consensus 80 ~~al~~Gk~v~~-ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~~~~~~--- 155 (332)
T 2glx_A 80 LAAIRAGKHVLC-EKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAVYLP--- 155 (332)
T ss_dssp HHHHHTTCEEEE-CSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTTSSEEEEEEEEECBCC---
T ss_pred HHHHHCCCeEEE-eCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCCCCeEEEEEEEcccCC---
Confidence 578999998765 442211 1234467778888876643 3455677777777655455666655544 222
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC--------CcceeeeEEeecccE
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP--------QSILHSMIETQDSSV 144 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp--------qSivHs~V~f~DGs~ 144 (285)
-..++|..-++- -..+.|++-|.-.|. ++||||-++.++...... .-..+.+++|.||.+
T Consensus 156 ---------~~~~~w~~~~~~-~ggG~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~~~~~~~d~~~~~l~~~~G~~ 224 (332)
T 2glx_A 156 ---------PHLQGWRLERPE-AGGGVILDITVHDADTLRFVLNDDPAEAVAISHSAGMGKEGVEDGVMGVLRFQSGVI 224 (332)
T ss_dssp ---------GGGTTGGGSCTT-TTCSHHHHTHHHHHHHHHHHHTSCEEEEEEEEECCSSSCTTCCSEEEEEEEETTSCE
T ss_pred ---------CCCCCcccccCC-CCCchHhhhhHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCccceEEEEEEECCCcE
Confidence 123567544221 134678888776665 579999878888877532 235788899999864
No 15
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=71.75 E-value=27 Score=31.52 Aligned_cols=131 Identities=11% Similarity=0.191 Sum_probs=78.9
Q ss_pred hHHHHHcCCceeeecccch-hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChhh
Q 040690 2 TVAAIEAGKDIALANKETM-IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl-V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~~ 74 (285)
+..|+++||.|..-.-=++ +..+.-+.+.++++|..+.. -+.....+-+++......+|..+-.+.. ..+...
T Consensus 92 ~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~~~~~ 171 (354)
T 3q2i_A 92 SIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQEY 171 (354)
T ss_dssp HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTCSEEEEEEEEECBCCHHH
T ss_pred HHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCCCceEEEEEEEEEecCchh
Confidence 3578999988765321011 22355667788888876642 2334455566666555455665555443 222221
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeecccE
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQDSSV 144 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~DGs~ 144 (285)
...+.|..-.+- +.+.|++-|.-.|. ++|||| +++.+.+.... .-..+.+++|.||.+
T Consensus 172 ---------~~~~~w~~~~~~--~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~~~~~~d~~~~~l~~~~G~~ 237 (354)
T 3q2i_A 172 ---------YDAAGWRGTWEF--DGGAFMNQASHYVDLLDWLIG-PVESVQAYTATLARNIEVEDTGTVSVKWRSGAL 237 (354)
T ss_dssp ---------HHTSTTTTCTTT--TCCCCCCCTHHHHHHHHHHHC-CEEEEEEEEECSSSSSSSCSEEEEEEEETTSCE
T ss_pred ---------ccccCccccccC--CCchhhhhhhHHHHHHHHhcC-CceEEEEEeeccCCCCCccceeEEEEEECCCCE
Confidence 222356533222 26778888776666 489999 88888887743 245788999999974
No 16
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Probab=68.74 E-value=2.1 Score=40.20 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=53.1
Q ss_pred HHHHHcCCceeeecccchh---cccccchHHHhhcCCeEe---------eCCchhhHHHHHh-cCCCCCccceE--EEec
Q 040690 3 VAAIEAGKDIALANKETMI---AGGPFILPLAHKHNIKFL---------PADSEHSAVFQCI-QGLPEGALWRI--ILTA 67 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV---~aG~li~~~~~~~~~~i~---------PvDSEHsAifQ~L-~~~~~~~v~~i--ilTA 67 (285)
..|+++||-|..|||+-+. .-|+-|. .|+++|..+. |+ ...+-++| .|.+ |.+| |+..
T Consensus 102 ~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~giPi---i~~l~~~l~~G~~---I~~I~GIlnG 174 (358)
T 1ebf_A 102 TKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAGLPI---ISFLREIIQTGDE---VEKIEGIFSG 174 (358)
T ss_dssp HHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTTSSC---HHHHHHHHHHTCC---EEEEEEECCH
T ss_pred HHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccCCcH---HHHHHHHHHcCCC---eEEEEEEEee
Confidence 4799999999999999887 5567777 8999997765 63 77788888 4543 5555 3333
Q ss_pred c-CCChhhh-----hcCCHHHHhc
Q 040690 68 S-DWPVEKM-----KEITVADALK 85 (285)
Q Consensus 68 S-~~~~~~l-----~~vt~~~Al~ 85 (285)
+ ++=+.+| ...+.++||+
T Consensus 175 T~nyil~~m~~~~~~g~~f~~~l~ 198 (358)
T 1ebf_A 175 TLSYIFNEFSTSQANDVKFSDVVK 198 (358)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHH
T ss_pred cceeeecccccccccCCCHHHHHH
Confidence 3 3334443 3567777765
No 17
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=67.64 E-value=31 Score=30.75 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=81.7
Q ss_pred hHHHHHcCCceeeecccchhc--ccccchHHHhhcCCeEeeC-----Cch-hhHHHHHhcCCCCCccceEEEecc-CCCh
Q 040690 2 TVAAIEAGKDIALANKETMIA--GGPFILPLAHKHNIKFLPA-----DSE-HSAVFQCIQGLPEGALWRIILTAS-DWPV 72 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~--aG~li~~~~~~~~~~i~Pv-----DSE-HsAifQ~L~~~~~~~v~~iilTAS-~~~~ 72 (285)
+.+|+++||.|.+ .|=.-+. -..-+.+.++++|..+.-- +.. +..+-+++......+|..+-.+.+ .+.
T Consensus 83 ~~~al~aGkhVl~-EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~~g~iG~i~~v~~~~~~~~~- 160 (336)
T 2p2s_A 83 ALRTLDAGKDFFT-AKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQRGEIGRVIQTMGVGPHRER- 160 (336)
T ss_dssp HHHHHHTTCEEEE-CSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHTTTTSSEEEEEEEEECBCC-
T ss_pred HHHHHHCCCcEEE-eCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHhCCCCCceEEEEEEccccCC-
Confidence 4579999998765 5632222 2445677888888776632 555 777778887655556666655433 111
Q ss_pred hhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCC-CCceeEEEc----C-----CcceeeeEEeec
Q 040690 73 EKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAG-YDNIEIVIH----P-----QSILHSMIETQD 141 (285)
Q Consensus 73 ~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~-~~~I~vvIH----p-----qSivHs~V~f~D 141 (285)
+ ..|.|..-+.- ..+.|++-|.-.|- ++||||-+ ++.+..... | .-..+.+++|.|
T Consensus 161 -------~----~~~~w~~~~~~--~gG~l~d~g~H~id~~~~l~G~~~~~~v~a~~~~~~~~~~~~~~d~~~~~l~~~~ 227 (336)
T 2p2s_A 161 -------G----ARPDWFYQKRQ--YGGILCDIGIHQIEQFLYFTGNTNARVVTSQTANYHHPHHPEFEDFGDAMLLGDN 227 (336)
T ss_dssp -------S----CCCGGGGCHHH--HCCHHHHTHHHHHHHHHHHHTCSCEEEEEEEEECSSCTTSTTCCSEEEEEEEETT
T ss_pred -------C----CCCCceecccc--cCCeeehhhhhHHHHHHHHhCCCCceEEEEeEEeecCCCCCCccchheEEEEECC
Confidence 1 25678653322 35678998888777 68999986 466666542 2 235677889999
Q ss_pred ccE
Q 040690 142 SSV 144 (285)
Q Consensus 142 Gs~ 144 (285)
|.+
T Consensus 228 G~~ 230 (336)
T 2p2s_A 228 GAT 230 (336)
T ss_dssp SCE
T ss_pred CcE
Confidence 854
No 18
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=65.98 E-value=33 Score=30.67 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=78.7
Q ss_pred hHHHHHcCCceeeecccch-hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCChhhh
Q 040690 2 TVAAIEAGKDIALANKETM-IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKM 75 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl-V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~l 75 (285)
+..|+++||.|.+-.-=++ +....-+.+.++++|..+.. -+..+..+-+++......+|..+-.+-+. +.
T Consensus 84 ~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~i~~~~~~-~~--- 159 (330)
T 3e9m_A 84 AKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLGEILWVQSVTAY-PN--- 159 (330)
T ss_dssp HHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTCSEEEEEEEEEE-SC---
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCCCeEEEEEEecc-cC---
Confidence 3578999988764221010 12234566788888876542 34556667777765554456655554441 11
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-----CcceeeeEEeecccE
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-----QSILHSMIETQDSSV 144 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-----qSivHs~V~f~DGs~ 144 (285)
-..+.|..-+.. ..+.|++-|.-.|. ++||||-+++++.+..+. .-..+.+++|.||.+
T Consensus 160 --------~~~~~w~~~~~~--ggG~l~d~g~H~id~~~~l~G~~~~~v~a~~~~~~~~~~d~~~~~l~~~~G~~ 224 (330)
T 3e9m_A 160 --------VDHIPWFYSREA--GGGALHGSGSYPLQYLQYVLGKEIQEVTGTATYQQGATDSQCNLALKFAEGTL 224 (330)
T ss_dssp --------CTTCGGGGCTTT--TCSHHHHHSHHHHHHHHHHHTCCEEEEEEEEEECSSSCEEEEEEEEEETTTEE
T ss_pred --------CCCcCcccCccc--CCCHHHHhhHHHHHHHHHHhCCCceEEEEEEEeCCCCcceEEEEEEEECCCCE
Confidence 123567543332 45778888765555 679999888888877642 235678889999864
No 19
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=65.60 E-value=30 Score=30.74 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=77.8
Q ss_pred HHHHHcCCceeeecccch--hcccccchHHHhhcCCeEeeC-----CchhhHHHHHhcCCCCCccceEEEeccCCChhhh
Q 040690 3 VAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLPA-----DSEHSAVFQCIQGLPEGALWRIILTASDWPVEKM 75 (285)
Q Consensus 3 ~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~Pv-----DSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~l 75 (285)
.+|+++||.|.. .|=.- +..+.-+.+.++++|..+..- +..+..+-+++......+|..+..+... +.
T Consensus 81 ~~al~~Gk~V~~-EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~~~-~~--- 155 (323)
T 1xea_A 81 AFFLHLGIPTFV-DKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQQECGALRSLRWEKHR-HA--- 155 (323)
T ss_dssp HHHHHTTCCEEE-ESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHHTSCTTCSEEEEEEEC-BS---
T ss_pred HHHHHCCCeEEE-eCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhcCCcCCceEEEEEecC-CC---
Confidence 478999998764 45322 223556778888888766532 4556666666665444456555443321 10
Q ss_pred hcCCHHHHhcCC-CCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEc--CCcceeeeEEeecccEEEecC
Q 040690 76 KEITVADALKHP-IWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIH--PQSILHSMIETQDSSVIGQLG 149 (285)
Q Consensus 76 ~~vt~~~Al~HP-~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIH--pqSivHs~V~f~DGs~~a~~~ 149 (285)
.| .| ...|++-|.=.|. ++||||-++.++..... .+...+++++|.+|...+.++
T Consensus 156 ----------~p~~~---------~g~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~d~~~~~~~~~~g~~~~~~~ 214 (323)
T 1xea_A 156 ----------LPGDI---------RTFVFDDFIHPLDSVNLSRQCNLDDLHLTYHMSEGLLARLDVQWQTGDTLLHAS 214 (323)
T ss_dssp ----------CCBCH---------HHHHHTTTHHHHHHHCTTCCCSCTTEEEEEEEETTEEEEEEEEEEETTEEEEEE
T ss_pred ----------Ccccc---------hhhhhhcceeHHHHHHHHhCCCceEEEEEEeecCCceEEEEEEEcCCCEEEEEE
Confidence 02 12 1357777776666 47999988888888765 456788999999887555543
No 20
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=65.12 E-value=77 Score=28.34 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=76.4
Q ss_pred hHHHHHcCCceeeecccc--hhcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCChhh
Q 040690 2 TVAAIEAGKDIALANKET--MIAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANKEs--lV~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~ 74 (285)
+.+|+++||.|.+- |=. =+.-..-+.+.++++|..+.. -+..+..+-+++......+|..+-.+-+ +
T Consensus 82 ~~~al~aGk~Vl~E-KP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~-~---- 155 (345)
T 3f4l_A 82 AKRALEAGKNVLVE-KPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFD-Y---- 155 (345)
T ss_dssp HHHHHHTTCEEEEC-SSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHSTTCSEEEEEEECC-C----
T ss_pred HHHHHHcCCcEEEe-CCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhcCCCCCeEEEEEEee-c----
Confidence 35789999988764 411 122344566788888876542 2344455666665433334444332221 1
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeecccEEE
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQDSSVIG 146 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~DGs~~a 146 (285)
..|.|....+ .-..+.|++-|.=.|. ++|||| +++++.+.... .-..+.+++|.+|.+..
T Consensus 156 ----------~~~~~~~~~~-~~~gG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~~~~~~d~~~~~l~~~~~~~~~ 223 (345)
T 3f4l_A 156 ----------YRPVAETKPG-LPQDGAFYGLGVHTMDQIISLFG-RPDHVAYDIRSLRNKANPDDTFEAQLFYGDLKAIV 223 (345)
T ss_dssp ----------BCCCCCCCCC-CGGGSHHHHTHHHHHHHHHHHHC-SCSEEEEEEECCSCTTSSCCEEEEEEEETTEEEEE
T ss_pred ----------cCCccccCCC-CCCCchhheehHHHHHHHHHHhC-CCeEEEEEEEEecCCCCcceEEEEEEEECCEEEEE
Confidence 1233321111 2235788888877777 579999 57788776532 34678889999887665
Q ss_pred ecC
Q 040690 147 QLG 149 (285)
Q Consensus 147 ~~~ 149 (285)
..+
T Consensus 224 ~~s 226 (345)
T 3f4l_A 224 KTS 226 (345)
T ss_dssp EEC
T ss_pred EEE
Confidence 555
No 21
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=63.85 E-value=35 Score=31.04 Aligned_cols=126 Identities=12% Similarity=0.157 Sum_probs=77.5
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||.|.+ -|=.- +.-..-+.+.++++|..+.- -+..+..+-+++.....-+|..+-.+-. ..+
T Consensus 85 ~~~al~aGkhVl~-EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~-- 161 (359)
T 3m2t_A 85 GLLAMSKGVNVFV-EKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQVDEFGETLHIQLNHYANKP-- 161 (359)
T ss_dssp HHHHHHTTCEEEE-CSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHTSGGGCCEEEEEEEEECCCC--
T ss_pred HHHHHHCCCeEEE-ECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHHCCCCCCeEEEEEEEecCCC--
Confidence 3678999998765 22211 11244466788888865432 2344455556665433333444433322 111
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHH-hhhhCCCCCceeEEEc---CCcceeeeEEeecccE
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEA-HYLFGAGYDNIEIVIH---PQSILHSMIETQDSSV 144 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA-~~LF~~~~~~I~vvIH---pqSivHs~V~f~DGs~ 144 (285)
..|.|...+. ..+.|++-|.-.|.. .||||-+++++.+..+ ....++.+++|.||.+
T Consensus 162 -----------~~~~w~~~~~---~gg~l~d~~~H~iD~~~~l~G~~~~~V~a~~~~~~~~d~~~~~l~~~~G~~ 222 (359)
T 3m2t_A 162 -----------RAPLWGLDST---LRSFLLAQAIHTIDLAITFGDGELRRVQSSVQRHDDALIVRADMAFSSGAT 222 (359)
T ss_dssp -----------SSCCTTCSCH---HHHHHHHTHHHHHHHHHHHHCSCEEEEEEEEEEETTEEEEEEEEEETTSCE
T ss_pred -----------CCCCcccCCC---ccchhhhcccHHHHHHHHHhCCCceEEEEEeeccCCCeEEEEEEEECCCCE
Confidence 2478987654 357788888777764 6899988888888775 3446788999999975
No 22
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=63.35 E-value=44 Score=29.91 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=73.4
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEeeC------CchhhHHHHHhcCCCCCccceEEEeccCCChh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLPA------DSEHSAVFQCIQGLPEGALWRIILTASDWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~Pv------DSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~ 73 (285)
+.+|+++||.|.+ -|=.- +....-+.+.++++|..++=| +..+..+-+++......+|..+..+-.+..
T Consensus 83 ~~~al~~Gk~vl~-EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~-- 159 (344)
T 3mz0_A 83 VLKAIKAQKYVFC-EKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCAHRNPT-- 159 (344)
T ss_dssp HHHHHHTTCEEEE-CSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHTTTTSSEEEEEEEEECSC--
T ss_pred HHHHHHCCCcEEE-cCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHcCCCCCcEEEEEEecCCC--
Confidence 3578999988764 22111 123445667888888766433 555666777776554445554443322111
Q ss_pred hhhcCCHHHHhcCC-CCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC---------CcceeeeEEeecc
Q 040690 74 KMKEITVADALKHP-IWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP---------QSILHSMIETQDS 142 (285)
Q Consensus 74 ~l~~vt~~~Al~HP-~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp---------qSivHs~V~f~DG 142 (285)
.| .|. | .+.|++-|.-.|. ++||||-++.++.+.... .-..+.+++|.||
T Consensus 160 ------------~~~~w~-g------gg~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~~~~~~~~D~~~~~l~~~~G 220 (344)
T 3mz0_A 160 ------------VGDNYT-T------DMAVVDTLVHEIDVLHWLVNDDYESVQVIYPKKSKNALPHLKDPQIVVIETKGG 220 (344)
T ss_dssp ------------CCTTCC-T------THHHHTTTHHHHHHHHHHHTCCEEEEEEECCSCCTTSCTTCCCSEEEEEEETTC
T ss_pred ------------CCcccc-C------CchhhhhhhHHHHHHHHhcCCCcEEEEEEEeccccccCCCCCceEEEEEEECCC
Confidence 13 465 2 3567887766655 579999877777766432 2346789999998
Q ss_pred cE
Q 040690 143 SV 144 (285)
Q Consensus 143 s~ 144 (285)
.+
T Consensus 221 ~~ 222 (344)
T 3mz0_A 221 IV 222 (344)
T ss_dssp CE
T ss_pred CE
Confidence 74
No 23
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=62.90 E-value=36 Score=30.89 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=74.0
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEeeC------CchhhHHHHHhcCCCCCccceEEEeccCCChh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLPA------DSEHSAVFQCIQGLPEGALWRIILTASDWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~Pv------DSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~ 73 (285)
+..|+++||.|.+- |=.- +....-+.+.++++|..++=| +..+..+-+++......+|..+..+-.+..
T Consensus 104 ~~~al~aGk~Vl~E-KPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~-- 180 (357)
T 3ec7_A 104 AVAALNANKYVFCE-KPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGRHYNAS-- 180 (357)
T ss_dssp HHHHHHTTCEEEEE-SSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHHTTTCSEEEEEEEEECSC--
T ss_pred HHHHHHCCCCEEee-cCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhcCCCCCeEEEEEEEeCCC--
Confidence 35789999887642 2111 112344667888888766433 555666666666544444554443322211
Q ss_pred hhhcCCHHHHhcCC-CCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcCC--------cceeeeEEeeccc
Q 040690 74 KMKEITVADALKHP-IWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHPQ--------SILHSMIETQDSS 143 (285)
Q Consensus 74 ~l~~vt~~~Al~HP-~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHpq--------SivHs~V~f~DGs 143 (285)
.| .|. | .+.|++-|.-.|. ++||||-++.++.+..... -....+++|.||.
T Consensus 181 ------------~p~~w~-g------gg~l~d~g~H~iDl~~~l~G~~~~~V~a~~~~~~~~~~~~~D~~~~~l~~~~G~ 241 (357)
T 3ec7_A 181 ------------TVPEYK-T------PQAIYETLIHEIDVMHWLLNEDYKTVKVYFPRQSSLVTTLRDPQLVVMETTSGI 241 (357)
T ss_dssp ------------CCTTCC-T------THHHHTTHHHHHHHHHHHHTCCEEEEEEECCSCCTTCCSSCCSEEEEEEETTCC
T ss_pred ------------CCcccc-C------CchhhhcccHHHHHHHHHcCCCceEEEEEEecccccCCCcceeEEEEEEECCCC
Confidence 12 476 2 3568888877666 4799998777777765432 3567889999987
Q ss_pred EE
Q 040690 144 VI 145 (285)
Q Consensus 144 ~~ 145 (285)
+.
T Consensus 242 ~~ 243 (357)
T 3ec7_A 242 NI 243 (357)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 24
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=62.56 E-value=75 Score=28.53 Aligned_cols=125 Identities=12% Similarity=0.171 Sum_probs=73.9
Q ss_pred hHHHHHcCCceeeecc-cchhcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccC-CChhh
Q 040690 2 TVAAIEAGKDIALANK-ETMIAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASD-WPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANK-EslV~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~-~~~~~ 74 (285)
+.+|+++||.|.+-.- -.=+.-..-+.+.++++|..+.. -+..+..+-+++......+|..+-.+-+. .+.
T Consensus 84 ~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~~~~~~-- 161 (352)
T 3kux_A 84 AQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPE-- 161 (352)
T ss_dssp HHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTCSEEEEEEEEECBCCS--
T ss_pred HHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhcCCCCceEEEEEEEeccCCC--
Confidence 4679999998876322 01122345577888888876543 13344556666654444445544333221 111
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHH-hhhhCCCCCceeEEEcC-------CcceeeeEEeecc
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEA-HYLFGAGYDNIEIVIHP-------QSILHSMIETQDS 142 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA-~~LF~~~~~~I~vvIHp-------qSivHs~V~f~DG 142 (285)
..+.|..=+ .-..+.|++-|.-.|.. .|||| ++.++.+.... .-..+.+++| +|
T Consensus 162 ----------~~~~w~~~~--~~ggG~l~d~g~H~id~~~~l~G-~p~~v~a~~~~~~~~~~~~d~~~~~l~~-~g 223 (352)
T 3kux_A 162 ----------IRQRWREQA--GAGGGIWYDLGPHLLDQALQLFG-LPETLNVDLGMLRPGSQSVDYFHAVLSY-PG 223 (352)
T ss_dssp ----------SCSSCSCC-----CBCHHHHHHHHHHHHHHHHHC-CCSEEEEEEECCSTTCCSBCEEEEEEEE-TT
T ss_pred ----------CCcccccCC--CCCCceeehhhhHHHHHHHHHhC-CCeEEEEEEEEecCCCCcccEEEEEEEE-CC
Confidence 146786432 34567888888777764 89999 57888887632 2356788888 55
No 25
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=62.41 E-value=66 Score=29.23 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=80.4
Q ss_pred hHHHHHcCCceeeecccc-hhcccccchHHHhhcCCeEeeC-----C-chhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKET-MIAGGPFILPLAHKHNIKFLPA-----D-SEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEs-lV~aG~li~~~~~~~~~~i~Pv-----D-SEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||.|.+-.-=+ =+.-..-+.+.++++|..+.-- | ..+..+-+++......+|..+..+.+ .+..
T Consensus 105 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~- 183 (361)
T 3u3x_A 105 AIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRR- 183 (361)
T ss_dssp HHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHHTTTTSSEEEEEEEEECCCCG-
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHHcCCCCCeEEEEEecccccCC-
Confidence 467999999887633211 1223555778888888765432 4 44556667776555556666655443 2221
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCc-eeEEE----cC-----CcceeeeEEeecc
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDN-IEIVI----HP-----QSILHSMIETQDS 142 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~-I~vvI----Hp-----qSivHs~V~f~DG 142 (285)
-..|.|..-++. ..+.|++-|.=.|. +.||||-++.+ +.+.. +| .-..+.+++|.||
T Consensus 184 ----------~~~~~w~~~~~~--~GG~l~d~g~H~iD~~~~l~G~~~~~~v~a~~~~~~~~~~~~~~d~~~~~l~~~~G 251 (361)
T 3u3x_A 184 ----------ETRPDWFFRRAD--YGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRT 251 (361)
T ss_dssp ----------GGSCGGGTCHHH--HCCHHHHHSHHHHHHHHHHHCCSCCEEEEEEEECCSCTTSTTSCCEEEEEEECSSC
T ss_pred ----------CCCCCcccCcCc--cCchHHhhhhHHHHHHHHHhCCCCeEEEEEEeecccCCCCCCCCceEEEEEEECCc
Confidence 135678654332 35788888876665 78999986543 45544 33 2356789999999
Q ss_pred cEE
Q 040690 143 SVI 145 (285)
Q Consensus 143 s~~ 145 (285)
...
T Consensus 252 ~~~ 254 (361)
T 3u3x_A 252 TGM 254 (361)
T ss_dssp EEE
T ss_pred eEE
Confidence 733
No 26
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=56.38 E-value=66 Score=29.08 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=72.3
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccC-CChh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASD-WPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~-~~~~ 73 (285)
+.+|+++||.|.+= |=.- +.-..-+.+.++++|..+.- -+.....+-+++......+|..+-.+-+. .+.
T Consensus 82 ~~~al~aGkhVl~E-KP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~~~~~~~- 159 (362)
T 3fhl_A 82 AGMALEAGKNVVVE-KPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAKSLLGRLVEYESTFARYRNF- 159 (362)
T ss_dssp HHHHHHTTCEEEEE-SSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTTTSSEEEEEEEEECBCCC-
T ss_pred HHHHHHCCCeEEEe-cCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHcCCCCCeEEEEEEecccCCC-
Confidence 46789999987651 2110 11234566788888876542 24455666666665444455555443321 111
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeec---c
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQD---S 142 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~D---G 142 (285)
.....|..-+. -..+.|++-|.=.|. +.|||| +++++.+.... .-.++.+++|.+ |
T Consensus 160 ----------~~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G-~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~~~~G 226 (362)
T 3fhl_A 160 ----------IKPNTWKETGE--SGGGLTYNLGSHLIDQAIQLFG-MPEAVFADLGILREGGKVDDYFIIHLLHPSLAPN 226 (362)
T ss_dssp --------------------------CHHHHTHHHHHHHHHHHHC-CEEEEEEEEECCSTTCCSCCEEEEEEEEETTSTT
T ss_pred ----------CCccccccCCC--CCCceeeeehhhHHHHHHHHhC-CCcEEEEEEEEeCCCCCcceEEEEEEEECCCCCC
Confidence 01124765433 357788888877776 579999 88888887653 446788999998 7
Q ss_pred cE
Q 040690 143 SV 144 (285)
Q Consensus 143 s~ 144 (285)
.+
T Consensus 227 ~~ 228 (362)
T 3fhl_A 227 VK 228 (362)
T ss_dssp SE
T ss_pred eE
Confidence 54
No 27
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=55.91 E-value=69 Score=29.08 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=70.9
Q ss_pred hHHHHHcCCceeeeccc--chhcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccC-CChh
Q 040690 2 TVAAIEAGKDIALANKE--TMIAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASD-WPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKE--slV~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~-~~~~ 73 (285)
+.+|+++||.|.+ -|= .=+.-..-+.+.++++|..+.. -+.....+-+++......+|..+-.+-+. .+.
T Consensus 84 ~~~al~aGk~Vl~-EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~~~~~~- 161 (364)
T 3e82_A 84 ARLALNAGKHVVV-DKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQGTLGAVKHFESHFDRFRPE- 161 (364)
T ss_dssp HHHHHHTTCEEEE-CSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHTTTCSEEEEEEEEECBCCC-
T ss_pred HHHHHHCCCcEEE-eCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHcCCCcceEEEEEEeeccCCC-
Confidence 4678999998765 452 2223345567788888876542 24445566666664444445544333221 111
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeecccE
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQDSSV 144 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~DGs~ 144 (285)
..++|..-+ .-..+.|++-|.=.|. +.|||| +++++.+.... .-.++.+++|.|+..
T Consensus 162 -----------~~~~w~~~~--~~ggG~l~d~g~H~id~~~~l~G-~p~~V~a~~~~~~~~~~~~d~~~~~l~~~~~~~ 226 (364)
T 3e82_A 162 -----------VRVRWREQN--VPGSGLWFDLGPHLIDQALQLFG-LPQSVQGNIATLRDGAEINDWAHVVLNYPAHKV 226 (364)
T ss_dssp -----------C-------------CCHHHHHHHHHHHHHHHHHC-CCSEEEEEEECCSTTCCSCCEEEEEEECSSCEE
T ss_pred -----------CCcccccCC--CCCCChHHhhhhHHHHHHHHHhC-CCeEEEEEEEeecCCCCcccEEEEEEEECCEEE
Confidence 134676533 3356788898877776 589999 57888887632 224566777776333
No 28
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=52.88 E-value=82 Score=27.86 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=74.2
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCChhh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~ 74 (285)
+..|+++||.|.+- |=.- +.-..-+.+.++++|..+.. -+..+..+-+++......+|..+..+..+...
T Consensus 80 ~~~al~~gk~v~~E-KP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~~~~~~-- 156 (331)
T 4hkt_A 80 IERFARAGKAIFCE-KPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSA-- 156 (331)
T ss_dssp HHHHHHTTCEEEEC-SCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTCSEEEEEEEEECSSC--
T ss_pred HHHHHHcCCcEEEe-cCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCCceEEEEEEecCCCC--
Confidence 35788999887642 2111 11234466788888876542 34556666777765555566666555432100
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-----------CcceeeeEEeecc
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-----------QSILHSMIETQDS 142 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-----------qSivHs~V~f~DG 142 (285)
.+. .|. .-..+.|++-|.-.|. ++||||-+++++...... .-..+.+++|.+|
T Consensus 157 ----~~~------~~~-----~~~gG~l~d~g~H~ld~~~~l~G~~~~~v~a~~~~~~~~~~~~~~~~d~~~~~l~~~~G 221 (331)
T 4hkt_A 157 ----PPV------DYI-----KRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASG 221 (331)
T ss_dssp ----CCH------HHH-----HTTTCHHHHTHHHHHHHHHHHHCSCEEEEEEEEECCSCHHHHHTTCCSEEEEEEEETTC
T ss_pred ----Cch------hhh-----hcCCCeeehheehHHHHHHHHhCCCccEEEEEeccccccccccCCCcceEEEEEEECCC
Confidence 000 010 1124678888766665 579999777888777532 2346788999999
Q ss_pred cEE
Q 040690 143 SVI 145 (285)
Q Consensus 143 s~~ 145 (285)
.+.
T Consensus 222 ~~~ 224 (331)
T 4hkt_A 222 KQA 224 (331)
T ss_dssp CEE
T ss_pred CEE
Confidence 753
No 29
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=51.17 E-value=1e+02 Score=28.24 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=76.0
Q ss_pred hHHHHHcCCceeeecccchh--cccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETMI--AGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV--~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||-|.+ -|=.-. .-..-+.+.++++|..+.- -+.....+-+++.....-+|..+-.+-+ +|...
T Consensus 102 ~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~G~iG~i~~v~~~~~~~~~~~ 180 (398)
T 3dty_A 102 TKAALEAGLHVVC-EKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAAGELGDVRMVHMQFAHGFHSA 180 (398)
T ss_dssp HHHHHHTTCEEEE-CSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHTTTTCSEEEEEEEEECCTTCC
T ss_pred HHHHHHCCCeEEE-eCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCCeEEEEEEEecccccC
Confidence 4679999998865 332211 2344566788888865532 2344556666776555556666655543 33221
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-Hhhh-hCCCCCceeEEEc--------CCcceeeeEEeeccc
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYL-FGAGYDNIEIVIH--------PQSILHSMIETQDSS 143 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~L-F~~~~~~I~vvIH--------pqSivHs~V~f~DGs 143 (285)
... .--....|..-++.+=.++.|++-|.=.|. ++|| ||.+++++.+... -.-..+.+++|.||.
T Consensus 181 ~~~-----~~~~~~~Wr~~~~~~G~gG~l~d~g~H~idl~~~l~~G~~~~~V~a~~~~~~~~~~~~~D~~~~~l~~~~G~ 255 (398)
T 3dty_A 181 PVE-----AQSQATQWRVDPRQAGPSYVLGDVGTHPLYLSEVMLPDLKIKRLMCSRQSFVASRAPLEDNAYTLMEYEGGA 255 (398)
T ss_dssp -----------------------CCCSHHHHTTHHHHHHHHHHCTTCCEEEEEEEEECSSGGGTTSCSEEEEEEEETTSC
T ss_pred ccc-----cccCCCCcccCHHHcCCccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeEeecCCCCCcceEEEEEEEECCCC
Confidence 110 002345787666554445678888765555 5688 8988888887764 234678899999996
Q ss_pred EE
Q 040690 144 VI 145 (285)
Q Consensus 144 ~~ 145 (285)
+-
T Consensus 256 ~~ 257 (398)
T 3dty_A 256 MG 257 (398)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 30
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=50.99 E-value=61 Score=29.09 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=78.3
Q ss_pred hHHHHHcCCceeeecccchhc--ccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETMIA--GGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~--aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||.|.+ -|=.-.. -..-+.+.++++|..+.. -+.....+-+++......+|..+-.+.. .++..
T Consensus 99 ~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~~~~ 177 (340)
T 1zh8_A 99 IEKALRKGVHVIC-EKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVESGAIGDPVFMNWQIWVGMDEN 177 (340)
T ss_dssp HHHHHHTTCEEEE-ESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHHTTTTSSEEEEEEEEEBCCCTT
T ss_pred HHHHHHCCCcEEE-eCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCCcEEEEEEEecccccc
Confidence 4679999998866 2432111 234466788888866542 2566667777776555445665554433 22111
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeecccE
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQDSSV 144 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~DGs~ 144 (285)
. ....+.|..-++- ..+.|++-|.-.|. +.|||| +++++...... .-..+.+++|.||.+
T Consensus 178 ~--------~~~~~~w~~~~~~--~GG~l~d~g~H~ld~~~~l~G-~~~~V~a~~~~~~~~~~~~D~~~~~l~~~~G~~ 245 (340)
T 1zh8_A 178 N--------KYVHTDWRKKPKH--VGGFLSDGGVHHAAAMRLILG-EIEWISAVAKDLSPLLGGMDFLSSIFEFENGTV 245 (340)
T ss_dssp C--------SGGGCHHHHTTCS--TTTHHHHHHHHHHHHHHHHHC-CEEEEEEEEECCCTTSSSCCEEEEEEEETTSCE
T ss_pred C--------CCCCcCceECCcC--CCceeeeccHHHHHHHHHhhC-CCeEEEEEEEccCCCCCCcceEEEEEEeCCCCE
Confidence 0 0122456543322 34678888766665 479999 88888877642 345678899999864
No 31
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=50.37 E-value=93 Score=27.67 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=74.7
Q ss_pred hHHHHHcCCceeeecccc-hhcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccC--CChh
Q 040690 2 TVAAIEAGKDIALANKET-MIAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASD--WPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEs-lV~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~--~~~~ 73 (285)
+..|+++||.|.+-.-=+ =+....-+.+.+++.|..+.. -+..+..+-+++......+|..+..+... .+..
T Consensus 82 ~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~~~~~ 161 (344)
T 3euw_A 82 ITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIGNLEQLVIISRDPAPAPK 161 (344)
T ss_dssp HHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSSEEEEEEEEECSSCCCH
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCc
Confidence 357889998876532101 112244566778888865442 24566677777776555566666554332 1100
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-----------CcceeeeEEeec
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-----------QSILHSMIETQD 141 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-----------qSivHs~V~f~D 141 (285)
.| ..-..+.|++-|.-.|. ++|||| +++++.+.... .-.++.+++|.|
T Consensus 162 --------------~~-----~~~~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~~~~~~~~~~D~~~~~l~~~~ 221 (344)
T 3euw_A 162 --------------DY-----IAGSGGIFRDMTIHDLDMARFFVP-NIVEVTATGANVFSQEIAEFNDYDQVIVTLRGSK 221 (344)
T ss_dssp --------------HH-----HHHSCHHHHHTHHHHHHHHHHHCS-CEEEEEEEEECSSCHHHHHTTCCSEEEEEEEETT
T ss_pred --------------cc-----ccCCCceeecchhhHHHHHHHhcC-CcEEEEEEecccccccccccCCCceEEEEEEECC
Confidence 12 11234678887766665 579999 88888887532 234678999999
Q ss_pred ccEE
Q 040690 142 SSVI 145 (285)
Q Consensus 142 Gs~~ 145 (285)
|.+.
T Consensus 222 G~~~ 225 (344)
T 3euw_A 222 GELI 225 (344)
T ss_dssp SCEE
T ss_pred CcEE
Confidence 9753
No 32
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=49.59 E-value=61 Score=28.91 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=76.7
Q ss_pred hHHHHHcCCceeeecccchhc--ccccchHHHhhcCCeE-eeC------CchhhHHHHHhcCCCCCccceEEEecc-CCC
Q 040690 2 TVAAIEAGKDIALANKETMIA--GGPFILPLAHKHNIKF-LPA------DSEHSAVFQCIQGLPEGALWRIILTAS-DWP 71 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~--aG~li~~~~~~~~~~i-~Pv------DSEHsAifQ~L~~~~~~~v~~iilTAS-~~~ 71 (285)
+.+|+++||.|. .-|=.-.. -..-+.+.++++|..+ +-| +..+..+-+++......+|..+-...+ ++.
T Consensus 84 ~~~al~aGkhVl-~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~i~~~~~~~~~ 162 (337)
T 3ip3_A 84 LLEALERKIHAF-VEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSEGAVGEIRLVNTQKSYKLG 162 (337)
T ss_dssp HHHHHHTTCEEE-ECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHHTTTSSEEEEEEEEEBCCC
T ss_pred HHHHHHCCCcEE-EeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhcCCccceEEEEEEecccCC
Confidence 467999999865 44533322 3455678888888662 222 445566666666544445655544443 222
Q ss_pred hhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC---------CcceeeeEEeec
Q 040690 72 VEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP---------QSILHSMIETQD 141 (285)
Q Consensus 72 ~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp---------qSivHs~V~f~D 141 (285)
. .|.|-.-+. -..+.|++-|.-.|. ++||||-++.++.+.... ....+.+++|.|
T Consensus 163 ~-------------~~~~~~~~~--~~gG~l~d~g~H~iD~~~~l~G~~~~~V~a~~~~~~~~~~~~~~d~~~~~l~~~~ 227 (337)
T 3ip3_A 163 Q-------------RPDFYKKRE--TYGGTIPWVGIHAIDWIHWITGKKFLSVYATHSRLHNSGHGELETTALCHFTLEN 227 (337)
T ss_dssp S-------------CCGGGGSHH--HHCCHHHHTTHHHHHHHHHHHCCCEEEEEEEEECTTCTTCTTCCSEEEEEEEEGG
T ss_pred C-------------Ccchhhccc--ccCCchhhcchHHHHHHHHhcCCCceEEEEEecccccCCCCCcceEEEEEEEECC
Confidence 1 345532111 124577887765555 589999877777776432 235788999999
Q ss_pred ccE
Q 040690 142 SSV 144 (285)
Q Consensus 142 Gs~ 144 (285)
|.+
T Consensus 228 G~~ 230 (337)
T 3ip3_A 228 EVF 230 (337)
T ss_dssp GEE
T ss_pred CcE
Confidence 864
No 33
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=46.86 E-value=1.5e+02 Score=26.14 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred hHHHHHcCCceeeecccch-hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCChhhh
Q 040690 2 TVAAIEAGKDIALANKETM-IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKM 75 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl-V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~l 75 (285)
+..|+++||.|.+-.-=++ +.-..-+.+.++++|..+.- -+.....+-+++......+|..+-.+.+. +.
T Consensus 84 ~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~~~-~~--- 159 (329)
T 3evn_A 84 AKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAY-PN--- 159 (329)
T ss_dssp HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTTCSEEEEEEEEEC-TT---
T ss_pred HHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCCCCeEEEEEEecc-CC---
Confidence 3578999998765321111 12234567788888876542 24445566667765555566666555442 11
Q ss_pred hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-----CcceeeeEEeecccE
Q 040690 76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-----QSILHSMIETQDSSV 144 (285)
Q Consensus 76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-----qSivHs~V~f~DGs~ 144 (285)
...+.|.--++ -..+.|++-|.-.|. +.||||-++..+....+. .-..+..++|.||.+
T Consensus 160 --------~~~~~w~~~~~--~gGG~l~d~g~H~id~~~~l~G~~~~~v~~~~~~~~~~~~d~~~~~l~~~~G~~ 224 (329)
T 3evn_A 160 --------IDHVTWFRELE--LGGGTVHFMAPYALSYLQYLFDATITHASGTATFPKGQSDSQSKLLLQLSNGVL 224 (329)
T ss_dssp --------GGGSTTTTCGG--GTCSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCTTSCCSEEEEEEEETTSCE
T ss_pred --------CCCcccccCcc--cCCcHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCcceEEEEEEEECCCCE
Confidence 12346753222 356788888766665 689999877777666532 235678899999875
No 34
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=46.63 E-value=80 Score=27.93 Aligned_cols=129 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred hHHHHHcCCceeeecccchhcc--cccchHHHhhc-CCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccC--CC
Q 040690 2 TVAAIEAGKDIALANKETMIAG--GPFILPLAHKH-NIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASD--WP 71 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV~a--G~li~~~~~~~-~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~--~~ 71 (285)
...|+++||.|.+ .|-.-... ..-+.+.++++ |..+.. -+..+..+-+++......+|..+-....+ .+
T Consensus 88 ~~~al~~G~~v~~-eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~~~~~~~ 166 (346)
T 3cea_A 88 TIYAMNAGLNVFC-EKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGKIIYMRGYGIDPISG 166 (346)
T ss_dssp HHHHHHTTCEEEE-CSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTTCSEEEEEEEEEEEGGG
T ss_pred HHHHHHCCCEEEE-cCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCCCCeEEEEEEecCCCCC
Confidence 3578999998765 55332222 22366777888 876643 24457777778876554456555443221 11
Q ss_pred hhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEc----C-------CcceeeeEEe
Q 040690 72 VEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIH----P-------QSILHSMIET 139 (285)
Q Consensus 72 ~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIH----p-------qSivHs~V~f 139 (285)
.... .....|..| .+.|++-|.-.|. ++||||-++.++..... | .-..+.+++|
T Consensus 167 ~~~~--------~~~~~~~~~------gG~l~d~g~H~lD~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~D~~~~~l~~ 232 (346)
T 3cea_A 167 MESF--------TKFATEADS------GGIFVDMNIHDIDLIRWFTGQDPVQAYGLTSNIAAPQLADIGEFETGVAQLKM 232 (346)
T ss_dssp HHHH--------HHHHHHSCC------CCHHHHTTHHHHHHHHHHHSCCEEEEEEEEECSSCGGGGGGTCCSEEEEEEEE
T ss_pred ChhH--------hhhcccCCC------CchHHHhhccHHHHHHHHcCCCCeEEEEEEeeccCccccccCCceeEEEEEEE
Confidence 1000 000012111 3567788777666 47999987777776653 2 1246788999
Q ss_pred ecccEE
Q 040690 140 QDSSVI 145 (285)
Q Consensus 140 ~DGs~~ 145 (285)
.||.+.
T Consensus 233 ~~G~~~ 238 (346)
T 3cea_A 233 SDGVIA 238 (346)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 998653
No 35
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=43.92 E-value=1.2e+02 Score=28.08 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=75.6
Q ss_pred hHHHHHcCCceeeecccch-hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChhh
Q 040690 2 TVAAIEAGKDIALANKETM-IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl-V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~~ 74 (285)
+.+|+++||-|.+-.-=++ +.-..-+.+.++++|..+.- -+.....+-+++.....-+|..+-.+-+ +|....
T Consensus 127 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~~~~~~~~~ 206 (417)
T 3v5n_A 127 AKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIENGDIGAVRLVQMEYPQDWLTEN 206 (417)
T ss_dssp HHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHTTTTCSEEEEEEEEECCTTSCC
T ss_pred HHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhcCCCCCeEEEEEEEecccccCc
Confidence 4678999998875322111 11233466788888865431 2444556667776555556666665544 443221
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeec----c
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQD----S 142 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~D----G 142 (285)
.. .+.-....|..-++.+=+++.|++-|.=.|. ++||||-+++++.+.... .-.++.+++|.| |
T Consensus 207 ~~----~~~~~~~~Wr~~~~~~G~gG~l~d~g~H~lDl~~~l~G~~~~~V~a~~~~~~~~~~~~D~~~~~l~~~~~~~~G 282 (417)
T 3v5n_A 207 IE----QSGQKQAAWRTDPARSGAGGSTGDIGTHAYNLGCFVSGLELEELAADLDSFVGGRQLDDNAHVLMRFREKDGTR 282 (417)
T ss_dssp ------------------------CCHHHHTHHHHHHHHHHHHCCCEEEEEEEEECCSTTCCSCCEEEEEEEECCBTTBC
T ss_pred cc----cccCCCcCcccCHHHcCCccHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCCceEEEEEEEECCCCCCC
Confidence 11 0012235687655554446788888765555 579999888888887652 456788999999 7
Q ss_pred cE
Q 040690 143 SV 144 (285)
Q Consensus 143 s~ 144 (285)
.+
T Consensus 283 ~~ 284 (417)
T 3v5n_A 283 AK 284 (417)
T ss_dssp CE
T ss_pred eE
Confidence 65
No 36
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=42.35 E-value=14 Score=31.42 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=32.2
Q ss_pred chhcccccchHHHhhcCCeEeeCCchhhHHHHHhc
Q 040690 19 TMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQ 53 (285)
Q Consensus 19 slV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~ 53 (285)
.+|.||.+..+.|++.|.+-+.+.|...+|.|.|.
T Consensus 144 ~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~ 178 (196)
T 2q5c_A 144 KIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIE 178 (196)
T ss_dssp CEEEECHHHHHHHHHTTCEEEECCCCHHHHHHHHH
T ss_pred eEEECCHHHHHHHHHcCCcEEEEecCHHHHHHHHH
Confidence 45889999999999999999999999999999886
No 37
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=36.53 E-value=2e+02 Score=25.92 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=75.4
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCChhh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWPVEK 74 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~~~~ 74 (285)
+.+|+++||.|..- |=.- +.-..-+.+.++++|..+.- -+.....+-+++......+|..+-.+-.... .
T Consensus 82 ~~~al~aGkhVl~E-KP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~-~- 158 (359)
T 3e18_A 82 AISALEAGKHVVCE-KPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGAN-G- 158 (359)
T ss_dssp HHHHHHTTCEEEEE-SSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTTSSEEEEEEEEECSS-C-
T ss_pred HHHHHHCCCCEEee-CCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCCCCeEEEEEEEecCC-C-
Confidence 35789999987642 2211 22345567788888865532 3445556666665444334443322211111 0
Q ss_pred hhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC------CcceeeeEEeecccE
Q 040690 75 MKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP------QSILHSMIETQDSSV 144 (285)
Q Consensus 75 l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp------qSivHs~V~f~DGs~ 144 (285)
..+.|..=+. -..+.|++-|.=.|. +.||||-+++.+.+.... .-..+.+++|.||.+
T Consensus 159 ----------~~~~wr~~~~--~gGG~l~d~g~H~iD~~~~l~G~~~~~v~a~~~~~~~~~~~d~~~~~l~~~~G~~ 223 (359)
T 3e18_A 159 ----------IPGDWRHLKA--HGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFENGIT 223 (359)
T ss_dssp ----------SCSSGGGCGG--GTCSHHHHTHHHHHHHHHHHCCSCEEEEEEEEECTTCCSSCSEEEEEEEETTSCE
T ss_pred ----------CCCCcccCcC--CCCcHHHHHhhHHHHHHHHHhCCCCeEEEEEEEecCCCCCCceEEEEEEECCCCE
Confidence 1246754222 345788888877766 579999777777776532 235788999999965
No 38
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=36.49 E-value=2.4e+02 Score=25.33 Aligned_cols=124 Identities=17% Similarity=0.243 Sum_probs=72.2
Q ss_pred hHHHHHcCCceeeeccc--chhcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKE--TMIAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKE--slV~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||.|.. -|= .=+.-..-+.+.++++|..+.. -+..+..+-+++......+|..+-.+-+ ..|.
T Consensus 82 ~~~al~aGkhVl~-EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~- 159 (358)
T 3gdo_A 82 TMACIQAGKHVVM-EKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPE- 159 (358)
T ss_dssp HHHHHHTTCEEEE-ESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTSSCSCCEEEEECCCBCCC-
T ss_pred HHHHHHcCCeEEE-ecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHhcCCCCceEEEEEEEeccCCC-
Confidence 4679999998876 332 1122345567888888876542 2445566667776555455666544432 1111
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-------CcceeeeEEeec
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-------QSILHSMIETQD 141 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-------qSivHs~V~f~D 141 (285)
..+.|..-+ .-..+.|++-|.=.|. +.|||| ++.++.+.... .-.++.+++|.|
T Consensus 160 -----------~~~~w~~~~--~~ggG~l~d~g~H~id~~~~l~G-~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~ 221 (358)
T 3gdo_A 160 -----------VQARWREKE--GTATGTLYDLGSHIIDQTLHLFG-MPKAVTANVMAQRENAETVDYFHLTLDYGK 221 (358)
T ss_dssp -----------C------------CCSHHHHTHHHHHHHHHHHHC-CCSEEEEEEECCSTTCCSCCEEEEEEEETT
T ss_pred -----------CCcccccCC--CCCCceeeeehhHHHHHHHHHcC-CCeEEEEEEEeecCCCCcCceEEEEEEECC
Confidence 124576321 2346788888877776 579999 88888887642 234677778877
No 39
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=31.79 E-value=2.8e+02 Score=25.84 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=80.5
Q ss_pred hHHHHHcC------Cceeeecccch--hcccccchHHHhhcCCeEeeC-----CchhhHHHHHhcCCCCCccceEEEecc
Q 040690 2 TVAAIEAG------KDIALANKETM--IAGGPFILPLAHKHNIKFLPA-----DSEHSAVFQCIQGLPEGALWRIILTAS 68 (285)
Q Consensus 2 t~~al~~g------k~iaLANKEsl--V~aG~li~~~~~~~~~~i~Pv-----DSEHsAifQ~L~~~~~~~v~~iilTAS 68 (285)
+.+|+++| |.|.+ -|=.- +.-..-+.+.++++|..+..- +..+..+-+++.....-+|..+-.+.+
T Consensus 106 ~~~al~aG~~~~~~khVl~-EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~~ 184 (438)
T 3btv_A 106 VMPLLEFSKNNPNLKYLFV-EWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELISQGYIGDINSIEIAGN 184 (438)
T ss_dssp HHHHHHHGGGCTTCCEEEE-ESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHHTTTTCSEEEEEEEEE
T ss_pred HHHHHHCCCCcccceeEEe-cCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHHcCCCCCcEEEEEEEc
Confidence 35789999 87765 24221 122345677888888766533 466777777777655555666655543
Q ss_pred -CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEc---CC-------------
Q 040690 69 -DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIH---PQ------------- 130 (285)
Q Consensus 69 -~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIH---pq------------- 130 (285)
.+..... + ...+.|..-+. -..+.|++-|--.|. ++||||-++.++..... |+
T Consensus 185 ~~~~~~~~----~---~~~~~w~~~~~--~gGG~l~d~g~H~lDl~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~~g~ 255 (438)
T 3btv_A 185 GGWYGYER----P---VKSPKYIYEIG--NGVDLVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDERGNRLGQ 255 (438)
T ss_dssp CSSSSSEE----E---TTSCGGGGSTT--SSCSTTTTHHHHHHHHHHHHHTCCEEEEEEEEECCCSEEEEECTTSCEEEE
T ss_pred cCcccccc----c---CCccccccccc--cCCCeeeeeeeeHHHHHHHHhCCCceEEEEEeeccCCcccccccccccccc
Confidence 2111100 0 12456764332 223568888866666 57999977778877764 22
Q ss_pred -------cceeeeEEeecccEEEe
Q 040690 131 -------SILHSMIETQDSSVIGQ 147 (285)
Q Consensus 131 -------SivHs~V~f~DGs~~a~ 147 (285)
-.++.+++|.+|...+.
T Consensus 256 ~~~~~~~D~~~~~l~~~~G~~~~~ 279 (438)
T 3btv_A 256 RVPKTVPDHLLFQGTLLNGNVPVS 279 (438)
T ss_dssp EEECCSCSEEEEEEEETTTTEEEE
T ss_pred ccCCCCCceEEEEEEECCCcEEEE
Confidence 24567889999933333
No 40
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=31.75 E-value=2.6e+02 Score=24.42 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=72.7
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEeccCCC--h
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTASDWP--V 72 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS~~~--~ 72 (285)
+.+|+++||.|.. .|=.- +..+.-+.+.++++|..+.. -+..+..+-+++.. .+|..+..+-+.+. .
T Consensus 79 ~~~al~~gk~V~~-EKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~---G~i~~v~~~~~~~~~~~ 154 (325)
T 2ho3_A 79 AKAALSAGKHVIL-EKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD---XQVLGADFNYAKYSSKM 154 (325)
T ss_dssp HHHHHHTTCEEEE-ESSCCSSHHHHHHHHHHHHHTTCCEEEECTTTTCHHHHHHHHHHTT---SCEEEEEEEEECCCCC-
T ss_pred HHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHcCCEEEEEEhhhcChHHHHHHHHhhh---cCccEEEEEeccccccc
Confidence 3578999998765 45322 22345577888888876653 35566667777764 34665544433211 1
Q ss_pred hhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC-----CcceeeeEEeecccEEE
Q 040690 73 EKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP-----QSILHSMIETQDSSVIG 146 (285)
Q Consensus 73 ~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp-----qSivHs~V~f~DGs~~a 146 (285)
+....- .+.|..-++ -..+.|++-|.-.|- +.||||- ++++.+.... ....+.+++|.||.+..
T Consensus 155 ~~~~~~-------~~~~~~~~~--~~gG~l~d~g~H~ld~~~~l~G~-~~~v~a~~~~~~~~~~d~~~~~l~~~~g~~~~ 224 (325)
T 2ho3_A 155 PDLLAG-------QTPNVFSDR--FAGGALMDLGIYPLYAAVRLFGK-ANDATYHAQQLDNSIDLNGDGILFYPDYQVHI 224 (325)
T ss_dssp --------------------------CCHHHHTTHHHHHHHHHHHCS-CSEEEEEEEECTTSCEEEEEEEEECSSCEEEE
T ss_pred cccccC-------cccccCCcC--CCCcchhhhHHHHHHHHHHHcCC-CcEEEEEEeecCCCccceEEEEEEeCCcEEEE
Confidence 111000 012222122 234578888877666 7899994 5777766532 12456777888886554
Q ss_pred ecC
Q 040690 147 QLG 149 (285)
Q Consensus 147 ~~~ 149 (285)
..+
T Consensus 225 ~~~ 227 (325)
T 2ho3_A 225 KAG 227 (325)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 41
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=30.82 E-value=1.7e+02 Score=25.58 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHHHcCCceeeecccchh--cccccchHHHhhcCCeEee-CCchhhHHHHHhcCC--CCCccceEEEeccCCChhhhhc
Q 040690 3 VAAIEAGKDIALANKETMI--AGGPFILPLAHKHNIKFLP-ADSEHSAVFQCIQGL--PEGALWRIILTASDWPVEKMKE 77 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV--~aG~li~~~~~~~~~~i~P-vDSEHsAifQ~L~~~--~~~~v~~iilTAS~~~~~~l~~ 77 (285)
..|+++||.|. ..|=.-. ..+.-+.+.+++.|..+.. --.-++..||-+... ...+|..+-...
T Consensus 87 ~~al~~Gk~v~-~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~lG~i~~v~~~~---------- 155 (315)
T 3c1a_A 87 LAAIASGKAVL-VEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLTSIGPILAVRSEA---------- 155 (315)
T ss_dssp HHHHHTTCEEE-EESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHHHHCSEEEEEEEE----------
T ss_pred HHHHHCCCcEE-EcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHHHcCCeEEEEEEE----------
Confidence 56899998876 3553322 2345567788888876543 222333344433311 111233333221
Q ss_pred CCHHHHhcCCCCCCCcccccc-hhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC--------CcceeeeEEeecccE
Q 040690 78 ITVADALKHPIWTLGKKITID-SATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP--------QSILHSMIETQDSSV 144 (285)
Q Consensus 78 vt~~~Al~HP~W~MG~KITID-SATm~NKglEvIE-A~~LF~~~~~~I~vvIHp--------qSivHs~V~f~DGs~ 144 (285)
...+.| .-+ .+.|++-|.-.|. ++||||-++.++...... .-..+.+++| ||.+
T Consensus 156 ------~~~~~~------~~~ggG~l~d~g~H~id~~~~l~G~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~-~g~~ 219 (315)
T 3c1a_A 156 ------GNHGPY------RPGGVPMLWDWGAHDVSMVLDLMGRDPDSTSASWAARGEKDGGEAGDVTLTLAF-STVE 219 (315)
T ss_dssp ------EEECCC------CTTCCCHHHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEETTEEEEEEEEEEEE-TTEE
T ss_pred ------ecCCCc------cccCCcchhhhhchHHHHHHHHhCCCCcEEEEEeEeecCCCCCCCceEEEEEEE-CCEE
Confidence 011235 122 3678888877776 589999767888776542 2356778899 8754
No 42
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=28.97 E-value=26 Score=34.48 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEe
Q 040690 111 EAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQ 147 (285)
Q Consensus 111 EA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~ 147 (285)
+|..++++|.+ +.+..-|=+.|||.|||++=.
T Consensus 472 ~a~~~~~~p~~-----~~~~~~~~~~~~~rd~~~~d~ 503 (509)
T 1xr4_A 472 RAEQLTGKPQP-----IEFTDRVVAVVRYRDGSVIDV 503 (509)
T ss_dssp HHHHHHCCCCC-----CCEEEEEEEEEECTTSCEEEE
T ss_pred HHHHhhCCCcc-----CCCCCeEEEEEEecCCcEEEE
Confidence 35778888654 666777889999999999743
No 43
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=28.55 E-value=3e+02 Score=26.15 Aligned_cols=131 Identities=10% Similarity=0.103 Sum_probs=78.3
Q ss_pred hHHHHHcC------Cceeeecccch--hcccccchHHHhhcC-CeEee-----CCchhhHHHHHhcCCCCCccceEEEec
Q 040690 2 TVAAIEAG------KDIALANKETM--IAGGPFILPLAHKHN-IKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTA 67 (285)
Q Consensus 2 t~~al~~g------k~iaLANKEsl--V~aG~li~~~~~~~~-~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTA 67 (285)
+.+|+++| |.|.+ .|=.- +.-..-+.+.++++| ..+.. -+..+..+-+++.....-+|..+-.+.
T Consensus 125 ~~~al~aG~~~~~~khVl~-EKPla~~~~ea~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~ 203 (479)
T 2nvw_A 125 VKNILEHSSQNLNLRYLYV-EWALAASVQQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELISEGCIGDINSIEISG 203 (479)
T ss_dssp HHHHHHHSSSCSSCCEEEE-ESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHHHTTTTCSEEEEEEEE
T ss_pred HHHHHHCCCCcCCceeEEE-eCCCcCCHHHHHHHHHHHHHcCCeEEEEEeccccCHHHHHHHHHHHcCCCCCeEEEEEEe
Confidence 45789999 87765 56322 222355677888888 65432 255566667777655544566655543
Q ss_pred c-CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcC----------------
Q 040690 68 S-DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHP---------------- 129 (285)
Q Consensus 68 S-~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHp---------------- 129 (285)
+ .+..... + ..+++|..-+. -..+.|++-|.=.|. ++||||-++.++.+....
T Consensus 204 ~~~~~~~~~----~---~~~~~w~~~~~--~gGG~l~d~g~H~lDl~~~l~G~~p~~V~a~~~~~~~~~~~~~~~g~~~g 274 (479)
T 2nvw_A 204 NGGWYGYER----P---MRSPEYLYDIE--SGVNLISNSFGHTIDVLQYITGSYFQKINAMISNNIPTQFLLDENGKRTK 274 (479)
T ss_dssp ECSBSSSEE----E---TTCCGGGGCGG--GSCSTTTTHHHHHHHHHHHHHTCCEEEEEEEEECCCSEEEEEC--CCCCS
T ss_pred cCCccCCcc----c---ccccccccCcc--cCccHHHHHHHHHHHHHHHHHCCCCCEEEEEEEeccCccccccccccccc
Confidence 3 2211100 0 12456764332 224568888877666 579999777787777642
Q ss_pred -------CcceeeeEEeecc
Q 040690 130 -------QSILHSMIETQDS 142 (285)
Q Consensus 130 -------qSivHs~V~f~DG 142 (285)
.-.+..+++|.||
T Consensus 275 ~~~~~~~~D~~~~~l~f~~G 294 (479)
T 2nvw_A 275 ETISKTCPDHLLFQGILENG 294 (479)
T ss_dssp CEEECCSCCEEEEEEEESGG
T ss_pred ccccCCcCeEEEEEEEECCC
Confidence 1235677899999
No 44
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=28.54 E-value=24 Score=32.64 Aligned_cols=84 Identities=29% Similarity=0.345 Sum_probs=53.2
Q ss_pred HHHHHcCCceeeecccchhcccccchHHHhhcCCeE-------eeCCchhhHHHHHhcCCCCCccceE--EEecc-CCCh
Q 040690 3 VAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKF-------LPADSEHSAVFQCIQGLPEGALWRI--ILTAS-DWPV 72 (285)
Q Consensus 3 ~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i-------~PvDSEHsAifQ~L~~~~~~~v~~i--ilTAS-~~~~ 72 (285)
.+|+++||-|..+||.-+..-|.-+.+.|++++... +|+ ...+- +|.+. .|.+| |+.++ ++-+
T Consensus 85 ~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~~~~~Ea~vg~giPi---i~~l~-~l~~~---~I~~I~gI~nGT~nyil 157 (332)
T 2ejw_A 85 LPALEAGIPLITANKALLAEAWESLRPFAEEGLIYHEASVMAGTPA---LSFLE-TLRGS---ELLELHGILNGTTLYIL 157 (332)
T ss_dssp HHHHHTTCCEEECCHHHHHHSHHHHHHHHHTTCEECGGGTTTTSSS---HHHHH-HHTTS---EEEEEEEECCHHHHHHH
T ss_pred HHHHHcCCeEEECCchhHHHHHHHHHHHHHhCCeEEEEEcccCCHH---HHHHH-HhcCC---CcceEEEEEeccccccc
Confidence 469999999999999998888888999998772111 131 22333 44443 46655 34444 3333
Q ss_pred hhh-hcCCHHHHhc----------CCCCCCCc
Q 040690 73 EKM-KEITVADALK----------HPIWTLGK 93 (285)
Q Consensus 73 ~~l-~~vt~~~Al~----------HP~W~MG~ 93 (285)
.+| ...+++++|+ -|++.++.
T Consensus 158 ~~m~~g~~f~~~l~eAq~~GyaE~dP~~Dv~G 189 (332)
T 2ejw_A 158 QEMEKGRTYAEALLEAQRLGYAEADPTLDVEG 189 (332)
T ss_dssp HHHHTTCCHHHHHHHHHHTTSSCSSCHHHHTT
T ss_pred CccccCCCHHHHHHHHHHCCCCCCCCccccCc
Confidence 333 5677777776 77766553
No 45
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=28.19 E-value=14 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCCCccHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 040690 230 KISYLDIFKVVELTCDKHRADLVSSPSLEDILHY 263 (285)
Q Consensus 230 kI~F~dI~~vV~~~Le~~~~~~~~~~sLedIl~i 263 (285)
+-.|+.+.++|...=.+|......|-||+||++-
T Consensus 7 ~~~f~~lakiV~~mK~rh~~g~~~PltL~EILde 40 (81)
T 1d8j_A 7 GYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDE 40 (81)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTCCSCBCHHHHHHH
T ss_pred ccceehHHHHHHHHHHhhccCCCCCccHHHHHHH
Confidence 4478999999988777664322357899999876
No 46
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.72 E-value=34 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=30.8
Q ss_pred chhcccccchHHHhhcCCeEeeCCchhhHHHHHhc
Q 040690 19 TMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQ 53 (285)
Q Consensus 19 slV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~ 53 (285)
.+|.||.+..+.|++.|.+-+.+.| -.+|.|.|.
T Consensus 156 ~vVVG~~~~~~~A~~~Gl~~vlI~s-~eSI~~Ai~ 189 (225)
T 2pju_A 156 EAVVGAGLITDLAEEAGMTGIFIYS-AATVRQAFS 189 (225)
T ss_dssp CEEEESHHHHHHHHHTTSEEEESSC-HHHHHHHHH
T ss_pred CEEECCHHHHHHHHHcCCcEEEECC-HHHHHHHHH
Confidence 4588999999999999999999999 499999987
No 47
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=27.26 E-value=1.5e+02 Score=27.72 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=78.2
Q ss_pred hHHHHHcCCceeeecccchh--cccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETMI--AGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEslV--~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+..|+++||.|.+ -|=.-+ .-+.-+.+.++++|..+.- -+..+..+-+++......+|..+-..-+ .....
T Consensus 167 ~~~al~aGk~Vl~-EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~~~~~~~~ 245 (433)
T 1h6d_A 167 AIRAFKAGKHVMC-EKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQN 245 (433)
T ss_dssp HHHHHHTTCEEEE-CSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHTTSSCSEEEEEEEEECCCCTT
T ss_pred HHHHHHCCCcEEE-cCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHHcCCCCCcEEEEEEEecccccC
Confidence 3578999998765 452222 2334567788888876653 2556667777777555455665554433 22100
Q ss_pred hhhcCCHHHHhcCCC-CCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEc-C---------CcceeeeEEeec
Q 040690 74 KMKEITVADALKHPI-WTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIH-P---------QSILHSMIETQD 141 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~-W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIH-p---------qSivHs~V~f~D 141 (285)
.+. . |..-+... ..+.|++-|.-.|- ++||||-++.++...+. + .-..+.+++|.|
T Consensus 246 -----~~~------~~wr~~~~~~-gGG~l~d~g~H~lD~~~~l~G~~p~~V~a~~~~~~~~~~~~~veD~~~~~l~f~~ 313 (433)
T 1h6d_A 246 -----DPA------QQWRLRRELA-GGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRS 313 (433)
T ss_dssp -----SHH------HHGGGCHHHH-SSSHHHHTHHHHHHHHHHHHTSCEEEEEEEEECCTTCGGGSSSCSEEEEEEEETT
T ss_pred -----CCC------cccccccccC-CCCceecccchHHHHHHHHcCCCCEEEEEEecccCCCccccccCceEEEEEEECC
Confidence 111 2 75321110 23567888777666 58999987778887732 1 124778899999
Q ss_pred ccEE
Q 040690 142 SSVI 145 (285)
Q Consensus 142 Gs~~ 145 (285)
|.+.
T Consensus 314 G~~~ 317 (433)
T 1h6d_A 314 GALS 317 (433)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 8643
No 48
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=22.57 E-value=2.9e+02 Score=24.61 Aligned_cols=130 Identities=13% Similarity=0.073 Sum_probs=70.4
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-C----CchhhHHHHHhcCC-CCCccceEEEecc-CCCh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-A----DSEHSAVFQCIQGL-PEGALWRIILTAS-DWPV 72 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-v----DSEHsAifQ~L~~~-~~~~v~~iilTAS-~~~~ 72 (285)
+..|+++||.|.+ .|=.- +..+.-+.+.++++|..+.- . +..+..+-+.+... ..-+|..+-.+-+ ..+.
T Consensus 88 ~~~al~aGk~V~~-EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~~iG~i~~v~~~~~~~~~~ 166 (362)
T 1ydw_A 88 AIKAAEKGKHILL-EKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDE 166 (362)
T ss_dssp HHHHHTTTCEEEE-CSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGSGGGTTTTTGGGCTTTTCSEEEEEEEEEEECCH
T ss_pred HHHHHHCCCeEEE-ecCCcCCHHHHHHHHHHHHHcCCEEEEEEeeccCHHHHHHHHHHHhcCCccceEEEEEEEEecCCc
Confidence 3578999998775 66222 22345667888888876651 1 23333444445432 2334555444333 2221
Q ss_pred hhhhcCCHHHHhcCCCCCCCcccccc-hhhhhhhhHHHHH-HhhhhCC-CCCceeEEEc----CC---cceeeeEEeecc
Q 040690 73 EKMKEITVADALKHPIWTLGKKITID-SATLFNKGLEVIE-AHYLFGA-GYDNIEIVIH----PQ---SILHSMIETQDS 142 (285)
Q Consensus 73 ~~l~~vt~~~Al~HP~W~MG~KITID-SATm~NKglEvIE-A~~LF~~-~~~~I~vvIH----pq---SivHs~V~f~DG 142 (285)
+-. . ..|...+. .+ .+.|++-|.=.|. +.||||. .++++..... +. -..+.+++|.||
T Consensus 167 ~~~---------~-~~wr~~~~--~~ggG~l~d~g~H~id~~~~l~g~~~p~~V~a~~~~~~~~~~~~d~~~~~l~~~~G 234 (362)
T 1ydw_A 167 DFL---------K-NDIRVKPG--LDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDG 234 (362)
T ss_dssp HHH---------H-HCGGGCTT--SSTTHHHHHTHHHHHHHHHHHTTTCCCSEEEECSCCEECTTSCEEEEEEEEECSSS
T ss_pred ccc---------c-CCcccCcc--cCCCceeecccHHHHHHHHHhcCCCCCeEEEEeccccccCCCCceEEEEEEEECCC
Confidence 111 0 13543222 22 3678887776664 5789986 4677766432 11 235678889998
Q ss_pred cE
Q 040690 143 SV 144 (285)
Q Consensus 143 s~ 144 (285)
.+
T Consensus 235 ~~ 236 (362)
T 1ydw_A 235 RT 236 (362)
T ss_dssp CE
T ss_pred CE
Confidence 63
No 49
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=21.59 E-value=56 Score=29.25 Aligned_cols=133 Identities=12% Similarity=0.079 Sum_probs=81.0
Q ss_pred hHHHHHcCCceeeecccch--hcccccchHHHhhcCCeEee-----CCchhhHHHHHhcCCCCCccceEEEecc-CCChh
Q 040690 2 TVAAIEAGKDIALANKETM--IAGGPFILPLAHKHNIKFLP-----ADSEHSAVFQCIQGLPEGALWRIILTAS-DWPVE 73 (285)
Q Consensus 2 t~~al~~gk~iaLANKEsl--V~aG~li~~~~~~~~~~i~P-----vDSEHsAifQ~L~~~~~~~v~~iilTAS-~~~~~ 73 (285)
+.+|+++||.|..= |=.- +.-..-+.+.++++|..+.. -+.....+-+.+......+|..+-.+-. ..+..
T Consensus 90 ~~~al~aGkhVl~E-KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~~~~~~~~~~ 168 (318)
T 3oa2_A 90 IAAGLRLGCDVICE-KPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAREKSPHKYEVDLTYITSRGNW 168 (318)
T ss_dssp HHHHHHTTCEEEEC-SSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHS-CSSCEEEEEEEEECCCHH
T ss_pred HHHHHHCCCeEEEE-CCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHhcCCCCceEEEEEEEEecCCCC
Confidence 46789999887542 2211 12244566788888876532 2344445555555443344555544433 22211
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecC
Q 040690 74 KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIE-AHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLG 149 (285)
Q Consensus 74 ~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIE-A~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~ 149 (285)
...+|..-+.- ..+.|+|-|-=.|. +.||||-| .++.+-+..+-..+++++|.+|.+..++|
T Consensus 169 -----------~~~~w~~~~~~--~gG~l~d~g~H~id~~~~l~G~~-~~v~~~~~~~d~~~~~l~~~~g~~~~~~s 231 (318)
T 3oa2_A 169 -----------YLKSWKGDPRK--SFGVATNIGVHFYDMLHFIFGKL-QRNVVHFTSEYKTAGYLEYEQARVRWFLS 231 (318)
T ss_dssp -----------HHHSGGGCHHH--HCCHHHHHHHHHHHHHHHHHCSE-EEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred -----------CCcccccCCCc--CCCccccCCcHHHHHHHHHhCCC-ceEEEEecCCcEEEEEEEeCCCeEEEEEE
Confidence 01356543222 35788888776665 57899965 56778888889999999999998877665
Done!