BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040691
         (585 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
           GN=MTERFD1 PE=2 SV=1
          Length = 405

 Score = 41.2 bits (95), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 471 VEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTV 530
           VE G ER +V  +    P IL   K+ L+   DY  N  G P + L  FPQ     +  +
Sbjct: 291 VEFGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRI 350

Query: 531 KCRLSMYNWLKDRKLVEPT----LALSTIITCSDKLFVT 565
           K R  M+     R   +PT    ++L  +++  D++F T
Sbjct: 351 KER-HMFLIFLGRAQYDPTKPSYISLDQLVSLPDEVFCT 388


>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
           GN=MTERF PE=1 SV=1
          Length = 399

 Score = 36.2 bits (82), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 28/147 (19%)

Query: 178 LCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLS------QSFVRKVIVRNP 231
           L + G  RK +  +   A   F     + +  ++  +  GLS        FVRK+I +NP
Sbjct: 183 LYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNP 242

Query: 232 KFLVGD-----VNLEFIK---------VLEILKSMGIEFSWIGEHSTEQSTFNWR-TMFS 276
             L+        N+EF++         +L ++   G E   +      +S  N +  +FS
Sbjct: 243 FILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS 302

Query: 277 FLSFCSKIGCSEEQLRILIRQHPEILF 303
                  +GC+EE+++  +  +P+++F
Sbjct: 303 -------LGCTEEEVQKFVLSYPDVIF 322


>sp|A8MWK0|FS2P1_HUMAN Putative fatty acid desaturase 2-like protein FADS2P1 OS=Homo
           sapiens GN=FADS2P1 PE=5 SV=2
          Length = 482

 Score = 34.7 bits (78), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 529 TVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLF-VTRYVNRHPGGHQV 577
           T +  LSMY WL+ ++       L  +I C  K++ V+ + +RHPGGHQV
Sbjct: 51  TPRKSLSMYTWLEIQRHNHEADQL--VINC--KVYNVSSWADRHPGGHQV 96


>sp|Q44603|TRPC_BUCSC Tryptophan biosynthesis protein TrpCF OS=Buchnera aphidicola subsp.
           Schlechtendalia chinensis GN=trpC PE=3 SV=1
          Length = 461

 Score = 34.3 bits (77), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 528 KTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPG 573
           K VK ++   NW+K RK ++P  +    IT SD+ F+    N HP 
Sbjct: 9   KIVKSKI---NWIKHRKKIQPLSSFQHNITLSDRNFIQALKNIHPA 51


>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
           GN=Mterf PE=2 SV=1
          Length = 379

 Score = 34.3 bits (77), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 26/146 (17%)

Query: 178 LCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLS------QSFVRKVIVRNP 231
           LC+ G   K +  +   A   F     + +  ++  ++ G+S      + FVRK+I +NP
Sbjct: 165 LCSVGLTHKCLCRLLTNAPRTFSNSLNLNKQMVEFLQETGMSLGHNDPRDFVRKIISKNP 224

Query: 232 KFLVGD-----VNLEFIK---------VLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSF 277
             L+        N+EF++         +L ++   G     +    T+++  N R     
Sbjct: 225 SILIQSTKRVKTNIEFLQSTFNLNKRDLLLLICGPGARILDLSNDCTKKNYTNIRERLLS 284

Query: 278 LSFCSKIGCSEEQLRILIRQHPEILF 303
           L      GCSEE+++  +  +  ++F
Sbjct: 285 L------GCSEEEVQRFVLSYLNMVF 304


>sp|Q32RG2|RPOC2_ZYGCR DNA-directed RNA polymerase subunit beta'' OS=Zygnema circumcarinatum
            GN=rpoC2 PE=3 SV=1
          Length = 1095

 Score = 33.5 bits (75), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 435  EFLLEVGFEENSKQF-ETALKDLRTRARDLRER--FDLIVEAGLERKDVCDMVRVAPLIL 491
             F+ E  F++ ++   ++A+K+     R L+E   F  ++ AG   +++   ++   +  
Sbjct: 972  SFISEASFQQTARVLSKSAIKNRVDWIRGLQENVLFGRMIPAGTGCREISSQLQYGNIF- 1030

Query: 492  KQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKT 529
             QKK    TK   FVN FG  +S L+ +  +  Y +++
Sbjct: 1031 -QKKWAQHTKWKLFVNSFGLNLSCLQIYLHFQAYCLES 1067


>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
           GN=MTERFD1 PE=1 SV=2
          Length = 417

 Score = 32.7 bits (73), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 20/115 (17%)

Query: 436 FLLEVGFEENS---------KQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRV 486
           FL +VG E+N            F   L++L+TR   L  +          + DV  MVR 
Sbjct: 194 FLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSK-------NFSKADVAQMVRK 246

Query: 487 APLILKQKKEVLKTKIDYFVNDFGYPISSLKP----FPQYLMYNMKTVKCRLSMY 537
           AP +L    E L  ++ +F  +    +   +      P+ L  +++ VK  + +Y
Sbjct: 247 APFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVY 301


>sp|P55131|RTX32_ACTPL RTX-III toxin determinant A from serotype 8 OS=Actinobacillus
           pleuropneumoniae GN=apxIIIA PE=3 SV=1
          Length = 1052

 Score = 32.7 bits (73), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 203 FGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEH 262
           +GV ++KLQA       Q +  K+++  PK   G V   F  +++  + +GI+  ++  +
Sbjct: 35  YGVSQAKLQALAAGKAVQKYGNKLVLVIPKEYDGSVGNGFFDLVKAAEELGIQVKYVNRN 94

Query: 263 STEQSTFNWRTMFSFLSFCSKIGCS--EEQLRILIRQHPEI 301
             E +  +  T   FL    + G +    QL   +++H +I
Sbjct: 95  ELEVAHKSLGTADQFLGLTER-GLTLFAPQLDQFLQKHSKI 134


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,340,578
Number of Sequences: 539616
Number of extensions: 8880887
Number of successful extensions: 28209
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 28188
Number of HSP's gapped (non-prelim): 33
length of query: 585
length of database: 191,569,459
effective HSP length: 123
effective length of query: 462
effective length of database: 125,196,691
effective search space: 57840871242
effective search space used: 57840871242
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.3 bits)