Query 040691
Match_columns 585
No_of_seqs 302 out of 1220
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 17:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 64.3 2.5 0.00018 27.7 2.9 26 462-487 3-28 (41)
2 d1oqya1 a.5.2.1 (A:160-200) DN 45.2 4.5 0.00033 26.3 1.7 17 429-445 3-19 (41)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 32.5 24 0.0017 27.6 4.7 101 242-367 13-113 (114)
4 d1vg5a_ a.5.2.1 (A:) Rhomboid 29.8 29 0.0021 25.2 4.3 14 431-444 30-43 (73)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 28.1 34 0.0025 24.8 4.4 35 466-507 32-66 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 26.2 27 0.0019 24.5 3.4 36 466-508 12-47 (63)
7 d1wgna_ a.5.2.1 (A:) Ubiquitin 25.9 24 0.0017 24.9 3.1 20 466-485 22-41 (63)
8 d2g3qa1 a.5.2.1 (A:1339-1381) 25.8 22 0.0016 23.0 2.5 21 467-487 8-28 (43)
9 d1vg5a_ a.5.2.1 (A:) Rhomboid 24.9 23 0.0017 25.7 2.9 40 464-510 30-69 (73)
10 d2hsga1 a.35.1.5 (A:2-58) Gluc 24.5 61 0.0045 22.1 5.1 47 214-264 9-55 (57)
11 d2prra1 a.152.1.3 (A:5-194) Un 24.0 40 0.0029 28.5 5.1 43 464-515 138-180 (190)
12 d2daha1 a.5.2.1 (A:8-48) Ubiqu 23.7 56 0.0041 20.8 4.3 37 431-471 3-39 (41)
13 d1wiva_ a.5.2.1 (A:) Ubiquitin 23.2 36 0.0026 24.6 3.7 36 431-471 30-65 (73)
14 d1wgna_ a.5.2.1 (A:) Ubiquitin 22.1 24 0.0017 24.9 2.4 37 431-486 20-56 (63)
15 d2pfxa1 a.152.1.3 (A:1-190) Un 20.8 1.7E+02 0.013 24.2 8.8 137 305-484 17-161 (190)
16 d2crna1 a.5.2.1 (A:8-58) Suppr 20.8 36 0.0026 22.8 3.0 32 435-471 7-39 (51)
17 d1cuka1 a.5.1.1 (A:156-203) DN 20.8 38 0.0028 22.4 3.1 28 204-231 3-30 (48)
18 d1qpza1 a.35.1.5 (A:2-58) Puri 20.0 40 0.0029 23.2 3.2 45 215-263 9-53 (57)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.29 E-value=2.5 Score=27.72 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhc
Q 040691 462 DLRERFDLIVEAGLERKDVCDMVRVA 487 (585)
Q Consensus 462 ~l~~rv~fL~~~G~s~~~v~~mI~~~ 487 (585)
+.++.++-|+++||+++++.+.++++
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555666666667666666666544
No 2
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.20 E-value=4.5 Score=26.34 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHhCCCcc
Q 040691 429 SDTLKAEFLLEVGFEEN 445 (585)
Q Consensus 429 ~~~~k~~fL~~lG~~e~ 445 (585)
.+.+++.-|.+|||++.
T Consensus 3 ~~e~~i~~L~~MGF~~~ 19 (41)
T d1oqya1 3 EYETMLTEIMSMGYERE 19 (41)
T ss_dssp THHHHHHHHHTTTCCSH
T ss_pred hHHHHHHHHHHcCCCHH
Confidence 35678899999999985
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.50 E-value=24 Score=27.63 Aligned_cols=101 Identities=9% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCCcchhhhhhhcccccchhhhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcC
Q 040691 242 FIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFG 321 (585)
Q Consensus 242 l~p~v~~L~~lGl~~~~i~~~l~~~p~~~~~~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG 321 (585)
-+..++||++-|++...+- + .+-+++.+++..++...+.=-..+...+....+..-....
T Consensus 13 srka~~~L~~~~i~~~~id-------------------y-~k~pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ 72 (114)
T d1rw1a_ 13 MKKARTWLDEHKVAYDFHD-------------------Y-KAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKAD 72 (114)
T ss_dssp HHHHHHHHHHTTCCEEEEE-------------------H-HHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHcCCCeEEEE-------------------c-cccCCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhcc
Confidence 5567788888777765421 1 2236677777777766541000111112222222222345
Q ss_pred CChhHHHHHHhhCCceeecccccchhHHHHHHHhhhhchHHHHHHH
Q 040691 322 TSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIV 367 (585)
Q Consensus 322 ~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il 367 (585)
++.+++..++..+|.++-+.+--. ..+ .-+|++++++..++
T Consensus 73 ls~~e~i~~i~~~P~LikRPIv~~-~~~----~~iG~~~e~~~~~l 113 (114)
T d1rw1a_ 73 LDEAKAIELMLAQPSMIKRPVLEL-GGR----TLVGFKPDAYAAAL 113 (114)
T ss_dssp CCHHHHHHHHHHCGGGBCSCEEEC-SSC----EEESCCHHHHHHHH
T ss_pred ccHHHHHHHHHhCcceEeCCEEEE-CCE----EEECCCHHHHHHHh
Confidence 788888899999998887665311 111 12677777776654
No 4
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.84 E-value=29 Score=25.16 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=8.2
Q ss_pred HHHHHHHHHhCCCc
Q 040691 431 TLKAEFLLEVGFEE 444 (585)
Q Consensus 431 ~~k~~fL~~lG~~e 444 (585)
.+.+.-|.+|||++
T Consensus 30 ee~i~~L~~MGF~~ 43 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDR 43 (73)
T ss_dssp HHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhCCCH
Confidence 45556666666654
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.09 E-value=34 Score=24.77 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHH
Q 040691 466 RFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVN 507 (585)
Q Consensus 466 rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~ 507 (585)
.+.-|+++||+++++.+.++.+- ..++.-++||.+
T Consensus 32 ~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls 66 (73)
T d1wiva_ 32 SVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHc
Confidence 34455566666666665555441 134555555554
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.19 E-value=27 Score=24.54 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 040691 466 RFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVND 508 (585)
Q Consensus 466 rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~ 508 (585)
.++-|+++||+++.+.+.+..+- ..++.-++||.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 12 ALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 34455566666666666655441 1455666666664
No 7
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.90 E-value=24 Score=24.89 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=8.9
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 040691 466 RFDLIVEAGLERKDVCDMVR 485 (585)
Q Consensus 466 rv~fL~~~G~s~~~v~~mI~ 485 (585)
.|+-|+++||+++++.+.++
T Consensus 22 ~v~~L~~MGF~~~~a~~AL~ 41 (63)
T d1wgna_ 22 CVETVVNMGYSYECVLRAMK 41 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 34444444444444444444
No 8
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=25.82 E-value=22 Score=23.02 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHcCCCHHHHHHHHHhc
Q 040691 467 FDLIVEAGLERKDVCDMVRVA 487 (585)
Q Consensus 467 v~fL~~~G~s~~~v~~mI~~~ 487 (585)
++-|.++||+.++..+.+.++
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHc
Confidence 344556777777776666654
No 9
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.93 E-value=23 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcC
Q 040691 464 RERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFG 510 (585)
Q Consensus 464 ~~rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg 510 (585)
++.++-|+++||+++++.+.++.+- .+++.-++||.+..|
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Ll~~~~ 69 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQSG 69 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-------CCHHHHHHHHHhCCC
Confidence 5677789999999999988887643 257778888887543
No 10
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=24.45 E-value=61 Score=22.08 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=32.8
Q ss_pred HhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcchhhhhhh
Q 040691 214 EKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHST 264 (585)
Q Consensus 214 ~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~~i~~~l~ 264 (585)
+..|+|...+.+++...|.+ +. +.-+.+.+..+++|..++..++.|.
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~-~tr~rV~~aa~~lgY~pn~~A~~L~ 55 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KP-STRKKVLETIERLGYRPNAVARGLA 55 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CH-HHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred HHHCcCHHHHHHHhCCCCcC---CH-HHHHHHHHHHHHHCcCCCHHHHHhc
Confidence 35799999999999988864 32 2344455666788888887766543
No 11
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=24.00 E-value=40 Score=28.45 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcCCCccc
Q 040691 464 RERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISS 515 (585)
Q Consensus 464 ~~rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~ 515 (585)
.+-++-|++.||+.++|.+++... .+-.=++.+.+.+|.+.++
T Consensus 138 d~~~~~L~~~g~s~~eivel~~~v---------a~~~~~nr~~~~l~i~~d~ 180 (190)
T d2prra1 138 EADFEALREHGFTDEDAWDIAAIT---------AFFGLSNRMANTIGMRPND 180 (190)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH---------HHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCCh
Confidence 455677789999999998887722 2334456667778888764
No 12
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.66 E-value=56 Score=20.84 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH
Q 040691 431 TLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV 471 (585)
Q Consensus 431 ~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~ 471 (585)
...+..|++|||...... .+|+..-.| .+..-++.|.
T Consensus 3 ~~QL~~L~~MGF~d~~~N-i~AL~~t~G---dv~~Aie~Ll 39 (41)
T d2daha1 3 QVQLEQLRSMGFLNREAN-LQALIATGG---DVDAAVEKLR 39 (41)
T ss_dssp HHHHHHHHHHTCCCHHHH-HHHHHHHTS---CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHH-HHHHHHcCC---CHHHHHHHHH
Confidence 456788899999875332 244433222 4555555554
No 13
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.18 E-value=36 Score=24.63 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH
Q 040691 431 TLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV 471 (585)
Q Consensus 431 ~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~ 471 (585)
.+++.-|.+|||++. +|...+...+.++..-++||.
T Consensus 30 ~~~i~~L~~MGF~~~-----~a~~AL~~~~~n~e~Av~~Ll 65 (73)
T d1wiva_ 30 QSSVDTLLSFGFAED-----VARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHHHTCCHH-----HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH-----HHHHHHHHcCCCHHHHHHHHH
Confidence 577888999999874 333333333346777777776
No 14
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.12 E-value=24 Score=24.88 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 040691 431 TLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRV 486 (585)
Q Consensus 431 ~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~~~G~s~~~v~~mI~~ 486 (585)
.+.++-|.+|||++.. -.+-|+..|.+.+.....+-.
T Consensus 20 e~~v~~L~~MGF~~~~-------------------a~~AL~~~~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYEC-------------------VLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHH-------------------HHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHH-------------------HHHHHHHcCCCHHHHHHHHHh
Confidence 6788999999998741 122344567777666555543
No 15
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=20.82 E-value=1.7e+02 Score=24.19 Aligned_cols=137 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred CccccHHHHHHHHHh-cCCChhHHHHHHhhCCceeecccccchhHHHHHHHhh--h---hchHHHHHHHHhCCcccccC-
Q 040691 305 DSGNMALSLVGFLLK-FGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEI--E---MEAKEIGNIVRTHPVLLGTC- 377 (585)
Q Consensus 305 ~~e~~L~p~v~fL~~-lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~~l--G---~~~~~I~~il~~~P~iL~~~- 377 (585)
.....+++.++..++ +|.-+ ++.+++...|.+ +...+.+...+ + ++.....-+..+..++-+|.
T Consensus 17 ~~p~~~~~~~~~~~~~~G~vp-N~~~~la~~P~~--------l~a~~~~~~~~~~~~~~L~~~~rEli~l~vS~~n~C~Y 87 (190)
T d2pfxa1 17 PLPDETQKYFEICQEKLGMVP-NVLKAYAFNVEK--------LNAFTAMYNDLMLGESQLSKLEREMIAVVVSSINKCFY 87 (190)
T ss_dssp SCCHHHHHHHHHHHHHHSSCC-HHHHHHTTSHHH--------HHHHHHHHHHHHHSSCSSCHHHHHHHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHHHHhCCCc-HHHHHHHcCHHH--------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhCCcH
Q ss_pred cccchHHHHHHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHHHHHh
Q 040691 378 ALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLR 457 (585)
Q Consensus 378 ~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al~~~~ 457 (585)
.+.-....++.+|.+.+.+..+......-. |++......+.-..+.
T Consensus 88 C~~~H~~~~~~~g~~~~~~~~i~~~~~~~~----------------------------------~~~~e~all~~a~~l~ 133 (190)
T d2pfxa1 88 CLVAHGAAVRQLSGDPQLGEMLVMNYRVAP----------------------------------LDARQRVMLDFAAKMT 133 (190)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHCGGGSC----------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhcccch----------------------------------hhHHHHHHHHHHHHHH
Q ss_pred hccHHH-HHHHHHHHHcCCCHHHHHHHH
Q 040691 458 TRARDL-RERFDLIVEAGLERKDVCDMV 484 (585)
Q Consensus 458 ~~~~~l-~~rv~fL~~~G~s~~~v~~mI 484 (585)
.....+ ..-++-|++.||+.++|.+++
T Consensus 134 ~~~~~v~d~~~~~L~~~G~sd~eI~el~ 161 (190)
T d2pfxa1 134 RASAEIEEADREVLRSHGFNDRDIWDIA 161 (190)
T ss_dssp HHGGGCCHHHHHHHHHTTCCHHHHHHHH
T ss_pred hCcCCCCHHHHHHHHHCCCCHHHHHHHH
No 16
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=36 Score=22.81 Aligned_cols=32 Identities=34% Similarity=0.466 Sum_probs=15.8
Q ss_pred HHHHHhCCCcchhhHHHHHHHHhhcc-HHHHHHHHHHH
Q 040691 435 EFLLEVGFEENSKQFETALKDLRTRA-RDLRERFDLIV 471 (585)
Q Consensus 435 ~fL~~lG~~e~~~~~~~al~~~~~~~-~~l~~rv~fL~ 471 (585)
.-|.+|||+++ +|.+.+..++ ..++.-++|+.
T Consensus 7 ~~L~~MGF~~~-----~a~~Al~~t~n~~ve~A~~Wl~ 39 (51)
T d2crna1 7 EPLLAMGFPVH-----TALKALAATGRKTAEEALAWLH 39 (51)
T ss_dssp HHHHHTSCCHH-----HHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHcCCCHH-----HHHHHHHHHCCCCHHHHHHHHH
Confidence 34566777764 2222222222 24566666665
No 17
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.77 E-value=38 Score=22.43 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHhhCC
Q 040691 204 GVLRSKLQAFEKLGLSQSFVRKVIVRNP 231 (585)
Q Consensus 204 ~~l~~~l~~L~~lGls~~~i~~ii~~~P 231 (585)
+.....+..|..||.++.+..+++.+-+
T Consensus 3 ~~~~eAi~AL~~LGY~~~ea~~av~~i~ 30 (48)
T d1cuka1 3 DAEQEAVARLVALGYKPQEASRMVSKIA 30 (48)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4556678899999999999999998753
No 18
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.04 E-value=40 Score=23.16 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=24.0
Q ss_pred hCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcchhhhhh
Q 040691 215 KLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHS 263 (585)
Q Consensus 215 ~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~~i~~~l 263 (585)
..|+|...+.+++...|.+ +. ..-+.+.+..+++|..++.+++-|
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s~-~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---AE-ETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---CH-HHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---CH-HHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4567777777766666643 21 223334444556666666555433
Done!