BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040693
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 65/250 (26%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK +W + D A+ + IT + KG +G E G+ +G ++
Sbjct: 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSA 182
Query: 60 LDAKTGRILWQTFMLP---------------------DNFGKLNEYAGAAIWGSSPSIDP 98
DA TG++ W+ + +P D + KL G +W S + DP
Sbjct: 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLG--GGGTVWDSM-AYDP 239
Query: 99 IRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY 158
+ +Y+ TGN +R +P D + +S+LA+ DTGK+ W+
Sbjct: 240 ELDLLYVGTGNGSPWNREVR---------SPGGGDNL-----YLSSILAIRPDTGKLAWH 285
Query: 159 KQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAW 218
Q+ PG S D + + + + +++ K+GF +
Sbjct: 286 YQV------------------TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFY 327
Query: 219 ALDRDSGSLI 228
LDR +G LI
Sbjct: 328 VLDRTNGKLI 337
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 280 VAMDASNGNVLWSTADPSNGTAPGPVTVANGV-----LFGGSTY---RQGPIYAMDVKTG 331
+A+DA++G LW DP + + V L+G Y G + A+D KTG
Sbjct: 79 IAVDAASGKELWRY-DPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG 137
Query: 332 KILWSYDTGA-----TIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373
K +WS T +I G V G + +GNG +G + F S
Sbjct: 138 KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNG---GAEYGVRGFVS 181
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 274 TIAGGWVAMDASNGNVLWS--TADPSN--GTAPGPVTVANGVLF--GGSTY-RQGPIYAM 326
T+ G +A+DA G +WS T DP+ P V V+ GG+ Y +G + A
Sbjct: 124 TLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAY 183
Query: 327 DVKTGKILWSYDT 339
D TGK+ W + T
Sbjct: 184 DADTGKLAWRFYT 196
>pdb|1KB0|A Chain A, Crystal Structure Of Quinohemoprotein Alcohol
Dehydrogenase From Comamonas Testosteroni
Length = 677
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 65/251 (25%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGT--YYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ + GK VW + + +T++G +KG +G E G+ +G +
Sbjct: 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGV--------RGYIT 193
Query: 59 KLDAKTGRILWQTFMLP-------------------DNFGKLNEYAGAAIWGSSPSIDPI 99
DA+TG W+ F +P D GK E G S + D
Sbjct: 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253
Query: 100 RNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159
N +Y+ TGN +R + +N + S++ALD DTGK W+
Sbjct: 254 LNTMYVGTGNGSPWSHKVRSPKGGDNL--------------YLASIVALDPDTGKYKWHY 299
Query: 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADF-GEAPMMLSMYRNKVK-HDIVVAVQKSGFA 217
Q D W D+ PM+L+ + K +++ K+GF
Sbjct: 300 QETPGDNW--------------------DYTSTQPMILADIKIAGKPRKVILHAPKNGFF 339
Query: 218 WALDRDSGSLI 228
+ LDR +G I
Sbjct: 340 FVLDRTNGKFI 350
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 281 AMDASNGNVLWS---TADPSNGTAPGPVTVANGV-LFGGSTYR---QGPIYAMDVKTGKI 333
A+D GN +W+ D S G V GV L+ G Y G + A+D TGK
Sbjct: 91 AIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKE 150
Query: 334 LWSYDT------GATIYGGASVSNGCIYMGNG 359
+W +T TI G V G + +GNG
Sbjct: 151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG 182
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 68/252 (26%)
Query: 1 AVKRSNGKLVWKTKLD-DHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ G+ W DH RS+ IT + G +G E G+ +G +
Sbjct: 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV--------RGYVT 186
Query: 59 KLDAKTGRILWQTFMLPDN-----------------FGK--LNEYAGAAIWGSSPSIDPI 99
DA+TG+ W+ + +P + FG + + G W S + DP
Sbjct: 187 AYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSF-AYDPE 245
Query: 100 RNHVYIATGN--LYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVW 157
N +YI GN L+ P Q + +N +S++A++ DTG+ VW
Sbjct: 246 LNLLYIGVGNGSLWD-PKWRSQAKGDNL---------------FLSSIVAVNADTGEYVW 289
Query: 158 YKQLGGYDVW-FGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGF 216
+ Q D W + A + P P +AP K+GF
Sbjct: 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-------------------KNGF 330
Query: 217 AWALDRDSGSLI 228
+ +DR +G L+
Sbjct: 331 FYVIDRATGELL 342
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPV---TVANGV-LFGGSTY---RQGPIYAMDVKTGKI 333
A+DA +G ++W S+ G V GV ++ G Y G + A+D KTG+
Sbjct: 84 ALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQR 143
Query: 334 LWSYDTGA------TIYGGASVSNGCIYMGNG 359
WS DT A TI G V NG + +GNG
Sbjct: 144 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNG 175
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 308 ANGVLFGGSTYRQGP---IYAMDVKTGKILWSYDTGA-----------TIYGGASVSNGC 353
A ++ G Y GP +YA+D + G+++W YD + + G +V G
Sbjct: 64 ATPIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGK 123
Query: 354 IYMG 357
+Y+G
Sbjct: 124 VYVG 127
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 76/258 (29%)
Query: 1 AVKRSNGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ G+ VWK + D S +T++ K +G+S E G+ +G L
Sbjct: 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV--------RGYLTA 186
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEYAGAAIWGSSP----------------- 94
D KTG +W+ + +L +F N + G G+
Sbjct: 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY 246
Query: 95 SIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDT 152
+ DP N +Y TGN P ++ + P ++ + ++ D DT
Sbjct: 247 AYDPGTNLIYFGTGN-------------------PAPWNETMRPGDNKWTMTIFGRDADT 287
Query: 153 GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK--VKHDIVVA 210
G+ + Q +D W A G MMLS ++K ++
Sbjct: 288 GEAKFGYQKTPHDEWEYA-------------------GVNVMMLSEQKDKDGKARKLLTH 328
Query: 211 VQKSGFAWALDRDSGSLI 228
++G + LDR G+L+
Sbjct: 329 PDRNGIVYTLDRTDGALV 346
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 307 VANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGF 366
+ N VL+G + G ++A + G+ ++GAT+ SNGC YM G V +G
Sbjct: 1323 IGNTVLYGATA---GKLFAAG-QAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGR 1378
Query: 367 GNKNFTSGTS 376
NF +G +
Sbjct: 1379 VGDNFAAGMT 1388
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 76/258 (29%)
Query: 1 AVKRSNGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ G+ VWK + D S +T++ K +G+S E G+ +G L
Sbjct: 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV--------RGYLTA 186
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEYAGAAIWGSSP----------------- 94
D KTG +W+ + +L +F N + G G+
Sbjct: 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY 246
Query: 95 SIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDT 152
+ DP N +Y TGN P ++ + P ++ + ++ D DT
Sbjct: 247 AYDPGTNLIYFGTGN-------------------PAPWNETMRPGDNKWTMTIFGRDADT 287
Query: 153 GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK--VKHDIVVA 210
G+ + Q +D W A G MMLS ++K ++
Sbjct: 288 GEAKFGYQKTPHDEWDYA-------------------GVNVMMLSEQKDKDGKARKLLTH 328
Query: 211 VQKSGFAWALDRDSGSLI 228
++G + LDR G+L+
Sbjct: 329 PDRNGIVYTLDRTDGALV 346
>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
Length = 599
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 76/258 (29%)
Query: 1 AVKRSNGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ G+ VWK + D S +T++ K +G+S E G+ +G L
Sbjct: 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV--------RGYLTA 186
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEYAGAAIWGSSP----------------- 94
D KTG +W+ + +L +F N + G G+
Sbjct: 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY 246
Query: 95 SIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDT 152
+ DP N +Y TGN P ++ + P ++ + ++ D DT
Sbjct: 247 AYDPGTNLIYFGTGN-------------------PAPWNETMRPGDNKWTMTIFGRDADT 287
Query: 153 GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK--VKHDIVVA 210
G+ + Q +D W A G MMLS ++K ++
Sbjct: 288 GEAKFGYQKTPHDEWDYA-------------------GVNVMMLSEQKDKDGKARKLLTH 328
Query: 211 VQKSGFAWALDRDSGSLI 228
++G + LDR G+L+
Sbjct: 329 PDRNGIVYTLDRTDGALV 346
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340
AMD +G V+W + A G + A ++F G+ G A D K+GK LW + TG
Sbjct: 470 AMDPVSGKVVWEHKEHLPLWA-GVLATAGNLVFTGTG--DGYFKAFDAKSGKELWKFQTG 526
Query: 341 ATIYGGASV--SNGCIYMGNGYKVTVGFG 367
+ I +G Y+G VTVG+G
Sbjct: 527 SGIVSPPITWEQDGEQYLG----VTVGYG 551
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 92/267 (34%), Gaps = 79/267 (29%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-------ITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
A+ ++ GK+VWK K DH + I G K G+S E G+
Sbjct: 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVV------- 183
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLN-----------------------------EY 84
G L D TG +W + + G+LN +
Sbjct: 184 -GRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSH 242
Query: 85 AGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNS 144
G A W S+ S D N + + GN R + N P D +++
Sbjct: 243 GGGAPWQSA-SFDAETNTIIVGAGNPGPWNTWARTAKGGN----PHDYDSL-----YTSG 292
Query: 145 LLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF-GEAPMMLSMYRNKV 203
+ +D +G++ W+ Q D W DF G ++L Y+ K
Sbjct: 293 QVGVDPSSGEVKWFYQHTPNDAW--------------------DFSGNNELVLFDYKAK- 331
Query: 204 KHDIVVA---VQKSGFAWALDRDSGSL 227
IV A ++GF + +DR +G L
Sbjct: 332 DGKIVKATAHADRNGFFYVVDRSNGKL 358
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Query: 307 VANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338
V++GV++ ++Y + ++A+D KTGK LW+Y+
Sbjct: 66 VSDGVIYVTASYSR--LFALDAKTGKRLWTYN 95
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 307 VANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGF 366
+ N VL+G + G ++A + G+ ++GAT+ SNGC YM G V +G
Sbjct: 1323 IGNTVLYGATA---GKLFAAG-QAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGR 1378
Query: 367 GNKNFTSGTS 376
NF +G +
Sbjct: 1379 VGDNFAAGMT 1388
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ S+G + W+TK+ A S +S +GL L T G L L
Sbjct: 118 ALNTSDGTVAWQTKVAGEALSRPVVS----------------DGLV--LIHTSNGQLQAL 159
Query: 61 DAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPI---------RNHVYI 105
+ G + W + L + A + G + + + + +
Sbjct: 160 NEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 219
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162
ATG+ I + + + TTP + + ++ +L ALDL +G+I+W ++LG
Sbjct: 220 ATGST-----EIDRLSDVD--TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG 269
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ S+G + W+TK+ A S +S +GL L T G L L
Sbjct: 117 ALNTSDGTVAWQTKVAGEALSRPVVS----------------DGLV--LIHTSNGQLQAL 158
Query: 61 DAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPI---------RNHVYI 105
+ G + W + L + A + G + + + + +
Sbjct: 159 NEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162
ATG+ I + + + TTP + + ++ +L ALDL +G+I+W ++LG
Sbjct: 219 ATGST-----EIDRLSDVD--TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG 268
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ S+G + W+TK+ A S +S +GL L T G L L
Sbjct: 134 ALNTSDGTVAWQTKVAGEALSRPVVS----------------DGLV--LIHTSNGQLQAL 175
Query: 61 DAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPI---------RNHVYI 105
+ G + W + L + A + G + + + + +
Sbjct: 176 NEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 235
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162
ATG+ I + + + TTP + + ++ +L ALDL +G+I+W ++LG
Sbjct: 236 ATGST-----EIDRLSDVD--TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG 285
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ S+G + W+TK+ A S +S +GL L T G L L
Sbjct: 109 ALNTSDGTVAWQTKVAGEALSRPVVS----------------DGLV--LIHTSNGQLQAL 150
Query: 61 DAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPI---------RNHVYI 105
+ G + W + L + A + G + + + + +
Sbjct: 151 NEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 210
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162
ATG+ I + + + TTP + + ++ +L ALDL +G+I+W ++LG
Sbjct: 211 ATGST-----EIDRLSDVD--TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG 260
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ S+G + W+TK+ A S +S +GL L T G L L
Sbjct: 112 ALNTSDGTVAWQTKVAGEALSRPVVS----------------DGLV--LIHTSNGQLQAL 153
Query: 61 DAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPI---------RNHVYI 105
+ G + W + L + A + G + + + + +
Sbjct: 154 NEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 213
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162
ATG+ I + + + TTP + + ++ +L ALDL +G+I+W ++LG
Sbjct: 214 ATGST-----EIDRLSDVD--TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG 263
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 76/258 (29%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ G+ WK + D I + T + Y V +I EL +G +
Sbjct: 135 ALNAKTGEEFWKVENGD-----IKVGQTLTQAPYVVHDLAIVGSSGAELGV--RGHVTAY 187
Query: 61 DAKTGRILWQTFM--------LPDNFGKLNEYAGAAIWGSSP-----------------S 95
+ +TG W+ + L D+F N + G G++ +
Sbjct: 188 NVRTGEQAWRYYATGPDAEIGLADDFNSANPHYGQKGLGTATWEGDAWKIGGGTNWGWYA 247
Query: 96 IDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDTG 153
DP N +Y +GN P ++ + P ++ + ++ A D DTG
Sbjct: 248 YDPAANLIYYGSGN-------------------PAPWNETMRPGDNKWTMTITARDADTG 288
Query: 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF-GEAPMMLSMYRNKV--KHDIVVA 210
K+ + Q +D W DF G +MLS +K K ++
Sbjct: 289 KMKFGYQKTPHDEW--------------------DFAGVNVIMLSEQTDKTGKKRKLLTH 328
Query: 211 VQKSGFAWALDRDSGSLI 228
++G + LDR++G LI
Sbjct: 329 PDRNGIVYTLDRENGDLI 346
>pdb|3Q7M|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup I222
pdb|3Q7N|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P212121
Length = 376
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 40/177 (22%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ S+G + W+TK+ A S +S +GL L T G L L
Sbjct: 117 ALNTSDGTVAWQTKVAGEALSRPVVS----------------DGLV--LIHTSNGQLQAL 158
Query: 61 DAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPI---------RNHVYI 105
+ G + W + L + A + G + + + + +
Sbjct: 159 NEADGAVKWTVNLDXPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLXEQGQXIWQQRISQ 218
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162
ATG+ I + + + TTP + + ++ +L ALDL +G+I W ++LG
Sbjct: 219 ATGST-----EIDRLSDVD--TTPVVVNGVVFALAYNGNLTALDLRSGQIXWKRELG 268
>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
pdb|2AD6|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C)
pdb|2AD6|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C)
pdb|2AD7|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Methanol
pdb|2AD7|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Methanol
pdb|2AD8|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Ethanol
pdb|2AD8|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Ethanol
Length = 571
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 75/257 (29%)
Query: 1 AVKRSNGKLVWKTKL-DDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK+ W+ ++ D S +T + K +G S E G+ +G++
Sbjct: 129 ALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV--------RGAVNA 180
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEYAGAAIWGSSP----------------- 94
D KTG + W+ F L +F N + G G+
Sbjct: 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240
Query: 95 SIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDT 152
+ DP N Y +GN P ++ + P ++ + ++ DLDT
Sbjct: 241 AYDPKLNLFYYGSGN-------------------PAPWNETMRPGDNKWTMTIWGRDLDT 281
Query: 153 GKIVWYKQLGGYDVW-FGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211
G W Q +D W F N + + P + P++ + RN
Sbjct: 282 GMAKWGYQKTPHDEWDFAGVNQMVLTDQP------VNGKMTPLLSHIDRN---------- 325
Query: 212 QKSGFAWALDRDSGSLI 228
G + L+R++G+LI
Sbjct: 326 ---GILYTLNRENGNLI 339
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 280 VAMDASNGNVLWSTA--DPSNGTA--PGPVTVANGVLFGGSTYR---QGPIYAMDVKTGK 332
+A+DA G + W DP G+ P + VL G S +G + A D+KTG+
Sbjct: 128 LALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187
Query: 333 ILW-SYDTGA 341
+ W ++ TG+
Sbjct: 188 LKWRAFATGS 197
>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
Length = 573
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 75/257 (29%)
Query: 1 AVKRSNGKLVWKTKL-DDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK+ W+ ++ D S +T + K +G S E G+ +G++
Sbjct: 131 ALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV--------RGAVNA 182
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEYAGAAIWGSSP----------------- 94
D KTG + W+ F L +F N + G G+
Sbjct: 183 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 242
Query: 95 SIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDT 152
+ DP N Y +GN P ++ + P ++ + ++ DLDT
Sbjct: 243 AYDPKLNLFYYGSGN-------------------PAPWNETMRPGDNKWTMTIWGRDLDT 283
Query: 153 GKIVWYKQLGGYDVW-FGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211
G W Q +D W F N + + P + P++ + RN
Sbjct: 284 GMAKWGYQKTPHDEWDFAGVNQMVLTDQP------VNGKMTPLLSHIDRN---------- 327
Query: 212 QKSGFAWALDRDSGSLI 228
G + L+R++G+LI
Sbjct: 328 ---GILYTLNRENGNLI 341
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 277 GGWVAMDASNGNVLWSTA--DPSNGTA--PGPVTVANGVLFGGSTYR---QGPIYAMDVK 329
G +A+DA G + W DP G+ P + VL G S +G + A D+K
Sbjct: 127 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK 186
Query: 330 TGKILW-SYDTGA 341
TG++ W ++ TG+
Sbjct: 187 TGELKWRAFATGS 199
>pdb|2BSZ|A Chain A, Structure Of Mesorhizobium Loti Arylamine N-
Acetyltransferase 1
pdb|2BSZ|B Chain B, Structure Of Mesorhizobium Loti Arylamine N-
Acetyltransferase 1
Length = 278
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 85 AGAAIWGSSPSIDPIRNHV----------YIAT----GNLYSVPLHIRQCQEENNQTTPT 130
A +WG S R+H+ YIA G + PL + +E Q TP
Sbjct: 95 AARVLWGQSEDAITARSHMLLRVELDGRTYIADVGFGGLTLTAPLLLEPGRE---QKTPH 151
Query: 131 SPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLN 176
P + +E ++H A+ D + + Y+V + N++L+
Sbjct: 152 EPFRIVEADDHFRLQAAIGGDWRSLYRFDLQPQYEVDYSVTNYFLS 197
>pdb|2BE1|A Chain A, Structure Of The Compact Lumenal Domain Of Yeast Ire1
pdb|2BE1|B Chain B, Structure Of The Compact Lumenal Domain Of Yeast Ire1
Length = 339
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 206 DIVVAVQKSGFAWALDRDSGSLIWSME 232
DI++A G A+DR +G +IWS+E
Sbjct: 11 DILIAADVEGGLHAVDRRNGHIIWSIE 37
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222
Y V G ++Y+N N P + FGE +M N + VVA WALDR
Sbjct: 52 YVVEKGTVDFYVNDNKVNSSGPGSSFGELALMY----NSPRAATVVATSDC-LLWALDR 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,862,363
Number of Sequences: 62578
Number of extensions: 575285
Number of successful extensions: 1366
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 123
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)