BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040693
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P77931|PVADH_PSESP Polyvinylalcohol dehydrogenase OS=Pseudomonas sp. GN=pvaA PE=1 SV=1
Length = 639
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 184/422 (43%), Gaps = 80/422 (18%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFE---LCCTFQGSL 57
A+ GK +WKT +DD +T S TY++G +V SS E CC F+G+L
Sbjct: 255 ALDAQTGKQLWKTTIDDQPGVQMTGSPTYHEGKLFVPISSGNEAFATNDQWECCKFRGAL 314
Query: 58 AKLDAKTGRILWQTFML-----PDNFGKLNEY----AGAAIWGSSPSIDPIRNHVYIATG 108
LDA +G++LW+T+ P KL + AG +IW S+P+IDP R VY+AT
Sbjct: 315 VALDALSGKVLWKTYTTQKEPAPFRLNKLGKQMWGPAGGSIW-SAPTIDPKRGLVYVATS 373
Query: 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWF 168
N Y+ H S++++A++++TGK+ W Q+ D +
Sbjct: 374 NSYTEVHH-----------------------EGSDAVMAMEIETGKVRWINQVTKDDNYI 410
Query: 169 GACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDS-GSL 227
C NCP PD G +P++ ++ + +V QKSG +A+D D+ G L
Sbjct: 411 IGCP--RAANCPEKVGPDFALGNSPILHTLQDGR---QYIVVGQKSGAVYAMDPDNDGEL 465
Query: 228 IWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG 287
IW PG GG +G A D +Y I++ + KP G A+ +G
Sbjct: 466 IWMRRVSPGSELGGVEFGMAADAENVYVGISDVITRKGG-KP--------GVYALRIRDG 516
Query: 288 NVLWSTADPS----------NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337
+W+ P + VT GV+F GS G A GK+LW +
Sbjct: 517 ADVWAFPAPRTPCRWNNIFCHPAVSQAVTAMPGVVFAGSM--DGHFRAFSTSDGKVLWEF 574
Query: 338 DTGATIY---------------GGASVSNGCIYMGNGY--KVTVGFGNKNFTSGTSLYAF 380
+T A Y G +++ G +Y+ +GY + T G+ G L AF
Sbjct: 575 NTAAAPYKTVAGKQADGGVMDGAGPTIAGGMVYVHSGYAGRSTQNAGDLRGREGNVLIAF 634
Query: 381 CV 382
V
Sbjct: 635 SV 636
>sp|Q588Z1|PVADH_SPHS1 Polyvinylalcohol dehydrogenase OS=Sphingopyxis sp. (strain 113P3)
GN=pvadh PE=1 SV=3
Length = 654
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 192/429 (44%), Gaps = 86/429 (20%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYV----GTSSIEEGLTFELCCTFQGS 56
A+ GK +WKT +DD +T S TY+ G YV GT + + T+E CC F+G+
Sbjct: 262 ALDAETGKQLWKTVVDDQPALQMTGSITYWDGKIYVPISSGTEAFAQIPTWE-CCKFRGA 320
Query: 57 LAKLDAKTGRILWQTFML---PDNFGKLNEYAGAAIWGSS-------PSIDPIRNHVYIA 106
L LDA TG+ILW+ + P F KLN+ AG +WG S P++D R +Y+
Sbjct: 321 LVALDAATGKILWKRYTTEQEPRPF-KLNK-AGRQMWGPSGGAIWVTPTVDEARRLIYVG 378
Query: 107 TGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDV 166
T N Y+ P ++S+S++A+D DTG + W QL D
Sbjct: 379 TSNSYT-----------------------DVPYDNSDSVMAIDADTGAVRWTVQLLADDN 415
Query: 167 WFGACNWYL---NPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD-R 222
+ C W + NCP PD G AP+ M K + ++ QKSG +ALD
Sbjct: 416 YIDGC-WQKGKEHANCPNPLGPDFSIGAAPIYRKMADGK---EFLLVGQKSGMIYALDPA 471
Query: 223 DSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282
+ G+ IW + G GG +G A D+ ++Y +++ + +K+ G W A+
Sbjct: 472 NKGAKIWERQLSLGSALGGIEFGTAADDGKVYAGVSDIASQ------AKDRGKPGLW-AL 524
Query: 283 DASNGNVLWSTADPSN-----------GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTG 331
D G V W+ + + G ++V G +F GS G A D TG
Sbjct: 525 DIRTGEVAWNFLNAPDTKCRWNNWWCHGAFSQAISVIPGAIFAGS--YDGHFRAFDTATG 582
Query: 332 KILWSYDT---------GATIYGGA------SVSNGCIYMGNGY---KVTVGFGNKNFTS 373
KI+W DT GA +GG +++ G +Y+ +GY G + T
Sbjct: 583 KIIWDVDTGTKAVTTLSGAKAFGGVMDGAGPTIAGGMVYVHSGYAGRSSESGGRDLRGTD 642
Query: 374 GTSLYAFCV 382
G L AF V
Sbjct: 643 GNILMAFSV 651
>sp|Q8GR64|QHED_PSEPU Quinohemoprotein alcohol dehydrogenase ADH IIB OS=Pseudomonas
putida GN=qbdA PE=1 SV=1
Length = 690
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 61/248 (24%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK +W + D A+ + IT + KG +G E G+ +G ++
Sbjct: 153 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSA 204
Query: 60 LDAKTGRILWQTFM------LPDNFGKLNEYA-------------GAAIWGSSPSIDPIR 100
DA TG++ W+ + LP +L E A G +W S + DP
Sbjct: 205 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM-AYDPEL 263
Query: 101 NHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160
+ +Y+ TGN +R +P D + +S+LA+ DTGK+ W+ Q
Sbjct: 264 DLLYVGTGNGSPWNREVR---------SPGGGDNL-----YLSSILAIRPDTGKLAWHYQ 309
Query: 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220
+ PG S D + + + + +++ K+GF + L
Sbjct: 310 V------------------TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 351
Query: 221 DRDSGSLI 228
DR +G LI
Sbjct: 352 DRTNGKLI 359
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 280 VAMDASNGNVLWSTADPSNGTAPGPVTVANGV-----LFGGSTY---RQGPIYAMDVKTG 331
+A+DA++G LW DP + + V L+G Y G + A+D KTG
Sbjct: 101 IAVDAASGKELWRY-DPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG 159
Query: 332 KILWSYDTGA-----TIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373
K +WS T +I G V G + +GNG +G + F S
Sbjct: 160 KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNG---GAEYGVRGFVS 203
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 274 TIAGGWVAMDASNGNVLWS--TADPSN--GTAPGPVTVANGVLF--GGSTY-RQGPIYAM 326
T+ G +A+DA G +WS T DP+ P V V+ GG+ Y +G + A
Sbjct: 146 TLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAY 205
Query: 327 DVKTGKILWSYDT 339
D TGK+ W + T
Sbjct: 206 DADTGKLAWRFYT 218
>sp|Q46444|QHED_COMTE Quinohemoprotein ethanol dehydrogenase type-1 OS=Comamonas
testosteroni GN=qheDH PE=1 SV=1
Length = 708
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 65/251 (25%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGT--YYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ + GK VW + + +T++G +KG +G E G+ +G +
Sbjct: 173 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGKRGAEYGV--------RGYIT 224
Query: 59 KLDAKTGRILWQTFMLP-------------------DNFGKLNEYAGAAIWGSSPSIDPI 99
DA+TG W+ F +P D GK E G S + D
Sbjct: 225 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 284
Query: 100 RNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159
N +Y+ TGN +R + +N + S++ALD DTGK W+
Sbjct: 285 LNTMYVGTGNGSPWSHKVRSPKGGDNL--------------YLASIVALDPDTGKYKWHY 330
Query: 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADF-GEAPMMLSMYRNKVK-HDIVVAVQKSGFA 217
Q D W D+ PM+L+ + K +++ K+GF
Sbjct: 331 QETPGDNW--------------------DYTSTQPMILADIKIAGKPRKVILHAPKNGFF 370
Query: 218 WALDRDSGSLI 228
+ LDR +G I
Sbjct: 371 FVLDRTNGKFI 381
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 31/141 (21%)
Query: 232 EAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291
+AGPG G W A K FN +P K+ G +A D W
Sbjct: 459 QAGPGKPQSGTGWNTA---------------KFFNAEPPKSKPF-GRLLAWDPVAQKAAW 502
Query: 292 ST--ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349
S P NG G +T A V+F G+ G + A TG+ LW TG + S
Sbjct: 503 SVEHVSPWNG---GTLTTAGNVVFQGTA--DGRLVAYHAATGEKLWEAPTGTGVVAAPST 557
Query: 350 SNGCIYMGNGYK---VTVGFG 367
YM +G + V VG+G
Sbjct: 558 -----YMVDGRQYVSVAVGWG 573
>sp|O05542|DHET_GLUOX Alcohol dehydrogenase [cytochrome c] OS=Gluconobacter oxydans
(strain 621H) GN=adhA PE=1 SV=2
Length = 757
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 92/258 (35%), Gaps = 70/258 (27%)
Query: 1 AVKRSNGKLVW------KTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
A+ GKLVW K H RS+ + + KG +G E G
Sbjct: 167 ALDAKTGKLVWSVYTIPKEAQLGHQRSYTVDGAPRIAKGKVLIGNGGAEFGA-------- 218
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAI--------WGS------------- 92
+G ++ DA+TG++ W+ F +P+ K + A I WG
Sbjct: 219 RGFVSAFDAETGKLDWRFFTVPNPENKPDGAASDDILMSKAYPTWGKNGAWKQQGGGGTV 278
Query: 93 --SPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDL 150
S DP+ + VY+ GN R + +N S++A++
Sbjct: 279 WDSLVYDPVTDLVYLGVGNGSPWNYKFRSEGKGDNLFL--------------GSIVAINP 324
Query: 151 DTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVA 210
DTGK VW+ Q D W D + M L M N ++V
Sbjct: 325 DTGKYVWHFQETPMDEW------------------DYTSVQQIMTLDMPVNGEMRHVIVH 366
Query: 211 VQKSGFAWALDRDSGSLI 228
K+GF + +D +G I
Sbjct: 367 APKNGFFYIIDAKTGKFI 384
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 29/115 (25%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPV-------TVANGVLF-GGSTYR---QGPIYAMDVK 329
A+DA+ G +LWS DP PG + TV+ G + G Y G + A+D K
Sbjct: 116 ALDAATGKLLWSY-DPK---VPGNIADRGCCDTVSRGAAYWNGKVYFGTFDGRLIALDAK 171
Query: 330 TGKILWS-----------YDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373
TGK++WS + T+ G ++ G + +GNG FG + F S
Sbjct: 172 TGKLVWSVYTIPKEAQLGHQRSYTVDGAPRIAKGKVLIGNG---GAEFGARGFVS 223
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 297 SNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-----------TIYG 345
+N G + NGV++ + + + + A+D TGK+LWSYD T+
Sbjct: 90 TNRGQEGTPLIVNGVMYATTNWSK--MKALDAATGKLLWSYDPKVPGNIADRGCCDTVSR 147
Query: 346 GASVSNGCIYMG 357
GA+ NG +Y G
Sbjct: 148 GAAYWNGKVYFG 159
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 21/82 (25%)
Query: 1 AVKRSNGKLVWKTK-------LDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
A+ + GKL+W D ++ Y+ G Y GT F
Sbjct: 116 ALDAATGKLLWSYDPKVPGNIADRGCCDTVSRGAAYWNGKVYFGT--------------F 161
Query: 54 QGSLAKLDAKTGRILWQTFMLP 75
G L LDAKTG+++W + +P
Sbjct: 162 DGRLIALDAKTGKLVWSVYTIP 183
>sp|Q5NIB1|BAMB_FRATT Outer membrane protein assembly factor BamB OS=Francisella
tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
GN=bamB PE=3 SV=1
Length = 456
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 264 NFNLKPS-KNSTI-----AGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST 317
N+N+ P+ N T+ G A+ +NG ++W D + P T+AN V+FG
Sbjct: 58 NYNVAPAYANDTVFVPNQNGMAYALAITNGKIIWKN-DTGTNLSVQPNTIANAVIFGS-- 114
Query: 318 YRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYM 356
+G + A+D K G+ LW D ++I+ ++ + IY+
Sbjct: 115 -IKGTLTAIDDKDGQTLWRTDAPSSIFSQPTIYDNSIYL 152
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWS 336
G VA+D +G +LW+ + + + NGV+F +T + A +++TG +W+
Sbjct: 253 GAIVALDKDSGKMLWA----KKASIINNMAINNGVIF--TTQDDSELKAYNIQTGDTVWT 306
Query: 337 YDT 339
DT
Sbjct: 307 QDT 309
>sp|P15877|DHG_ECOLI Quinoprotein glucose dehydrogenase OS=Escherichia coli (strain K12)
GN=gcd PE=1 SV=3
Length = 796
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 130 TSPD-----KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPS 184
T+PD + E E +++S+LAL+ TGK+ W Q +D+W
Sbjct: 423 TTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLW----------------- 465
Query: 185 PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLI 228
D D P + + N K ++ A K+G + LDR +G L+
Sbjct: 466 -DMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV 508
>sp|Q5X521|BAMB_LEGPA Outer membrane protein assembly factor BamB OS=Legionella
pneumophila (strain Paris) GN=bamB PE=3 SV=1
Length = 384
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 50/210 (23%)
Query: 203 VKHDIVVAVQKSGFAWALDRDSGSLIWS------MEAGPGGLGGGAMWGA---------A 247
++ D++ SG A++R G + WS + +GP G G
Sbjct: 69 IRGDVIYTADASGLVQAVNRKDGQIKWSTALKNNIVSGPTVAAGYVAVGTNASTLVLLNQ 128
Query: 248 TDERRIYTNIANSQ--------HKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTAD---P 296
+D + I+ N +++ H+ K TI G A+DA NG LW AD P
Sbjct: 129 SDGKEIWQNKVSAEVLAPPAISHQKVIAK-----TIDGKVYAIDAVNGKQLW-VADHGAP 182
Query: 297 S--NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILW----SYDTGAT-------I 343
S + P+ V + VL G + G + A++++TG+++W +Y TGA+ I
Sbjct: 183 SLVLKASSSPIIVDDLVLVG---FSDGKLDALELQTGRLIWQRSIAYGTGASDVERLVDI 239
Query: 344 YGGASVSNGCIYMG--NGYKVTVGFGNKNF 371
+SN Y+ GY + N F
Sbjct: 240 DSDPIISNNVAYLATYQGYVGALSLSNGQF 269
>sp|P05465|DHGA_ACICA Quinoprotein glucose dehydrogenase A OS=Acinetobacter calcoaceticus
GN=gdhA PE=3 SV=1
Length = 801
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 133 DKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEA 192
D+ E ++NS+LA++ TGK+VW Q +D+W + + P PS
Sbjct: 436 DRTELKERYANSMLAINASTGKLVWNFQTTHHDLW--------DMDVPSQPS-------- 479
Query: 193 PMMLSMYRNKVKHDI--VVAVQKSGFAWALDRDSGSLIWSMEAGP 235
L+ +NK + + + K+G A+ LDR +G I + P
Sbjct: 480 ---LADIKNKAGQTVPAIYVLTKTGNAFVLDRRNGQPIVPVTEKP 521
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 298 NGTAPGPVTVANGVLFGGST------YRQGPIYAMDVKTGKILWSYDTGA 341
N T+PG VT + V+ G T G I DV TGK+LW +DTGA
Sbjct: 339 NPTSPGIVTGSTVVIAGSVTDNYSNKEPSGVIRGYDVNTGKLLWVFDTGA 388
>sp|Q60282|Y3523_METJA Uncharacterized protein MJECL23 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL23 PE=4 SV=1
Length = 827
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 42/192 (21%)
Query: 197 SMYRNKVKHD---------IVVAVQKSGFAWALDRDSGSLIWSMEAGPGG---------- 237
++R+K+KHD IVV K G+ ALD ++G+++W +A G
Sbjct: 582 EIWRSKIKHDVRSLSIKDDIVVLGCKKGYILALDINAGNMLWEFKAKSGKSIRNLSIKND 641
Query: 238 --LGGGAMWGAATDE---RRIYTNIANSQHKNFNLKPSKNSTIA---GGWV-AMDASNGN 288
L G + A D R ++ A + K+ ++K K++ + GG+V +D + G
Sbjct: 642 ILLFGCDNYLYALDIDTGRELWRFKAEGEVKSLSIK--KDNVLLGCRGGYVYLLDINTGE 699
Query: 289 VLWSTADPSNGTAPGPV---TVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYG 345
+ G V ++ + ++ G + +YA+D+ G+ LW++ T +
Sbjct: 700 KM------ERFKVVGSVLRLSIKDDIVILGCN--RECVYALDINAGENLWAFKTDGDV-N 750
Query: 346 GASVSNGCIYMG 357
G S+ N + +G
Sbjct: 751 GLSIKNDAVLLG 762
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 38/168 (22%)
Query: 203 VKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPG-----------GLGGGAMW------- 244
+K DIV+ SG +A+D +G +W +A LG G ++
Sbjct: 503 IKGDIVILGCVSGHVYAIDIKTGKKLWEFKAEDTVWGLSIKDDIVVLGCGNIFESIVMLK 562
Query: 245 -GAATDERRIYTNIANS---------QHKNFNLKPSKNSTIAG---GWV-AMDASNGNVL 290
G +E Y N+ +H +L + + G G++ A+D + GN+L
Sbjct: 563 NGKILEEGYAYALDINTGREIWRSKIKHDVRSLSIKDDIVVLGCKKGYILALDINAGNML 622
Query: 291 WSTADPSNGTAPGPVTVANGV-LFGGSTYRQGPIYAMDVKTGKILWSY 337
W S G + +++ N + LFG Y +YA+D+ TG+ LW +
Sbjct: 623 WEFKAKS-GKSIRNLSIKNDILLFGCDNY----LYALDIDTGRELWRF 665
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 121/327 (37%), Gaps = 70/327 (21%)
Query: 55 GSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVP 114
G + +D KTG+ LW+ A +WG S D V + GN++
Sbjct: 515 GHVYAIDIKTGKKLWEF------------KAEDTVWGLSIKDDI----VVLGCGNIFESI 558
Query: 115 LHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWY 174
+ ++ + I E ++ ALD++TG+ +W ++ +
Sbjct: 559 VMLKNGK--------------ILEEGYA---YALDINTGREIWRSKIKHDVRSLSIKDDI 601
Query: 175 LNPNCPPGPSPDADFGEAPMM--------LSMYRNKVKHDIVVAVQKSGFAWALDRDSGS 226
+ C G D M+ S+ +K+DI++ + +ALD D+G
Sbjct: 602 VVLGCKKGYILALDINAGNMLWEFKAKSGKSIRNLSIKNDILL-FGCDNYLYALDIDTGR 660
Query: 227 LIWSMEAGPG-------------GLGGGAMW--GAATDERRIYTNIANSQHKNFNLKPSK 271
+W +A G GG ++ T E+ + S + L
Sbjct: 661 ELWRFKAEGEVKSLSIKKDNVLLGCRGGYVYLLDINTGEKMERFKVVGSVLR---LSIKD 717
Query: 272 NSTIAGG----WVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMD 327
+ I G A+D + G LW A ++G G + VL G Y +YA+D
Sbjct: 718 DIVILGCNRECVYALDINAGENLW--AFKTDGDVNGLSIKNDAVLLGCDNY----LYALD 771
Query: 328 VKTGKILWSYDTGATIYGGASVSNGCI 354
+ TG+ +W + T + + + N I
Sbjct: 772 INTGEEIWKFKTESAVLDLSIKDNIVI 798
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 321 GPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359
G +YA+D+KTGK LW + T++ G S+ + + +G G
Sbjct: 515 GHVYAIDIKTGKKLWEFKAEDTVW-GLSIKDDIVVLGCG 552
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340
A+D GN +W N N V+ YR G + +DV TG +W G
Sbjct: 116 ALDIKTGNKIWEYKVEHN--VDSLFIKDNIVML---EYRGGHVCVLDVMTGDKIWESKVG 170
Query: 341 ATIYGGASVSNGCIYMGNGYK 361
++ G S+ + + +G+G K
Sbjct: 171 ERMW-GFSLKDNIVILGDGDK 190
>sp|Q9KTW8|BAMB_VIBCH Outer membrane protein assembly factor BamB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=bamB PE=3 SV=1
Length = 386
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 281 AMDASNGNVLWSTADPSNGTA--PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338
A+D NG V+W+T G+A G +T A G LF GS G + A+D +TG+ LW+
Sbjct: 81 ALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGS--ENGVVNALDAETGEPLWASA 138
Query: 339 TGATIYGGASVSNGCIYMGNGYKVTVGFGNKN 370
+ + N + + + ++
Sbjct: 139 IEGEVLAAPAADNNIVIVNTSRGALIALNQED 170
>sp|F8GAQ8|BAMB_FRAST Outer membrane protein assembly factor BamB OS=Francisella sp.
(strain TX077308) GN=bamB PE=3 SV=1
Length = 521
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 256 NIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGG 315
N++ + N P++N G + ++G ++W D + P T+AN V+FG
Sbjct: 60 NVSPTYANNTVFVPNQNGVAYG----LSITDGKIVWK-HDTGTILSSQPNTIANAVIFGS 114
Query: 316 STYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIY 355
+G + A+D K GKILW D ++I+ ++ + +Y
Sbjct: 115 ---VKGVLTAVDQKDGKILWRTDAPSSIFSQPTIYSNHLY 151
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 195 MLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL---------------- 238
+LS N + + ++ K G A+D+ G ++W +A P +
Sbjct: 98 ILSSQPNTIANAVIFGSVK-GVLTAVDQKDGKILWRTDA-PSSIFSQPTIYSNHLYTHTH 155
Query: 239 GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN 298
G AT+ +++ N+ N+ + L + I V + ++ G VL T + +
Sbjct: 156 DGSVTSFDATNGSKVW-NVTNNIPE-ITLPSDSSPIILNDTVMVGSAFGTVLGFTLESGD 213
Query: 299 GTAPGPVTVANG--------------VLFGGSTYR---QGPIYAMDVKTGKILWSYDTGA 341
T PV +A+G +L+G QG I A+D TGK+LW+ A
Sbjct: 214 RTINLPVAIAHGSSPADKMVDITANPMLYGNYLIFAAFQGAIVALDKDTGKMLWA--KKA 271
Query: 342 TIYGGASVSNGCIY 355
+I +++NG I+
Sbjct: 272 SIINNMAINNGVIF 285
>sp|Q4W6G0|QGDA_PSEPU Quinohemoprotein alcohol dehydrogenase ADH-IIG OS=Pseudomonas
putida GN=qgdA PE=1 SV=1
Length = 718
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPV---TVANGV-LFGGSTY---RQGPIYAMDVKTGKI 333
A+DA +G ++W S+ G V GV ++ G Y G + A+D KTG+
Sbjct: 113 ALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQR 172
Query: 334 LWSYDTGA------TIYGGASVSNGCIYMGNG 359
WS DT A TI G V NG + +GNG
Sbjct: 173 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNG 204
Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 68/252 (26%)
Query: 1 AVKRSNGKLVWKTKLD-DHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ G+ W DH RS+ IT + G +G E G+ +G +
Sbjct: 164 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV--------RGYVT 215
Query: 59 KLDAKTGRILWQTFMLPDN-----------------FGK--LNEYAGAAIWGSSPSIDPI 99
DA+TG+ W+ + +P + FG + + G W S + DP
Sbjct: 216 AYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSF-AYDPE 274
Query: 100 RNHVYIATGN--LYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVW 157
N +YI GN L+ P Q + +N +S++A++ DTG+ VW
Sbjct: 275 LNLLYIGVGNGSLWD-PKWRSQAKGDNL---------------FLSSIVAVNADTGEYVW 318
Query: 158 YKQLGGYDVW-FGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGF 216
+ Q D W + A + P P +AP K+GF
Sbjct: 319 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-------------------KNGF 359
Query: 217 AWALDRDSGSLI 228
+ +DR +G L+
Sbjct: 360 FYVIDRATGELL 371
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 308 ANGVLFGGSTYRQGP---IYAMDVKTGKILWSYDTGA-----------TIYGGASVSNGC 353
A ++ G+ Y GP +YA+D + G+++W YD + + G +V G
Sbjct: 93 ATPIVVDGAMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGK 152
Query: 354 IYMG 357
+Y+G
Sbjct: 153 VYVG 156
>sp|P18278|DHET_ACEAC Methanol dehydrogenase [cytochrome c] OS=Acetobacter aceti GN=adhA
PE=1 SV=1
Length = 742
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 59/200 (29%)
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYA------------------------GAAI 89
+G ++ DA+TG++ W+ + +P+N + + A G +
Sbjct: 220 RGFVSAFDAETGKLKWRFYTVPNNKNEPDHAASDNILMNKAYKTWGPKGAWVRQGGGGTV 279
Query: 90 WGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALD 149
W S DP+ + +Y+A GN P + + E I S++AL
Sbjct: 280 W-DSLVYDPVSDLIYLAVGN--GSPWNYKYRSE------------GIGSNLFLGSIVALK 324
Query: 150 LDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM-YRNKVKHDIV 208
+TG+ VW+ Q D W D + M L M + +++H ++
Sbjct: 325 PETGEYVWHFQATPMDQW------------------DYTSVQQIMTLDMPVKGEMRH-VI 365
Query: 209 VAVQKSGFAWALDRDSGSLI 228
V K+GF + LD +G +
Sbjct: 366 VHAPKNGFFYVLDAKTGEFL 385
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 33/117 (28%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVA-------------NGVLFGGSTYRQGPIYAMD 327
A+DA+ G +LW DP PG + NG +F G+ G + A D
Sbjct: 117 ALDAATGKLLWQY-DPK---VPGNIADKGCCDTVNRGAGYWNGKVFWGTF--DGRLVAAD 170
Query: 328 VKTGKILWSYDT-----------GATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373
KTGK +W+ +T T+ G V+ G + +GNG FG + F S
Sbjct: 171 AKTGKKVWAVNTIPADASLGKQRSYTVDGAVRVAKGLVLIGNG---GAEFGARGFVS 224
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 274 TIAGGWVAMDASNGNVLWST----ADPSNG-----TAPGPVTVANGVLF---GGSTY-RQ 320
T G VA DA G +W+ AD S G T G V VA G++ GG+ + +
Sbjct: 161 TFDGRLVAADAKTGKKVWAVNTIPADASLGKQRSYTVDGAVRVAKGLVLIGNGGAEFGAR 220
Query: 321 GPIYAMDVKTGKILWSYDT 339
G + A D +TGK+ W + T
Sbjct: 221 GFVSAFDAETGKLKWRFYT 239
>sp|Q934G0|LUH_PSESP Lupanine 17-hydroxylase [cytochrome c] OS=Pseudomonas sp. GN=luh
PE=1 SV=1
Length = 695
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 90/414 (21%), Positives = 140/414 (33%), Gaps = 115/414 (27%)
Query: 1 AVKRSNGKLVWKTK-LDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
AV R+ KL W ++ D IT + G ++G +S + G +G L
Sbjct: 154 AVSRTTHKLTWSSQSCDPKKMQAITGAPRVGGGKVFIGNASGDFGGD-------RGHLDA 206
Query: 60 LDAKTGRILWQTFMLP---------DNFGKLNEYAGAAIW-----GSSP----SIDPIRN 101
DAKTG+ LW+ + +P D K ++ G W G SP + D +
Sbjct: 207 FDAKTGKHLWRFYTMPGDPSKPFENDLLAKASKTWGTDYWKYTKGGVSPWDAITYDEASD 266
Query: 102 HVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161
+Y T Q P + D+ S+S++A+D TG W+ Q
Sbjct: 267 TLYFGTDG---------PSPWSPAQRAPDAGDELF-----SHSIIAVDASTGAYKWHFQT 312
Query: 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221
D + ++ M+ + V +V+ K+G+ + LD
Sbjct: 313 VQNDGSNMSATMHI------------------MLADLPVEGVSKRVVMTAPKNGYFYVLD 354
Query: 222 RDSGSLI---------WSMEAGPG------------------------GLGGGAMWGAAT 248
+G I W+ P G GG W A
Sbjct: 355 ASTGKFISADHYVPVNWTKGLDPKTGRPIPSNEANYWERPGEMTIPLPGDVGGHNWEAMA 414
Query: 249 ---DERRIY--------TNIANSQHKNFNL------KPSKNSTIAGGWVAMDASNGNVLW 291
+ R +Y T +A+ +L +P G VA D W
Sbjct: 415 YNPELRTVYIPSTLVPVTVVASKDTGELDLDYYYGMRPDATIKTQGDLVAWDPLLQKEKW 474
Query: 292 STAD--PSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATI 343
P NG G + A G++F G+ G A D TG+ LWS+ G +I
Sbjct: 475 RAKRSLPVNG---GVLATAGGLVFQGTG--DGHFEAFDANTGEKLWSFHVGGSI 523
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 307 VANGVLFGGSTYRQGPIYAMDVKTGKILWSY--------DTGATIYGGASVSNGC 353
VA+GV++ G G IYA D+KTGK LW+Y DT T + G V+ G
Sbjct: 85 VADGVIYQGGP--PGKIYANDLKTGKNLWTYTPEVQYDKDTSWTGFWGTHVNRGL 137
>sp|A8R3S4|QEDH_PSEPU Quinoprotein ethanol dehydrogenase OS=Pseudomonas putida GN=qedA
PE=1 SV=1
Length = 623
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 96/267 (35%), Gaps = 79/267 (29%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYY--------KGAYYVGTSSIEEGLTFELCCT 52
A+ + GK+VW K DH+ + TM+G K G+S E G+
Sbjct: 165 ALNKDTGKVVWNKKFGDHSAGY-TMTGAPTLIKDQKSGKVLLIHGSSGDEFGVV------ 217
Query: 53 FQGSLAKLDAKTGRILWQTFMLPDNFGKLN-----------------------------E 83
G L D +TG +W + + G+LN
Sbjct: 218 --GQLYARDPETGEEVWMRPFVEGHMGRLNGKDSTPTGDVKAPSWPDDPTTETGKVESWS 275
Query: 84 YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSN 143
+ G A W S+ S DP N + + GN R ++ N P D +++
Sbjct: 276 HGGGAPWQSA-SFDPETNTIIVGAGNPGPWNTWARTSKDGN----PHDFDSL-----YTS 325
Query: 144 SLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF-GEAPMMLSMYRNK 202
+ +D TG++ W+ Q D W DF G ++L Y++K
Sbjct: 326 GQVGVDPTTGEVKWFYQHTPNDAW--------------------DFSGNNELVLFDYKDK 365
Query: 203 --VKHDIVVAVQKSGFAWALDRDSGSL 227
++ ++GF + +DR +G L
Sbjct: 366 DGKQYKATAHADRNGFFYVVDRTNGKL 392
>sp|P28036|DHET_ACEPO Alcohol dehydrogenase [cytochrome c] OS=Acetobacter polyoxogenes
GN=adhA PE=1 SV=1
Length = 738
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 71/258 (27%)
Query: 1 AVKRSNGKLVW-------KTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
A+ GKLVW + +L + + KG +G E G
Sbjct: 169 ALDAKTGKLVWSVNTIPPEAELGKQRSYTVDGAPRIAKGRVIIGNGGSEFGA-------- 220
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGK-----------------------LNEYAGAAIW 90
+G ++ DA+TG++ W+ F +P+ + + G +W
Sbjct: 221 RGFVSAFDAETGKVDWRFFTVPNPKNEPDAASDSVLMNKAYQTWSPTGAWTRQGGGGTVW 280
Query: 91 GSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDL 150
S DP+ + VY+ GN P + + E S++AL
Sbjct: 281 -DSIVYDPVADLVYLGVGN--GSPWNYKYRSEGKGDNL------------FLGSIVALKP 325
Query: 151 DTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVA 210
+TG+ VW+ Q D W D + M L + N ++V
Sbjct: 326 ETGEYVWHFQETPMDQW------------------DFTSDQQIMTLDLPINGETRHVIVH 367
Query: 211 VQKSGFAWALDRDSGSLI 228
+K+GF + +D +G I
Sbjct: 368 ARKNGFFYIIDAKTGEFI 385
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 29/115 (25%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPV-------TVANGVLF-GGSTYR---QGPIYAMDVK 329
A+DA+ G +LWS DP PG + TV G + G Y G + A+D K
Sbjct: 118 AVDAATGKLLWSY-DPR---VPGNIADKGCCDTVNRGAAYWNGKVYFGTFDGRLIALDAK 173
Query: 330 TGKILWSYDT-----------GATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373
TGK++WS +T T+ G ++ G + +GNG FG + F S
Sbjct: 174 TGKLVWSVNTIPPEAELGKQRSYTVDGAPRIAKGRVIIGNGGSE---FGARGFVS 225
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 23/93 (24%)
Query: 1 AVKRSNGKLVWKTK-------LDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
AV + GKL+W D + Y+ G Y GT F
Sbjct: 118 AVDAATGKLLWSYDPRVPGNIADKGCCDTVNRGAAYWNGKVYFGT--------------F 163
Query: 54 QGSLAKLDAKTGRILWQTFMLPD--NFGKLNEY 84
G L LDAKTG+++W +P GK Y
Sbjct: 164 DGRLIALDAKTGKLVWSVNTIPPEAELGKQRSY 196
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 274 TIAGGWVAMDASNGNVLWS----------------TADPSNGTAPGPVTVANGVLFGGST 317
T G +A+DA G ++WS T D + A G V + NG G
Sbjct: 162 TFDGRLIALDAKTGKLVWSVNTIPPEAELGKQRSYTVDGAPRIAKGRVIIGNG---GSEF 218
Query: 318 YRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKV 362
+G + A D +TGK+ W + T ++ + M Y+
Sbjct: 219 GARGFVSAFDAETGKVDWRFFTVPNPKNEPDAASDSVLMNKAYQT 263
>sp|P29968|XOXF_PARDE Putative dehydrogenase XoxF OS=Paracoccus denitrificans GN=xoxF
PE=3 SV=2
Length = 600
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 75/264 (28%)
Query: 1 AVKRSNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ ++G++ W TK+ D +T + K VG S E G+ +G +
Sbjct: 150 ALDATSGEVKWSTKIGDPGIGETLTATVVPVKDKVLVGISGGEYGV--------RGRMTA 201
Query: 60 LDAKTGRILWQTF-------MLPD-----NFGK-------LN-------EYAGAAIWGSS 93
L+ G W+ + +L D + GK LN + G IWG
Sbjct: 202 LNLTDGSEAWKAWSTGPDEELLVDPETTTHLGKPIGADSSLNSWEGDQWQIGGGTIWGWF 261
Query: 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLD 151
S DP N VY TGN P++ + P ++ S +++A D D
Sbjct: 262 -SYDPDLNLVYYGTGN-------------------PSTWNPSQRPGDNKWSMTIMARDAD 301
Query: 152 TGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211
TG W+ Q+ +D W D D ++ + + + ++
Sbjct: 302 TGMAKWFYQMTPHDEW------------------DYDGVNEMILTNQTVDGQERKLLTHF 343
Query: 212 QKSGFAWALDRDSGSLIWSMEAGP 235
++G A+ +DR++G L+ + + P
Sbjct: 344 DRNGLAYTMDRETGELLVAEKYDP 367
>sp|Q44002|DHET_ACEEU Alcohol dehydrogenase [cytochrome c] OS=Acetobacter europaeus
GN=adh PE=3 SV=1
Length = 739
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 87/259 (33%), Gaps = 72/259 (27%)
Query: 1 AVKRSNGKLVW-------KTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
A+ GKLVW + +L + + KG +G E G
Sbjct: 169 ALDAKTGKLVWSVNTIPPEAELGKQRSYTVDGAPRIAKGRVIIGNGGSEFGA-------- 220
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYA------------------------GAAI 89
+G + DA+TG++ W+ F P+ + + A G +
Sbjct: 221 RGFVTAFDAETGKVDWRFFTAPNPKNEPDHTASDSVLMNKAYQTWSPTGAWTRQGGGGTV 280
Query: 90 WGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALD 149
W S DP+ + VY+ GN P + + E S++AL
Sbjct: 281 W-DSIVYDPVADLVYLGVGN--GSPWNYKYRSEGKGDNL------------FLGSIVALK 325
Query: 150 LDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVV 209
+TG+ VW+ Q D W D + M L + N ++V
Sbjct: 326 PETGEYVWHFQETPMDQW------------------DFTSVQQIMTLDLPINGETRHVIV 367
Query: 210 AVQKSGFAWALDRDSGSLI 228
K+GF + +D +G I
Sbjct: 368 HAPKNGFFYIIDAKTGEFI 386
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPV-------TVANGVLF-GGSTYR---QGPIYAMDVK 329
A+DA+ G +LWS DP PG + TV G + G Y G + A+D K
Sbjct: 118 AVDAATGKLLWSY-DPR---VPGNIADKGCCDTVNRGAAYWNGKVYFGTFDGRLIALDAK 173
Query: 330 TGKILWSYDT-----------GATIYGGASVSNGCIYMGNG 359
TGK++WS +T T+ G ++ G + +GNG
Sbjct: 174 TGKLVWSVNTIPPEAELGKQRSYTVDGAPRIAKGRVIIGNG 214
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 23/93 (24%)
Query: 1 AVKRSNGKLVWKTK-------LDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
AV + GKL+W D + Y+ G Y GT F
Sbjct: 118 AVDAATGKLLWSYDPRVPGNIADKGCCDTVNRGAAYWNGKVYFGT--------------F 163
Query: 54 QGSLAKLDAKTGRILWQTFMLPD--NFGKLNEY 84
G L LDAKTG+++W +P GK Y
Sbjct: 164 DGRLIALDAKTGKLVWSVNTIPPEAELGKQRSY 196
>sp|Q5RG49|ACSF4_DANRE Acyl-CoA synthetase family member 4 OS=Danio rerio GN=aasdh PE=3
SV=1
Length = 1149
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340
A+D S G V+W + ++ G++ G RQ +Y +DV G +W+++TG
Sbjct: 828 ALDLSRGEVIWERILGDRLESSAAISSCGGLVAIGCYDRQ--MYFLDVSCGDTVWTFETG 885
Query: 341 ATIYGGASV--SNGCIYMGN 358
+ +V G ++ G+
Sbjct: 886 DVVKSSPTVDPKTGLVFAGS 905
>sp|P27175|DHG_GLUOX Quinoprotein glucose dehydrogenase OS=Gluconobacter oxydans (strain
621H) GN=gdh PE=3 SV=2
Length = 808
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 133 DKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEA 192
D+ + E + ++AL+ DTGK+ W+ Q +D+W D D
Sbjct: 435 DRTKDSERFAPGIVALNADTGKLAWFYQTVHHDLW------------------DMDVPSQ 476
Query: 193 PMMLSM-YRNKVKHDIVVAVQKSGFAWALDRDSGSLI 228
P ++ + ++ + A K+G + LDR +G I
Sbjct: 477 PSLVDVTQKDGTLVPAIYAPTKTGDIFVLDRRTGKEI 513
>sp|Q70JN9|SLDA_GLUOX Glycerol dehydrogenase large subunit OS=Gluconobacter oxydans
(strain 621H) GN=sldA PE=3 SV=1
Length = 743
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 291 WSTADPSNGTAPGPVTVANGVLF-GGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349
W P+NG G V A GV+F +T Q I A+D TGK++WS A + GG
Sbjct: 652 WEIGTPNNG---GSVVTAGGVVFIAAATDNQ--IRAIDEHTGKVVWS----AVLPGGGQ- 701
Query: 350 SNGCIYMGNGYK-VTVGFGNKNF 371
+N Y NG++ V + G +F
Sbjct: 702 ANPMTYEANGHQYVAIMAGGHHF 724
>sp|P16027|DHM1_METEA Methanol dehydrogenase [cytochrome c] subunit 1 OS=Methylobacterium
extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=moxF
PE=1 SV=1
Length = 626
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 76/258 (29%)
Query: 1 AVKRSNGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ G+ VWK + D S +T++ K +G+S E G+ +G L
Sbjct: 162 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV--------RGYLTA 213
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEYAGAAIWGSSP----------------- 94
D KTG +W+ + +L +F N + G G+
Sbjct: 214 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY 273
Query: 95 SIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDT 152
+ DP N +Y TGN P ++ + P ++ + ++ D DT
Sbjct: 274 AYDPGTNLIYFGTGN-------------------PAPWNETMRPGDNKWTMTIFGRDADT 314
Query: 153 GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK--VKHDIVVA 210
G+ + Q +D W A G MMLS ++K ++
Sbjct: 315 GEAKFGYQKTPHDEWDYA-------------------GVNVMMLSEQKDKDGKARKLLTH 355
Query: 211 VQKSGFAWALDRDSGSLI 228
++G + LDR G+L+
Sbjct: 356 PDRNGIVYTLDRTDGALV 373
>sp|Q8KIL1|SLDA_GLUTH Glycerol dehydrogenase large subunit OS=Gluconobacter thailandicus
GN=sldA PE=1 SV=2
Length = 740
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 291 WSTADPSNGTAPGPVTVANGVLF-GGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349
W P+NG G V G++F G +T Q I A+D TGK++WS A + GG
Sbjct: 648 WEIGTPNNG---GSVVTGGGLIFIGAATDNQ--IRAIDEHTGKVVWS----AVLPGGGQ- 697
Query: 350 SNGCIYMGNGYK-VTVGFGNKNF 371
+N Y NG++ V + G +F
Sbjct: 698 ANPMTYEANGHQYVAIMAGGHHF 720
>sp|Q9Z4J7|EXAA_PSEAE Quinoprotein ethanol dehydrogenase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=exaA PE=1 SV=1
Length = 623
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340
AMD +G V+W + A G + A ++F G+ G A D K+GK LW + TG
Sbjct: 504 AMDPVSGKVVWEHKEHLPLWA-GVLATAGNLVFTGTG--DGYFKAFDAKSGKELWKFQTG 560
Query: 341 ATIYGGASV--SNGCIYMGNGYKVTVGFG 367
+ I +G Y+G VTVG+G
Sbjct: 561 SGIVSPPITWEQDGEQYLG----VTVGYG 585
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-------ITMSGTYYKGAYYVGTSSIEEGLTFELCCTF 53
A+ ++ GK+VWK K DH + I G K G+S E G+
Sbjct: 165 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVV------- 217
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLN 82
G L D TG +W + + G+LN
Sbjct: 218 -GRLFARDPDTGEEIWMRPFVEGHMGRLN 245
>sp|F7XXL0|BAMB_MOREP Outer membrane protein assembly factor BamB OS=Moranella endobia
(strain PCIT) GN=bamB PE=3 SV=1
Length = 388
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 96/272 (35%), Gaps = 53/272 (19%)
Query: 129 PTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188
PT + + N + ALD D+GK +W K L Y F
Sbjct: 61 PTVQNTRVFVANRYGLVKALDADSGKELWAKDLSIYTGCFSR------------------ 102
Query: 189 FGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAG-----PGGLGGGAM 243
P LS V + I VA + + +A++ GSL W + P + G +
Sbjct: 103 --NRPAQLSGGVTAVGNRIYVASELAK-VYAMEAKCGSLAWEVLVAGETLSPPVVSDGVI 159
Query: 244 WGAATDERRIYTNIA--------NSQHKNFNLKPSKNSTIAGGWVAMDASN--------- 286
++ N A N + K N++ T A G + + N
Sbjct: 160 LIHTSNGMLQALNEADGALKWTVNLEAKMLNIRGGSTPTTACGTAIVGSDNGLVSAVMLN 219
Query: 287 -GNVLWSTADPSNGTAPGPVTV----ANGVLFGGSTYR---QGPIYAMDVKTGKILWSYD 338
G ++W G + A V+ G Y G + A+D+ +GK++WS +
Sbjct: 220 IGQIIWQQRISQTGGVTEIARINDVQATPVVVNGYVYALAYNGNLAALDLFSGKLMWSRE 279
Query: 339 TGATIYGGASVSNGCIYMGNGYKVTVGFGNKN 370
G+ + V NG IY+ + + KN
Sbjct: 280 IGS--FTNMLVENGIIYLVDQNDRVIAVDAKN 309
>sp|P96218|GLTB_MYCTU Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis
GN=gltB PE=1 SV=3
Length = 1527
Score = 33.5 bits (75), Expect = 2.6, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 276 AGGWVAMDASNGNVLWSTAD--PSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI 333
A +V S G ++ +D P + A + N +LFG ++ G +Y V G+
Sbjct: 1329 ANDYVGKGLSGGRIVVRPSDDAPQDYVAEDNIIGGNVILFGATS---GEVYLRGV-VGER 1384
Query: 334 LWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTS 376
++GA +GC YM G V +G +NF +G S
Sbjct: 1385 FAVRNSGAHAVVEGVGDHGCEYMTGGRVVILGRTGRNFAAGMS 1427
>sp|F5ZAY7|BAMB_ALTSS Outer membrane protein assembly factor BamB OS=Alteromonas sp.
(strain SN2) GN=bamB PE=3 SV=2
Length = 418
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 277 GGWVAMDASNGNVLW--------------STADPSNGTAP---GPVTVANGVLFGGSTYR 319
G VAM+ NG+VLW S A A G ++VA+ +LF G+
Sbjct: 91 GSVVAMNPENGDVLWERDFAVFEGDGWWDSIARLWRSGASARIGGISVADRLLFVGT--E 148
Query: 320 QGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNK 369
G + A+D +TG+ W + S G + + G GF +
Sbjct: 149 NGVVMALDYETGETKWEASVPGEVLAAPSADEGILVVNTGAGTLFGFDTR 198
>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense
GN=gltB PE=1 SV=1
Length = 1515
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 307 VANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGF 366
+ N VL+G + G ++A + G+ ++GAT+ SNGC YM G V +G
Sbjct: 1359 IGNTVLYGATA---GKLFAAG-QAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGR 1414
Query: 367 GNKNFTSGTS 376
NF +G +
Sbjct: 1415 VGDNFAAGMT 1424
>sp|Q9HXJ7|BAMB_PSEAE Outer membrane protein assembly factor BamB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=bamB PE=3 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 276 AGGWVAMDASNGNVLWS--TADPSNGTAPGPVT-VANGVLFGGSTYR----QGPIYAMDV 328
+G VA+D G +W A P + V + G+L G T QG A+DV
Sbjct: 200 SGKVVAVDVQRGLPIWEQRVAIPQGRSELDRVVDIDGGLLLSGDTLYVVSYQGRAAALDV 259
Query: 329 KTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373
+G++LW + A+ Y G + G IY+ G ++ +S
Sbjct: 260 NSGRLLWQRE--ASSYVGVAEGFGNIYVSQASGSVEGLDSRGASS 302
>sp|P54742|AFSK_STRGR Serine/threonine-protein kinase AfsK OS=Streptomyces griseus
GN=afsK PE=3 SV=1
Length = 807
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 280 VAMDASNGNVLWSTADPS-----NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKIL 334
+A++ +G V W P+ APGP GV G +YA+D TGK
Sbjct: 626 LAVETGSGPVRWHFEAPAVFLSPPAFAPGPAVTGGGVYLADYL---GTVYALDATTGKDR 682
Query: 335 WSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380
W T A +S+ V V GN + SG++LY
Sbjct: 683 WRIATEAR----SSIE----------PVLVAVGNVHVGSGSALYTL 714
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 272 NSTIAGGWVAMDASNGNVLWST--ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVK 329
+T GG +ASNG LW A TA + +G ++ ++ + A+D +
Sbjct: 530 TATRGGGVQGWEASNGEKLWEVTGAQSDFETAEAGPVIHDGTVY---LWQDARLRALDAR 586
Query: 330 TGKILWSYDTG-ATIYGGASV-----SNGCIYMGNGYKV 362
TG WSY G A GG V ++G +Y+ G +V
Sbjct: 587 TGLERWSYPIGDAASCGGVPVRVTPATDGYVYVAAGTRV 625
>sp|A8EWV0|MNMG_ARCB4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Arcobacter butzleri (strain RM4018) GN=mnmG PE=3 SV=1
Length = 625
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 VKRSNGKLVWKTKLDDH--ARSFITMSGTYYKGAYYVGTSSIEEGLTFEL-CCTFQGSLA 58
VK N KTKL + A+ + +GT+ +G ++G + E G +EL T L
Sbjct: 126 VKNDNEVCGVKTKLTEEFIAKKVVLTTGTFMRGLVHIGENKYEAGRAWELPSTTLSTQLK 185
Query: 59 KLDAKTGRI 67
+L + GR+
Sbjct: 186 ELGLRVGRL 194
>sp|P49596|PP2C2_CAEEL Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans
GN=T23F11.1 PE=3 SV=2
Length = 356
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 240 GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTI-----AGGWVAMDASNGNVLWSTA 294
G G A D R + + + ++ +F+ KPS + AGGWV + NGN+ S A
Sbjct: 127 GDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGGWVEFNRVNGNLALSRA 186
>sp|Q88QT7|APAG_PSEPK Protein ApaG OS=Pseudomonas putida (strain KT2440) GN=apaG PE=3
SV=1
Length = 126
Score = 32.0 bits (71), Expect = 8.7, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 64 TGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVY 104
+ ++L + +++ + G++ E GA + G P+IDP ++H Y
Sbjct: 43 SAKLLSRHWLITNGDGEVEEVRGAGVVGQQPNIDPGQSHTY 83
>sp|A5VXJ4|APAG_PSEP1 Protein ApaG OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=apaG PE=3 SV=1
Length = 126
Score = 32.0 bits (71), Expect = 8.7, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 64 TGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVY 104
+ ++L + +++ + G++ E GA + G P+IDP ++H Y
Sbjct: 43 SAKLLSRHWLITNGDGEVEEVRGAGVVGQQPNIDPGQSHTY 83
>sp|C7R5S3|BAMB_KANKD Outer membrane protein assembly factor BamB OS=Kangiella koreensis
(strain DSM 16069 / KCTC 12182 / SW-125) GN=bamB PE=3
SV=1
Length = 388
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 275 IAGGWVAMDASNGNVLWSTADPSNGTAP--GPVTVANGVLFGGSTYRQGPIYAMDVKTGK 332
+ G A D +G V+W T N P G VT G++ G+ + ++ +DV GK
Sbjct: 75 VDGLITAFDIKSGKVIWET----NLKQPLSGGVTANAGLVAVGT--KNAQVHVLDVNDGK 128
Query: 333 ILWSYDTGATIYGGASVSNGCIYM 356
LW + + ++S+G + +
Sbjct: 129 QLWHVNVTTEVLAKPAISDGRLVV 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,609,028
Number of Sequences: 539616
Number of extensions: 7559967
Number of successful extensions: 16075
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 15755
Number of HSP's gapped (non-prelim): 322
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)