BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040697
MLRIDIGSLSYEKASYSRGFSKSFGEIFYTSNYGTLQLTNGLASTPQMGGILDYSGVWCT
F

High Scoring Gene Products

Symbol, full name Information P value
AT3G56310 protein from Arabidopsis thaliana 2.3e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040697
        (61 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2078416 - symbol:AT3G56310 species:3702 "Arabi...   108  2.3e-05   1


>TAIR|locus:2078416 [details] [associations]
            symbol:AT3G56310 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0004553
            "hydrolase activity, hydrolyzing O-glycosyl compounds"
            evidence=IEA] [GO:0004557 "alpha-galactosidase activity"
            evidence=ISS;IBA] [GO:0005576 "extracellular region" evidence=ISM]
            [GO:0005975 "carbohydrate metabolic process" evidence=IEA]
            [GO:0009311 "oligosaccharide metabolic process" evidence=IBA]
            [GO:0009505 "plant-type cell wall" evidence=IBA] [GO:0016139
            "glycoside catabolic process" evidence=IBA] [GO:0046477
            "glycosylceramide catabolic process" evidence=IBA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0006869 "lipid transport" evidence=RCA]
            [GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
            [GO:0007165 "signal transduction" evidence=RCA] [GO:0009755
            "hormone-mediated signaling pathway" evidence=RCA] [GO:0010351
            "lithium ion transport" evidence=RCA] [GO:0016558 "protein import
            into peroxisome matrix" evidence=RCA] [GO:0048767 "root hair
            elongation" evidence=RCA] InterPro:IPR000111 InterPro:IPR002241
            InterPro:IPR013785 Pfam:PF02065 PRINTS:PR00740 PROSITE:PS00512
            InterPro:IPR013780 GO:GO:0005773 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:3.20.20.70 GO:GO:0043169
            InterPro:IPR017853 SUPFAM:SSF51445 Gene3D:2.60.40.1180
            GO:GO:0016023 GO:GO:0009505 GO:GO:0004557 CAZy:GH27 eggNOG:NOG68897
            HOGENOM:HOG000161224 KO:K07407 GO:GO:0016139 GO:GO:0046477
            GO:GO:0009311 OMA:ACNINET ProtClustDB:PLN02229 UniGene:At.23883
            UniGene:At.71191 HSSP:Q9FXT4 EMBL:AY074321 EMBL:AY114020
            IPI:IPI00547799 RefSeq:NP_191190.2 ProteinModelPortal:Q8VXZ7
            SMR:Q8VXZ7 STRING:Q8VXZ7 PaxDb:Q8VXZ7 PRIDE:Q8VXZ7
            EnsemblPlants:AT3G56310.1 GeneID:824798 KEGG:ath:AT3G56310
            TAIR:At3g56310 InParanoid:Q8VXZ7 PhylomeDB:Q8VXZ7
            ArrayExpress:Q8VXZ7 Genevestigator:Q8VXZ7 Uniprot:Q8VXZ7
        Length = 437

 Score = 108 (43.1 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 22/30 (73%), Positives = 23/30 (76%)

Query:    20 FSKSFGEIFYTSNYGTLQLTNGLASTPQMG 49
             FSKSF  I+ TS YG LQL NGLA TPQMG
Sbjct:    47 FSKSFNSIYDTSMYGRLQLNNGLARTPQMG 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        61   0.00091  102 3  11 22  0.39    28
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  492 (52 KB)
  Total size of DFA:  84 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.55u 0.12s 6.67t   Elapsed:  00:00:01
  Total cpu time:  6.55u 0.12s 6.67t   Elapsed:  00:00:01
  Start:  Sat May 11 07:40:51 2013   End:  Sat May 11 07:40:52 2013

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