BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040697
(61 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVW 90
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVW 89
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVW 90
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVW 90
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVW 90
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVW 90
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVW 89
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVW 89
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 GTLQLTNGLASTPQMGGILDYSGVW 58
GT+ +T G +PQ GG + GVW
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVW 89
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 38 LTNGLASTPQMGGILDYSGVW 58
+TNG + P GG+ DY+ +W
Sbjct: 235 VTNGYSWYPLQGGMQDYNYIW 255
>pdb|3BB7|A Chain A, Structure Of Prevotella Intermedia Prointerpain A Fragment
39-359 (Mutant C154a)
Length = 321
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 5 DIGSLSYEKASYSRGFSKSFGEIFYTSNYGTLQLTNGLASTPQMGGILDYSGVWCT 60
D G+ +Y+ A+ +S ++ E + TL L G+AS Q GG + SG + T
Sbjct: 155 DFGNTTYDWANMKDNYSGNYTEA-EANAVATLMLHCGVASEMQYGGPNEGSGAYMT 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,886,647
Number of Sequences: 62578
Number of extensions: 57002
Number of successful extensions: 113
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 14
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)