Query 040697
Match_columns 61
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 17:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4do4_A Alpha-N-acetylgalactosa 98.8 3.2E-10 1.1E-14 78.6 0.1 16 38-53 1-16 (400)
2 3hg3_A Alpha-galactosidase A; 98.1 4.5E-07 1.5E-11 67.5 0.1 17 38-54 1-17 (404)
3 1uas_A Alpha-galactosidase; TI 97.8 2.5E-06 8.5E-11 60.0 0.1 17 38-54 1-17 (362)
4 3lrk_A Alpha-galactosidase 1; 97.6 1E-05 3.5E-10 62.0 0.1 21 34-54 18-38 (479)
5 1szn_A Alpha-galactosidase; (b 97.6 1.1E-05 3.8E-10 58.8 0.0 17 37-53 2-19 (417)
6 3a5v_A Alpha-galactosidase; be 97.4 2E-05 7E-10 56.8 0.0 16 39-54 2-17 (397)
7 3cc1_A BH1870 protein, putativ 97.3 3.3E-05 1.1E-09 56.2 -0.2 18 36-53 2-19 (433)
8 3a21_A Putative secreted alpha 95.4 0.0024 8.1E-08 47.9 -0.2 16 39-54 5-20 (614)
9 2d11_E Na(+)/H(+) exchange reg 63.4 1.4 4.7E-05 23.0 -0.1 10 44-53 12-21 (28)
10 2d10_E Ezrin-radixin-moesin bi 63.0 1.4 4.8E-05 22.9 -0.1 10 44-53 12-21 (28)
11 1zy9_A Alpha-galactosidase; TM 62.1 1.4 4.8E-05 33.4 -0.3 11 42-52 191-201 (564)
12 2xn2_A Alpha-galactosidase; hy 55.1 2.7 9.1E-05 32.8 0.1 11 43-53 330-340 (732)
13 3mi6_A Alpha-galactosidase; NE 45.8 4.5 0.00016 32.3 0.1 12 42-53 326-337 (745)
14 2yfo_A Alpha-galactosidase-suc 45.2 3.5 0.00012 32.1 -0.6 11 43-53 326-336 (720)
15 4fnq_A Alpha-galactosidase AGA 36.1 8 0.00027 30.0 0.1 13 42-54 325-337 (729)
16 1sgh_B Ezrin-radixin-moesin bi 34.4 7.9 0.00027 21.3 -0.1 11 44-54 23-33 (39)
17 2krg_A Na(+)/H(+) exchange reg 27.1 26 0.00089 23.2 1.5 13 43-55 199-211 (216)
18 1xkp_C Chaperone protein YSCB; 27.0 13 0.00046 25.1 0.0 14 40-53 126-139 (143)
19 1lg7_A VSV matrix protein; vir 26.7 24 0.00082 24.7 1.2 21 29-49 85-105 (182)
20 3sd4_A PHD finger protein 20; 25.4 24 0.00083 19.6 0.9 12 48-60 48-59 (69)
21 2iu4_A DHA-DHAQ, dihydroxyacet 24.2 9.9 0.00034 28.2 -1.1 16 33-48 251-266 (336)
22 3ct4_A PTS-dependent dihydroxy 23.6 10 0.00035 28.0 -1.1 16 33-48 254-269 (332)
23 2lju_A Putative oxidoreductase 22.8 28 0.00096 22.0 0.9 9 45-53 47-55 (108)
24 4f1h_A Tyrosyl-DNA phosphodies 22.4 57 0.002 18.5 2.2 18 44-61 231-248 (250)
25 2vt8_A HPI31, PI31, proteasome 22.0 33 0.0011 21.6 1.1 10 44-53 54-63 (153)
26 2w2r_A Matrix protein; viral a 21.7 34 0.0011 24.7 1.2 20 30-49 132-151 (228)
27 2jya_A AGR_C_3324P, uncharacte 21.2 30 0.001 21.8 0.9 11 44-54 38-48 (106)
28 1oi2_A Hypothetical protein YC 21.2 13 0.00043 28.1 -1.1 15 34-48 287-301 (366)
No 1
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=98.84 E-value=3.2e-10 Score=78.61 Aligned_cols=16 Identities=50% Similarity=0.638 Sum_probs=14.9
Q ss_pred ccCCCCCCCCCCCCCC
Q 040697 38 LTNGLASTPQMGGILD 53 (61)
Q Consensus 38 L~NGLG~TPQMGWNS~ 53 (61)
|+||||+||||||||=
T Consensus 1 l~ngla~tPpmGWnSW 16 (400)
T 4do4_A 1 LDNGLLQTPPMGWLAW 16 (400)
T ss_dssp CCSSCCSSCCEEEESH
T ss_pred CCCCcCCCCCCcccch
Confidence 7999999999999993
No 2
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=98.08 E-value=4.5e-07 Score=67.52 Aligned_cols=17 Identities=53% Similarity=0.601 Sum_probs=15.2
Q ss_pred ccCCCCCCCCCCCCCCC
Q 040697 38 LTNGLASTPQMGGILDY 54 (61)
Q Consensus 38 L~NGLG~TPQMGWNS~~ 54 (61)
|+||||+||||||||=+
T Consensus 1 l~ngla~tppmGWnsW~ 17 (404)
T 3hg3_A 1 LDNGLARTPTMGWLHWE 17 (404)
T ss_dssp CCSSCCSSCCEEEESHH
T ss_pred CCCCCCCCCceEEEcHh
Confidence 68999999999999853
No 3
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=97.83 E-value=2.5e-06 Score=60.04 Aligned_cols=17 Identities=47% Similarity=0.487 Sum_probs=15.1
Q ss_pred ccCCCCCCCCCCCCCCC
Q 040697 38 LTNGLASTPQMGGILDY 54 (61)
Q Consensus 38 L~NGLG~TPQMGWNS~~ 54 (61)
|+|||++||||||||=+
T Consensus 1 ~~~~~~~~pp~gwnsW~ 17 (362)
T 1uas_A 1 FENGLGRTPQMGWNSWN 17 (362)
T ss_dssp CCSSCCSSCCEEEESHH
T ss_pred CCCCCCCCCCEEEECHH
Confidence 58999999999999853
No 4
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=97.57 E-value=1e-05 Score=61.97 Aligned_cols=21 Identities=43% Similarity=0.310 Sum_probs=17.4
Q ss_pred cceeccCCCCCCCCCCCCCCC
Q 040697 34 GTLQLTNGLASTPQMGGILDY 54 (61)
Q Consensus 34 rR~LL~NGLG~TPQMGWNS~~ 54 (61)
....++|||++||||||||=+
T Consensus 18 ~~~a~~ngla~tPpmGWNSW~ 38 (479)
T 3lrk_A 18 GVSPSYNGLGLTPQMGWDNWN 38 (479)
T ss_dssp -CCCCSSSCCSSCCEEEESHH
T ss_pred hhhhhhCCCCCCCceEEEchH
Confidence 456789999999999999843
No 5
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=97.56 E-value=1.1e-05 Score=58.84 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.6
Q ss_pred eccCC-CCCCCCCCCCCC
Q 040697 37 QLTNG-LASTPQMGGILD 53 (61)
Q Consensus 37 LL~NG-LG~TPQMGWNS~ 53 (61)
+|+|| |++||||||||=
T Consensus 2 ~~~ng~~~~~ppmgwnsW 19 (417)
T 1szn_A 2 VMPDGVTGKVPSLGWNSW 19 (417)
T ss_dssp CCTTSSTTTSCCEEEESH
T ss_pred cccCCccCCCCCEEEEch
Confidence 68999 999999999984
No 6
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=97.43 E-value=2e-05 Score=56.84 Aligned_cols=16 Identities=56% Similarity=0.511 Sum_probs=14.3
Q ss_pred cCCCCCCCCCCCCCCC
Q 040697 39 TNGLASTPQMGGILDY 54 (61)
Q Consensus 39 ~NGLG~TPQMGWNS~~ 54 (61)
+||||+||||||||=+
T Consensus 2 ~~gla~~pp~gwnsW~ 17 (397)
T 3a5v_A 2 NNGLAITPQMGWNTWN 17 (397)
T ss_dssp CSSCCSSCCEEEESHH
T ss_pred CCCcCCCCCEEEECHH
Confidence 6999999999999853
No 7
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=97.29 E-value=3.3e-05 Score=56.16 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=15.7
Q ss_pred eeccCCCCCCCCCCCCCC
Q 040697 36 LQLTNGLASTPQMGGILD 53 (61)
Q Consensus 36 ~LL~NGLG~TPQMGWNS~ 53 (61)
+-++|||+.||||||||=
T Consensus 2 ~~~~~~~~~~pp~gwnsW 19 (433)
T 3cc1_A 2 MEVNRLSALTPPMGWNSW 19 (433)
T ss_dssp CCCSCBTTBCCCEEEESH
T ss_pred ccccCCCCCCCCEEEECh
Confidence 357899999999999984
No 8
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=95.41 E-value=0.0024 Score=47.89 Aligned_cols=16 Identities=13% Similarity=-0.118 Sum_probs=13.3
Q ss_pred cCCCCCCCCCCCCCCC
Q 040697 39 TNGLASTPQMGGILDY 54 (61)
Q Consensus 39 ~NGLG~TPQMGWNS~~ 54 (61)
.+.++.||||||||-+
T Consensus 5 ~~~~~~~~p~gwnsw~ 20 (614)
T 3a21_A 5 RQITVPSAPMGWASWN 20 (614)
T ss_dssp EECCCCCCCEEEESHH
T ss_pred ccccCCCCceEEEchh
Confidence 3589999999999843
No 9
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=63.40 E-value=1.4 Score=22.99 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 040697 44 STPQMGGILD 53 (61)
Q Consensus 44 ~TPQMGWNS~ 53 (61)
+.|||-|+-.
T Consensus 12 rap~MDw~kk 21 (28)
T 2d11_E 12 RAPQMDWNRK 21 (28)
T ss_pred cCCcccHHHH
Confidence 4799999754
No 10
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=63.00 E-value=1.4 Score=22.94 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 040697 44 STPQMGGILD 53 (61)
Q Consensus 44 ~TPQMGWNS~ 53 (61)
+.|||-|+-.
T Consensus 12 rap~MDw~kk 21 (28)
T 2d10_E 12 RAPQMDWSKK 21 (28)
T ss_pred cCCcccHHHH
Confidence 4799999754
No 11
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=62.13 E-value=1.4 Score=33.42 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=9.8
Q ss_pred CCCCCCCCCCC
Q 040697 42 LASTPQMGGIL 52 (61)
Q Consensus 42 LG~TPQMGWNS 52 (61)
.+.+|||||||
T Consensus 191 w~~~~P~gwns 201 (564)
T 1zy9_A 191 VPKHTPTGWCS 201 (564)
T ss_dssp CCSSCCEEEES
T ss_pred cccCCceEEcc
Confidence 47999999997
No 12
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=55.12 E-value=2.7 Score=32.77 Aligned_cols=11 Identities=0% Similarity=-0.568 Sum_probs=9.4
Q ss_pred CCCCCCCCCCC
Q 040697 43 ASTPQMGGILD 53 (61)
Q Consensus 43 G~TPQMGWNS~ 53 (61)
..+|||||||=
T Consensus 330 ~~~~p~~wnsW 340 (732)
T 2xn2_A 330 DQIRPVLVNNW 340 (732)
T ss_dssp TSCCCCEEECH
T ss_pred cCCCCeEEEch
Confidence 58999999983
No 13
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=45.84 E-value=4.5 Score=32.29 Aligned_cols=12 Identities=0% Similarity=-0.587 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCC
Q 040697 42 LASTPQMGGILD 53 (61)
Q Consensus 42 LG~TPQMGWNS~ 53 (61)
-..+|||||||=
T Consensus 326 ~~~~~P~~wNsW 337 (745)
T 3mi6_A 326 AHEERPVLINNW 337 (745)
T ss_dssp TTSCCCCEEECH
T ss_pred cCCCCceEEEch
Confidence 468999999983
No 14
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=45.21 E-value=3.5 Score=32.11 Aligned_cols=11 Identities=0% Similarity=-0.622 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q 040697 43 ASTPQMGGILD 53 (61)
Q Consensus 43 G~TPQMGWNS~ 53 (61)
..+|||||||=
T Consensus 326 ~~~~p~~~nsW 336 (720)
T 2yfo_A 326 HMQRPVLINSW 336 (720)
T ss_dssp GSCCCCEEEHH
T ss_pred CCCCCeEEEch
Confidence 37999999973
No 15
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=36.11 E-value=8 Score=29.96 Aligned_cols=13 Identities=0% Similarity=-0.611 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 040697 42 LASTPQMGGILDY 54 (61)
Q Consensus 42 LG~TPQMGWNS~~ 54 (61)
--.+|||||||=+
T Consensus 325 ~~~~rPv~~NsW~ 337 (729)
T 4fnq_A 325 RDRERPILINNWE 337 (729)
T ss_dssp TTSCCCCEEECST
T ss_pred cccCceeEEcccc
Confidence 4678999999853
No 16
>1sgh_B Ezrin-radixin-moesin binding phosphoprotein 50; FERM-peptide complex, structural protein; 3.50A {Homo sapiens} SCOP: j.117.1.1
Probab=34.42 E-value=7.9 Score=21.30 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=8.0
Q ss_pred CCCCCCCCCCC
Q 040697 44 STPQMGGILDY 54 (61)
Q Consensus 44 ~TPQMGWNS~~ 54 (61)
+.|||-|+-.|
T Consensus 23 rapqMDw~KK~ 33 (39)
T 1sgh_B 23 RAPQMDWSKKN 33 (39)
T ss_pred cCCcccHHHHH
Confidence 46999997543
No 17
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=27.13 E-value=26 Score=23.15 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCC
Q 040697 43 ASTPQMGGILDYS 55 (61)
Q Consensus 43 G~TPQMGWNS~~~ 55 (61)
-+.|||-|+-.|.
T Consensus 199 ~~~~~~d~~~~~~ 211 (216)
T 2krg_A 199 KRAPQMDWSKKNE 211 (216)
T ss_dssp CCCSCCCCSCCCC
T ss_pred ccCcccCHHHHHH
Confidence 6779999997764
No 18
>1xkp_C Chaperone protein YSCB; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=26.97 E-value=13 Score=25.10 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=0.8
Q ss_pred CCCCCCCCCCCCCC
Q 040697 40 NGLASTPQMGGILD 53 (61)
Q Consensus 40 NGLG~TPQMGWNS~ 53 (61)
+=....||.|||-.
T Consensus 126 e~~~v~pq~~~~~~ 139 (143)
T 1xkp_C 126 TPFSVASRVGWNHH 139 (143)
T ss_dssp CC------------
T ss_pred cccccCCccCcccc
Confidence 34457899999854
No 19
>1lg7_A VSV matrix protein; virus matrix, viral protein; 1.96A {Vesicular stomatitis virus} SCOP: d.213.1.1
Probab=26.68 E-value=24 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.2
Q ss_pred ecCcccceeccCCCCCCCCCC
Q 040697 29 YTSNYGTLQLTNGLASTPQMG 49 (61)
Q Consensus 29 ~~~~~rR~LL~NGLG~TPQMG 49 (61)
.+...+|-++=--||.+|||=
T Consensus 85 ~a~~qGr~~vpHrlG~~Ppm~ 105 (182)
T 1lg7_A 85 HAHCEGRAYLPHRMGKTPPML 105 (182)
T ss_dssp EEEEEEEEEEEECSCCCCCCC
T ss_pred eeEecceEEeecccCCCCccc
Confidence 333447888888999999994
No 20
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=25.41 E-value=24 Score=19.60 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=9.3
Q ss_pred CCCCCCCCceeee
Q 040697 48 MGGILDYSGVWCT 60 (61)
Q Consensus 48 MGWNS~~~~~~~~ 60 (61)
-||++.|. .||.
T Consensus 48 dGw~~~~D-~W~~ 59 (69)
T 3sd4_A 48 KRWNHRYD-EWFC 59 (69)
T ss_dssp TTSCGGGC-EEEE
T ss_pred CCCCCCCC-EEEc
Confidence 38998885 6986
No 21
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=24.23 E-value=9.9 Score=28.19 Aligned_cols=16 Identities=44% Similarity=0.501 Sum_probs=13.5
Q ss_pred ccceeccCCCCCCCCC
Q 040697 33 YGTLQLTNGLASTPQM 48 (61)
Q Consensus 33 ~rR~LL~NGLG~TPQM 48 (61)
.+-.+|-||||-||+|
T Consensus 251 d~v~vlVNgLG~t~~~ 266 (336)
T 2iu4_A 251 KNYILLVNGLGSTTLM 266 (336)
T ss_dssp CEEEEEEEECBSSCHH
T ss_pred CeEEEEEECCCCccHH
Confidence 3567789999999987
No 22
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DHAK; dihydroxyacetone kinase subunit, tranferase; 2.50A {Lactococcus lactis subsp}
Probab=23.63 E-value=10 Score=28.01 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.4
Q ss_pred ccceeccCCCCCCCCC
Q 040697 33 YGTLQLTNGLASTPQM 48 (61)
Q Consensus 33 ~rR~LL~NGLG~TPQM 48 (61)
.+-.+|-||||-||+|
T Consensus 254 d~v~vlVNgLG~t~~~ 269 (332)
T 3ct4_A 254 QKYGILVNGMGATPLM 269 (332)
T ss_dssp CEEEEEEEECBSSCHH
T ss_pred CeEEEEEECCCCcCHH
Confidence 3567789999999987
No 23
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=22.78 E-value=28 Score=21.97 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 040697 45 TPQMGGILD 53 (61)
Q Consensus 45 TPQMGWNS~ 53 (61)
-|=|||.|.
T Consensus 47 nPLMGWtsS 55 (108)
T 2lju_A 47 EPLMNWTGS 55 (108)
T ss_dssp CCCCCCSSS
T ss_pred CCCccccCC
Confidence 467999985
No 24
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=22.45 E-value=57 Score=18.49 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCceeeeC
Q 040697 44 STPQMGGILDYSGVWCTF 61 (61)
Q Consensus 44 ~TPQMGWNS~~~~~~~~~ 61 (61)
..|..-|=||.-+|+|+|
T Consensus 231 ~~~~~~~~SDH~pv~a~f 248 (250)
T 4f1h_A 231 KLDCGRYTSDHWGIYCTF 248 (250)
T ss_dssp CCTTSSCSCSBCEEEEEE
T ss_pred ccCCCCCCCcccCEEEEE
Confidence 345556679999999987
No 25
>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}
Probab=21.95 E-value=33 Score=21.61 Aligned_cols=10 Identities=10% Similarity=-0.174 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q 040697 44 STPQMGGILD 53 (61)
Q Consensus 44 ~TPQMGWNS~ 53 (61)
-..|.|||+.
T Consensus 54 e~LP~~WN~~ 63 (153)
T 2vt8_A 54 ELLPAGWNNN 63 (153)
T ss_dssp SSCCTTTTSC
T ss_pred cCCCHHHcCC
Confidence 4589999985
No 26
>2w2r_A Matrix protein; viral assembly, viral morphogenesis, VSV, polymer, viral protein; HET: MSE; 1.83A {Vesicular stomatitis virus}
Probab=21.68 E-value=34 Score=24.68 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=15.6
Q ss_pred cCcccceeccCCCCCCCCCC
Q 040697 30 TSNYGTLQLTNGLASTPQMG 49 (61)
Q Consensus 30 ~~~~rR~LL~NGLG~TPQMG 49 (61)
+...+|-++=--||.+|||=
T Consensus 132 a~~qGr~~vpHrlG~~Ppm~ 151 (228)
T 2w2r_A 132 ATLTGRCFLPHRLGLIPPMF 151 (228)
T ss_dssp EEEEEEEEEEECSCCCCCCC
T ss_pred eeecceEEeecccCCCCccc
Confidence 33446888888899999994
No 27
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=21.24 E-value=30 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=8.0
Q ss_pred CCCCCCCCCCC
Q 040697 44 STPQMGGILDY 54 (61)
Q Consensus 44 ~TPQMGWNS~~ 54 (61)
.-|=|||.|.-
T Consensus 38 ~nPLMGWtsS~ 48 (106)
T 2jya_A 38 IDPIMGYTSSS 48 (106)
T ss_dssp CCTTTCSCSCC
T ss_pred cCCCcCcCCCC
Confidence 34779999863
No 28
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=21.17 E-value=13 Score=28.07 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.1
Q ss_pred cceeccCCCCCCCCC
Q 040697 34 GTLQLTNGLASTPQM 48 (61)
Q Consensus 34 rR~LL~NGLG~TPQM 48 (61)
+-.+|-||||-||+|
T Consensus 287 ~v~vLVNgLG~T~~~ 301 (366)
T 1oi2_A 287 RVIALVNNLGATPLS 301 (366)
T ss_dssp EEEEEEEECBSCCHH
T ss_pred eEEEEEECCCCccHH
Confidence 567789999999987
Done!