BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040699
(689 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 185/668 (27%), Positives = 280/668 (41%), Gaps = 118/668 (17%)
Query: 37 SLDFS----SLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR 92
SLD S S ++ L S+ S LK L++S ++ + G SLE LD+S+
Sbjct: 101 SLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 159
Query: 93 IALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
I+ ++ + LK+L++S G S +D C ++L+ L ++ N+ +
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNLEFLDVSSNNFSTGI 213
Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL 212
P+ L + ++L+ L +S N+L+G S + + T ++ L +S+N F PI PL L
Sbjct: 214 PF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSL 268
Query: 213 KIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF--------------- 257
+ N+ EI L+ L+ L LS ++ G + P F
Sbjct: 269 QYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 258 ---------LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPF--RLP 306
L L+ DLS + +GE P L + L L L +++ +GP L
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRI 364
+ L L + NN F G IP + + L SLH +S N L G+IPSS G+++ LR
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRD 443
Query: 365 LDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGE 424
L L N L GEIP+ L G + S N NL + L N GE
Sbjct: 444 LKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 425 ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXX 484
I + + + +L L L+NN+ SG IP LGD L ++ + N G IP
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQ 558
Query: 485 XXXXSDNNISGR---------LDLSC-----------------NKLI------------- 505
+ N I+G+ + C N+L
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 506 GPIPPKIGNLTRIQTLNLSHNDL------------------------TGSIPSTFSNLKH 541
G P N + L++S+N L +GSIP +L+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFL 601
+ LDLS+NKL+G+IP + L L ++ NNLSG IPE QF TF + N L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 737
Query: 602 CGLPLPIC 609
CG PLP C
Sbjct: 738 CGYPLPRC 745
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 250/550 (45%), Gaps = 70/550 (12%)
Query: 63 MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
+S +NG V GF SL LD+S ++ + L +G S LK+L++S++T
Sbjct: 81 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNT--- 134
Query: 123 NSSRILD-----QGLCSLMHLQELYMADNDLRGS--LPWCLAN-MTSLRILYVSYNQLTG 174
LD G L L+ L ++ N + G+ + W L++ L+ L +S N+++G
Sbjct: 135 -----LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 175 SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 234
+ S V+L E L +S+N+F I L + S L+ N+L+ + +++ S
Sbjct: 190 DVDVSRCVNL---EFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCT 244
Query: 235 PNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294
+L L++SS+ G I P L L+Y L+ K GE P +L L L L
Sbjct: 245 ---ELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 295 VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS 354
+ G S L L +S+NNF G +P++ + L V ++S N G +P
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 355 SFGNMNF-LRILDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMS 413
S N++ L LDLS+N +G I +L C L
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNL---CQNPKNT--------------------LQE 395
Query: 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPI 473
L L+ N F G+I +LS CS L L L+ N LSG IP LG L++L+ + + N LEG I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 474 PVEFCXXXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP 533
P E L L N L G IP + N T + ++LS+N LTG IP
Sbjct: 456 PQELMYVKTLET-----------LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 534 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNEN 593
L+++ L LSNN +G IP +L + ++L + N +G IP A F ++
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA-----AMFKQS 559
Query: 594 SYEGNTFLCG 603
F+ G
Sbjct: 560 GKIAANFIAG 569
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 215/475 (45%), Gaps = 51/475 (10%)
Query: 142 YMADNDLRGSLPW--CLANMTSLRILYVSYNQLTGSISS-SPLVHLTSIEKLYLSNNHFR 198
+++++ + GS+ C A++TSL + S N L+G +++ + L + ++ L +S+N
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDL---SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 136
Query: 199 IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFL 258
P + + L++ N ++ L+ +L L++S + G + +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---V 193
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI 318
+LE+ D+S + P L + + L+ L + + L+G F I + L +L+I
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF-GNMNFLRILDLSNNQLTGEIP 377
S+N F G IP L SL +++ N G IP G + L LDLS N G +P
Sbjct: 252 SSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 378 EHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLE 436
+ L SL L N+F GE+ +L K L+
Sbjct: 309 PFFGS-------------------------CSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 437 GLFLNNNNLSGKIPRWLGDLTR-LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISG 495
L L+ N SG++P L +L+ L + + +N+ GPI C + N
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---------NPKNTLQ 394
Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
L L N G IPP + N + + +L+LS N L+G+IPS+ +L + L L N L G+
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 556 IPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICR 610
IP +L+ +KTLE + +N+L+GEIP + N S N +P I R
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 185/668 (27%), Positives = 280/668 (41%), Gaps = 118/668 (17%)
Query: 37 SLDFS----SLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR 92
SLD S S ++ L S+ S LK L++S ++ + G SLE LD+S+
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 93 IALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
I+ ++ + LK+L++S G S +D C ++L+ L ++ N+ +
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNLEFLDVSSNNFSTGI 216
Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL 212
P+ L + ++L+ L +S N+L+G S + + T ++ L +S+N F PI PL L
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSL 271
Query: 213 KIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF--------------- 257
+ N+ EI L+ L+ L LS ++ G + P F
Sbjct: 272 QYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 258 ---------LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPF--RLP 306
L L+ DLS + +GE P L + L L L +++ +GP L
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRI 364
+ L L + NN F G IP + + L SLH +S N L G+IPSS G+++ LR
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRD 446
Query: 365 LDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGE 424
L L N L GEIP+ L G + S N NL + L N GE
Sbjct: 447 LKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 425 ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXX 484
I + + + +L L L+NN+ SG IP LGD L ++ + N G IP
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQ 561
Query: 485 XXXXSDNNISGR---------LDLSC-----------------NKLI------------- 505
+ N I+G+ + C N+L
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 506 GPIPPKIGNLTRIQTLNLSHNDL------------------------TGSIPSTFSNLKH 541
G P N + L++S+N L +GSIP +L+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFL 601
+ LDLS+NKL+G+IP + L L ++ NNLSG IPE QF TF + N L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 740
Query: 602 CGLPLPIC 609
CG PLP C
Sbjct: 741 CGYPLPRC 748
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 250/550 (45%), Gaps = 70/550 (12%)
Query: 63 MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
+S +NG V GF SL LD+S ++ + L +G S LK+L++S++T
Sbjct: 84 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNT--- 137
Query: 123 NSSRILD-----QGLCSLMHLQELYMADNDLRGS--LPWCLAN-MTSLRILYVSYNQLTG 174
LD G L L+ L ++ N + G+ + W L++ L+ L +S N+++G
Sbjct: 138 -----LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 175 SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 234
+ S V+L E L +S+N+F I L + S L+ N+L+ + +++ S
Sbjct: 193 DVDVSRCVNL---EFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 235 PNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294
+L L++SS+ G I P L L+Y L+ K GE P +L L L L
Sbjct: 248 ---ELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 295 VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS 354
+ G S L L +S+NNF G +P++ + L V ++S N G +P
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 355 SFGNMNF-LRILDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMS 413
S N++ L LDLS+N +G I +L C L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNL---CQNPKNT--------------------LQE 398
Query: 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPI 473
L L+ N F G+I +LS CS L L L+ N LSG IP LG L++L+ + + N LEG I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 474 PVEFCXXXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP 533
P E L L N L G IP + N T + ++LS+N LTG IP
Sbjct: 459 PQELMYVKTLET-----------LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 534 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNEN 593
L+++ L LSNN +G IP +L + ++L + N +G IP A F ++
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA-----AMFKQS 562
Query: 594 SYEGNTFLCG 603
F+ G
Sbjct: 563 GKIAANFIAG 572
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 215/475 (45%), Gaps = 51/475 (10%)
Query: 142 YMADNDLRGSLPW--CLANMTSLRILYVSYNQLTGSISS-SPLVHLTSIEKLYLSNNHFR 198
+++++ + GS+ C A++TSL + S N L+G +++ + L + ++ L +S+N
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDL---SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Query: 199 IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFL 258
P + + L++ N ++ L+ +L L++S + G + +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---V 196
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI 318
+LE+ D+S + P L + + L+ L + + L+G F I + L +L+I
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF-GNMNFLRILDLSNNQLTGEIP 377
S+N F G IP L SL +++ N G IP G + L LDLS N G +P
Sbjct: 255 SSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 378 EHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLE 436
+ L SL L N+F GE+ +L K L+
Sbjct: 312 PFFGS-------------------------CSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 437 GLFLNNNNLSGKIPRWLGDLTR-LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISG 495
L L+ N SG++P L +L+ L + + +N+ GPI C + N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---------NPKNTLQ 397
Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
L L N G IPP + N + + +L+LS N L+G+IPS+ +L + L L N L G+
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 556 IPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICR 610
IP +L+ +KTLE + +N+L+GEIP + N S N +P I R
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 129/301 (42%), Gaps = 42/301 (13%)
Query: 312 RLGMLDISNNNFRGHIPLEIGDI-LPSLHVFNIS-MNALDGSIPSSFGNMNFLRILDLSN 369
R+ LD+S N P+ LP L+ I +N L G IP + + L L +++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 370 NQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSL 429
++G IP+ L+ + L++L N G + S+
Sbjct: 111 TNVSGAIPDFLS-------------------------QIKTLVTLDFSYNALSGTLPPSI 145
Query: 430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRL-QYIIMPNNHLEGPIPVEFCXXXXXXXXXX 488
S +L G+ + N +SG IP G ++L + + N L G IP F
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF---- 201
Query: 489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548
+DLS N L G G+ Q ++L+ N L + K++ LDL
Sbjct: 202 --------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLR 252
Query: 549 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPI 608
NN++ G +P L +LK L +V++NNL GEIP+ F+ ++Y N LCG PLP
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311
Query: 609 C 609
C
Sbjct: 312 C 312
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 87/225 (38%), Gaps = 5/225 (2%)
Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313
P + L Y ++H ++G P +L + T L L ++L+G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373
+ N G IP G IS N L G IP +F N+N L +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 374 GEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCS 433
G+ + G + NL L L N G + Q L++
Sbjct: 211 GD--ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFC 478
L L ++ NNL G+IP+ G+L R NN P+ C
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 36/242 (14%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
+ L L LY+ ++ G++P L+ + +L L SYN L+G+
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--------------- 140
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGD 250
+P S+ L N + D N ++ I S+ + F + +++S +
Sbjct: 141 --------LPPSISSLPNLVGITF---DGNRISGAIPDSYGSFSKLF--TSMTISRNRLT 187
Query: 251 GFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRL-PIHS 309
G I P F +L + DLS + G+ + L ++ +++ L +SLA F L +
Sbjct: 188 GKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKVGL 242
Query: 310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSN 369
K L LD+ NN G +P + L LH N+S N L G IP GN+ + +N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300
Query: 370 NQ 371
N+
Sbjct: 301 NK 302
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 516 TRIQTLNLSHNDLTG-------SIPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLE 567
T QT +++ DL+G IPS+ +NL ++ L + N L G IP + +L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 568 VFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 627
+ + N+SG IP++ +Q T + N LP I P + GN
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 628 LIDTNSFFITFTTSYVI 644
+ D+ F TS I
Sbjct: 165 IPDSYGSFSKLFTSMTI 181
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
+ L ++ L + + P LA +++L++LY+ NQ+T + SPL LT+++ L
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYL 162
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
+ NN L PL N S+L AD+N++
Sbjct: 163 SIGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 225
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 225
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 247
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 224
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
YLS NH +L L N L++F + LN I +L PN
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 222
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
+ L ++ L + + P LA +++L++LY+ NQ+T + SPL LT+++ L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYL 156
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
+ N L PL N S+L AD+N++
Sbjct: 157 SIGNAQVS---DLTPLANLSKLTTLKADDNKI 185
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 409 ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH 468
A+ L L+ N S++ + + L L+LN+N L +L L+ + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 469 LEGPIPVEFCXXXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHND 527
L+ +P+ D N + +PP++ +LT++ L+L +N+
Sbjct: 97 LQA-LPIGVFDQLVNLAELRLDRNQ-----------LKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 528 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVFSVAYNNLSGEIPE 582
L F L ++ L L NN+L ++P +L ELKTL++ NN +PE
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIF 215
YLS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIF 215
YLS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIF 215
YLS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
GL L L+ LY+ +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIF 215
YLS NH +L L N L++F
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELF 203
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ NQLT + + L L +++ L L N + IP
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ NQLT + + L L +++ L L N + IP
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ NQLT + + L L +++ L L N + IP
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ NQLT + + L L +++ L L N + IP
Sbjct: 155 LANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 36/235 (15%)
Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW------------LGD 455
L +L +L+L N +Q+ S L L+L NN + IP + LG+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 456 LTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLD---LSCNKLIGPIPPKI 512
L RL+YI EG + + + + RL+ LS N+L P
Sbjct: 141 LKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEVFSV 571
LT ++ L L H + + F +LK +E L+LS+N L +PH L L LE +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHL 257
Query: 572 AYNNLSGEIPEWEAQ-----FATFNENSYEGNTFLCGLPLPICRSPATMSEASIG 621
+N W + + + + NT C C +PA + IG
Sbjct: 258 NHN-------PWHCNCDVLWLSWWLKETVPSNTTCCAR----CHAPAGLKGRYIG 301
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 72 VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR----------G 121
V Q F + L L + + I S+ +PSL+ L L R G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 122 TNSSRILDQGLC---------SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQL 172
+ R L+ G+C +L+ L+EL ++ N L P +TSLR L++ + Q+
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 173 TGSISSSPLVHLTSIEKLYLSNNHF 197
+I + L S+E+L LS+N+
Sbjct: 215 -ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 560
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 515 LTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
L+ ++ L ++ N + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 574 NN 575
NN
Sbjct: 504 NN 505
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 560
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 515 LTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
L+ ++ L ++ N + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 574 NNL 576
NN
Sbjct: 528 NNF 530
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 19/202 (9%)
Query: 420 HFIGEISQSLSKC-SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFC 478
H +IS + +C + L+ L L +L G +P + L L+ +++ NH + +
Sbjct: 261 HRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAA 319
Query: 479 XXXXXXXXXXSDNNISGRLDLSCNKLIGPIPP----------------KIGNLTRIQTLN 522
N L + C + +G + ++ NL+ +QTLN
Sbjct: 320 NFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLN 379
Query: 523 LSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIP 581
LSHN+ G F +E LDL+ +L+ P + L L+V ++ Y L
Sbjct: 380 LSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQ 439
Query: 582 EWEAQFATFNENSYEGNTFLCG 603
A + +GN F G
Sbjct: 440 HLLAGLPVLRHLNLKGNHFQDG 461
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 560
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNG 554
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
FP L+ L +S CE+ + G ++SL HL S L + G + SL +
Sbjct: 51 FPELQVLDLSRCEIQTIEDGA----YQSLSHL-----------STLILTGNPIQSLALGA 95
Query: 115 LSNSTR-------GTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILY 166
S + TN + + + + L L+EL +A N ++ LP +N+T+L L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPIS-LEP-LFNHSRLKIFYADNNELNA 224
+S N++ SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 156 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLN 553
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
FP L+ L +S CE+ + G ++SL HL S L + G + SL +
Sbjct: 52 FPELQVLDLSRCEIQTIEDGA----YQSLSHL-----------STLILTGNPIQSLALGA 96
Query: 115 LSNSTR-------GTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILY 166
S + TN + + + + L L+EL +A N ++ LP +N+T+L L
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPIS-LEP-LFNHSRLKIFYADNNELNA 224
+S N++ SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 157 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLN 553
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
FP L+ L +S CE+ + G ++SL HL S L + G + SL +
Sbjct: 53 FPELQVLDLSRCEIQTIEDGA----YQSLSHL-----------STLILTGNPIQSLALGA 97
Query: 115 LSNSTR-------GTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILY 166
S + TN + + + + L L+EL +A N ++ LP +N+T+L L
Sbjct: 98 FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPIS-LEP-LFNHSRLKIFYADNNELNA 224
+S N++ SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 158 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLN 553
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
FP L+ L +S CE+ + G ++SL HL S L + G + SL +
Sbjct: 52 FPELQVLDLSRCEIQTIEDGA----YQSLSHL-----------STLILTGNPIQSLALGA 96
Query: 115 LSNSTR-------GTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILY 166
S + TN + + + + L L+EL +A N ++ LP +N+T+L L
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPIS-LEP-LFNHSRLKIFYADNNELNA 224
+S N++ SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 157 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 512 IGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLN 553
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
FP L+ L +S CE+ + G ++SL HL S L + G + SL +
Sbjct: 53 FPELQVLDLSRCEIQTIEDGA----YQSLSHL-----------STLILTGNPIQSLALGA 97
Query: 115 LSNSTR-------GTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILY 166
S + TN + + + + L L+EL +A N ++ LP +N+T+L L
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPIS-LEP-LFNHSRLKIFYADNNELNA 224
+S N++ SI + L L + L LS + P++ ++P F RLK D N+L +
Sbjct: 158 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW------------LGD 455
L +L +L+L N +Q+ S L L+L NN + IP + LG+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 456 LTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLD---LSCNKLIGPIPPKI 512
L RL+YI EG + + + + RL+ LS N+L P
Sbjct: 141 LKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 560
LT ++ L L H + + F +LK +E L+LS+N L +PH L
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDL 245
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Query: 107 MPSLKYLSLSNSTR----------GTNSSRILDQGLC---------SLMHLQELYMADND 147
+PSL+ L L R G + R L+ G+C +L+ L+EL ++ N
Sbjct: 130 VPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR 189
Query: 148 LRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
L P +TSLR L++ + Q+ +I + L S+E+L LS+N+
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ N LT + + L L +++ L L N + IP
Sbjct: 155 LANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
+ G LDLS N+L +P L + L++S N LT L ++ L L N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
P L LE S+A N+L+ E+P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLT-ELP 164
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 48 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 100
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 101 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ N LT + + L L +++ L L N + IP
Sbjct: 156 LANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 189
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
+ G LDLS N+L +P L + L++S N LT L ++ L L N+L
Sbjct: 79 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
P L LE S+A NNL+ E+P
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLT-ELP 165
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 80 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 146/363 (40%), Gaps = 65/363 (17%)
Query: 24 AQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL 83
+ LH N+ YL+L S S+ S+AS+ P + + S F K L
Sbjct: 294 SHSLHGLFNVRYLNLKRSFTKQSI--SLASL-PKIDDFS--------------FQWLKCL 336
Query: 84 EHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH--LQEL 141
EHL+M I + + +LKYLSLSNS T+ + ++ SL H L L
Sbjct: 337 EHLNMEDNDIP---GIKSNMFTGLINLKYLSLSNSF--TSLRTLTNETFVSLAHSPLHIL 391
Query: 142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
+ N + + + L +L + N++ ++ L +I ++YLS N +
Sbjct: 392 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY---- 447
Query: 202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ---LSRLSLSSSYGDGFIFPKFL 258
++T++ P+ Q L R++L + P
Sbjct: 448 ----------------------LQLTRNSFALVPSLQRLMLRRVALKNVDSS----PSPF 481
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRL-----PIHSHKRL 313
+L DLS+ + +LE KL L L +++LA ++ PI+ K L
Sbjct: 482 QPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 540
Query: 314 GMLDISNNNFRG--HIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
L I N G IP+E+ L L + ++ +N L+ S F N L+ L+L N
Sbjct: 541 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 600
Query: 372 LTG 374
+T
Sbjct: 601 ITS 603
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 576 LS 577
LS
Sbjct: 90 LS 91
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 574 NNL 576
NN+
Sbjct: 287 NNI 289
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI 556
LD+ N + P L ++ LNL HN+L+ TF+ ++ L L +N +
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 118
Query: 557 PHQLVELKTLEVFSVAYNNLSG 578
+ V+ K L +++N LS
Sbjct: 119 NNPFVKQKNLITLDLSHNGLSS 140
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ CE+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ N LT + + L L +++ L L N + IP
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
+ G LDLS N+L +P L + L++S N LT L ++ L L N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
P L LE S+A NNL+ E+P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 146/363 (40%), Gaps = 65/363 (17%)
Query: 24 AQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL 83
+ LH N+ YL+L S S+ S+AS+ P + + S F K L
Sbjct: 299 SHSLHGLFNVRYLNLKRSFTKQSI--SLASL-PKIDDFS--------------FQWLKCL 341
Query: 84 EHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH--LQEL 141
EHL+M I + + +LKYLSLSNS T+ + ++ SL H L L
Sbjct: 342 EHLNMEDNDIP---GIKSNMFTGLINLKYLSLSNSF--TSLRTLTNETFVSLAHSPLHIL 396
Query: 142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
+ N + + + L +L + N++ ++ L +I ++YLS N +
Sbjct: 397 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY---- 452
Query: 202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ---LSRLSLSSSYGDGFIFPKFL 258
++T++ P+ Q L R++L + P
Sbjct: 453 ----------------------LQLTRNSFALVPSLQRLMLRRVALKNVDSS----PSPF 486
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRL-----PIHSHKRL 313
+L DLS+ + +LE KL L L +++LA ++ PI+ K L
Sbjct: 487 QPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 545
Query: 314 GMLDISNNNFRG--HIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
L I N G IP+E+ L L + ++ +N L+ S F N L+ L+L N
Sbjct: 546 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 605
Query: 372 LTG 374
+T
Sbjct: 606 ITS 608
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 576 LS 577
LS
Sbjct: 95 LS 96
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 574 NNL 576
NN+
Sbjct: 292 NNI 294
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI 556
LD+ N + P L ++ LNL HN+L+ TF+ ++ L L +N +
Sbjct: 64 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 123
Query: 557 PHQLVELKTLEVFSVAYNNLSG 578
+ V+ K L +++N LS
Sbjct: 124 NNPFVKQKNLITLDLSHNGLSS 145
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 134 SLMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYL 192
SL++L+ELY+ N L G+LP ++T L +L + NQLT + S+ L +++L++
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 193 SNNHF-RIPISLEPLFNHSRLKIFYADNNELNA 224
N +P +E L + + L + D N+L +
Sbjct: 120 CCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 146/363 (40%), Gaps = 65/363 (17%)
Query: 24 AQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL 83
+ LH N+ YL+L S S+ S+AS+ P + + S F K L
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSI--SLASL-PKIDDFS--------------FQWLKCL 331
Query: 84 EHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH--LQEL 141
EHL+M I + + +LKYLSLSNS T+ + ++ SL H L L
Sbjct: 332 EHLNMEDNDIP---GIKSNMFTGLINLKYLSLSNSF--TSLRTLTNETFVSLAHSPLHIL 386
Query: 142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
+ N + + + L +L + N++ ++ L +I ++YLS N +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY---- 442
Query: 202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ---LSRLSLSSSYGDGFIFPKFL 258
++T++ P+ Q L R++L + P
Sbjct: 443 ----------------------LQLTRNSFALVPSLQRLMLRRVALKNVDSS----PSPF 476
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRL-----PIHSHKRL 313
+L DLS+ + +LE KL L L +++LA ++ PI+ K L
Sbjct: 477 QPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535
Query: 314 GMLDISNNNFRG--HIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
L I N G IP+E+ L L + ++ +N L+ S F N L+ L+L N
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595
Query: 372 LTG 374
+T
Sbjct: 596 ITS 598
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 576 LS 577
LS
Sbjct: 85 LS 86
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 574 NNL 576
NN+
Sbjct: 282 NNI 284
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 557
DLS +K+ + + T ++ L L+ N++ + F L H+ L+LS N L G I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 558 HQLVE-LKTLEVFSVAYNNLSG 578
++ E L LEV ++YN++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 46 SLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIG- 104
+LL+S+ S F L+ L+++ E+N + F L HL ++ L+ +FL I
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNA----FWGLTHL----LKLNLSQNFLGSIDS 340
Query: 105 ---ESMPSLKYLSLSNSTRGTNSSRIL-DQGLCSLMHLQELYMADNDLRGSLPWCLANMT 160
E++ L+ L LS N R L DQ L +L+EL + N L+ +T
Sbjct: 341 RMFENLDKLEVLDLS-----YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 161 SLRILYVSYN 170
SL+ +++ N
Sbjct: 396 SLQKIWLHTN 405
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 515 LTRIQTLNLSHNDLTGSIPST-FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
LT + LNLS N L GSI S F NL +E LDLS N + + L L+ ++
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 574 NNLSGEIPE 582
N L +P+
Sbjct: 381 NQLKS-VPD 388
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 572
G L + L L N LTG P+ F H++ L L NK+ + L L+ ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 573 YNNLSGEIP 581
N +S +P
Sbjct: 111 DNQISCVMP 119
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
T IQ L+L++N L + STFS LK ++ LDLS N L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 574 NNLSGEIPE 582
NN+ P
Sbjct: 282 NNIQRLSPR 290
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 23 TAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKS 82
+ + + +NL YLSL + S+ S+AS P++ + S F K
Sbjct: 288 SPRSFYGLSNLRYLSLKRAFTKQSV--SLAS-HPNIDDFS--------------FQWLKY 330
Query: 83 LEHLDMSSTRIALNTS--FLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH--L 138
LE+L+M I S F ++ SLKYLSLS + T+ + ++ SL H L
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLV-----SLKYLSLSKTF--TSLQTLTNETFVSLAHSPL 383
Query: 139 QELYMADNDL----RGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN 194
L + N + G+ W + LRIL + N++ +S L +I ++YLS
Sbjct: 384 LTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSY 439
Query: 195 NHF 197
N +
Sbjct: 440 NKY 442
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 533 PSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS 577
PS F L+++ LDLSNN + I L+E L+ LE+ +NNL+
Sbjct: 473 PSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLA 517
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 508 IPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 567
+P ++ N + ++LS+N ++ +FSN+ + +L LS N+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 568 VFSVAYNNLSGEIPE 582
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 80 FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQ 139
K+ +HL +S+ I +S M +L+ LSL G N + ++ L+
Sbjct: 47 LKACKHLALSTNNIEKISSL-----SGMENLRILSL-----GRNLIKKIENLDAVADTLE 96
Query: 140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI 199
EL+++ N + SL + + +LR+LY+S N++T L L +E L L+ N
Sbjct: 97 ELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---- 150
Query: 200 PISLEPLFNHSRLKIFYADNN 220
PL+N Y +NN
Sbjct: 151 -----PLYND------YKENN 160
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
L L NK+ + L + L LS N ++ + +N H+ L L+NNKL K
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VK 254
Query: 556 IPHQLVELKTLEVFSVAYNNLSG 578
+P L + K ++V + NN+S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 557
DL K+ +PP L+L +N +T F NLK++ +L L NNK++ P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 558 HQLVELKTLEVFSVAYNNLSGEIPE 582
L LE ++ N L E+PE
Sbjct: 94 GAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN--- 553
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 554 GKIPHQLVELKTLE 567
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467
L NL L L N + SL+ L L LNNN L K+P L D +Q + + NN
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 468 HLEGPIPVEFC 478
++ +FC
Sbjct: 274 NISAIGSNDFC 284
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
L L NK+ + L + L LS N ++ + +N H+ L L+NNKL K
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VK 254
Query: 556 IPHQLVELKTLEVFSVAYNNLSG 578
+P L + K ++V + NN+S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 557
DL K+ +PP L+L +N +T F NLK++ +L L NNK++ P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 558 HQLVELKTLEVFSVAYNNLSGEIPE 582
L LE ++ N L E+PE
Sbjct: 94 GAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN--- 553
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 554 GKIPHQLVELKTLE 567
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467
L NL L L N + SL+ L L LNNN L K+P L D +Q + + NN
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 468 HLEGPIPVEFC 478
++ +FC
Sbjct: 274 NISAIGSNDFC 284
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 80 FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQ 139
K+ +HL +S+ I +S M +L+ LSL G N + ++ L+
Sbjct: 48 LKACKHLALSTNNIEKISSL-----SGMENLRILSL-----GRNLIKKIENLDAVADTLE 97
Query: 140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI 199
EL+++ N + SL + + +LR+LY+S N++T L L +E L L+ N
Sbjct: 98 ELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---- 151
Query: 200 PISLEPLFNHSRLKIFYADNN 220
PL+N Y +NN
Sbjct: 152 -----PLYND------YKENN 161
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 53/285 (18%)
Query: 105 ESMPSLKYLSLSNSTRGTNSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR 163
E + +L+YL+L N ++I D L +L+ L LY+ N + L N+T+LR
Sbjct: 63 EYLTNLEYLNL-------NGNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLR 113
Query: 164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN 223
LY++ + ++ SPL +LT L L NH +S PL N + L +++
Sbjct: 114 ELYLNEDNIS---DISPLANLTKXYSLNLGANHNLSDLS--PLSNXTGLNYLTVTESKVK 168
Query: 224 -----AEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEF 278
A +T +SL+ Q+ +S +S F ++ D+
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT------------- 215
Query: 279 PTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDI---- 334
P + N T+L L + N+ + P+ + +L L+I N +I DI
Sbjct: 216 P---VANXTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTN--------QISDINAVK 262
Query: 335 -LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE 378
L L N+ N + S S N++ L L L+NNQL E E
Sbjct: 263 DLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXE 305
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPV 475
G++ I +IS L+ S L LFLNNN L + +G LT L + + NH+ P+
Sbjct: 273 GSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 113/278 (40%), Gaps = 33/278 (11%)
Query: 121 GTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
G N + L+Q S HL+EL + +N + P N+ +LR L + N+L I
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLG 98
Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQ 238
L+++ KL +S N +I I L+ +F LK +N+L + SH +
Sbjct: 99 VFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNS 153
Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG---------------EFPTW-L 282
L +L+L I + L H H L L H+ +N E W
Sbjct: 154 LEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 283 LENNT-------KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDIL 335
L+ T L LS+ + +L L + L L++S N I + L
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHEL 271
Query: 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373
L + L P +F +N+LR+L++S NQLT
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 110 LKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY 169
L++L+LS + T +L + L+ LQE+ + L P+ + LR+L VS
Sbjct: 250 LRFLNLSYNPISTIEGSMLHE----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 170 NQLTGSISSSPLVHLTSIEKLYLSNN 195
NQLT ++ S + ++E L L +N
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN 330
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI 556
L+L+ N + P NL ++TL L N L F+ L ++ LD+S NK+ +
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 557 PHQLVELKTLEVFSVAYNNL 576
+ +L L+ V N+L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDL 140
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ E+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ N LT + + L L +++ L L N + IP
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
+ G LDLS N+L +P L + L++S N LT L ++ L L N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
P L LE S+A NNL+ E+P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 36 LSLDFSSLHIS--LLQ--SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMS 89
L D + LH+S LL S+A++ P L L++ E+ L P L LD+S
Sbjct: 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLS 85
Query: 90 STRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDL 148
++ L ++G+++P+L L +S N L G L L LQELY+ N+L
Sbjct: 86 HNQL----QSLPLLGQTLPALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 149 RGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
+ P L L L ++ N LT + + L L +++ L L N + IP
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
+ G LDLS N+L +P L + L++S N LT L ++ L L N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
P L LE S+A NNL+ E+P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL-KHVESLDLSNNKLN 553
G L+ N+L G +P G+ ++ +LNL++N +T IP+ F + VE+L ++NKL
Sbjct: 333 GXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
Query: 554 GKIPHQLVELKTLEVFSV---AYNNL 576
IP+ + + K++ V S +YN +
Sbjct: 391 -YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 50 SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
S+A++ P L L++ E+ L P L LD+S ++ L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQL----QSLPLLGQTL 99
Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166
P+L L +S N L G L L LQELY+ N+L+ P L L L
Sbjct: 100 PALTVLDVS-----FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNH-FRIP 200
++ N LT + + L L +++ L L N + IP
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
+ G LDLS N+L +P L + L++S N LT L ++ L L N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
P L LE S+A NNL+ E+P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
LG LD+S+N + +PL +G LP+L V ++S N L + + L+ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI 164
+ + +L YL L+ + + + + D+ L +L+EL + +N L+ +T+L
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNH-SRLKIFYADNNEL 222
LY+ +NQL S+ LT++ +L L NN + +P E +F+ ++LK ++N+L
Sbjct: 138 LYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLP---EGVFDKLTQLKQLSLNDNQL 193
Query: 223 NA 224
+
Sbjct: 194 KS 195
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 27/101 (26%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
+++ L L HN + + S L + L L NNKL+ ++P L +LK L+V + NN
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 576 LS--------------------------GEIPEWEAQFATF 590
++ +P WE Q ATF
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 35/167 (20%)
Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
NL NL L+L N I +IS +LS +SL+ L ++N ++ P L +LT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 467 NHLEGPIPVEFCXXXXXXXXXXSDNNISGRLD-----LSCNKLIGPIPPKIGNLTRIQTL 521
N + SD ++ +L ++ N I I P +G LT + L
Sbjct: 183 NKV-------------------SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDEL 222
Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP----HQLVELK 564
+L+ N L T ++L ++ LDL+NN+++ P +L ELK
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 35/167 (20%)
Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
NL NL L+L N I +IS +LS +SL+ L ++N ++ P L +LT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 467 NHLEGPIPVEFCXXXXXXXXXXSDNNISGRLD-----LSCNKLIGPIPPKIGNLTRIQTL 521
N + SD ++ +L ++ N I I P +G LT + L
Sbjct: 183 NKV-------------------SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDEL 222
Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP----HQLVELK 564
+L+ N L T ++L ++ LDL+NN+++ P +L ELK
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 70/239 (29%)
Query: 27 LHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL 86
L + TNL L L SS IS + +++ + SL+ LS S +V L + + +LE L
Sbjct: 125 LKNLTNLNRLEL--SSNTISDISALSGL-TSLQQLSFSSNQVTDL---KPLANLTTLERL 178
Query: 87 DMSSTRI------ALNTSFLQIIGES-----------MPSLKYLSLSNSTRGTNSSRILD 129
D+SS ++ A T+ +I + + +L LSL N +++ D
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL-------NGNQLKD 231
Query: 130 QG-LCSLMHLQELYMADNDLRGSLPWC--------------------LANMTSLRILYVS 168
G L SL +L +L +A+N + P LA +T+L L ++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 291
Query: 169 YNQLT------------------GSISS-SPLVHLTSIEKLYLSNNHFRIPISLEPLFN 208
NQL +IS SP+ LT +++L+ SNN SL L N
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 350
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 35/167 (20%)
Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
NL NL L+L N I +IS +LS +SL+ L ++N ++ P L +LT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 467 NHLEGPIPVEFCXXXXXXXXXXSDNNISGRLD-----LSCNKLIGPIPPKIGNLTRIQTL 521
N + SD ++ +L ++ N I I P +G LT + L
Sbjct: 183 NKV-------------------SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDEL 222
Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP----HQLVELK 564
+L+ N L T ++L ++ LDL+NN+++ P +L ELK
Sbjct: 223 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 578 GEIPE 582
E+P+
Sbjct: 93 TELPK 97
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 511 KIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVF 569
++ NL +Q LNLS+N+ G F +E LD++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 570 SVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCG 603
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 578 GEIPE 582
E+P+
Sbjct: 93 TELPK 97
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 514 NLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL--KTLEVFS 570
NL + L+LS N + + +F L ++S+D S+N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 571 VAYNNLSGEIP-EW 583
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
+ ++ L+LSH + F LK ++ L+L+ NK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 576 LSGEI 580
L GE+
Sbjct: 325 LLGEL 329
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 26/162 (16%)
Query: 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 574
L+ +Q L L+HN L P FS+L + L L++N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 575 NLSGEIPE----------------WEAQFATFNENSYEGNTFLCGLPLPI-CRSPATMSE 617
L P+ E + +TF N + G P I C P + S
Sbjct: 537 QLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596
Query: 618 ASI------GNERDDNLIDTN-SFFITFTTSYVIVIFGIVIV 652
S+ G + ++ L S FI T + + + I+ V
Sbjct: 597 VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTV 638
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 130 QGLCSLMHLQELYM------ADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVH 183
+ L L HL++L + + N LR LP LA + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 184 LTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225
L +++L L NN + +++PL + RL + N L E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 130 QGLCSLMHLQELYM------ADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVH 183
+ L L HL++L + + N LR LP LA + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 184 LTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225
L +++L L NN + +++PL + RL + N L E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 135 LMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
L L +LY+ N L+ SLP +T L+ L ++ NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 194 NNHFR 198
N +
Sbjct: 164 TNQLQ 168
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 515 LTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 569
LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 570 SVAYNNLSGEI 580
++ EI
Sbjct: 188 GNQFDCSRCEI 198
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 135 LMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
L L +LY+ N L+ SLP +T L+ L ++ NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 194 NNHFR 198
N +
Sbjct: 164 TNQLQ 168
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 515 LTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 569
LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 570 SVAYN 574
++
Sbjct: 188 GNQFD 192
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 37 SLDFSSLHISLLQSIASIFPSLKNLS---MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI 93
+L S H+ +Q I +LKNL+ +S + + +P + + L++SST I
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP--EKMRFLNLSSTGI 422
Query: 94 ALNTSFLQIIGESMP-SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
+++ +P +L+ L +SN+ LD L LQELY++ N L+ +L
Sbjct: 423 -------RVVKTCIPQTLEVLDVSNNN--------LDSFSLFLPRLQELYISRNKLK-TL 466
Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
P + L ++ +S NQL S+ LTS++K++L N
Sbjct: 467 PDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 132 LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLY 191
+ SL LQ L+ A+N + S LAN+T++ L +NQ++ +PL +LT I +L
Sbjct: 326 VSSLTKLQRLFFANN--KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLG 380
Query: 192 LSNNHF 197
L++ +
Sbjct: 381 LNDQAW 386
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
G+ L +L ++ ++N L P L N+T L + ++ NQ+ +PL +LT++ L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 116
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGD 250
L NN ++PL N + L +N + ++I+ LT+ L +L S+G+
Sbjct: 117 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQL----SFGN 164
Query: 251 GFIFPKFLYHQHDLEYADLSHIKM 274
K L + LE D+S K+
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKV 188
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 453 LGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKI 512
L +LT L Y+I+ N L+ F +N + D +KL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-------- 132
Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEV 568
T + LNL+HN L F L ++ LDLS N+L +P +L +LK L +
Sbjct: 133 ---TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL 188
Query: 569 F 569
+
Sbjct: 189 Y 189
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 36/182 (19%)
Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG-------KIPRW----LGDL 456
LANL +L+L N + + S L+ L+L NN + +IP LG+L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 457 TRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLDLS-CNKLIGPIPPKIGNL 515
RL YI EG + + L+L+ CN + IP + L
Sbjct: 171 KRLSYI--SEGAFEGLSNLRY-------------------LNLAMCN--LREIP-NLTPL 206
Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
++ L+LS N L+ P +F L H++ L + +++ + L++L ++A+NN
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266
Query: 576 LS 577
L+
Sbjct: 267 LT 268
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571
I +L++++ L +SHN + S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 572 AYNNL 576
A++ L
Sbjct: 101 AFDAL 105
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 301 GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDIL----------PSLHV--FNISMNAL 348
R+ I SH R+ LDIS F+ + LE D+ P++++ ++S NA
Sbjct: 45 SKLRILIISHNRIQYLDISV--FKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF 102
Query: 349 DG-SIPSSFGNMNFLRILDLSNNQL 372
D I FGNM+ L+ L LS L
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHL 127
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 15/61 (24%)
Query: 335 LPSLHVFNISMNA----------LDG----SIPSSFGNMNFLRILDLSNNQLTGEIPEHL 380
L +L +FNIS N L+G +P+ N++ LR+LDLS+N+LT +P L
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 381 A 381
Sbjct: 290 G 290
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF--SVA 572
L R+Q LN+SHN+L S ++ L + +LD S N++ L+ F S+A
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 548
Query: 573 YNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASI 620
+ NL+ + F + E FL + C +P M+ + +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLV 596
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 512 IGNLTRIQTLNLSHNDL-TGSIPSTFSNLKHVESLDLSNN 550
IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF--SVA 572
L R+Q LN+SHN+L S ++ L + +LD S N++ L+ F S+A
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 543
Query: 573 YNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASI 620
+ NL+ + F + E FL + C +P M+ + +
Sbjct: 544 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLV 591
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 512 IGNLTRIQTLNLSHNDL-TGSIPSTFSNLKHVESLDLSNN 550
IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 37 SLDFSSLHISLLQSIASIFPSLKNLS---MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI 93
+L S H+ +Q I +LKNL+ +S + + +P + + L++SST I
Sbjct: 391 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP--EKMRFLNLSSTGI 448
Query: 94 ALNTSFLQIIGESMP-SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
+++ +P +L+ L +SN+ LD L LQELY++ N L+ +L
Sbjct: 449 -------RVVKTCIPQTLEVLDVSNNN--------LDSFSLFLPRLQELYISRNKLK-TL 492
Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
P + L ++ ++ NQL S+ LTS++K++L N
Sbjct: 493 PDA-SLFPVLLVMKIASNQL-KSVPDGIFDRLTSLQKIWLHTN 533
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 515 LTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
L+ ++ L ++ N + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 574 NN 575
NN
Sbjct: 209 NN 210
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
+ L L + NNN + + D+ P L +S N L+ +P N +FL+I+D+ NN
Sbjct: 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNN 163
Query: 371 QLTG 374
L
Sbjct: 164 SLKK 167
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 28 HSFTNLEYLSL------DFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFK 81
H F N+ L++ D SSL + + P L LSMS + + F
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNT----PKLTTLSMSNNNLER-IEDDTFQATT 165
Query: 82 SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRI----LDQGLCSL-- 135
SL++L +SS R+ + +PSL + ++S + T + I LD S+
Sbjct: 166 SLQNLQLSSNRLT------HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219
Query: 136 ------MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEK 189
+ L L + N+L + W L N L + +SYN+L I P V + +E+
Sbjct: 220 VRGPVNVELTILKLQHNNLTDT-AWLL-NYPGLVEVDLSYNEL-EKIMYHPFVKMQRLER 276
Query: 190 LYLSNN 195
LY+SNN
Sbjct: 277 LYISNN 282
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 11/62 (17%)
Query: 497 LDLSCNKLIGPI----PPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
L+LS N L G + PPK+ + L+L HN+ SIP ++L+ ++ L++++N+L
Sbjct: 433 LNLSSNMLTGSVFRCLPPKV------KVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 553 NG 554
Sbjct: 486 KS 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,085,614
Number of Sequences: 62578
Number of extensions: 773517
Number of successful extensions: 2430
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1625
Number of HSP's gapped (non-prelim): 506
length of query: 689
length of database: 14,973,337
effective HSP length: 105
effective length of query: 584
effective length of database: 8,402,647
effective search space: 4907145848
effective search space used: 4907145848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)