Query 040699
Match_columns 689
No_of_seqs 415 out of 4394
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.3E-59 2E-63 541.4 44.0 542 5-605 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-54 2.2E-59 507.5 43.0 521 30-606 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.4E-43 1.4E-47 344.2 7.9 417 139-630 81-498 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.1E-41 8.9E-46 331.5 5.6 392 83-552 54-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.3E-38 2.9E-43 300.5 -14.8 477 32-577 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 5.2E-38 1.1E-42 296.5 -13.9 476 5-553 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.8E-34 3.9E-39 300.0 -5.1 484 10-575 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.5E-33 3.3E-38 293.1 -3.3 487 7-574 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.8E-32 6.1E-37 271.2 -1.8 343 252-605 22-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.5E-31 3.1E-36 266.2 -4.4 251 258-528 122-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.1E-28 6.7E-33 230.4 -2.6 300 311-623 67-396 (498)
12 KOG4237 Extracellular matrix p 99.9 9.9E-27 2.2E-31 220.2 -2.5 389 109-574 68-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.5E-26 229.3 25.5 347 129-551 551-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.4E-20 3.1E-25 220.2 27.0 287 262-575 611-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 2.8E-20 6.1E-25 201.4 17.2 265 262-584 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 6.3E-19 1.4E-23 191.0 17.9 264 240-562 204-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.9E-18 1.3E-22 184.9 14.7 225 312-577 200-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 6.6E-18 1.4E-22 184.5 13.5 247 312-602 179-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 178.2 2.3 153 292-446 3-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-18 4.8E-23 175.7 2.9 179 267-446 3-206 (319)
21 KOG0617 Ras suppressor protein 99.7 3.7E-19 7.9E-24 149.6 -4.0 182 405-602 29-213 (264)
22 KOG0617 Ras suppressor protein 99.6 6.5E-18 1.4E-22 142.1 -4.8 161 359-537 32-193 (264)
23 PLN03150 hypothetical protein; 99.5 3.6E-13 7.9E-18 147.2 12.4 113 498-610 424-538 (623)
24 KOG3207 Beta-tubulin folding c 99.3 1.5E-12 3.3E-17 126.5 2.6 215 2-225 118-341 (505)
25 PLN03150 hypothetical protein; 99.2 3.8E-11 8.3E-16 131.5 11.0 114 458-582 419-533 (623)
26 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.3E-17 126.4 0.0 191 2-200 143-341 (505)
27 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 114.4 0.7 134 430-580 281-415 (490)
28 KOG0532 Leucine-rich repeat (L 99.1 1.5E-12 3.3E-17 130.4 -5.3 195 364-579 54-249 (722)
29 KOG1909 Ran GTPase-activating 99.1 1.2E-11 2.5E-16 117.2 0.2 140 430-576 154-310 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 8.5E-11 1.8E-15 104.7 5.5 130 26-167 14-147 (175)
31 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.5E-15 122.3 7.3 155 386-558 141-295 (394)
32 KOG0532 Leucine-rich repeat (L 99.1 4.4E-12 9.6E-17 127.2 -3.5 196 358-575 73-271 (722)
33 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.3E-15 120.6 8.1 199 363-582 96-295 (394)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.4E-10 5.2E-15 101.9 5.3 107 360-470 19-126 (175)
35 KOG1909 Ran GTPase-activating 99.0 3.2E-11 7E-16 114.2 -2.1 221 2-223 55-311 (382)
36 KOG1259 Nischarin, modulator o 99.0 8E-11 1.7E-15 108.8 -0.7 204 4-225 181-414 (490)
37 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.3E-15 122.5 -1.5 245 310-581 71-322 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.2E-14 79.4 2.8 59 517-575 2-60 (61)
39 KOG0531 Protein phosphatase 1, 98.8 5.6E-10 1.2E-14 117.1 -0.8 217 335-577 71-290 (414)
40 KOG2982 Uncharacterized conser 98.8 9.6E-10 2.1E-14 101.8 -0.6 64 135-198 198-262 (418)
41 PF13855 LRR_8: Leucine rich r 98.8 5.1E-09 1.1E-13 76.5 3.2 57 435-491 3-59 (61)
42 KOG1859 Leucine-rich repeat pr 98.7 3E-10 6.4E-15 117.3 -5.6 57 435-494 166-222 (1096)
43 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.6E-14 113.0 -5.9 129 80-223 163-292 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 1E-09 2.2E-14 101.6 -5.8 182 33-219 187-372 (419)
45 KOG4658 Apoptotic ATPase [Sign 98.6 3.9E-08 8.6E-13 110.3 5.3 149 56-217 523-675 (889)
46 KOG4658 Apoptotic ATPase [Sign 98.6 1.1E-07 2.3E-12 106.9 8.1 200 287-494 523-730 (889)
47 KOG2120 SCF ubiquitin ligase, 98.5 1.5E-09 3.1E-14 100.7 -6.6 184 6-196 186-374 (419)
48 KOG4341 F-box protein containi 98.4 7.2E-09 1.6E-13 100.8 -5.5 84 33-118 140-226 (483)
49 KOG4341 F-box protein containi 98.4 1E-08 2.3E-13 99.7 -5.2 265 7-298 140-437 (483)
50 KOG4579 Leucine-rich repeat (L 98.3 4E-08 8.6E-13 80.5 -2.7 133 435-582 29-164 (177)
51 KOG2982 Uncharacterized conser 98.2 7.2E-07 1.6E-11 83.2 3.0 188 28-225 68-264 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.6E-11 80.6 2.0 244 258-529 26-316 (388)
53 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.4E-11 80.9 1.4 217 4-223 29-285 (388)
54 KOG3665 ZYG-1-like serine/thre 98.1 2E-06 4.3E-11 94.2 3.6 153 31-192 122-282 (699)
55 PF13306 LRR_5: Leucine rich r 98.0 1.3E-05 2.8E-10 69.1 7.0 122 355-483 7-128 (129)
56 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.4E-11 96.2 0.2 200 6-217 61-282 (699)
57 PF13306 LRR_5: Leucine rich r 98.0 1.6E-05 3.6E-10 68.5 7.1 125 328-459 4-128 (129)
58 KOG4579 Leucine-rich repeat (L 98.0 5.2E-07 1.1E-11 74.1 -2.5 131 458-605 28-163 (177)
59 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.3E-10 52.9 4.2 38 5-45 1-38 (44)
60 KOG1644 U2-associated snRNP A' 97.9 1.3E-05 2.8E-10 70.8 4.9 129 8-146 22-150 (233)
61 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 69.7 5.6 112 103-220 37-150 (233)
62 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 52.5 3.1 36 517-553 2-37 (44)
63 PRK15386 type III secretion pr 97.7 0.00014 3E-09 73.5 8.8 54 335-395 51-104 (426)
64 PRK15386 type III secretion pr 97.7 0.00025 5.3E-09 71.7 10.1 32 433-467 156-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.4 0.00011 2.4E-09 68.2 2.7 107 30-143 42-150 (260)
66 KOG1947 Leucine rich repeat pr 97.0 0.00014 3.1E-09 78.7 -0.3 112 4-118 187-305 (482)
67 KOG1947 Leucine rich repeat pr 96.9 9.5E-05 2.1E-09 80.2 -2.5 138 27-169 184-330 (482)
68 KOG2123 Uncharacterized conser 96.8 6.4E-05 1.4E-09 69.8 -4.2 105 29-142 17-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00074 1.6E-08 62.8 2.4 83 410-494 44-129 (260)
70 KOG2123 Uncharacterized conser 96.6 0.00011 2.4E-09 68.3 -4.1 102 4-114 18-123 (388)
71 KOG4308 LRR-containing protein 95.1 0.00021 4.6E-09 75.1 -10.6 271 307-578 111-446 (478)
72 PF00560 LRR_1: Leucine Rich R 94.6 0.017 3.7E-07 31.7 1.0 12 518-529 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.2 0.021 4.5E-07 31.3 0.8 20 541-561 1-20 (22)
74 KOG4308 LRR-containing protein 93.9 0.0005 1.1E-08 72.4 -11.1 190 33-224 89-304 (478)
75 KOG3864 Uncharacterized conser 93.5 0.0094 2E-07 53.3 -2.2 33 33-66 103-135 (221)
76 TIGR00864 PCC polycystin catio 93.0 0.09 2E-06 65.1 4.1 77 546-628 1-78 (2740)
77 KOG0473 Leucine-rich repeat pr 90.8 0.0085 1.8E-07 54.6 -5.8 62 512-575 61-122 (326)
78 smart00369 LRR_TYP Leucine-ric 90.4 0.27 5.9E-06 28.1 2.3 16 540-555 2-17 (26)
79 smart00370 LRR Leucine-rich re 90.4 0.27 5.9E-06 28.1 2.3 16 540-555 2-17 (26)
80 smart00369 LRR_TYP Leucine-ric 90.2 0.21 4.4E-06 28.7 1.6 23 515-537 1-23 (26)
81 smart00370 LRR Leucine-rich re 90.2 0.21 4.4E-06 28.7 1.6 23 515-537 1-23 (26)
82 PF13504 LRR_7: Leucine rich r 89.5 0.24 5.1E-06 25.1 1.3 11 362-372 3-13 (17)
83 KOG3864 Uncharacterized conser 89.5 0.047 1E-06 49.0 -2.2 80 387-466 103-185 (221)
84 KOG0473 Leucine-rich repeat pr 87.1 0.027 5.8E-07 51.5 -5.3 87 453-553 38-124 (326)
85 KOG4242 Predicted myosin-I-bin 86.2 3.9 8.5E-05 42.1 8.6 190 31-227 165-371 (553)
86 smart00365 LRR_SD22 Leucine-ri 86.1 0.68 1.5E-05 26.5 1.9 17 4-20 1-17 (26)
87 PF13516 LRR_6: Leucine Rich r 85.4 0.31 6.7E-06 27.3 0.3 14 5-18 2-15 (24)
88 smart00368 LRR_RI Leucine rich 77.6 2.1 4.6E-05 25.0 2.0 14 32-45 3-16 (28)
89 PF08693 SKG6: Transmembrane a 72.8 4.4 9.6E-05 25.9 2.6 7 655-661 32-38 (40)
90 KOG3763 mRNA export factor TAP 71.9 3.4 7.4E-05 43.4 3.1 64 29-93 216-282 (585)
91 TIGR00864 PCC polycystin catio 71.7 2 4.4E-05 54.0 1.7 38 570-607 1-38 (2740)
92 KOG4242 Predicted myosin-I-bin 70.4 23 0.0005 36.7 8.4 58 518-575 415-479 (553)
93 smart00367 LRR_CC Leucine-rich 65.3 5.3 0.00011 22.7 1.7 10 6-15 3-12 (26)
94 smart00364 LRR_BAC Leucine-ric 60.8 6.1 0.00013 22.6 1.3 13 541-553 3-15 (26)
95 KOG3763 mRNA export factor TAP 60.0 5.6 0.00012 41.9 2.0 67 2-70 215-284 (585)
96 PF01102 Glycophorin_A: Glycop 48.1 7.4 0.00016 32.4 0.5 18 636-653 67-84 (122)
97 smart00082 LRRCT Leucine rich 48.0 4.4 9.6E-05 27.6 -0.7 9 608-616 29-37 (51)
98 PTZ00382 Variant-specific surf 45.0 37 0.00079 27.1 4.0 19 634-652 67-85 (96)
99 PF15102 TMEM154: TMEM154 prot 43.9 11 0.00023 32.3 0.8 9 652-660 78-86 (146)
100 PHA03099 epidermal growth fact 39.2 21 0.00046 29.5 1.8 29 640-668 107-135 (139)
101 PF08374 Protocadherin: Protoc 35.8 41 0.00089 30.9 3.3 24 633-656 38-61 (221)
102 PF15050 SCIMP: SCIMP protein 34.3 14 0.00031 29.9 0.2 30 635-664 9-38 (133)
103 PF04478 Mid2: Mid2 like cell 30.4 28 0.0006 30.1 1.2 12 634-645 50-61 (154)
104 PRK01844 hypothetical protein; 25.7 35 0.00075 25.2 0.9 25 641-665 10-34 (72)
105 PF02009 Rifin_STEVOR: Rifin/s 23.6 48 0.001 32.7 1.8 10 652-661 274-283 (299)
106 PF04971 Lysis_S: Lysis protei 23.6 46 0.001 24.2 1.2 31 632-662 32-62 (68)
107 PRK00523 hypothetical protein; 22.8 43 0.00093 24.7 0.9 23 643-665 13-35 (72)
108 PF12191 stn_TNFRSF12A: Tumour 20.3 63 0.0014 26.8 1.5 13 652-664 98-110 (129)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.3e-59 Score=541.39 Aligned_cols=542 Identities=30% Similarity=0.474 Sum_probs=457.6
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 84 (689)
.+++.|||++|.+++ ..+..|..+++|++|+|++|.+++.....+...+++|++|++++|.+.+.++. ..+++|+
T Consensus 69 ~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCC
Confidence 467788888888877 56777888888888888888877552334443378888888888887766553 4567888
Q ss_pred eeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCc
Q 040699 85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR 163 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 163 (689)
+|++++|.+ .+..+..+.. +++|++|++++| ..+. +|. .++++++|++|+|++|.+++..|..++.+++|+
T Consensus 144 ~L~Ls~n~~--~~~~p~~~~~-l~~L~~L~L~~n~l~~~----~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 144 TLDLSNNML--SGEIPNDIGS-FSSLKVLDLGGNVLVGK----IPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred EEECcCCcc--cccCChHHhc-CCCCCEEECccCccccc----CCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 888888887 5566666665 888888888887 3444 554 678888888888888888877788888888888
Q ss_pred EEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEe
Q 040699 164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLS 243 (689)
Q Consensus 164 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 243 (689)
+|++++|.+++.+|. .+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.+.
T Consensus 216 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~-------------------- 273 (968)
T PLN00113 216 WIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLS-------------------- 273 (968)
T ss_pred EEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeee--------------------
Confidence 888888888766666 67888888888888887765443 45677777888877776553
Q ss_pred ecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcC
Q 040699 244 LSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF 323 (689)
Q Consensus 244 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (689)
+..|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 274 --------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 274 --------GPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred --------ccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 345566777889999999999999888876 47899999999999999988888899999999999999999
Q ss_pred cccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcc
Q 040699 324 RGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFS 403 (689)
Q Consensus 324 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 403 (689)
.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|.... .+++|+.|++++|.+.+..+.
T Consensus 345 ~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 345 SGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred cCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeECCh
Confidence 8888876655 78999999999999988999999999999999999999977776654 499999999999999988888
Q ss_pred cccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCC
Q 040699 404 RNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLL 483 (689)
Q Consensus 404 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 483 (689)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ +.++|+.|++++|++.+..|..+..+++|
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 89999999999999999999888888899999999999999998888766 46899999999999999999999999999
Q ss_pred cEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699 484 QILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563 (689)
Q Consensus 484 ~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 563 (689)
++|++++|.+. +.+|..+.++++|++|++++|.+++.+|..|+.+++|+.|+|++|++++.+|..+..+
T Consensus 502 ~~L~Ls~N~l~-----------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 502 MQLKLSENKLS-----------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred CEEECcCCcce-----------eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 99999999876 4789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 564 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
++|+.+++++|++.+.+|.. .++.++....+.|||..|+.+
T Consensus 571 ~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 571 ESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 99999999999999999975 467788888999999999743
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-54 Score=507.52 Aligned_cols=521 Identities=32% Similarity=0.465 Sum_probs=448.1
Q ss_pred CCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCC
Q 040699 30 FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS 109 (689)
Q Consensus 30 ~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 109 (689)
..+++.|+|+++.+++...+.+.. +++|++|++++|.+.+.++...+..+++|++|++++|.+ .+.++. ..+++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l--~~~~p~---~~l~~ 141 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF--TGSIPR---GSIPN 141 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc--ccccCc---cccCC
Confidence 357888888888887764345555 888999999988887777765566888899999988887 455554 23778
Q ss_pred ccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCC
Q 040699 110 LKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE 188 (689)
Q Consensus 110 L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 188 (689)
|++|+|++| ..+. ++. .++++++|++|++++|.+.+..|..++++++|++|++++|.+++.+|. .+..+++|+
T Consensus 142 L~~L~Ls~n~~~~~----~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~ 215 (968)
T PLN00113 142 LETLDLSNNMLSGE----IPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLK 215 (968)
T ss_pred CCEEECcCCccccc----CCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCcc
Confidence 889998888 3333 554 688888899999988888888888888888899999988888866776 688888888
Q ss_pred EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEE
Q 040699 189 KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYAD 268 (689)
Q Consensus 189 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 268 (689)
+|++++|.+.+..+ ..+.++++|+.|++++|.+. +..|..+..+++|+.|+
T Consensus 216 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~----------------------------~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 216 WIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLT----------------------------GPIPSSLGNLKNLQYLF 266 (968)
T ss_pred EEECcCCccCCcCC-hhHhcCCCCCEEECcCceec----------------------------cccChhHhCCCCCCEEE
Confidence 88888888775444 45677788888888777553 34566677889999999
Q ss_pred ccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcC
Q 040699 269 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNAL 348 (689)
Q Consensus 269 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 348 (689)
+++|.+.+..|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+
T Consensus 267 L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l 344 (968)
T PLN00113 267 LYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKF 344 (968)
T ss_pred CcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCC
Confidence 99999998888774 78899999999999999888888899999999999999998777776554 89999999999999
Q ss_pred CccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccccc
Q 040699 349 DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQS 428 (689)
Q Consensus 349 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 428 (689)
.+..|..+..+++|+.|++++|++.+.+|..... +++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 9889999999999999999999999888876654 889999999999999888888999999999999999999889999
Q ss_pred ccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCC
Q 040699 429 LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPI 508 (689)
Q Consensus 429 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~ 508 (689)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|+++ +..
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~-----------~~~ 491 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS-----------GAV 491 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC-----------Ccc
Confidence 9999999999999999999999888899999999999999998888766 4588999999888876 478
Q ss_pred chhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCcccccc
Q 040699 509 PPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFA 588 (689)
Q Consensus 509 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 588 (689)
|..+.++++|+.|++++|++.+.+|..+.++++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 571 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred ccCcccccCCcCCCCCCC
Q 040699 589 TFNENSYEGNTFLCGLPL 606 (689)
Q Consensus 589 ~~~~~~~~~n~~~c~~~~ 606 (689)
.++.+++.+|++.+..|.
T Consensus 572 ~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 572 SLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccCEEeccCCcceeeCCC
Confidence 999999999998876653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-43 Score=344.21 Aligned_cols=417 Identities=22% Similarity=0.264 Sum_probs=309.1
Q ss_pred CEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeecc
Q 040699 139 QELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYAD 218 (689)
Q Consensus 139 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 218 (689)
+.|++++|.+....+..|.++++|+.+++.+|.++ .+|. ......+++.|+|.+|.++. +.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~s-v~---------------- 141 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISS-VT---------------- 141 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeecccccc-cc----------------
Confidence 44666666666666666666666666666666666 5665 22223346666665555441 11
Q ss_pred CCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCC
Q 040699 219 NNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298 (689)
Q Consensus 219 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 298 (689)
.+.+...+.|+.+|++.|.++ .+|...|..-.++++|+|+.|.
T Consensus 142 ------------------------------------se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 142 ------------------------------------SEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNR 184 (873)
T ss_pred ------------------------------------HHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccc
Confidence 122344567888899988887 5555545666788999999999
Q ss_pred CCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchh
Q 040699 299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE 378 (689)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 378 (689)
|+.+....|.++.+|..|.|+.|.++ .+|...|..+++|+.|+|..|.|.-.-.-+|.++++|+.|.+..|.+. .+..
T Consensus 185 It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~D 262 (873)
T KOG4194|consen 185 ITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDD 262 (873)
T ss_pred ccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccC
Confidence 98888888888888888999999888 888888888888889998888887544567888888888888888887 8888
Q ss_pred hhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCC
Q 040699 379 HLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTR 458 (689)
Q Consensus 379 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 458 (689)
++|.++.++++|+|+.|++......++.++++|+.|+++.|.|..+-++.+..+++|++|+|++|+|+...+++|..+..
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888777788888888
Q ss_pred CcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccC
Q 040699 459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN 538 (689)
Q Consensus 459 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 538 (689)
|++|+|++|+++.+...+|..+++|++|||++|.++..+ ..-...|.++++|+.|++.+|++..+...+|.+
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I--------EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI--------EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE--------ecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 888888888888777777888888888888888776311 012344777888888888888888777778888
Q ss_pred CCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC-CccccccccCcccccCCcCCCCCCCCCCCCCCCCCc
Q 040699 539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSE 617 (689)
Q Consensus 539 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~ 617 (689)
+..|++|||.+|.|..+.|++|..+ .|+.|.+..-.+.|.|. .|+.+|. + ++... ......|+.|++..+
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl------~-~~~lq-~sv~a~CayPe~Lad 485 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL------Y-RRKLQ-SSVIAKCAYPEPLAD 485 (873)
T ss_pred CcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH------H-hcccc-cceeeeccCCccccc
Confidence 8888888888888888888888777 77777777666666653 2333221 1 11111 111227888988888
Q ss_pred ccCCCCCCCCccc
Q 040699 618 ASIGNERDDNLID 630 (689)
Q Consensus 618 ~~~~~~~~~~~~~ 630 (689)
.++.+.+..++.|
T Consensus 486 ~~i~svd~~~lvC 498 (873)
T KOG4194|consen 486 QSIVSVDTANLVC 498 (873)
T ss_pred ceeEeechhhcee
Confidence 8777777666554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-41 Score=331.53 Aligned_cols=392 Identities=22% Similarity=0.260 Sum_probs=322.9
Q ss_pred CCeeeCCCCccccCCccc-hhh-hhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCC
Q 040699 83 LEHLDMSSTRIALNTSFL-QII-GESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMT 160 (689)
Q Consensus 83 L~~L~L~~~~~~~~~~~~-~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 160 (689)
-+.|+.+...+ ..+. ..+ +-..+.-+.|++++|.... +....|.++++|+++++.+|.++ .+|..-+...
T Consensus 54 ~~lldcs~~~l---ea~~~~~l~g~lp~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg 125 (873)
T KOG4194|consen 54 TRLLDCSDREL---EAIDKSRLKGFLPSQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG 125 (873)
T ss_pred ceeeecCcccc---ccccccccCCcCccceeeeecccccccc----CcHHHHhcCCcceeeeeccchhh-hccccccccc
Confidence 35678888776 2211 111 1113456789999996555 55557899999999999999998 7787777777
Q ss_pred CCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccc
Q 040699 161 SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS 240 (689)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 240 (689)
+|+.|+|.+|.|+ .+....++.++.|+.|||+.|.++ .++...+..-.++++|++++|
T Consensus 126 hl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N-------------------- 183 (873)
T KOG4194|consen 126 HLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASN-------------------- 183 (873)
T ss_pred ceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccc--------------------
Confidence 8999999999998 777778899999999999999887 344333434444455554444
Q ss_pred eEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccC
Q 040699 241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN 320 (689)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (689)
+++ .+....|..+.+|..|.|+.|+++...+..|.++++|+.|+|..
T Consensus 184 --------------------------------~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 184 --------------------------------RIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred --------------------------------ccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 443 22233366778899999999999998888999999999999999
Q ss_pred CcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCcc
Q 040699 321 NNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH 400 (689)
Q Consensus 321 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 400 (689)
|+|. .+..-.|.++++|+.|.+..|.+.....++|.++.++++|+|+.|++. .+.+....++.+|+.|++++|.|..+
T Consensus 231 N~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 231 NRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhhee
Confidence 9997 666667888999999999999999888889999999999999999998 77777666799999999999999999
Q ss_pred CcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC---Ccccc
Q 040699 401 MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP---IPVEF 477 (689)
Q Consensus 401 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~ 477 (689)
....+..+++|+.|+|++|.++...++.|..+..|++|+|++|++......+|.++.+|+.|+|++|.++.. ....|
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 999999999999999999999988899999999999999999999977788999999999999999998753 34558
Q ss_pred cCCCCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699 478 CQLDLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552 (689)
Q Consensus 478 ~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 552 (689)
..+++|+.|++.+|++. .+| .+|.++++|+.|||.+|.|..+.|++|..+ .|+.|.+..-.+
T Consensus 389 ~gl~~LrkL~l~gNqlk------------~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLK------------SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred ccchhhhheeecCceee------------ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 88999999999999987 444 579999999999999999999999999988 898888765443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=300.47 Aligned_cols=477 Identities=23% Similarity=0.330 Sum_probs=255.9
Q ss_pred CCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCcc
Q 040699 32 NLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLK 111 (689)
Q Consensus 32 ~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~ 111 (689)
.|..+.+++|.+... .+.+.. ++.+.+|++++|.+....+ +++.+..++.|+.++|++ .+++..++. +.+|+
T Consensus 46 ~l~~lils~N~l~~l-~~dl~n-L~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~l---s~lp~~i~s-~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-REDLKN-LACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKL---SELPEQIGS-LISLV 117 (565)
T ss_pred chhhhhhccCchhhc-cHhhhc-ccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchH---hhccHHHhh-hhhhh
Confidence 345555555554443 333444 5555555555555542221 445555555555555555 444555544 55555
Q ss_pred EEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEe
Q 040699 112 YLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLY 191 (689)
Q Consensus 112 ~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 191 (689)
.++.++|.... +++ +++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++. ..++..+. ++.|++||
T Consensus 118 ~l~~s~n~~~e----l~~-~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld 189 (565)
T KOG0472|consen 118 KLDCSSNELKE----LPD-SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLD 189 (565)
T ss_pred hhhccccceee----cCc-hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcc
Confidence 55555552222 333 4555555555555555555 44555555555555555555555 44442222 55555555
Q ss_pred ccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccC
Q 040699 192 LSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSH 271 (689)
Q Consensus 192 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 271 (689)
...|.+. .++ ..++.+.+|..|++..|.+. ..| .+..|..|..++++.
T Consensus 190 ~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~-----------------------------~lP-ef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 190 CNSNLLE-TLP-PELGGLESLELLYLRRNKIR-----------------------------FLP-EFPGCSLLKELHVGE 237 (565)
T ss_pred cchhhhh-cCC-hhhcchhhhHHHHhhhcccc-----------------------------cCC-CCCccHHHHHHHhcc
Confidence 5555443 122 23444455555555544332 111 233344444455554
Q ss_pred CcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCcc
Q 040699 272 IKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS 351 (689)
Q Consensus 272 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 351 (689)
|.+. .+|+....+++++..||+++|+++. .|..+.-+.+|+.||+++|.++ ..|...+. + .|+.|.+.+|.+..+
T Consensus 238 N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 238 NQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTI 312 (565)
T ss_pred cHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHH
Confidence 4443 4444444444555555555554443 2333334444444555555444 34443333 2 444444444444311
Q ss_pred ccccccCCC--CCcEE-------eccCCc----ccccchhhhh---cCCCCCCEEEccCCcCCccCcccccC--CCCccE
Q 040699 352 IPSSFGNMN--FLRIL-------DLSNNQ----LTGEIPEHLA---VGCVNLESLVLSNNSLKGHMFSRNFN--LANLMS 413 (689)
Q Consensus 352 ~~~~~~~l~--~L~~L-------~l~~n~----l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~ 413 (689)
-.+.+.+-+ -|++| .++... -.+..+...| ....+.+.|++++-+++.++.+.|.. -.-...
T Consensus 313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence 000000000 00000 000000 0000000000 11335566666666666655554432 223667
Q ss_pred EeccCCcccccccccccCCCCCCE-EECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699 414 LQLEGNHFIGEISQSLSKCSSLEG-LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492 (689)
Q Consensus 414 L~L~~n~~~~~~~~~~~~l~~L~~-L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 492 (689)
.++++|++. .+|..+..+..+.+ +.+++|.+. .+|..+..+++|..|++++|.+. .+|..+..+..|+.|+++.|+
T Consensus 393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred EecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc
Confidence 777777765 45555555554443 445555554 66777777888888888888776 567777777778888888887
Q ss_pred cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 572 (689)
Q Consensus 493 ~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 572 (689)
+. .+|+.+..+..++.+-.++|++..+.|+.+.++.+|..|||.+|.+. .+|..++++++|++|++.
T Consensus 470 Fr------------~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 470 FR------------MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELD 536 (565)
T ss_pred cc------------cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEec
Confidence 76 67888777777888877888888777777888888888888888887 567778888888888888
Q ss_pred CCcCc
Q 040699 573 YNNLS 577 (689)
Q Consensus 573 ~N~l~ 577 (689)
||||.
T Consensus 537 gNpfr 541 (565)
T KOG0472|consen 537 GNPFR 541 (565)
T ss_pred CCccC
Confidence 88887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.2e-38 Score=296.52 Aligned_cols=476 Identities=26% Similarity=0.340 Sum_probs=375.2
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 84 (689)
.-++.+++++|.+.. +.+++.++..|.+|++++|+++.. .+++.+ +..++.++.++|.+.. ++. .+..+.+|+
T Consensus 45 v~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~-l~~l~~l~vs~n~ls~-lp~-~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQL-PAAIGE-LEALKSLNVSHNKLSE-LPE-QIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhC-CHHHHH-HHHHHHhhcccchHhh-ccH-HHhhhhhhh
Confidence 457789999998877 456789999999999999999875 667777 8999999999999874 443 678889999
Q ss_pred eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcE
Q 040699 85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI 164 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 164 (689)
.|+.++|.+ .+.+..++. +-.|..++..+|.+.. +|+ ++.++.+|..+++.+|++....|. .-.++.|++
T Consensus 118 ~l~~s~n~~---~el~~~i~~-~~~l~dl~~~~N~i~s----lp~-~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ 187 (565)
T KOG0472|consen 118 KLDCSSNEL---KELPDSIGR-LLDLEDLDATNNQISS----LPE-DMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKH 187 (565)
T ss_pred hhhccccce---eecCchHHH-Hhhhhhhhcccccccc----Cch-HHHHHHHHHHhhccccchhhCCHH-HHHHHHHHh
Confidence 999999998 778888888 8899999999886655 776 899999999999999999954444 444999999
Q ss_pred EEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEee
Q 040699 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSL 244 (689)
Q Consensus 165 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 244 (689)
||...|.+. .+|+ .++.+.+|+.|++..|.+.. .+ .|.+++.|++++++.|.+...
T Consensus 188 ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~~l------------------- 243 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIEML------------------- 243 (565)
T ss_pred cccchhhhh-cCCh-hhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHHhh-------------------
Confidence 999999997 8998 79999999999999999883 33 678899999999999877532
Q ss_pred cccCCCCCCCCcc-ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcC
Q 040699 245 SSSYGDGFIFPKF-LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF 323 (689)
Q Consensus 245 ~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (689)
|.. ...+.++..||+.+|++. ++|..+ ..+.+|+.||+++|.+++ .|..++++ .|+.|.+.+|.+
T Consensus 244 ----------pae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 244 ----------PAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ----------HHHHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 222 236778999999999998 677764 577899999999999997 45678888 899999999988
Q ss_pred cccCChhhhhc-----CCCceEE----EccCCcCC----cc-cc---ccccCCCCCcEEeccCCcccccchhhhhcCCC-
Q 040699 324 RGHIPLEIGDI-----LPSLHVF----NISMNALD----GS-IP---SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV- 385 (689)
Q Consensus 324 ~~~~~~~~~~~-----~~~L~~L----~l~~n~l~----~~-~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~- 385 (689)
. .+..++..+ ++.|+.- -++...-+ .. .+ .....+.+.+.|++++-+++ .+|..+|..-.
T Consensus 310 r-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~ 387 (565)
T KOG0472|consen 310 R-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS 387 (565)
T ss_pred H-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh
Confidence 6 343333221 1222220 01111000 00 11 12234567899999999998 99999987332
Q ss_pred -CCCEEEccCCcCCccCcccccCCCCccE-EeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEE
Q 040699 386 -NLESLVLSNNSLKGHMFSRNFNLANLMS-LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII 463 (689)
Q Consensus 386 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 463 (689)
-....++++|++.+.+ ..+..+..+.+ +.+++|. .+.+|..++.+++|..|++++|.+. .+|..++++..|+.|+
T Consensus 388 ~~Vt~VnfskNqL~elP-k~L~~lkelvT~l~lsnn~-isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELP-KRLVELKELVTDLVLSNNK-ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLN 464 (565)
T ss_pred cceEEEecccchHhhhh-hhhHHHHHHHHHHHhhcCc-cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheec
Confidence 2778999999998644 33444444443 4555555 4567888899999999999999887 7898899999999999
Q ss_pred cCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCC
Q 040699 464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVE 543 (689)
Q Consensus 464 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 543 (689)
++.|++. ..|.....+..++.+-.++|++.. ..|..+.+|.+|.+|||.+|.+. .+|+.++++++|+
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~-----------vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGS-----------VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccc-----------cChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 9999998 788888888888888888888762 34445999999999999999998 7888999999999
Q ss_pred EEeCcCCcCC
Q 040699 544 SLDLSNNKLN 553 (689)
Q Consensus 544 ~L~L~~N~l~ 553 (689)
+|.+.+|++.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-34 Score=300.00 Aligned_cols=484 Identities=23% Similarity=0.261 Sum_probs=299.2
Q ss_pred EeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCC
Q 040699 10 LYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMS 89 (689)
Q Consensus 10 L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 89 (689)
+|+|..++.. +|..+.....+..|++..|.+-...++.+.+ .-+|+.|++++|++... |. .+..+.+|+.|+++
T Consensus 3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNLS 76 (1081)
T ss_pred cccccccCcc---cchhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccccccC-Cc-hhhhHHHHhhcccc
Confidence 5666665554 5766766677888888887665543444444 34488888888877633 22 45667778888888
Q ss_pred CCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccc
Q 040699 90 STRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY 169 (689)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 169 (689)
.|.| ...+..... +.+|+++.|.+|.... +|. .+..+.+|++|++++|.+. .+|..+..++.+..+..++
T Consensus 77 ~n~i---~~vp~s~~~-~~~l~~lnL~~n~l~~----lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 77 RNYI---RSVPSSCSN-MRNLQYLNLKNNRLQS----LPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred hhhH---hhCchhhhh-hhcchhheeccchhhc----Cch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhc
Confidence 8777 444444444 7777777777774444 554 6777777777777777776 5666777777777777777
Q ss_pred eeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCC
Q 040699 170 NQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYG 249 (689)
Q Consensus 170 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (689)
|.-...++. .. ++.+++..|.+...+. .....+.. .+++.+|.+..
T Consensus 147 N~~~~~lg~-----~~-ik~~~l~~n~l~~~~~-~~i~~l~~--~ldLr~N~~~~------------------------- 192 (1081)
T KOG0618|consen 147 NEKIQRLGQ-----TS-IKKLDLRLNVLGGSFL-IDIYNLTH--QLDLRYNEMEV------------------------- 192 (1081)
T ss_pred chhhhhhcc-----cc-chhhhhhhhhcccchh-cchhhhhe--eeecccchhhh-------------------------
Confidence 721112222 11 5666666665543322 12222222 46666665431
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCCh
Q 040699 250 DGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPL 329 (689)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 329 (689)
..+..+.+|+.+....|.+... -..-++++.|+..+|.++..... ....+|+++++++|+++ .+|.
T Consensus 193 ------~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~ 258 (1081)
T KOG0618|consen 193 ------LDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPE 258 (1081)
T ss_pred ------hhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchH
Confidence 1122344555555555544311 11335666666666666632221 12246777777777776 6665
Q ss_pred hhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCC
Q 040699 330 EIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA 409 (689)
Q Consensus 330 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 409 (689)
++.. +.+|+.+...+|.++ ..|..+...++|+.|.+..|.+. .+|..... +..|++|+|..|.+.......+.-..
T Consensus 259 wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 259 WIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLN 334 (1081)
T ss_pred HHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhh
Confidence 5544 667777777777774 45666666677777777777776 66655443 66777777777777655544443333
Q ss_pred C-ccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEec
Q 040699 410 N-LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 488 (689)
Q Consensus 410 ~-L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 488 (689)
. |..|+.+.|++.......=...+.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.+++.|++|++
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 3 566666666654332222223456777777777777666666777777777888877777555566777777777777
Q ss_pred cccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCE
Q 040699 489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 568 (689)
Q Consensus 489 ~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 568 (689)
|+|.++ .+|+.+..++.|++|...+|++. ..| .+.+++.|+.+|++.|+++...-..-.+.++|++
T Consensus 415 SGNkL~------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 415 SGNKLT------------TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred ccchhh------------hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 777776 56777777777777777777776 455 5677777777777777777543222223367777
Q ss_pred EeccCCc
Q 040699 569 FSVAYNN 575 (689)
Q Consensus 569 L~l~~N~ 575 (689)
||++||.
T Consensus 481 LdlSGN~ 487 (1081)
T KOG0618|consen 481 LDLSGNT 487 (1081)
T ss_pred eeccCCc
Confidence 7777775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-33 Score=293.12 Aligned_cols=487 Identities=24% Similarity=0.285 Sum_probs=288.5
Q ss_pred CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCee
Q 040699 7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL 86 (689)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 86 (689)
+..|+++.|.+-.. . .+....+-+|+.|++++|.++.... .+.. +++|+.|.++.|.+... + ....++++|++|
T Consensus 23 ~~~ln~~~N~~l~~-p-l~~~~~~v~L~~l~lsnn~~~~fp~-~it~-l~~L~~ln~s~n~i~~v-p-~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSR-P-LEFVEKRVKLKSLDLSNNQISSFPI-QITL-LSHLRQLNLSRNYIRSV-P-SSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccccccC-c-hHHhhheeeeEEeeccccccccCCc-hhhh-HHHHhhcccchhhHhhC-c-hhhhhhhcchhh
Confidence 45566666654441 1 2333445557777777776665311 3333 56677777777776533 2 256667777777
Q ss_pred eCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEE
Q 040699 87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY 166 (689)
Q Consensus 87 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 166 (689)
.|.+|.+ ...|..+.+ +.+|++|++|.|..+. +|. .+..+..++.+..++|.-....+.. .++.++
T Consensus 97 nL~~n~l---~~lP~~~~~-lknl~~LdlS~N~f~~----~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~-----~ik~~~ 162 (1081)
T KOG0618|consen 97 NLKNNRL---QSLPASISE-LKNLQYLDLSFNHFGP----IPL-VIEVLTAEEELAASNNEKIQRLGQT-----SIKKLD 162 (1081)
T ss_pred eeccchh---hcCchhHHh-hhcccccccchhccCC----Cch-hHHhhhHHHHHhhhcchhhhhhccc-----cchhhh
Confidence 7777765 555666665 6777777777774444 554 5666666667777776222122221 166666
Q ss_pred ccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecc
Q 040699 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 246 (689)
Q Consensus 167 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~ 246 (689)
+..|.+.+.+.. .+..+.. .|++++|.+. . ..+..+.+|+.+....|.+. .+.+
T Consensus 163 l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls-----------------~l~~-- 216 (1081)
T KOG0618|consen 163 LRLNVLGGSFLI-DIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLS-----------------ELEI-- 216 (1081)
T ss_pred hhhhhcccchhc-chhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccc-----------------eEEe--
Confidence 666666655554 4444444 5777777654 1 23445555665555555332 1211
Q ss_pred cCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCccc
Q 040699 247 SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGH 326 (689)
Q Consensus 247 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 326 (689)
..++++.|+.+.|.+....+. ..-.++++++++.+.+.+.. .+...+.+|+.++..+|.++ .
T Consensus 217 -------------~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~ 278 (1081)
T KOG0618|consen 217 -------------SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-A 278 (1081)
T ss_pred -------------cCcchheeeeccCcceeeccc---cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-h
Confidence 123445555555544421111 12345566666666665533 55556666666666666665 5
Q ss_pred CChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCC-CCEEEccCCcCCccCcccc
Q 040699 327 IPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVN-LESLVLSNNSLKGHMFSRN 405 (689)
Q Consensus 327 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~ 405 (689)
+|...+. ..+|+.|....|.+. -+|....++..|++|++..|++. .+|...+.-... |+.+..+.|.+.......-
T Consensus 279 lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 279 LPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred hHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 6655554 456666666666665 34455566667777777777765 666655543333 5666666666655443333
Q ss_pred cCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699 406 FNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 485 (689)
Q Consensus 406 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 485 (689)
...+.|+.|++.+|.++...-..+.+.+.|++|+|++|++.......+..++.|+.|++++|+++ .+|.+...++.|++
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT 434 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence 44666777777777777666666777777777777777776444455666777777777777777 45577777777777
Q ss_pred EeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCC
Q 040699 486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 565 (689)
Q Consensus 486 L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 565 (689)
|..-+|++. ..| .+..++.|+.+|++.|+++...-..-..-++|++|||++|.-.......|..+..
T Consensus 435 L~ahsN~l~------------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 435 LRAHSNQLL------------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred HhhcCCcee------------ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence 777777765 455 5667777777777777776433222222267777777777754444455555566
Q ss_pred CCEEeccCC
Q 040699 566 LEVFSVAYN 574 (689)
Q Consensus 566 L~~L~l~~N 574 (689)
+...++.-|
T Consensus 502 l~~~~i~~~ 510 (1081)
T KOG0618|consen 502 LSQMDITLN 510 (1081)
T ss_pred hhheecccC
Confidence 666665555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.8e-32 Score=271.21 Aligned_cols=343 Identities=27% Similarity=0.363 Sum_probs=294.5
Q ss_pred CCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcc-cCChh
Q 040699 252 FIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRG-HIPLE 330 (689)
Q Consensus 252 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~ 330 (689)
+.+|.....++.++.|.+.+..+. .+|+.+ +.+.+|++|.+.+|++..+. ..+..++.|+.+.+.+|++.. -||.+
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch
Confidence 567888888899999999888876 677774 88899999999999887654 356778899999999998764 47888
Q ss_pred hhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCC
Q 040699 331 IGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410 (689)
Q Consensus 331 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 410 (689)
+|. +..|+.|++++|.+. ..|..+....++-.|++|+|+|. .||..+|.++..|-.|+|++|++...+| .+..+..
T Consensus 99 iF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~ 174 (1255)
T KOG0444|consen 99 IFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSM 174 (1255)
T ss_pred hcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhh
Confidence 887 788999999999988 57788888889999999999998 9999999889999999999999876544 4567889
Q ss_pred ccEEeccCCcccccccccccCCCCCCEEECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecc
Q 040699 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489 (689)
Q Consensus 411 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 489 (689)
|++|.|++|++....-..+..+++|++|.+++.+-+ ..+|.++.++.+|..++++.|.+. ..|+++..+++|+.|+||
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence 999999999886555566778889999999987544 467888999999999999999988 789999999999999999
Q ss_pred ccccccc------------cccCCCcccCCCchhhccccccceEeccCccccc-CCcccccCCCCCCEEeCcCCcCCCCC
Q 040699 490 DNNISGR------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNGKI 556 (689)
Q Consensus 490 ~n~~~~~------------l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~ 556 (689)
+|.++.- |++|+|+++ ..|.++..++.|+.|.+.+|+++. -+|+.++.+..|+.+..++|.+. ..
T Consensus 254 ~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV 331 (1255)
T KOG0444|consen 254 GNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV 331 (1255)
T ss_pred cCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence 9998752 889999998 789999999999999999999863 47899999999999999999998 88
Q ss_pred chhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699 557 PHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 557 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
|+++..+..|+.|.|+.|++. +.|+.+-.+..+..+++..||-+--.|
T Consensus 332 PEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999998 788888788899999999999776544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-31 Score=266.17 Aligned_cols=251 Identities=30% Similarity=0.380 Sum_probs=148.1
Q ss_pred ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC
Q 040699 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS 337 (689)
Q Consensus 258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 337 (689)
+..-+++-+|++++|.+. .+|..+|.+++.|-.|++++|++.. .|.....+..|++|++++|.+.. ..-.-...+++
T Consensus 122 LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmts 198 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTS 198 (1255)
T ss_pred hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchh
Confidence 334455556666666665 5666666677777777777776664 34455666677777777776541 11111112455
Q ss_pred ceEEEccCCcCC-ccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699 338 LHVFNISMNALD-GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416 (689)
Q Consensus 338 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (689)
|+.|.+++.+-+ ..+|.++.++.+|..+|+|.|.+. .+|++++. +++|+.|+|++|.++... ...+...+|++|++
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITELN-MTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeeee-ccHHHHhhhhhhcc
Confidence 666666665432 346667777777777777777776 77777765 777777777777766422 22334455666666
Q ss_pred cCCcccccccccccCCCCCCEEECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495 (689)
Q Consensus 417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 495 (689)
+.|+++ .+|..+..++.|+.|.+.+|+++ ..+|+.++.+.+|+.+...+|.+. ..|..++.|+.|+.|.|+.|++.
T Consensus 276 SrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi- 352 (1255)
T KOG0444|consen 276 SRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI- 352 (1255)
T ss_pred ccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-
Confidence 666654 44555666666666666666554 334555555555555555555554 55555555555555555555544
Q ss_pred ccccCCCcccCCCchhhccccccceEeccCccc
Q 040699 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDL 528 (689)
Q Consensus 496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 528 (689)
..|+++.-++.|+.||+..|.-
T Consensus 353 -----------TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 353 -----------TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -----------echhhhhhcCCcceeeccCCcC
Confidence 4555555555555555555543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-28 Score=230.37 Aligned_cols=300 Identities=20% Similarity=0.209 Sum_probs=242.9
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccC-CcccccchhhhhcCCCCCCE
Q 040699 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSN-NQLTGEIPEHLAVGCVNLES 389 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 389 (689)
+.-..++|..|+|+ .+|+..|..+++|+.|+|++|.|+.+.|++|.++.++..|-+.+ |+|+ .+|...|.++.+|+.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 45678999999998 89999999999999999999999999999999999998887766 8998 999999999999999
Q ss_pred EEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC------------CcCChhhcCCC
Q 040699 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS------------GKIPRWLGDLT 457 (689)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~------------~~~~~~l~~l~ 457 (689)
|.+.-|++..+....|..+++|..|.+.+|.+..+....|..+.+++.+.+..|.+. ...|..+++..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 999999999988899999999999999999987666668999999999999988732 23444556666
Q ss_pred CCcEEEcCCCccccCCcccccCC-CCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCcccccCCccc
Q 040699 458 RLQYIIMPNNHLEGPIPVEFCQL-DLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSIPST 535 (689)
Q Consensus 458 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 535 (689)
...-..+.+.++..+.+..|... .++..--.+.+.. .+..| ..|..+++|++|+|++|+++++-+.+
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~-----------d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP-----------DSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-----------CCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 66666666666655444444321 1221111112211 11334 45899999999999999999999999
Q ss_pred ccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC--------
Q 040699 536 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP-------- 607 (689)
Q Consensus 536 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-------- 607 (689)
|.++..+++|+|..|+|.......|..+..|+.|+|.+|++++..|..+.....+..+.+-+|||.|+|.+.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 999999999999999999888888999999999999999999999998888888899999999999998654
Q ss_pred -------CCCCCCCCCcccCCCC
Q 040699 608 -------ICRSPATMSEASIGNE 623 (689)
Q Consensus 608 -------~c~~~~~~~~~~~~~~ 623 (689)
.|++|...++.++.+.
T Consensus 374 ~~~~~~~~Cq~p~~~~~~~~~dv 396 (498)
T KOG4237|consen 374 KSVVGNPRCQSPGFVRQIPISDV 396 (498)
T ss_pred CCCCCCCCCCCCchhccccchhc
Confidence 6988877766655443
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=9.9e-27 Score=220.22 Aligned_cols=389 Identities=21% Similarity=0.235 Sum_probs=201.4
Q ss_pred CccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccc-eeeeeecCcccccCCCCC
Q 040699 109 SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY-NQLTGSISSSPLVHLTSI 187 (689)
Q Consensus 109 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L 187 (689)
.-..++|..|.+.. +|+++|..+++|+.|||++|.|+.+.|++|.++.+|..|.+.+ |+|+ .++.+.|.++..+
T Consensus 68 ~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 34455555554444 6666666666666666666666666666666666655554444 5665 5665566666666
Q ss_pred CEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEE
Q 040699 188 EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYA 267 (689)
Q Consensus 188 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 267 (689)
+.|.+.-|.+.. +....+..++ ++..|
T Consensus 143 qrLllNan~i~C-ir~~al~dL~----------------------------------------------------~l~lL 169 (498)
T KOG4237|consen 143 QRLLLNANHINC-IRQDALRDLP----------------------------------------------------SLSLL 169 (498)
T ss_pred HHHhcChhhhcc-hhHHHHHHhh----------------------------------------------------hcchh
Confidence 655555554442 1112333333 33334
Q ss_pred EccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCC------------CCCCCCCCCCCcCEEEccCCcCcccCChhhhh-c
Q 040699 268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG------------PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD-I 334 (689)
Q Consensus 268 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~ 334 (689)
.+.+|.+. .++...|..+..++.+.+..|.+.. ..+..+++........+.+.++. .++..-+. .
T Consensus 170 slyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~ 247 (498)
T KOG4237|consen 170 SLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCS 247 (498)
T ss_pred cccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhh
Confidence 44444333 2333234455566666666655221 11222333333333444444444 33322222 1
Q ss_pred CCCce-EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccE
Q 040699 335 LPSLH-VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS 413 (689)
Q Consensus 335 ~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 413 (689)
...+. .+.-..+.........|..+++|++|++++|+++ .+.+..|.+..++++|.|..|++..+....|.++..|++
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 11111 1122222222222335667777777777777776 667777777777777777777777666667777777777
Q ss_pred EeccCCcccccccccccCCCCCCEEECCCCCCCC-cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492 (689)
Q Consensus 414 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 492 (689)
|+|++|+|+...|.+|..+.+|.+|++-.|++.- ---.|++. .|.+.+..+..| -+....++.+++++..
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~ 397 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVGNPR--CQSPGFVRQIPISDVA 397 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCCCCC--CCCCchhccccchhcc
Confidence 7777777777777777777777777776665430 00011110 000001001100 0112233444444433
Q ss_pred cccc--------------------------cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699 493 ISGR--------------------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD 546 (689)
Q Consensus 493 ~~~~--------------------------l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 546 (689)
+... ...|.+.+. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .++
T Consensus 398 ~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~d 470 (498)
T KOG4237|consen 398 FGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLD 470 (498)
T ss_pred ccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcc
Confidence 3211 223333332 3333222 24556778888887 44444 45667 788
Q ss_pred CcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699 547 LSNNKLNGKIPHQLVELKTLEVFSVAYN 574 (689)
Q Consensus 547 L~~N~l~~~~~~~~~~l~~L~~L~l~~N 574 (689)
+++|+|+......|.+++.|.+|-+++|
T Consensus 471 ls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 471 LSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccCceehhhcccccchhhhheeEEecC
Confidence 8888887666667777788888877765
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=229.30 Aligned_cols=347 Identities=18% Similarity=0.188 Sum_probs=159.0
Q ss_pred ccccCCCCCCCEEeCCCCcC------ccCCCccccCCC-CCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeec
Q 040699 129 DQGLCSLMHLQELYMADNDL------RGSLPWCLANMT-SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201 (689)
Q Consensus 129 ~~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 201 (689)
..+|.++++|+.|.+..+.. ....|..|..++ +|+.|++.++.+. .+|. .| ...+|+.|++.+|.+.. .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-c
Confidence 34566666777766654422 223455555543 4666666666665 5555 23 34566666666665542 1
Q ss_pred CcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChH
Q 040699 202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW 281 (689)
Q Consensus 202 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 281 (689)
+ ..+..+++|+.++++++... ..+| .+..+++|+.|++++|.....+|..
T Consensus 627 ~-~~~~~l~~Lk~L~Ls~~~~l----------------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 627 W-DGVHSLTGLRNIDLRGSKNL----------------------------KEIP-DLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred c-cccccCCCCCEEECCCCCCc----------------------------CcCC-ccccCCcccEEEecCCCCccccchh
Confidence 1 22334455555555443211 1111 1334455666666655544455544
Q ss_pred HHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCC
Q 040699 282 LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF 361 (689)
Q Consensus 282 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 361 (689)
+..+++|+.|++++|..-...|..+ ++++|+.|++++|.....+|. ..++|+.|++++|.+. .+|..+ .+++
T Consensus 677 -i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~ 748 (1153)
T PLN03210 677 -IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLEN 748 (1153)
T ss_pred -hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccc
Confidence 2455555555555543222223222 345555555555533222221 1234455555554443 223222 2344
Q ss_pred CcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN 441 (689)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 441 (689)
|+.|.+.++... .+.. .+....+..+...++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 749 L~~L~l~~~~~~-~l~~-----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 749 LDELILCEMKSE-KLWE-----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred cccccccccchh-hccc-----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 444444432211 0000 0000011111223455555555555444455555555555555555
Q ss_pred CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceE
Q 040699 442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL 521 (689)
Q Consensus 442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L 521 (689)
+|...+.+|... .+++|+.|++++|......|.. .++|++|++++|.++ .+|..+..+++|+.|
T Consensus 811 ~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~------------~iP~si~~l~~L~~L 874 (1153)
T PLN03210 811 NCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE------------EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc------------cChHHHhcCCCCCEE
Confidence 553333444433 4555555555555332222221 234555555555544 445555555555555
Q ss_pred eccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 522 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 551 (689)
++++|+-...+|..+..+++|+.+++++|.
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 555533222344444555555555555553
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.4e-20 Score=220.17 Aligned_cols=287 Identities=20% Similarity=0.213 Sum_probs=181.4
Q ss_pred CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341 (689)
Q Consensus 262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 341 (689)
.+|+.|++.++.+. .++.. ...+++|+.++++++......| .+..+++|++|++++|.....+|..+.. +++|+.|
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~-L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQY-LNKLEDL 686 (1153)
T ss_pred cCCcEEECcCcccc-ccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhc-cCCCCEE
Confidence 34444444444443 22222 1344555555555443222222 2444555666666555433345544332 5566666
Q ss_pred EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421 (689)
Q Consensus 342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 421 (689)
++++|...+.+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+...+. .+ .+++|+.|.+.++..
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~-~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPS-NL-RLENLDELILCEMKS 759 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccc-cc-cccccccccccccch
Confidence 666554333444433 4566666666666544344421 3456666666666554322 11 456666666655332
Q ss_pred -------cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699 422 -------IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 494 (689)
Q Consensus 422 -------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 494 (689)
....+..+..+++|+.|++++|.....+|.+++++++|+.|++++|...+.+|... .+++|+.|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 11122233446799999999998877899999999999999999986544666665 7899999999998643
Q ss_pred cccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699 495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 574 (689)
Q Consensus 495 ~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 574 (689)
. .+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 839 ~-----------~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 839 R-----------TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred c-----------ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 1 33332 368999999999998 67888999999999999996544467777888999999999998
Q ss_pred c
Q 040699 575 N 575 (689)
Q Consensus 575 ~ 575 (689)
.
T Consensus 904 ~ 904 (1153)
T PLN03210 904 G 904 (1153)
T ss_pred c
Confidence 5
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.8e-20 Score=201.42 Aligned_cols=265 Identities=23% Similarity=0.292 Sum_probs=206.2
Q ss_pred CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341 (689)
Q Consensus 262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 341 (689)
..-..|+++.+.++ .+|..+. ++++.|++.+|.++.+.. ..++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 44668899999888 6776542 478999999999887432 3578999999999998 67742 4689999
Q ss_pred EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421 (689)
Q Consensus 342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 421 (689)
++.+|.+.. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|.+.++.. ...+|+.|++++|.+
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCccccCCC----CcccccccccccCcc
Confidence 999998874 4443 357889999999998 77752 5789999999999987543 235688999999998
Q ss_pred cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCC
Q 040699 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSC 501 (689)
Q Consensus 422 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~ 501 (689)
.+ +|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|++.. +|.. ..+|+.|++++|.++
T Consensus 335 ~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt------- 395 (788)
T PRK15387 335 TS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT------- 395 (788)
T ss_pred cc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-------
Confidence 75 3431 2489999999999984 5542 3678899999999985 4543 357899999998876
Q ss_pred CcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
.+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..|
T Consensus 396 -----~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 396 -----SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -----CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 34543 3579999999999985 5543 357889999999998 678889999999999999999998777
Q ss_pred Ccc
Q 040699 582 EWE 584 (689)
Q Consensus 582 ~~~ 584 (689)
..+
T Consensus 463 ~~L 465 (788)
T PRK15387 463 QAL 465 (788)
T ss_pred HHH
Confidence 644
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=6.3e-19 Score=191.03 Aligned_cols=264 Identities=24% Similarity=0.294 Sum_probs=202.1
Q ss_pred ceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEcc
Q 040699 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDIS 319 (689)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (689)
..|++ +.+++. .+|..+. ++++.|++.+|.+. .+|. ..++|++|++++|.++.+.. ..++|+.|+++
T Consensus 204 ~~LdL-s~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls 270 (788)
T PRK15387 204 AVLNV-GESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 270 (788)
T ss_pred cEEEc-CCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence 34444 333333 4555544 47899999999988 4664 35899999999999987532 24689999999
Q ss_pred CCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc
Q 040699 320 NNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG 399 (689)
Q Consensus 320 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 399 (689)
+|.+. .+|.. +++|+.|++++|.++. +|. ..++|+.|++++|++. .+|.. ..+|+.|++++|.+.+
T Consensus 271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence 99987 56642 3579999999999884 444 3478999999999998 66642 3478899999999986
Q ss_pred cCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccC
Q 040699 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479 (689)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 479 (689)
++. -.++|+.|++++|+++.. |.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|++++ +|..
T Consensus 337 LP~----lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 337 LPT----LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred ccc----cccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---
Confidence 442 135899999999998853 432 357899999999998 45643 3579999999999985 4433
Q ss_pred CCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchh
Q 040699 480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 559 (689)
Q Consensus 480 l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 559 (689)
.++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..
T Consensus 401 ~s~L~~LdLS~N~Ls------------sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 401 PSELKELMVSGNRLT------------SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred ccCCCEEEccCCcCC------------CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 367999999999887 45543 346889999999998 67888999999999999999999888777
Q ss_pred ccC
Q 040699 560 LVE 562 (689)
Q Consensus 560 ~~~ 562 (689)
+..
T Consensus 465 L~~ 467 (788)
T PRK15387 465 LRE 467 (788)
T ss_pred HHH
Confidence 643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=5.9e-18 Score=184.88 Aligned_cols=225 Identities=27% Similarity=0.410 Sum_probs=118.4
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 391 (689)
.++.|++++|+++ .+|..++ ++|+.|++++|.+++ +|..+. .+|+.|++++|.+. .+|..+. .+|+.|+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD 268 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence 4555555555555 4454432 355556665555552 333332 24566666666655 5554432 3556666
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG 471 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 471 (689)
+++|++..+ +..+ .++|+.|++++|+++.. |..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.++.
T Consensus 269 Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKISCL-PENL--PEELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccCcc-cccc--CCCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc
Confidence 666655543 2222 13566666666665532 22221 356666666666652 33322 2466666666666663
Q ss_pred CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699 472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 551 (689)
+|..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ..|+.|++++|+
T Consensus 340 -LP~~l--~~sL~~L~Ls~N~L~------------~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 340 -LPASL--PPELQVLDVSKNQIT------------VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNN 399 (754)
T ss_pred -CChhh--cCcccEEECCCCCCC------------cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCC
Confidence 34333 256666666666654 3444332 466666666666663 343332 356666677766
Q ss_pred CCCCCchhc----cCCCCCCEEeccCCcCc
Q 040699 552 LNGKIPHQL----VELKTLEVFSVAYNNLS 577 (689)
Q Consensus 552 l~~~~~~~~----~~l~~L~~L~l~~N~l~ 577 (689)
+. .+|..+ ...+.+..+++.+|+++
T Consensus 400 L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 400 LV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 66 333332 23356666777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=6.6e-18 Score=184.52 Aligned_cols=247 Identities=24% Similarity=0.361 Sum_probs=190.4
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 391 (689)
+...|++++++++ .+|..+. +.++.|++++|.++. +|..+. ++|+.|++++|+++ .+|.... ++|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 4567888888887 6776553 579999999999984 555443 58999999999998 8887654 4799999
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG 471 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 471 (689)
+++|.+..++ ..+ .++|+.|++++|++.. +|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|.++.
T Consensus 248 Ls~N~L~~LP-~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRITELP-ERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccCcCC-hhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 9999998653 333 3589999999999874 565443 589999999999984 555443 579999999999985
Q ss_pred CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699 472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 551 (689)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~ 378 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALT------------SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNA 378 (754)
T ss_pred -CCccc--cccceeccccCCccc------------cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCc
Confidence 44433 368999999999887 4565553 68999999999998 4666553 789999999999
Q ss_pred CCCCCchhccCCCCCCEEeccCCcCcCCCCCcccc----ccccCcccccCCcCCC
Q 040699 552 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQ----FATFNENSYEGNTFLC 602 (689)
Q Consensus 552 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----~~~~~~~~~~~n~~~c 602 (689)
++. +|..+. .+|+.|++++|++. .+|+.+.. ...+..+.+.+||+..
T Consensus 379 Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 379 LTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 995 555544 47999999999998 55554333 3456678899999754
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1e-18 Score=178.24 Aligned_cols=153 Identities=25% Similarity=0.251 Sum_probs=66.4
Q ss_pred EEeeCCCCCC-CCCCCCCCCCCcCEEEccCCcCccc----CChhhhhcCCCceEEEccCCcCCc------cccccccCCC
Q 040699 292 LSLVNDSLAG-PFRLPIHSHKRLGMLDISNNNFRGH----IPLEIGDILPSLHVFNISMNALDG------SIPSSFGNMN 360 (689)
Q Consensus 292 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~ 360 (689)
|+|..+.+.+ .....+..+..|+.++++++.+++. ++.. ....++++.++++++.+.+ ..+..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4454554442 1222334445566666666665421 1111 1223456666666655441 1223444555
Q ss_pred CCcEEeccCCcccccchhhhhcCCCC---CCEEEccCCcCCccCc----ccccCC-CCccEEeccCCccccc----cccc
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGCVN---LESLVLSNNSLKGHMF----SRNFNL-ANLMSLQLEGNHFIGE----ISQS 428 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~~~~~----~~~~ 428 (689)
+|+.|++++|.+.+..+..+. .+.+ |++|++++|++.+... ..+..+ ++|+.|++++|.+++. .+..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 666666666555432222221 1222 5555555555442111 112233 4445555555544311 1223
Q ss_pred ccCCCCCCEEECCCCCCC
Q 040699 429 LSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 429 ~~~l~~L~~L~L~~n~i~ 446 (689)
+..+++|++|++++|.+.
T Consensus 161 ~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 161 LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHhCCCcCEEECcCCCCc
Confidence 334444444444444444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.2e-18 Score=175.71 Aligned_cols=179 Identities=25% Similarity=0.167 Sum_probs=81.3
Q ss_pred EEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCC----CCCCCCCCCCcCEEEccCCcCcc------cCChhhhhcCC
Q 040699 267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGP----FRLPIHSHKRLGMLDISNNNFRG------HIPLEIGDILP 336 (689)
Q Consensus 267 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~ 336 (689)
|++..+.+.+.--...+..+..+++++++++.++.. .+..+...+++++++++++.+.+ .++.. +..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~-l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG-LTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH-HHhcC
Confidence 444444444333333344555566666666555331 12223344555666665555431 01111 12244
Q ss_pred CceEEEccCCcCCccccccccCCCC---CcEEeccCCcccccchhh---hhcCC-CCCCEEEccCCcCCccC----cccc
Q 040699 337 SLHVFNISMNALDGSIPSSFGNMNF---LRILDLSNNQLTGEIPEH---LAVGC-VNLESLVLSNNSLKGHM----FSRN 405 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~---~~~~l-~~L~~L~l~~n~l~~~~----~~~~ 405 (689)
+|+.|++++|.+.+..+..+..+.. |+.|++++|++.+..... ....+ ++|+.|++++|.+++.. ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 5666666666554433333333333 666666666554211111 11123 55566666666555211 1223
Q ss_pred cCCCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCC
Q 040699 406 FNLANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 406 ~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 3445566666666655421 1222333445555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.7e-19 Score=149.58 Aligned_cols=182 Identities=25% Similarity=0.428 Sum_probs=155.3
Q ss_pred ccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCc
Q 040699 405 NFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 484 (689)
Q Consensus 405 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 484 (689)
+..+.+.+.|.+++|+++. .|..+..+.+|+.|++++|+|. .+|..+..++.|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 3457778889999999874 4556889999999999999998 78999999999999999999998 8899999999999
Q ss_pred EEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCC
Q 040699 485 ILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 564 (689)
Q Consensus 485 ~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 564 (689)
.||+++|++.. ...|..|..++.|+.|.|+.|.+. .+|...+.+++|+.|.+..|.+. .+|..++.++
T Consensus 106 vldltynnl~e----------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt 173 (264)
T KOG0617|consen 106 VLDLTYNNLNE----------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT 173 (264)
T ss_pred hhhcccccccc----------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence 99999998874 267888889999999999999998 77888899999999999999998 6788999999
Q ss_pred CCCEEeccCCcCcCCCCCcccccc---ccCcccccCCcCCC
Q 040699 565 TLEVFSVAYNNLSGEIPEWEAQFA---TFNENSYEGNTFLC 602 (689)
Q Consensus 565 ~L~~L~l~~N~l~~~~~~~~~~~~---~~~~~~~~~n~~~c 602 (689)
.|+.|++.+|.++...|+ ++.+. .-+...++.|||.-
T Consensus 174 ~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 999999999999866665 33332 22456677888765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=6.5e-18 Score=142.14 Aligned_cols=161 Identities=32% Similarity=0.473 Sum_probs=101.6
Q ss_pred CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699 359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438 (689)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 438 (689)
+.+++.|.++.|+++ .+|..+.. +.+|+.|++.+|++.+ .+..+..++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 444555555566555 55555544 5555555555555543 3334455666666666655543 566777777777777
Q ss_pred ECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccc
Q 040699 439 FLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR 517 (689)
Q Consensus 439 ~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~ 517 (689)
|+.+|.+. ..+|+.|..++.|+.|++++|.+. .+|....++++|+.|.+.+|.+. ..|..++.++.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll------------~lpkeig~lt~ 174 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL------------SLPKEIGDLTR 174 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh------------hCcHHHHHHHH
Confidence 77777665 356666777777777777777776 66666777777777777777665 56666777777
Q ss_pred cceEeccCcccccCCccccc
Q 040699 518 IQTLNLSHNDLTGSIPSTFS 537 (689)
Q Consensus 518 L~~L~L~~n~l~~~~~~~~~ 537 (689)
|++|++.+|+++ .+|+.++
T Consensus 175 lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHhcccceee-ecChhhh
Confidence 777777777766 4444333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=3.6e-13 Score=147.24 Aligned_cols=113 Identities=35% Similarity=0.576 Sum_probs=94.7
Q ss_pred ccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCc
Q 040699 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577 (689)
Q Consensus 498 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 577 (689)
+|++|.+.|.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|++++|+++
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 34444455688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccc-cccCcccccCCcCCCCCCC-CCCC
Q 040699 578 GEIPEWEAQF-ATFNENSYEGNTFLCGLPL-PICR 610 (689)
Q Consensus 578 ~~~~~~~~~~-~~~~~~~~~~n~~~c~~~~-~~c~ 610 (689)
+.+|..+... .......+.+|+..|+.|. ..|.
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred ccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999866542 3455678899999998764 3563
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.5e-12 Score=126.46 Aligned_cols=215 Identities=24% Similarity=0.239 Sum_probs=150.5
Q ss_pred CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcc-hhHHhhcCCCCcEEECCCCcCCcccCCCCCCCC
Q 040699 2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISL-LQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHF 80 (689)
Q Consensus 2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 80 (689)
+++.+|+++.|.++++.... ..+....|++++.|||+.|-+..-. +-.+..-+|+|+.|+++.|.+........-.-+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~-~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAG-IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccc-hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35778899999888776521 1146788999999999998776521 124555589999999999987643332233357
Q ss_pred CCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCC-CccccC
Q 040699 81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL-PWCLAN 158 (689)
Q Consensus 81 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~ 158 (689)
++|+.|.++.|.++ -.-...+...+|+|+.|.|..| .+. +......-+..|++|+|++|.+-+.. -...+.
T Consensus 197 ~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~-----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIIL-----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccc-----eecchhhhhhHHhhccccCCccccccccccccc
Confidence 88999999999884 2223344444899999999887 222 22224556778999999999876321 245678
Q ss_pred CCCCcEEEccceeeeeecCcccc------cCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccc
Q 040699 159 MTSLRILYVSYNQLTGSISSSPL------VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225 (689)
Q Consensus 159 l~~L~~L~L~~n~l~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 225 (689)
++.|+.|+++.+.+. .+..-.. ...++|++|++..|++..--+...+..+++|+.|....|.+..+
T Consensus 270 l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 889999999999887 4332122 45778999999999887544555666778888888878777654
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=3.8e-11 Score=131.47 Aligned_cols=114 Identities=32% Similarity=0.529 Sum_probs=101.8
Q ss_pred CCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccccc
Q 040699 458 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS 537 (689)
Q Consensus 458 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 537 (689)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. |.+|..+..+++|+.|+|++|++++.+|+.++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-----------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-----------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-----------CcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 4788999999999999999999999999999988776 47898999999999999999999999999999
Q ss_pred CCCCCCEEeCcCCcCCCCCchhccCC-CCCCEEeccCCcCcCCCCC
Q 040699 538 NLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 538 ~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~ 582 (689)
.+++|++|+|++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999999999999988764 5678899999988876654
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.5e-12 Score=126.44 Aligned_cols=191 Identities=21% Similarity=0.215 Sum_probs=142.6
Q ss_pred CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCC
Q 040699 2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFK 81 (689)
Q Consensus 2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 81 (689)
..|++++.||||+|-+..++.+.+....+++|+.|+|+.|.+....-......+++|+.|.|+.|.++..........++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 36899999999999999988899989999999999999998775422223334789999999999987432222455689
Q ss_pred CCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCC-Ccc----
Q 040699 82 SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL-PWC---- 155 (689)
Q Consensus 82 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~---- 155 (689)
+|+.|+|.+|........+..+ +..|+.|+|++| .++. -.....+.++.|+.|+++.|.++.+. |+.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~----~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDF----DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred cHHHhhhhcccccceecchhhh---hhHHhhccccCCccccc----ccccccccccchhhhhccccCcchhcCCCccchh
Confidence 9999999999421122333333 558999999998 4333 11125789999999999999998643 333
Q ss_pred -ccCCCCCcEEEccceeeeeecCc-ccccCCCCCCEEeccCCcceee
Q 040699 156 -LANMTSLRILYVSYNQLTGSISS-SPLVHLTSIEKLYLSNNHFRIP 200 (689)
Q Consensus 156 -~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 200 (689)
...+++|+.|++..|++. ..+. ..+..+++|+.|.+..|+++.+
T Consensus 296 kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 357899999999999997 3332 2355677888999888888743
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.1e-11 Score=114.43 Aligned_cols=134 Identities=25% Similarity=0.327 Sum_probs=95.9
Q ss_pred cCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCc
Q 040699 430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP 509 (689)
Q Consensus 430 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~ 509 (689)
...+-|+++||++|.|+ .+..+..-.+.++.|++++|++.... .+..+++|+.||+++|.++ .+-
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls------------~~~ 345 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA------------ECV 345 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH------------hhh
Confidence 34456788888888877 55566667788888888888887432 3677888888888888776 233
Q ss_pred hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCC-chhccCCCCCCEEeccCCcCcCCC
Q 040699 510 PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVFSVAYNNLSGEI 580 (689)
Q Consensus 510 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~ 580 (689)
.+-..+.+.++|.|++|.+... ..++.+-+|..||+++|+|.... -..+++++-|+.+.+.+||+.+.+
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 3334566788888888887532 45677788888888888887532 235677888888888888887543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.5e-12 Score=130.41 Aligned_cols=195 Identities=30% Similarity=0.413 Sum_probs=148.1
Q ss_pred EEeccCCcccccchhhhhc-CCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCC
Q 040699 364 ILDLSNNQLTGEIPEHLAV-GCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN 442 (689)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 442 (689)
.|.|++-++. .+|...+. ++.--...+++.|++.. .+..+..+-.|+.+.++.|.+. .+|..+..+..|..|+++.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3455555555 55544443 23344566788888765 3444556677888888888765 5677788888888888888
Q ss_pred CCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEe
Q 040699 443 NNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522 (689)
Q Consensus 443 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~ 522 (689)
|++. .+|..+..+ -|+.|.+++|+++ ..|..+.....|..||.+.|.+. .+|..++++.+|+.|+
T Consensus 131 NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------------slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------------SLPSQLGYLTSLRDLN 195 (722)
T ss_pred chhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh------------hchHHhhhHHHHHHHH
Confidence 8887 566555544 4788888888887 66777777788888888888876 7889999999999999
Q ss_pred ccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699 523 LSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579 (689)
Q Consensus 523 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 579 (689)
+..|++... |..+. .-.|..||+|.|+++ .+|-.|..+..|++|.|.+||+..+
T Consensus 196 vrRn~l~~l-p~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 196 VRRNHLEDL-PEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HhhhhhhhC-CHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 999999855 44444 456899999999999 7899999999999999999999843
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=1.2e-11 Score=117.19 Aligned_cols=140 Identities=17% Similarity=0.244 Sum_probs=84.7
Q ss_pred cCCCCCCEEECCCCCCCCc----CChhhcCCCCCcEEEcCCCcccc----CCcccccCCCCCcEEeccccccccccccCC
Q 040699 430 SKCSSLEGLFLNNNNLSGK----IPRWLGDLTRLQYIIMPNNHLEG----PIPVEFCQLDLLQILDISDNNISGRLDLSC 501 (689)
Q Consensus 430 ~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~ 501 (689)
..-+.|++++...|++... +...|...+.|+.+.+..|.+.. .....|.+++.|+.|||++|.++..-
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg---- 229 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG---- 229 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----
Confidence 3445677777777766522 22345666677777777776642 22344667777777777777665210
Q ss_pred CcccCCCchhhccccccceEeccCcccccCCcccc-----cCCCCCCEEeCcCCcCCCC----CchhccCCCCCCEEecc
Q 040699 502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF-----SNLKHVESLDLSNNKLNGK----IPHQLVELKTLEVFSVA 572 (689)
Q Consensus 502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~ 572 (689)
...+...+..+++|+.|++++|.+...-...| ...+.|+.|.+.+|.|+.. +...+...+.|..|+++
T Consensus 230 ---s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 230 ---SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred ---HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 00223456667777888888777764332222 2357788888888887643 22233445778888888
Q ss_pred CCcC
Q 040699 573 YNNL 576 (689)
Q Consensus 573 ~N~l 576 (689)
+|.+
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 8877
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=8.5e-11 Score=104.74 Aligned_cols=130 Identities=24% Similarity=0.374 Sum_probs=45.2
Q ss_pred hhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhh
Q 040699 26 ELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGE 105 (689)
Q Consensus 26 ~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 105 (689)
.+.+..++++|+|++|.|+. +..+...+.+|++|++++|.++.. . .+..+++|++|++++|.+ ..+...+..
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l-~--~l~~L~~L~~L~L~~N~I---~~i~~~l~~ 85 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL-E--GLPGLPRLKTLDLSNNRI---SSISEGLDK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS------S-CHHHHH
T ss_pred cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc-c--CccChhhhhhcccCCCCC---CccccchHH
Confidence 35566678999999999886 445554478899999999998854 2 577889999999999998 344444443
Q ss_pred cCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCc----cccCCCCCcEEEc
Q 040699 106 SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW----CLANMTSLRILYV 167 (689)
Q Consensus 106 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L 167 (689)
.+++|+.|++++|.+.. ..++ ..+..+++|++|+|.+|+++.. +. .+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~-l~~l--~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISD-LNEL--EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---S-CCCC--GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCC-hHHh--HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 47888888888884432 1112 2466778888888888877632 21 2345555655553
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.1e-10 Score=122.32 Aligned_cols=155 Identities=32% Similarity=0.459 Sum_probs=73.4
Q ss_pred CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699 386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465 (689)
Q Consensus 386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 465 (689)
+|+.|++++|.+.... ..+..+++|+.|++++|++... +......++|+.|++++|++. .+|.....+..|+++.++
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhhh-hhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 3444444444433221 2233444455555555544322 222224455555555555555 334333333445555555
Q ss_pred CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEE
Q 040699 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545 (689)
Q Consensus 466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 545 (689)
+|.+. ..+..+..+.++..+.+.+|++. ..+..+..+++++.|++++|.++...+ ++.+.+++.|
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L 282 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE------------DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL 282 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee------------eccchhccccccceecccccccccccc--ccccCccCEE
Confidence 55322 23334445555555555555543 224445555556666666666553322 5555666666
Q ss_pred eCcCCcCCCCCch
Q 040699 546 DLSNNKLNGKIPH 558 (689)
Q Consensus 546 ~L~~N~l~~~~~~ 558 (689)
++++|.+....|.
T Consensus 283 ~~s~n~~~~~~~~ 295 (394)
T COG4886 283 DLSGNSLSNALPL 295 (394)
T ss_pred eccCccccccchh
Confidence 6666665544443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=4.4e-12 Score=127.16 Aligned_cols=196 Identities=27% Similarity=0.470 Sum_probs=162.8
Q ss_pred CCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCE
Q 040699 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG 437 (689)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 437 (689)
.+.--...|++.|++. ++|..+.. +..|+.+.+..|.+.. .+..+..+..|+.++|+.|++. ..|..+..| -|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcC-ccee
Confidence 3445567899999998 99988776 8889999999998875 4567788999999999999987 455555554 4899
Q ss_pred EECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccc
Q 040699 438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR 517 (689)
Q Consensus 438 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~ 517 (689)
|.+++|+++ .+|..++....|..|+.+.|.+. ..|..++++.+|+.|.+..|++. ..|+.+..+ .
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~------------~lp~El~~L-p 212 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE------------DLPEELCSL-P 212 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh------------hCCHHHhCC-c
Confidence 999999998 78888889999999999999998 67778899999999999999987 678888855 5
Q ss_pred cceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccC---CCCCCEEeccCCc
Q 040699 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE---LKTLEVFSVAYNN 575 (689)
Q Consensus 518 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l~~N~ 575 (689)
|..||++.|+++ .+|..|..++.|++|-|.+|.+. ..|..+.- ..-.++|+..-++
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 889999999999 78999999999999999999998 55655432 3445667776664
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2e-10 Score=120.56 Aligned_cols=199 Identities=33% Similarity=0.462 Sum_probs=154.4
Q ss_pred cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCC-CCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL-ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN 441 (689)
Q Consensus 363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 441 (689)
..++.+.+.+...+.. ... .+.++.+++.+|.+..+.+. .... ++|+.|++++|++.. ++..+..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~~~-~~~-~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNISE-LLE-LTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCchh-hhc-ccceeEEecCCcccccCccc-cccchhhcccccccccchhh-hhhhhhccccccccccC
Confidence 3566666666322222 222 46788888888888765443 2234 389999999999864 44568899999999999
Q ss_pred CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceE
Q 040699 442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL 521 (689)
Q Consensus 442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L 521 (689)
+|++. .++......+.|+.|++++|++. .+|.....+..|+++.+++|.+. ..+..+..+.++..+
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l 237 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII------------ELLSSLSNLKNLSGL 237 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce------------ecchhhhhccccccc
Confidence 99998 55655557899999999999999 45555455677999999999644 567778889999999
Q ss_pred eccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 522 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
.+.+|++. ..+..++.++++++|++++|.++...+ +..+.+++.+++++|.++...|.
T Consensus 238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 99999987 346778899999999999999995544 88889999999999998866554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.4e-10 Score=101.87 Aligned_cols=107 Identities=28% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEE
Q 040699 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLF 439 (689)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 439 (689)
..+++|++.+|.|. .+. .....+.+|+.|++++|.+..+. .+..++.|++|++++|+++...+.....+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34555555555554 332 22222445555555555554422 234455555555555555433222122455555555
Q ss_pred CCCCCCCCcC-ChhhcCCCCCcEEEcCCCccc
Q 040699 440 LNNNNLSGKI-PRWLGDLTRLQYIIMPNNHLE 470 (689)
Q Consensus 440 L~~n~i~~~~-~~~l~~l~~L~~L~l~~n~l~ 470 (689)
+++|+|.... -..+..+++|+.|++.+|++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555554211 123444455555555555544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=3.2e-11 Score=114.22 Aligned_cols=221 Identities=18% Similarity=0.138 Sum_probs=153.2
Q ss_pred CCCCCCCEEeCCCCCCCC-ccccc-------hhhcCCCCCCEEECCCCCCCCcchh---HHhhcCCCCcEEECCCCcCCc
Q 040699 2 GSFPSLNTLYLLFNNFTD-IATTA-------QELHSFTNLEYLSLDFSSLHISLLQ---SIASIFPSLKNLSMSGCEVNG 70 (689)
Q Consensus 2 ~~l~~L~~L~Ls~n~i~~-~~~~~-------~~~~~~~~L~~L~L~~~~i~~~~~~---~~~~~l~~L~~L~Ls~n~l~~ 70 (689)
++.++|+..++|+---.- .+++| +.+..+++|++|+||.|.+....++ .+.+.+..|++|.|.+|.+..
T Consensus 55 ~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 55 ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 455678888887642110 01333 3466788999999999988776665 333447889999999987652
Q ss_pred cc------------CCCCCCCCCCCCeeeCCCCccccCCc-cchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCC
Q 040699 71 LV------------RGQGFPHFKSLEHLDMSSTRIALNTS-FLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH 137 (689)
Q Consensus 71 ~~------------~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~ 137 (689)
.- .....+.-+.||++....|++...+. .....++..+.|+.+.++.|.+......+....+..|++
T Consensus 135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~ 214 (382)
T KOG1909|consen 135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPH 214 (382)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCc
Confidence 11 11133455789999999998732221 123445668899999999995555444455568999999
Q ss_pred CCEEeCCCCcCcc----CCCccccCCCCCcEEEccceeeeeecCcccc-----cCCCCCCEEeccCCcceeec---Cccc
Q 040699 138 LQELYMADNDLRG----SLPWCLANMTSLRILYVSYNQLTGSISSSPL-----VHLTSIEKLYLSNNHFRIPI---SLEP 205 (689)
Q Consensus 138 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~---~~~~ 205 (689)
|+.|||.+|-++. .+...+..+++|+.|++++|.+...-.. +| ...+.|+.|.+.+|.++... ....
T Consensus 215 LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~-a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 215 LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI-AFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred ceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH-HHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 9999999998874 3455677889999999999988632111 22 23689999999999987321 1233
Q ss_pred ccCCCCcceeeccCCccc
Q 040699 206 LFNHSRLKIFYADNNELN 223 (689)
Q Consensus 206 ~~~l~~L~~L~l~~n~~~ 223 (689)
....+.|..|.+++|.+.
T Consensus 294 ~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcchhhHHhcCCccccc
Confidence 455899999999999984
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=8e-11 Score=108.84 Aligned_cols=204 Identities=22% Similarity=0.251 Sum_probs=140.2
Q ss_pred CCCCCEEeCCCCC--------CCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCccc---
Q 040699 4 FPSLNTLYLLFNN--------FTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLV--- 72 (689)
Q Consensus 4 l~~L~~L~Ls~n~--------i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--- 72 (689)
+..|.+|-+++.. +.. .++-.+.-+++|..+.++.|.-.. +..+...-|.|+++.+.+..+....
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~--~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPN--RLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred hhheeEEEecCCCCCCcccccccc--ccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccccccc
Confidence 4567777777542 222 344556677889999988875332 2222222477888887765433110
Q ss_pred CC-------------------CCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccC
Q 040699 73 RG-------------------QGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLC 133 (689)
Q Consensus 73 ~~-------------------~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~ 133 (689)
|. .....++.|+.+|||+|.| ..+.+++-- .|.++.|++|+|.+.. + +.+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I---~~iDESvKL-~Pkir~L~lS~N~i~~----v--~nLa 326 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI---TQIDESVKL-APKLRRLILSQNRIRT----V--QNLA 326 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccch---hhhhhhhhh-ccceeEEeccccceee----e--hhhh
Confidence 00 0122457899999999988 555555555 7899999999984332 2 3577
Q ss_pred CCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcc
Q 040699 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLK 213 (689)
Q Consensus 134 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 213 (689)
.+++|++|||++|.++ ....+-.++-++++|.++.|.+. .+. .+.++-+|..||+++|++..-.....+.+++-|+
T Consensus 327 ~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 8899999999999887 34444556778899999999886 444 3777888999999999987444445678889999
Q ss_pred eeeccCCccccc
Q 040699 214 IFYADNNELNAE 225 (689)
Q Consensus 214 ~L~l~~n~~~~~ 225 (689)
.+.+.+|++.+.
T Consensus 403 ~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 403 TLRLTGNPLAGS 414 (490)
T ss_pred HHhhcCCCcccc
Confidence 999999988653
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-10 Score=122.54 Aligned_cols=245 Identities=25% Similarity=0.263 Sum_probs=146.2
Q ss_pred CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699 310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389 (689)
Q Consensus 310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 389 (689)
+..++.+.+..|.+. .+.... ..+.+++.+++.+|.+..+. ..+..+++|++|++++|.|+ .+..-.. ++.|+.
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~~--l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLST--LTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhh-hhhccc-ccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchhh--ccchhh
Confidence 344455555555554 211111 22556777777777666432 22556777777777777776 4433222 455777
Q ss_pred EEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH 468 (689)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 468 (689)
|++++|.+..+ ..+..+++|+.+++++|.+....+ . ...+.+++.+++++|.+.. ...+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 77777777653 334447777777787777765543 2 4667778888888887762 2233334455555777777
Q ss_pred cccCCcccccCCCC--CcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699 469 LEGPIPVEFCQLDL--LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD 546 (689)
Q Consensus 469 l~~~~~~~~~~l~~--L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 546 (689)
++..-+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|++... ..+.....+..+.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~------------~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~ 283 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS------------RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELW 283 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc------------cccccccccccccccchhhcccccc--ccccccchHHHhc
Confidence 663322 122222 677777777765 3335566777788888888877643 3345567777777
Q ss_pred CcCCcCCCC---Cchh-ccCCCCCCEEeccCCcCcCCCC
Q 040699 547 LSNNKLNGK---IPHQ-LVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 547 L~~N~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
+..|.+... .... ....+.+..+.+.+|+.....+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 777776622 1111 3445777788888887766544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.5e-09 Score=79.36 Aligned_cols=59 Identities=41% Similarity=0.631 Sum_probs=36.1
Q ss_pred ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCc
Q 040699 517 RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575 (689)
Q Consensus 517 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 575 (689)
+|++|++++|+++.+.+..|.++++|++|++++|+++...|+.|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665555566666666666666666665555566666666666666664
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=5.6e-10 Score=117.09 Aligned_cols=217 Identities=29% Similarity=0.346 Sum_probs=146.8
Q ss_pred CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEE
Q 040699 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL 414 (689)
Q Consensus 335 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 414 (689)
+..++.+.+..|.+.. .-..+..+.+|+.+++.+|.+. .+.... ..+++|++|++++|.|+.+. .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhh
Confidence 5577777788888764 2344677888999999999887 554422 23788888888888887643 34456678888
Q ss_pred eccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccc
Q 040699 415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493 (689)
Q Consensus 415 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 493 (689)
++.+|.+... ..+..+++|+.+++++|.+....+ . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 8888887644 345567888888888888874444 2 456778888888888776432 233344455557777766
Q ss_pred ccccccCCCcccCCCchhhcccc--ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699 494 SGRLDLSCNKLIGPIPPKIGNLT--RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571 (689)
Q Consensus 494 ~~~l~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 571 (689)
+. + ..+..+. .|+.+++++|++. ..+..+..+..+..|++.+|++... ..+.....+..+..
T Consensus 221 ~~--------~-----~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 221 SK--------L-----EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWL 284 (414)
T ss_pred ee--------c-----cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhcc
Confidence 52 1 1122223 3888999999887 3446677788889999999988754 23444556666666
Q ss_pred cCCcCc
Q 040699 572 AYNNLS 577 (689)
Q Consensus 572 ~~N~l~ 577 (689)
..|++.
T Consensus 285 ~~~~~~ 290 (414)
T KOG0531|consen 285 NDNKLA 290 (414)
T ss_pred Ccchhc
Confidence 677654
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=9.6e-10 Score=101.80 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCCCEEeCCCCcCcc-CCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcce
Q 040699 135 LMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR 198 (689)
Q Consensus 135 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 198 (689)
+|++..+-+..|.+.. ...+.+..++.+..|+|+.|+|..--...++.++++|..|.++++++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 3445555555554432 123345555566666666666653333334556666666666666654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.1e-09 Score=76.49 Aligned_cols=57 Identities=37% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699 435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491 (689)
Q Consensus 435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 491 (689)
|++|++++|++....+.+|.++++|++|++++|.++...+.+|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 444444444444333334444444444444444444444444444444444444444
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=3e-10 Score=117.34 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699 435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 494 (689)
Q Consensus 435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 494 (689)
|...+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 334444444444 3333444444455555555544422 13444444555555444443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=1.2e-09 Score=112.96 Aligned_cols=129 Identities=26% Similarity=0.347 Sum_probs=98.7
Q ss_pred CCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccC
Q 040699 80 FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLAN 158 (689)
Q Consensus 80 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 158 (689)
...|.+.+.++|.+ ......+-- ++.|+.|+|++| +... ..+..|++|++|||++|.+....--....
T Consensus 163 Wn~L~~a~fsyN~L---~~mD~SLql-l~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 163 WNKLATASFSYNRL---VLMDESLQL-LPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLRHVPQLSMVG 231 (1096)
T ss_pred hhhHhhhhcchhhH---HhHHHHHHH-HHHhhhhccchhhhhhh-------HHHHhcccccccccccchhccccccchhh
Confidence 35677778888876 333334433 788999999999 4443 36888999999999999998432223334
Q ss_pred CCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccc
Q 040699 159 MTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN 223 (689)
Q Consensus 159 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 223 (689)
| +|+.|.+++|.++ .+. .+.++++|+.||+++|-+.+.-...+++.+..|+.|+|.+|++-
T Consensus 232 c-~L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-hheeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4 4999999999988 554 37889999999999998887666777888899999999999874
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1e-09 Score=101.62 Aligned_cols=182 Identities=21% Similarity=0.173 Sum_probs=76.9
Q ss_pred CCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCc-cccCCccchhhhhcCCCcc
Q 040699 33 LEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR-IALNTSFLQIIGESMPSLK 111 (689)
Q Consensus 33 L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~L~ 111 (689)
|++|||+...|+...+..+-..|.+|+.|++.++++.+.+.. .+++-.+|+.|+++.+. + +......+..+|..|.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~--t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGF--TENALQLLLSSCSRLD 263 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccccc--chhHHHHHHHhhhhHh
Confidence 555555555555444443333355555555555555443332 34444555555555443 2 1222233344455555
Q ss_pred EEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCc--c-CCCccccCCCCCcEEEccceeeeeecCcccccCCCCCC
Q 040699 112 YLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLR--G-SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE 188 (689)
Q Consensus 112 ~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~--~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 188 (689)
.|+|+.|.............+ -++|+.|+|++++=. . .+..-...+++|.+|||++|..-..-....|.+++.|+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 555555521111111100011 124555555544311 0 11111234555666666554321111111344555566
Q ss_pred EEeccCCcceeecCcccccCCCCcceeeccC
Q 040699 189 KLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219 (689)
Q Consensus 189 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 219 (689)
+|.++.|....+...-.+...+.|.+|+..+
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 6666555533222223344455555555444
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=3.9e-08 Score=110.25 Aligned_cols=149 Identities=22% Similarity=0.283 Sum_probs=89.5
Q ss_pred CCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCc--cccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCcccc
Q 040699 56 PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR--IALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGL 132 (689)
Q Consensus 56 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l 132 (689)
...+...+-+|.+... + .-..+++|++|-+..|. + ..++...+..++.|++|||++| ..+. +|. .+
T Consensus 523 ~~~rr~s~~~~~~~~~-~--~~~~~~~L~tLll~~n~~~l---~~is~~ff~~m~~LrVLDLs~~~~l~~----LP~-~I 591 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-A--GSSENPKLRTLLLQRNSDWL---LEISGEFFRSLPLLRVLDLSGNSSLSK----LPS-SI 591 (889)
T ss_pred hheeEEEEeccchhhc-c--CCCCCCccceEEEeecchhh---hhcCHHHHhhCcceEEEECCCCCccCc----CCh-HH
Confidence 3456666666655422 1 12334567777777664 3 4444555555777888888776 3344 665 77
Q ss_pred CCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcce-eecCcccccCCCC
Q 040699 133 CSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSR 211 (689)
Q Consensus 133 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~ 211 (689)
+.+-+||+|+|+++.+. .+|.+++++.+|.+|++..+.....+ .+....+++|++|.+...... +......+.++.+
T Consensus 592 ~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 77888888888888777 67778888888888888776654333 324555777887777654421 1112233444555
Q ss_pred cceeec
Q 040699 212 LKIFYA 217 (689)
Q Consensus 212 L~~L~l 217 (689)
|+.+..
T Consensus 670 L~~ls~ 675 (889)
T KOG4658|consen 670 LENLSI 675 (889)
T ss_pred hhhhee
Confidence 554444
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=1.1e-07 Score=106.86 Aligned_cols=200 Identities=25% Similarity=0.275 Sum_probs=129.9
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCc--CcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcE
Q 040699 287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN--FRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRI 364 (689)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 364 (689)
...+.+.+.++.+..+.. -..++.|++|-+.+|. +. .++..+|..+|.|+.||+++|.-.+.+|..++++-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 456677776666654322 1234578888888886 44 788888888999999999988766788999999999999
Q ss_pred EeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc--cccccccccCCCCCCEEECCC
Q 040699 365 LDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF--IGEISQSLSKCSSLEGLFLNN 442 (689)
Q Consensus 365 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~l~~L~~L~L~~ 442 (689)
|++++..+. .+|..+.. +.+|.+|++..+.-....+.....+++|++|.+..... ....-..+..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999998 88888876 88899999988765544555566688899888876541 111222334455555555433
Q ss_pred CCCCCcCChhhcCCCCCc----EEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699 443 NNLSGKIPRWLGDLTRLQ----YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 494 (689)
Q Consensus 443 n~i~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 494 (689)
... .+..-+..+.+|. .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 322 0111122223332 2332333322 33445666778888888888765
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.5e-09 Score=100.67 Aligned_cols=184 Identities=20% Similarity=0.135 Sum_probs=128.9
Q ss_pred CCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCc-CCcccCCCCCCCCCCCC
Q 040699 6 SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCE-VNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 6 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~ 84 (689)
.|++||||...|+. ..+-..++.|.+|+.|.|.++.+.+.....+++ -.+|+.|+++.+. ++.....-.++.|+.|.
T Consensus 186 Rlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence 47899999888875 234456788999999999999998875567777 6899999999874 22111111467899999
Q ss_pred eeeCCCCccccCCccchh-hhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcC-ccCCCccccCCCCC
Q 040699 85 HLDMSSTRIALNTSFLQI-IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDL-RGSLPWCLANMTSL 162 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 162 (689)
.|++++|.. ..+.-.. +..--++|+.|+|+++........+.. -...||+|.+|||++|.. +......|-+++.|
T Consensus 264 ~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 999999986 3332222 222235899999999822111112322 456899999999998853 33333456789999
Q ss_pred cEEEccceeeeeecCc--ccccCCCCCCEEeccCCc
Q 040699 163 RILYVSYNQLTGSISS--SPLVHLTSIEKLYLSNNH 196 (689)
Q Consensus 163 ~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~ 196 (689)
++|.++.|... +|. -.+...+.|.+|++.++-
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 99999999732 222 135667899999998874
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=7.2e-09 Score=100.81 Aligned_cols=84 Identities=30% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCEEECCCCC-CCCcchhHHhhcCCCCcEEECCCCcCC-cccCCCCCCCCCCCCeeeCCCCc-cccCCccchhhhhcCCC
Q 040699 33 LEYLSLDFSS-LHISLLQSIASIFPSLKNLSMSGCEVN-GLVRGQGFPHFKSLEHLDMSSTR-IALNTSFLQIIGESMPS 109 (689)
Q Consensus 33 L~~L~L~~~~-i~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~ 109 (689)
|+.|.+.++. .....+..+...+|++++|++.+|... +..-...-..+++|++|++..|. | +....+.+.+.+++
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i--T~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI--TDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh--HHHHHHHHHHhhhh
Confidence 5555555542 222223344444555555555555311 11000011234555555555532 2 22333334444555
Q ss_pred ccEEECCCC
Q 040699 110 LKYLSLSNS 118 (689)
Q Consensus 110 L~~L~Ls~~ 118 (689)
|++++++.|
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 555555555
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=1e-08 Score=99.68 Aligned_cols=265 Identities=18% Similarity=0.143 Sum_probs=116.7
Q ss_pred CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCC-CCCCcchhHHhhcCCCCcEEECCCCc-CCcccCCCCCCCCCCCC
Q 040699 7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFS-SLHISLLQSIASIFPSLKNLSMSGCE-VNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~ 84 (689)
|+.|.+++++-.....+...-.+|+++++|.+.+| ++++.....+.+.+++|++|++..|. ++......--..+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55566666554433334444455666666666655 34444444555556666666666532 22221111123455666
Q ss_pred eeeCCCCccccCCccchhhhhcCCCccEEECC--------------------------CC-CCCCCCCccCccccCCCCC
Q 040699 85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLS--------------------------NS-TRGTNSSRILDQGLCSLMH 137 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls--------------------------~~-~~~~~~~~~~~~~l~~l~~ 137 (689)
+|+++++.-. .+...+...+.+..++.+.+. +| .+.+.. +- ..-..+..
T Consensus 220 ~lNlSwc~qi-~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~--~~-~i~~~c~~ 295 (483)
T KOG4341|consen 220 YLNLSWCPQI-SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED--LW-LIACGCHA 295 (483)
T ss_pred HhhhccCchh-hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH--HH-HHhhhhhH
Confidence 6666665421 122222223333344444333 43 111100 00 01224455
Q ss_pred CCEEeCCCCcC-ccCCCccc-cCCCCCcEEEccceeeeeecCcccc-cCCCCCCEEeccCCcceeecCccc-ccCCCCcc
Q 040699 138 LQELYMADNDL-RGSLPWCL-ANMTSLRILYVSYNQLTGSISSSPL-VHLTSIEKLYLSNNHFRIPISLEP-LFNHSRLK 213 (689)
Q Consensus 138 L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~ 213 (689)
|+.|+.+++.- ++..-.++ .++++|++|-++.++.-+......+ .+++.|+.+++.++.......+.. -.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 55555554432 11111122 2455666666665542111111111 234556666666655432222222 23455566
Q ss_pred eeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEE
Q 040699 214 IFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLS 293 (689)
Q Consensus 214 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 293 (689)
.+.++.+........ ..+...-.....++.+.++++....+.--.....+++|+.++
T Consensus 376 ~lslshce~itD~gi-----------------------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 376 VLSLSHCELITDEGI-----------------------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred cCChhhhhhhhhhhh-----------------------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 665555443221100 001111123456777777777654333323345667777777
Q ss_pred eeCCC
Q 040699 294 LVNDS 298 (689)
Q Consensus 294 l~~~~ 298 (689)
+.+++
T Consensus 433 l~~~q 437 (483)
T KOG4341|consen 433 LIDCQ 437 (483)
T ss_pred eechh
Confidence 76653
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=4e-08 Score=80.54 Aligned_cols=133 Identities=21% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCEEECCCCCCCCcCChh---hcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699 435 LEGLFLNNNNLSGKIPRW---LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK 511 (689)
Q Consensus 435 L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~ 511 (689)
+..++|+.|++. .++.+ +.....|+..++++|.+....+..-...+..+.|++++|.++ .+|..
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis------------dvPeE 95 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS------------DVPEE 95 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh------------hchHH
Confidence 455667777665 23332 333455666677777776433333334456677777777666 56766
Q ss_pred hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.. +|..+..-......++.++++.+..+.
T Consensus 96 ~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence 777777777777777776 445555557777777777777663 333333223333445566666655554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=7.2e-07 Score=83.15 Aligned_cols=188 Identities=18% Similarity=0.134 Sum_probs=117.8
Q ss_pred cCCCCCCEEECCCCCCCCcchh---HHhhcCCCCcEEECCCCcCCcccCCCCC-CCCCCCCeeeCCCCccccCCccchhh
Q 040699 28 HSFTNLEYLSLDFSSLHISLLQ---SIASIFPSLKNLSMSGCEVNGLVRGQGF-PHFKSLEHLDMSSTRIALNTSFLQII 103 (689)
Q Consensus 28 ~~~~~L~~L~L~~~~i~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~ 103 (689)
..+++++.+||.+|.|++ +. ++...+|.|++|+++.|++...+. .+ ..+++|++|-|.+..++ -...+..
T Consensus 68 ~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~--w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLS--WTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCC--hhhhhhh
Confidence 457788889999888886 44 455558889999999888875543 34 36778888888887763 2222333
Q ss_pred hhcCCCccEEECCCC-CCCCC--CCccCccccCCCCCCCEEeCCCCcCccC--CCccccCCCCCcEEEccceeeeeecCc
Q 040699 104 GESMPSLKYLSLSNS-TRGTN--SSRILDQGLCSLMHLQELYMADNDLRGS--LPWCLANMTSLRILYVSYNQLTGSISS 178 (689)
Q Consensus 104 ~~~l~~L~~L~Ls~~-~~~~~--~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~ 178 (689)
...+|.++.|.+|.| ....+ ...+.+ .-+.+++|.+..|..... ...--.-++++..+.+..|.+...-..
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc
Confidence 344777788877776 11110 000110 112344444444433210 001112345677777777776533333
Q ss_pred ccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccc
Q 040699 179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225 (689)
Q Consensus 179 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 225 (689)
..+..++.+-.|+++.+.+....+...+.+++.|..|.+.++++...
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 35666777888999999887666677788999999999999887654
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=1.2e-06 Score=80.62 Aligned_cols=244 Identities=20% Similarity=0.181 Sum_probs=111.9
Q ss_pred ccCCCCCCEEEccCCcCcCCCChHHHhcCCC---CcEEEeeCCCCCCC-----------CCCCCCCCCCcCEEEccCCcC
Q 040699 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTK---LRQLSLVNDSLAGP-----------FRLPIHSHKRLGMLDISNNNF 323 (689)
Q Consensus 258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~---L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~~ 323 (689)
+..+..+..+++++|.+......++.....+ |+...++.- ++|- ...++-+||+|+.+++++|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3446777888888888776666655443333 333333321 1111 011244566666666666666
Q ss_pred cccCChhhh---hcCCCceEEEccCCcCCcccccc-------------ccCCCCCcEEeccCCcccccchhhhhcCCCCC
Q 040699 324 RGHIPLEIG---DILPSLHVFNISMNALDGSIPSS-------------FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNL 387 (689)
Q Consensus 324 ~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 387 (689)
....|.... ..-..|++|.+.+|.+....-.. ..+-|.|++++...|++. ..+.....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a----- 178 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSA----- 178 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHH-----
Confidence 544443222 22345666666666543211111 112234444444444443 22211110
Q ss_pred CEEEccCCcCCccCcccccCCCCccEEeccCCccccc-----ccccccCCCCCCEEECCCCCCCCc----CChhhcCCCC
Q 040699 388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE-----ISQSLSKCSSLEGLFLNNNNLSGK----IPRWLGDLTR 458 (689)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~ 458 (689)
..+..-.+|+++.+..|.|... .-..+..+++|++||+.+|.++.. +..++...+.
T Consensus 179 ---------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 179 ---------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred ---------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 1111123455555555544211 011223455666666666655521 1223334445
Q ss_pred CcEEEcCCCccccCCcccc----c--CCCCCcEEeccccccccc--cccCCCcccCCCchhhccccccceEeccCcccc
Q 040699 459 LQYIIMPNNHLEGPIPVEF----C--QLDLLQILDISDNNISGR--LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT 529 (689)
Q Consensus 459 L~~L~l~~n~l~~~~~~~~----~--~l~~L~~L~l~~n~~~~~--l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 529 (689)
|+.|.+.+|-++......+ . ..|+|..|-..+|...+. ++.+-|.+. -..++-|..|.+.+|.+.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e------~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE------QDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh------hcccHHHHHHHHccCcch
Confidence 6666666665543322221 1 235666666666655431 111111110 134566777777777776
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=1.1e-06 Score=80.87 Aligned_cols=217 Identities=18% Similarity=0.138 Sum_probs=124.9
Q ss_pred CCCCCEEeCCCCCCCC--ccccchhhcCCCCCCEEECCCCCCCC---cc-------hhHHhhcCCCCcEEECCCCcCCcc
Q 040699 4 FPSLNTLYLLFNNFTD--IATTAQELHSFTNLEYLSLDFSSLHI---SL-------LQSIASIFPSLKNLSMSGCEVNGL 71 (689)
Q Consensus 4 l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~~L~~L~L~~~~i~~---~~-------~~~~~~~l~~L~~L~Ls~n~l~~~ 71 (689)
+..++.+|||+|.|.. .+.++..+.+-++|+..+++.-.... .. .+++.+ ||+|+..+||.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcc
Confidence 4567889999998864 22355667777888888887543221 10 124455 89999999999987643
Q ss_pred cCC---CCCCCCCCCCeeeCCCCccccCCccchhhh------------hcCCCccEEECCCCCCCCCCCccCccccCCCC
Q 040699 72 VRG---QGFPHFKSLEHLDMSSTRIALNTSFLQIIG------------ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLM 136 (689)
Q Consensus 72 ~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~------------~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~ 136 (689)
.+. ..++.-..|.+|.+++|.++ ......++ .+-|.|++.....|..........+..+..-.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG--p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG--PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC--ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 332 14456678999999998872 11122222 12466777777777332211112222344446
Q ss_pred CCCEEeCCCCcCccC-----CCccccCCCCCcEEEccceeeeee---cCcccccCCCCCCEEeccCCcceeecCcccc--
Q 040699 137 HLQELYMADNDLRGS-----LPWCLANMTSLRILYVSYNQLTGS---ISSSPLVHLTSIEKLYLSNNHFRIPISLEPL-- 206 (689)
Q Consensus 137 ~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-- 206 (689)
+|+++.+..|.|.-. .-..+..+.+|+.||+.+|-++.. +-..++...+.|+.|.+.+|-++.......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 777888877766411 111234567788888888877621 1111344456677788777766533222111
Q ss_pred ---cCCCCcceeeccCCccc
Q 040699 207 ---FNHSRLKIFYADNNELN 223 (689)
Q Consensus 207 ---~~l~~L~~L~l~~n~~~ 223 (689)
...++|..|...+|.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhcCCCccccccchhhhc
Confidence 12355566666665543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=2e-06 Score=94.22 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCCEEECCCCCCCCcchh-HHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCC
Q 040699 31 TNLEYLSLDFSSLHISLLQ-SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS 109 (689)
Q Consensus 31 ~~L~~L~L~~~~i~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 109 (689)
.+|++|++++...-...++ .++.++|.|+.|.+++-.+....-.....++++|+.||+|++++ ..+ ..+.. +++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl-~GIS~-Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNL-SGISR-LKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCc-HHHhc-ccc
Confidence 4566666665433333233 55555666666666654443221111334556666666666665 111 44444 666
Q ss_pred ccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCC------CccccCCCCCcEEEccceeeeeecCccccc
Q 040699 110 LKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL------PWCLANMTSLRILYVSYNQLTGSISSSPLV 182 (689)
Q Consensus 110 L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 182 (689)
|+.|.+.+- +... ..+ ..+-+|++|++||+|........ -+.-..+|+||.||.|++.+.+.+-...+.
T Consensus 197 Lq~L~mrnLe~e~~--~~l--~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 197 LQVLSMRNLEFESY--QDL--IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HHHHhccCCCCCch--hhH--HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 666665543 1110 001 13455666666666655443211 112234778888888887776554443333
Q ss_pred CCCCCCEEec
Q 040699 183 HLTSIEKLYL 192 (689)
Q Consensus 183 ~l~~L~~L~l 192 (689)
..++|+.+.+
T Consensus 273 sH~~L~~i~~ 282 (699)
T KOG3665|consen 273 SHPNLQQIAA 282 (699)
T ss_pred hCccHhhhhh
Confidence 4445554443
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.03 E-value=1.3e-05 Score=69.12 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=40.6
Q ss_pred cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS 434 (689)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 434 (689)
+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344444445444443 233 444444444444555554442 4444444444444455555443 222233334444555
Q ss_pred CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCC
Q 040699 435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLL 483 (689)
Q Consensus 435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 483 (689)
|+.+++..+ +......+|.+. .++.+.+.. .+..+....|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555433 332333344443 555554443 2222333444444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=1.1e-06 Score=96.17 Aligned_cols=200 Identities=22% Similarity=0.195 Sum_probs=122.8
Q ss_pred CCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcc--------hhHHh------hcCCCCcEEECCCCcCCcc
Q 040699 6 SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISL--------LQSIA------SIFPSLKNLSMSGCEVNGL 71 (689)
Q Consensus 6 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~--------~~~~~------~~l~~L~~L~Ls~n~l~~~ 71 (689)
+++..++.+..... ...+.+.... |++|.|.+-...... +..+. ..-.+|++|++++......
T Consensus 61 ~ltki~l~~~~~~~--~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQH--QTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred eeEEeeccceecch--hHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 34556665554443 3334444444 888888753211111 11111 1126899999988643211
Q ss_pred -cCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc
Q 040699 72 -VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG 150 (689)
Q Consensus 72 -~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 150 (689)
.+...-..+|+|++|.+++-.+ ...-...+..++|+|..||+|++.+.. + ..++++++|++|.+.+-.+..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~n----l--~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISN----L--SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred cHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccC----c--HHHhccccHHHHhccCCCCCc
Confidence 1111123579999999998877 334356677779999999999985554 4 368899999999998876653
Q ss_pred -CCCccccCCCCCcEEEccceeeeeecCc------ccccCCCCCCEEeccCCcceeecCcccccCCCCcceeec
Q 040699 151 -SLPWCLANMTSLRILYVSYNQLTGSISS------SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYA 217 (689)
Q Consensus 151 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 217 (689)
..-..+.++++|++||+|..+.. ..+. .--..+|+|+.||.+++.+....-..-+...++|+....
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 22235668999999999987654 2111 012348899999999987764333222333455555443
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.00 E-value=1.6e-05 Score=68.50 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=51.4
Q ss_pred ChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccC
Q 040699 328 PLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFN 407 (689)
Q Consensus 328 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 407 (689)
+...+..+++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++..+|.++++++.+.+.+ .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 334444445555555553 344444455666656666666553 43 55555666565666666644 444444455555
Q ss_pred CCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCC
Q 040699 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL 459 (689)
Q Consensus 408 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 459 (689)
+++|+.+.+..+ +.......|.++ +|+.+.+.. .+......+|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666666544 444444556665 666666654 3333444555555554
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=5.2e-07 Score=74.11 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=91.7
Q ss_pred CCcEEEcCCCccccCCccccc---CCCCCcEEeccccccccccccCCCcccCCCchhhcc-ccccceEeccCcccccCCc
Q 040699 458 RLQYIIMPNNHLEGPIPVEFC---QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN-LTRIQTLNLSHNDLTGSIP 533 (689)
Q Consensus 458 ~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~ 533 (689)
-+..++|+.|++. -+++... ....|+..+|++|.+. ..|+.|.. .+..+.|++++|.++ .+|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk------------~fp~kft~kf~t~t~lNl~~neis-dvP 93 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK------------KFPKKFTIKFPTATTLNLANNEIS-DVP 93 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh------------hCCHHHhhccchhhhhhcchhhhh-hch
Confidence 4556788888765 2344433 4455666788888876 56776655 458999999999999 566
Q ss_pred ccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccC-cccccCCcCCCCCC
Q 040699 534 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFN-ENSYEGNTFLCGLP 605 (689)
Q Consensus 534 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~-~~~~~~n~~~c~~~ 605 (689)
..+..++.|+.|+++.|++. ..|..+..+.+|..||..+|... .+|-.. ..++.. -+.+..+||--+|+
T Consensus 94 eE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL-FYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred HHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH-hccccHHHHHhcCCcccccCc
Confidence 67999999999999999998 67888888999999999999765 333321 122222 23445556655544
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.5e-05 Score=52.94 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=27.8
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHI 45 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~ 45 (689)
++|++|++++|+|++ ++..+.+|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD---LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc---cCchHhCCCCCCEEEecCCCCCC
Confidence 578888888888876 45567888888888888888774
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.3e-05 Score=70.84 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=74.0
Q ss_pred CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699 8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD 87 (689)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 87 (689)
+++||.+.++..++.+. .-......+||+.|.+.. ++.+.. +++|..|.+++|+|+.+.+. --.-+++|..|.
T Consensus 22 ~e~~LR~lkip~ienlg---~~~d~~d~iDLtdNdl~~--l~~lp~-l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLG---ATLDQFDAIDLTDNDLRK--LDNLPH-LPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLI 94 (233)
T ss_pred cccccccccccchhhcc---ccccccceecccccchhh--cccCCC-ccccceEEecCCcceeeccc-hhhhccccceEE
Confidence 46677776665532211 113456667777776654 344555 67777888888877754432 223346677777
Q ss_pred CCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCC
Q 040699 88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADN 146 (689)
Q Consensus 88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n 146 (689)
+.+|++-.-+.+ ..+.. ||.|++|.+-+|....... --...+..+|+|++||.++-
T Consensus 95 LtnNsi~~l~dl-~pLa~-~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 95 LTNNSIQELGDL-DPLAS-CPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCcchhhhhhc-chhcc-CCccceeeecCCchhcccC-ceeEEEEecCcceEeehhhh
Confidence 777776211222 12223 7788888777773322111 11134678888888888754
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2e-05 Score=69.71 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=79.8
Q ss_pred hhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCccccc
Q 040699 103 IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182 (689)
Q Consensus 103 ~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 182 (689)
++....+...+||++|.+.. + ..|..++.|.+|.|++|+|+.+.|.--..+++|+.|.+.+|.|...-.-..+.
T Consensus 37 lg~~~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred ccccccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence 33335567788888874433 3 25778889999999999999777776667788999999999887322223467
Q ss_pred CCCCCCEEeccCCcceeec--CcccccCCCCcceeeccCC
Q 040699 183 HLTSIEKLYLSNNHFRIPI--SLEPLFNHSRLKIFYADNN 220 (689)
Q Consensus 183 ~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n 220 (689)
.++.|++|.+-+|+.+... -...+..+++|+.||+..-
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7889999999988876211 1223567788888887764
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.9e-05 Score=52.52 Aligned_cols=36 Identities=42% Similarity=0.756 Sum_probs=17.9
Q ss_pred ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCC
Q 040699 517 RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553 (689)
Q Consensus 517 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 553 (689)
+|++|++++|+++. +|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555552 3334555555555555555554
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00014 Score=73.47 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCC
Q 040699 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN 395 (689)
Q Consensus 335 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 395 (689)
+.+++.|++++|.++. +|. -..+|+.|.++++.-...+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 3566666666665552 331 12346666666543322444332 235556666555
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00025 Score=71.72 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=16.0
Q ss_pred CCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467 (689)
Q Consensus 433 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 467 (689)
++|++|++++|... ..|..+. .+|++|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35666666655543 2333222 45666665554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=0.00011 Score=68.17 Aligned_cols=107 Identities=27% Similarity=0.269 Sum_probs=49.2
Q ss_pred CCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCC--cCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcC
Q 040699 30 FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC--EVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107 (689)
Q Consensus 30 ~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 107 (689)
+..|+.|++.+..++. +..+.. +|+|++|.++.| ++.+.... ....+++|++|++++|++.. -.....+.. +
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~-Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~-lstl~pl~~-l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPK-LPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD-LSTLRPLKE-L 115 (260)
T ss_pred ccchhhhhhhccceee--cccCCC-cchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc-ccccchhhh-h
Confidence 4445555555444433 233444 566666666666 33322211 23344666666666666521 111122222 5
Q ss_pred CCccEEECCCCCCCCCCCccCccccCCCCCCCEEeC
Q 040699 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYM 143 (689)
Q Consensus 108 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L 143 (689)
.+|..|++.+|.... ..+-....|.-+++|++|+=
T Consensus 116 ~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 566666666662111 11111223555666666654
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=0.00014 Score=78.73 Aligned_cols=112 Identities=31% Similarity=0.325 Sum_probs=64.7
Q ss_pred CCCCCEEeCCCCC-CCCccccchhhcCCCCCCEEECCCC--CCCCcc--hhHHhhcCCCCcEEECCCCc-CCcccCCCCC
Q 040699 4 FPSLNTLYLLFNN-FTDIATTAQELHSFTNLEYLSLDFS--SLHISL--LQSIASIFPSLKNLSMSGCE-VNGLVRGQGF 77 (689)
Q Consensus 4 l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~L~~L~L~~~--~i~~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 77 (689)
+++|+.|.+.++. +.. +.+......+++|+.|+++.+ .+.... ...+...+++|+.|+++++. +++..-....
T Consensus 187 ~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITD-DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCCh-hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5677777777663 332 123455667778888888763 111111 12344446777888887776 4322111111
Q ss_pred CCCCCCCeeeCCCCc-cccCCccchhhhhcCCCccEEECCCC
Q 040699 78 PHFKSLEHLDMSSTR-IALNTSFLQIIGESMPSLKYLSLSNS 118 (689)
Q Consensus 78 ~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~L~~L~Ls~~ 118 (689)
..+++|++|.+..+. + ++.....+...++.|+.|+++.|
T Consensus 266 ~~c~~L~~L~l~~c~~l--t~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNL--TDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhCCCcceEccCCCCcc--chhHHHHHHHhcCcccEEeeecC
Confidence 236777777766665 4 44445555555777888888877
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=9.5e-05 Score=80.17 Aligned_cols=138 Identities=26% Similarity=0.249 Sum_probs=91.2
Q ss_pred hcCCCCCCEEECCCC-CCCCcchhHHhhcCCCCcEEECCCC-cCCcccC---CCCCCCCCCCCeeeCCCCc-cccCCccc
Q 040699 27 LHSFTNLEYLSLDFS-SLHISLLQSIASIFPSLKNLSMSGC-EVNGLVR---GQGFPHFKSLEHLDMSSTR-IALNTSFL 100 (689)
Q Consensus 27 ~~~~~~L~~L~L~~~-~i~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~~~~ 100 (689)
...++.|+.|.+..+ .+....+..+...++.|+.|+++++ ......+ ......+++|+.|+++++. + ++...
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--sd~~l 261 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--TDIGL 261 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc--CchhH
Confidence 345899999999987 5555445555555999999999973 2111111 1134567899999999988 6 55566
Q ss_pred hhhhhcCCCccEEECCCCC-CCCCCCccCccccCCCCCCCEEeCCCCcCcc--CCCccccCCCCCcEEEccc
Q 040699 101 QIIGESMPSLKYLSLSNST-RGTNSSRILDQGLCSLMHLQELYMADNDLRG--SLPWCLANMTSLRILYVSY 169 (689)
Q Consensus 101 ~~~~~~l~~L~~L~Ls~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 169 (689)
..+...+++|+.|.+.+|. ....+ +. .....++.|++|+++++.... .......++++|+.|.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~g--l~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEG--LV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhH--HH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 6666669999999988884 22211 22 245678999999999886531 1222344577766655433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=6.4e-05 Score=69.84 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchh-hhhcC
Q 040699 29 SFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQI-IGESM 107 (689)
Q Consensus 29 ~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~l 107 (689)
.+.+.+.|+.=+|.+++. +++..|+.|++|.||-|.|+... .+..|++|++|+|..|.|. .+.+. -..++
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~---sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIE---SLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccc---cHHHHHHHhcC
Confidence 355667777777777653 33444778888888887776442 4677788888888777772 22111 12347
Q ss_pred CCccEEECCCCCC-CCCCCccCccccCCCCCCCEEe
Q 040699 108 PSLKYLSLSNSTR-GTNSSRILDQGLCSLMHLQELY 142 (689)
Q Consensus 108 ~~L~~L~Ls~~~~-~~~~~~~~~~~l~~l~~L~~L~ 142 (689)
|+|+.|.|..|.. +..+..--...+.-+|+|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7788887777622 2211111122456677777776
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00074 Score=62.79 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=40.7
Q ss_pred CccEEeccCCcccccccccccCCCCCCEEECCCC--CCCCcCChhhcCCCCCcEEEcCCCccccC-CcccccCCCCCcEE
Q 040699 410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN--NLSGKIPRWLGDLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQIL 486 (689)
Q Consensus 410 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 486 (689)
.|+.|++.+..++.. ..|..+++|+.|.++.| ++.+.++.....+++|+++++++|++... .-.....+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 344444444433322 23445556666666666 44444444444446666666666665521 00113344556666
Q ss_pred eccccccc
Q 040699 487 DISDNNIS 494 (689)
Q Consensus 487 ~l~~n~~~ 494 (689)
++.+|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 66666554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00011 Score=68.35 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCC
Q 040699 4 FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL 83 (689)
Q Consensus 4 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 83 (689)
+.+.+.|+.=++.+.++ .....|+.|++|.|+-|+|+. +..+.+ |++|+.|.|..|.|.+......+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIss--L~pl~r-CtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISS--LAPLQR-CTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH----HHHHhcccceeEEeecccccc--chhHHH-HHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 44566777777777763 335677888888888887775 566666 78888888888877655444456777888
Q ss_pred CeeeCCCCccccCCccc----hhhhhcCCCccEEE
Q 040699 84 EHLDMSSTRIALNTSFL----QIIGESMPSLKYLS 114 (689)
Q Consensus 84 ~~L~L~~~~~~~~~~~~----~~~~~~l~~L~~L~ 114 (689)
|.|.|..|.- .+... ..+...+|+|++||
T Consensus 91 r~LWL~ENPC--c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPC--CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCc--ccccchhHHHHHHHHcccchhcc
Confidence 8888877653 12211 22334477777775
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.13 E-value=0.00021 Score=75.12 Aligned_cols=271 Identities=22% Similarity=0.219 Sum_probs=137.8
Q ss_pred CCCCCCcCEEEccCCcCcccCChhhhhcC----CCceEEEccCCcCCcc----ccccccCCCCCcEEeccCCccccc---
Q 040699 307 IHSHKRLGMLDISNNNFRGHIPLEIGDIL----PSLHVFNISMNALDGS----IPSSFGNMNFLRILDLSNNQLTGE--- 375 (689)
Q Consensus 307 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~--- 375 (689)
+...+.|+.|++++|.+.+..-......+ ..++.|.+..|.++.. +...+.....++.++++.|.+...
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 33445555566666555422221121111 2344555555655432 233444566677777777765311
Q ss_pred -chhhh---hcCCCCCCEEEccCCcCCccCc----ccccCCCC-ccEEeccCCccccc----ccccccCC-CCCCEEECC
Q 040699 376 -IPEHL---AVGCVNLESLVLSNNSLKGHMF----SRNFNLAN-LMSLQLEGNHFIGE----ISQSLSKC-SSLEGLFLN 441 (689)
Q Consensus 376 -~~~~~---~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~-L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~L~ 441 (689)
++... +....++++|++.+|.++.... ..+...+. +..|++..|++... ....+..+ ..+++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 11111 1124567777777776653211 22333444 66678887776432 22334455 567888888
Q ss_pred CCCCCCcC----ChhhcCCCCCcEEEcCCCccccCCc----ccccCCCCCcEEeccccccccc-----------------
Q 040699 442 NNNLSGKI----PRWLGDLTRLQYIIMPNNHLEGPIP----VEFCQLDLLQILDISDNNISGR----------------- 496 (689)
Q Consensus 442 ~n~i~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~----------------- 496 (689)
.|.|+... ...+..+++++++.+++|.+..... ........+..+.+.++..-..
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLS 350 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhH
Confidence 88877433 3445566778888888887653211 1122223444444444332211
Q ss_pred -cccCCCcccCC----Cchhhcccc-ccceEeccCccccc----CCcccccCCCCCCEEeCcCCcCCCCCchhc-----c
Q 040699 497 -LDLSCNKLIGP----IPPKIGNLT-RIQTLNLSHNDLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQL-----V 561 (689)
Q Consensus 497 -l~ls~n~l~~~----~~~~~~~l~-~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~ 561 (689)
.+.+.+..... ......+.+ .+..+++..+.+.+ .++..+.....++.++++.|......+..+ .
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~ 430 (478)
T KOG4308|consen 351 ELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSR 430 (478)
T ss_pred HHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhh
Confidence 11222211100 001112222 25556666655543 233445667888999999988765444332 2
Q ss_pred CCCCCCEEeccCCcCcC
Q 040699 562 ELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 562 ~l~~L~~L~l~~N~l~~ 578 (689)
+. .++.++++.|+++.
T Consensus 431 ~~-~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 431 NG-SLKALRLSRNPITA 446 (478)
T ss_pred cc-cchhhhhccChhhh
Confidence 34 78888889888764
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.017 Score=31.67 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=6.0
Q ss_pred cceEeccCcccc
Q 040699 518 IQTLNLSHNDLT 529 (689)
Q Consensus 518 L~~L~L~~n~l~ 529 (689)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555555444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.16 E-value=0.021 Score=31.34 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=13.1
Q ss_pred CCCEEeCcCCcCCCCCchhcc
Q 040699 541 HVESLDLSNNKLNGKIPHQLV 561 (689)
Q Consensus 541 ~L~~L~L~~N~l~~~~~~~~~ 561 (689)
+|++||+++|+++ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777777 5555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.95 E-value=0.0005 Score=72.37 Aligned_cols=190 Identities=25% Similarity=0.217 Sum_probs=85.1
Q ss_pred CCEEECCCCCCCCcchhHHhh---cCCCCcEEECCCCcCCcccC---CCCCCCC-CCCCeeeCCCCccccC--Cccchhh
Q 040699 33 LEYLSLDFSSLHISLLQSIAS---IFPSLKNLSMSGCEVNGLVR---GQGFPHF-KSLEHLDMSSTRIALN--TSFLQII 103 (689)
Q Consensus 33 L~~L~L~~~~i~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~---~~~~~~l-~~L~~L~L~~~~~~~~--~~~~~~~ 103 (689)
+..|.|.+|.+.......+.. ..+.|+.|++++|.+.+.-. ...+... ..|++|++..|.++.. ..+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 445555555555443332221 23445555555555431100 0011221 3445555555554211 1122223
Q ss_pred hhcCCCccEEECCCCCCCCCCCccCccccC----CCCCCCEEeCCCCcCccC----CCccccCCCC-CcEEEccceeeee
Q 040699 104 GESMPSLKYLSLSNSTRGTNSSRILDQGLC----SLMHLQELYMADNDLRGS----LPWCLANMTS-LRILYVSYNQLTG 174 (689)
Q Consensus 104 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~ 174 (689)
.. ...++.++++.|.............+. ...++++|.+++|.++.. ....+...++ +..|++..|++.+
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 33 455556666655221111111111222 355666677766665521 1122334444 5556676666542
Q ss_pred e----cCcccccCC-CCCCEEeccCCcceeecC---cccccCCCCcceeeccCCcccc
Q 040699 175 S----ISSSPLVHL-TSIEKLYLSNNHFRIPIS---LEPLFNHSRLKIFYADNNELNA 224 (689)
Q Consensus 175 ~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~ 224 (689)
. ..+ .+..+ ..+++++++.|.++.... ...+..++.++.+.+..|.+..
T Consensus 248 ~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 111 12233 456677777777653211 1224455677777777776654
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.0094 Score=53.32 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=15.6
Q ss_pred CCEEECCCCCCCCcchhHHhhcCCCCcEEECCCC
Q 040699 33 LEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC 66 (689)
Q Consensus 33 L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n 66 (689)
++.++-+++.|..+++..+.. ++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc-cchhhhheeccc
Confidence 344444444444444444444 444555554444
No 76
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.97 E-value=0.09 Score=65.08 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=53.2
Q ss_pred eCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCC
Q 040699 546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNER 624 (689)
Q Consensus 546 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~ 624 (689)
||++|+|+.+.++.|..+++|+.|+|++||+.|.|.- |+..+..-..... -......|..|...+++++.++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v------~~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKV------RQPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccc------cCCcccCCCCChHHCCCCcccCC
Confidence 6889999988888899999999999999999998864 3332221111110 00112268889888888888777
Q ss_pred CCCc
Q 040699 625 DDNL 628 (689)
Q Consensus 625 ~~~~ 628 (689)
.+++
T Consensus 75 ~~d~ 78 (2740)
T TIGR00864 75 LLDS 78 (2740)
T ss_pred cccC
Confidence 6554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.79 E-value=0.0085 Score=54.64 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=28.2
Q ss_pred hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCc
Q 040699 512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575 (689)
Q Consensus 512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 575 (689)
|+-++.|..|+++.|.+. ..|..++++..++.+++.+|..+ ..|..+...+.++.+++.+|+
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 333444444444444444 33444444444444444444444 334444444444444444444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.40 E-value=0.27 Score=28.14 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=9.1
Q ss_pred CCCCEEeCcCCcCCCC
Q 040699 540 KHVESLDLSNNKLNGK 555 (689)
Q Consensus 540 ~~L~~L~L~~N~l~~~ 555 (689)
++|++|+|++|+|..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666544
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.40 E-value=0.27 Score=28.14 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=9.1
Q ss_pred CCCCEEeCcCCcCCCC
Q 040699 540 KHVESLDLSNNKLNGK 555 (689)
Q Consensus 540 ~~L~~L~L~~N~l~~~ 555 (689)
++|++|+|++|+|..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.21 E-value=0.21 Score=28.66 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=15.7
Q ss_pred ccccceEeccCcccccCCccccc
Q 040699 515 LTRIQTLNLSHNDLTGSIPSTFS 537 (689)
Q Consensus 515 l~~L~~L~L~~n~l~~~~~~~~~ 537 (689)
+++|+.|+|++|+++.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35678888888888766555553
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.21 E-value=0.21 Score=28.66 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=15.7
Q ss_pred ccccceEeccCcccccCCccccc
Q 040699 515 LTRIQTLNLSHNDLTGSIPSTFS 537 (689)
Q Consensus 515 l~~L~~L~L~~n~l~~~~~~~~~ 537 (689)
+++|+.|+|++|+++.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35678888888888766555553
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.48 E-value=0.24 Score=25.11 Aligned_cols=11 Identities=82% Similarity=1.093 Sum_probs=3.6
Q ss_pred CcEEeccCCcc
Q 040699 362 LRILDLSNNQL 372 (689)
Q Consensus 362 L~~L~l~~n~l 372 (689)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=0.047 Score=49.03 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCEEEccCCcCCccCcccccCCCCccEEeccCCccccc-ccccc-cCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEE
Q 040699 387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE-ISQSL-SKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYII 463 (689)
Q Consensus 387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~ 463 (689)
++.++-++..|..+....+.++++++.|.+.+|+-.+. .-+.+ .-.++|+.|++++| +|+...-.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34444444444444444444455555555555442111 00001 12345666666655 44444444555555555555
Q ss_pred cCC
Q 040699 464 MPN 466 (689)
Q Consensus 464 l~~ 466 (689)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.07 E-value=0.027 Score=51.48 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=62.7
Q ss_pred hcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCC
Q 040699 453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI 532 (689)
Q Consensus 453 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 532 (689)
+......+.||++.|++. -.-.-|+-++.|..||++.|.+. ..|..+.....++.+++..|..+ ..
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~------------~~~~d~~q~~e~~~~~~~~n~~~-~~ 103 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK------------FLPKDAKQQRETVNAASHKNNHS-QQ 103 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh------------hChhhHHHHHHHHHHHhhccchh-hC
Confidence 334456667777777665 33344666677777777777765 67777777778888888888877 67
Q ss_pred cccccCCCCCCEEeCcCCcCC
Q 040699 533 PSTFSNLKHVESLDLSNNKLN 553 (689)
Q Consensus 533 ~~~~~~l~~L~~L~L~~N~l~ 553 (689)
|.+++..++++++++-.|.+.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 778888888888888888765
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.23 E-value=3.9 Score=42.05 Aligned_cols=190 Identities=15% Similarity=0.038 Sum_probs=89.4
Q ss_pred CCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCC--CCCCCCCCCeeeCCCCccccCCccchhhhh--c
Q 040699 31 TNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQ--GFPHFKSLEHLDMSSTRIALNTSFLQIIGE--S 106 (689)
Q Consensus 31 ~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~--~ 106 (689)
+.+++++++.|.+....-..+.. +-. -++++.|..+...... .-+.=..+.+++++.|.. .+.++..+.. .
T Consensus 165 pr~r~~dls~npi~dkvpihl~~--p~~-pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~--Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ--PGN-PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGG--KDDIPRTLNKKAG 239 (553)
T ss_pred chhhhhccCCCcccccCCccccC--CCC-ccchhhhhhhhhHHHHhhhhhccccccccccccCCC--CccchhHHHHhhh
Confidence 45777888877766552223332 111 1566666554221000 001114577888888776 4444443321 1
Q ss_pred CCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc--------CCCccccCCCCCcEEEccceeeeeecCc
Q 040699 107 MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG--------SLPWCLANMTSLRILYVSYNQLTGSISS 178 (689)
Q Consensus 107 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 178 (689)
-.-++.++.+......... ..+...+.-+++++.+++.|..+. ..-+.|..-+++ +|++..++...+-+.
T Consensus 240 ~~vl~~ld~s~tgirlD~l-~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lk 317 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLL-TSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLK 317 (553)
T ss_pred hhhhhcccccccccchhhc-ccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhh
Confidence 2346666666651111000 111134455678888887775532 122345555566 777766654422221
Q ss_pred ccccCC-----CCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccccc
Q 040699 179 SPLVHL-----TSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT 227 (689)
Q Consensus 179 ~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 227 (689)
..+-.+ +.=-.+++..|........+.-.+-..++++....|...++..
T Consensus 318 s~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 318 SMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred hhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccc
Confidence 111111 1112455555554422222222223457777777777765443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.12 E-value=0.68 Score=26.53 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=12.9
Q ss_pred CCCCCEEeCCCCCCCCc
Q 040699 4 FPSLNTLYLLFNNFTDI 20 (689)
Q Consensus 4 l~~L~~L~Ls~n~i~~~ 20 (689)
+++|++|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46788888888887764
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.38 E-value=0.31 Score=27.25 Aligned_cols=14 Identities=50% Similarity=0.570 Sum_probs=5.3
Q ss_pred CCCCEEeCCCCCCC
Q 040699 5 PSLNTLYLLFNNFT 18 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~ 18 (689)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444433
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.57 E-value=2.1 Score=25.00 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=6.0
Q ss_pred CCCEEECCCCCCCC
Q 040699 32 NLEYLSLDFSSLHI 45 (689)
Q Consensus 32 ~L~~L~L~~~~i~~ 45 (689)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 34444444444443
No 89
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=72.84 E-value=4.4 Score=25.88 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=3.0
Q ss_pred hhhhchh
Q 040699 655 VNSYWRR 661 (689)
Q Consensus 655 ~~~~~~~ 661 (689)
++.||||
T Consensus 32 l~~~~rR 38 (40)
T PF08693_consen 32 LFFWYRR 38 (40)
T ss_pred hheEEec
Confidence 3344544
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.89 E-value=3.4 Score=43.43 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCCCCCEEECCCCCCCCcc-hhHHhhcCCCCcEEECCCC--cCCcccCCCCCCCCCCCCeeeCCCCcc
Q 040699 29 SFTNLEYLSLDFSSLHISL-LQSIASIFPSLKNLSMSGC--EVNGLVRGQGFPHFKSLEHLDMSSTRI 93 (689)
Q Consensus 29 ~~~~L~~L~L~~~~i~~~~-~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~L~~~~~ 93 (689)
+.+.+..++|++|++...+ +.++...-|+|+.|+|++| .+........+.. ..|++|-+.+|.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcc
Confidence 3455666667666655421 2345555667777777776 3322211112222 2356666777665
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=71.71 E-value=2 Score=54.01 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=33.9
Q ss_pred eccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC
Q 040699 570 SVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP 607 (689)
Q Consensus 570 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~ 607 (689)
||++|+|+...+..+..+.+++.+++.+|||.|+|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 68999999877778888889999999999999999875
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.39 E-value=23 Score=36.74 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=28.0
Q ss_pred cceEeccCcccccCCcc---cccCCCCCCEEeCcCCcCCC----CCchhccCCCCCCEEeccCCc
Q 040699 518 IQTLNLSHNDLTGSIPS---TFSNLKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNN 575 (689)
Q Consensus 518 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~ 575 (689)
+..+.++.|.+...... ....-+.+..|++++|.... .+|..+.....++.+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 44555555555432221 12333556666666665442 234444444555555555553
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.30 E-value=5.3 Score=22.73 Aligned_cols=10 Identities=30% Similarity=0.042 Sum_probs=4.0
Q ss_pred CCCEEeCCCC
Q 040699 6 SLNTLYLLFN 15 (689)
Q Consensus 6 ~L~~L~Ls~n 15 (689)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.75 E-value=6.1 Score=22.61 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=7.4
Q ss_pred CCCEEeCcCCcCC
Q 040699 541 HVESLDLSNNKLN 553 (689)
Q Consensus 541 ~L~~L~L~~N~l~ 553 (689)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.03 E-value=5.6 Score=41.91 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=50.3
Q ss_pred CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCC--CCCCcchhHHhh-cCCCCcEEECCCCcCCc
Q 040699 2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFS--SLHISLLQSIAS-IFPSLKNLSMSGCEVNG 70 (689)
Q Consensus 2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~--~i~~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 70 (689)
.+++.+..++|++|++..++.+...-+..++|..|+|++| .+... ..+.+ ....|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 3678899999999999887776665677899999999999 44432 22222 14678899999998763
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.05 E-value=7.4 Score=32.37 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=8.1
Q ss_pred eeeehhhhHHHHHHHHHH
Q 040699 636 ITFTTSYVIVIFGIVIVL 653 (689)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~ 653 (689)
++++++++++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 344444444444444433
No 97
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=48.00 E-value=4.4 Score=27.60 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 040699 608 ICRSPATMS 616 (689)
Q Consensus 608 ~c~~~~~~~ 616 (689)
.|..|+...
T Consensus 29 ~C~~P~~~~ 37 (51)
T smart00082 29 RCASPSSLR 37 (51)
T ss_pred EeCCcHHHH
Confidence 455555444
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=45.04 E-value=37 Score=27.06 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=8.3
Q ss_pred eeeeeehhhhHHHHHHHHH
Q 040699 634 FFITFTTSYVIVIFGIVIV 652 (689)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~ 652 (689)
.+++++++.++++.+++.+
T Consensus 67 aiagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGF 85 (96)
T ss_pred cEEEEEeehhhHHHHHHHH
Confidence 3445555544444333333
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=43.94 E-value=11 Score=32.27 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=3.5
Q ss_pred HHhhhhhch
Q 040699 652 VLYVNSYWR 660 (689)
Q Consensus 652 ~~~~~~~~~ 660 (689)
+++++++||
T Consensus 78 lv~~~kRkr 86 (146)
T PF15102_consen 78 LVIYYKRKR 86 (146)
T ss_pred heeEEeecc
Confidence 333334444
No 100
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=39.20 E-value=21 Score=29.46 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHhhhhhchhhhhhhHH
Q 040699 640 TSYVIVIFGIVIVLYVNSYWRRRWFYFVE 668 (689)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (689)
+++.+++++.++.+++++|+|+++.-..+
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~~ 135 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQD 135 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchhh
Confidence 33333444444556677777777665444
No 101
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=35.82 E-value=41 Score=30.87 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=13.9
Q ss_pred ceeeeeehhhhHHHHHHHHHHhhh
Q 040699 633 SFFITFTTSYVIVIFGIVIVLYVN 656 (689)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~ 656 (689)
.++++++.++++++++++++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHH
Confidence 455666666666665555555554
No 102
>PF15050 SCIMP: SCIMP protein
Probab=34.32 E-value=14 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=14.1
Q ss_pred eeeeehhhhHHHHHHHHHHhhhhhchhhhh
Q 040699 635 FITFTTSYVIVIFGIVIVLYVNSYWRRRWF 664 (689)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (689)
+|.+++.++++-+++.+++|+.++|..+.-
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lRqG 38 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLRQG 38 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444444433333444445565566554433
No 103
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.37 E-value=28 Score=30.08 Aligned_cols=12 Identities=8% Similarity=-0.169 Sum_probs=6.9
Q ss_pred eeeeeehhhhHH
Q 040699 634 FFITFTTSYVIV 645 (689)
Q Consensus 634 ~~~~~~~~~~~~ 645 (689)
.+|++++++.+.
T Consensus 50 IVIGvVVGVGg~ 61 (154)
T PF04478_consen 50 IVIGVVVGVGGP 61 (154)
T ss_pred EEEEEEecccHH
Confidence 466666665443
No 104
>PRK01844 hypothetical protein; Provisional
Probab=25.71 E-value=35 Score=25.17 Aligned_cols=25 Identities=8% Similarity=0.359 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHhhhhhchhhhhh
Q 040699 641 SYVIVIFGIVIVLYVNSYWRRRWFY 665 (689)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (689)
+++++++++++.+++.+++-++|+.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666654
No 105
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.58 E-value=48 Score=32.73 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=4.0
Q ss_pred HHhhhhhchh
Q 040699 652 VLYVNSYWRR 661 (689)
Q Consensus 652 ~~~~~~~~~~ 661 (689)
++|+..++||
T Consensus 274 IIYLILRYRR 283 (299)
T PF02009_consen 274 IIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHH
Confidence 3343344444
No 106
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=23.55 E-value=46 Score=24.22 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=18.7
Q ss_pred cceeeeeehhhhHHHHHHHHHHhhhhhchhh
Q 040699 632 NSFFITFTTSYVIVIFGIVIVLYVNSYWRRR 662 (689)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (689)
.+..|+++.++++.++..+.-+|++++..++
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhhHhhh
Confidence 3455666666666666666667766655444
No 107
>PRK00523 hypothetical protein; Provisional
Probab=22.79 E-value=43 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhhhhhchhhhhh
Q 040699 643 VIVIFGIVIVLYVNSYWRRRWFY 665 (689)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~ 665 (689)
++++++++..+++.+++-++|+.
T Consensus 13 ~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 13 PLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666665554
No 108
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=20.30 E-value=63 Score=26.82 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHhhhhhchhhhh
Q 040699 652 VLYVNSYWRRRWF 664 (689)
Q Consensus 652 ~~~~~~~~~~~~~ 664 (689)
++++++.+|++.|
T Consensus 98 ~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 98 FLVWRRCRRREKF 110 (129)
T ss_dssp -------------
T ss_pred HHHHhhhhccccC
Confidence 3444444444443
Done!