Query 040699
Match_columns 689
No_of_seqs 415 out of 4394
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 17:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-68 8.6E-73 605.1 45.1 591 2-615 74-754 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.9E-62 1E-66 555.3 40.7 578 5-605 50-721 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-59 1E-63 526.6 45.8 606 5-630 25-672 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-55 4E-60 497.3 50.6 578 1-606 45-655 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.5E-55 1.2E-59 487.0 41.9 563 8-625 15-603 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-54 4.9E-59 497.4 39.1 567 8-629 7-608 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-53 1.4E-57 470.3 38.2 573 7-628 13-604 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2E-52 7E-57 464.7 41.1 524 5-582 33-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 7E-52 2.4E-56 460.4 37.6 517 5-557 32-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-50 3.9E-55 465.0 37.1 522 4-582 23-565 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.8E-47 6.3E-52 422.0 36.2 512 7-582 9-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1E-45 3.5E-50 408.1 34.8 500 5-558 28-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-45 2.3E-49 399.4 35.2 488 30-581 4-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 7.6E-45 2.6E-49 398.9 35.3 492 4-557 4-514 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-44 7.1E-49 403.4 34.5 563 22-625 45-623 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-44 6.1E-49 392.9 25.5 459 59-581 3-485 (520)
17 4eco_A Uncharacterized protein 100.0 5.5E-44 1.9E-48 396.0 20.2 304 255-580 266-603 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 6.2E-42 2.1E-46 383.4 36.5 537 34-607 34-586 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-42 3.9E-47 378.7 27.8 465 8-557 3-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 3.9E-42 1.3E-46 386.4 24.7 400 136-575 423-862 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 2.3E-41 7.7E-46 380.2 28.7 390 161-605 424-870 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-41 1.1E-45 370.2 27.4 463 55-582 30-515 (562)
23 4eco_A Uncharacterized protein 100.0 2.9E-41 9.8E-46 374.2 25.4 450 108-603 81-602 (636)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-40 1.6E-44 360.8 27.4 227 312-557 277-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.6E-42 333.7 32.5 378 136-582 30-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-36 3.7E-41 325.9 25.6 343 253-606 45-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.1E-35 1.1E-39 311.3 27.1 390 80-583 10-417 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 1.2E-35 4.2E-40 319.3 24.3 335 253-604 25-359 (477)
29 2id5_A Lingo-1, leucine rich r 100.0 1.8E-35 6.3E-40 318.0 25.0 322 266-605 15-337 (477)
30 1jl5_A Outer protein YOPM; leu 100.0 8E-35 2.7E-39 308.1 26.3 386 107-602 10-410 (454)
31 1o6v_A Internalin A; bacterial 100.0 3.2E-33 1.1E-37 298.9 34.2 344 136-578 46-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 3.4E-33 1.2E-37 298.8 33.7 238 258-554 152-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-33 6.1E-38 298.1 24.3 353 107-583 41-393 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 5.6E-33 1.9E-37 294.3 28.0 354 55-560 41-394 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 7.7E-33 2.6E-37 289.2 25.2 314 257-604 64-377 (390)
36 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-33 1.4E-37 281.1 19.4 259 336-609 50-312 (313)
37 3o6n_A APL1; leucine-rich repe 100.0 5.4E-32 1.9E-36 282.8 25.1 315 260-606 43-357 (390)
38 3oja_B Anopheles plasmodium-re 100.0 4.3E-32 1.5E-36 299.0 25.6 317 254-604 67-383 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.3E-30 4.4E-35 268.1 30.8 304 260-600 42-345 (347)
40 4fmz_A Internalin; leucine ric 100.0 2.4E-30 8.1E-35 266.1 31.9 285 258-577 62-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.2E-31 1.1E-35 292.1 25.4 313 261-605 50-362 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-31 9E-36 267.8 15.4 255 311-581 50-308 (313)
43 1xku_A Decorin; proteoglycan, 100.0 1.9E-29 6.6E-34 257.0 29.1 288 263-574 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 6.6E-30 2.2E-34 260.6 25.2 267 311-598 54-330 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-30 2.2E-34 260.7 25.0 288 263-575 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5.1E-34 257.9 27.6 289 287-598 31-329 (330)
47 3zyj_A Leucine-rich repeat-con 100.0 1.1E-29 3.8E-34 269.4 23.9 292 312-628 44-337 (440)
48 3zyi_A Leucine-rich repeat-con 100.0 2.8E-29 9.6E-34 267.3 23.9 253 312-582 55-308 (452)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-32 4.6E-37 294.7 -2.0 359 160-577 3-411 (461)
50 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-32 4E-37 295.2 -5.1 160 408-578 255-441 (461)
51 3zyj_A Leucine-rich repeat-con 100.0 2.2E-28 7.6E-33 259.4 25.0 249 288-554 44-293 (440)
52 2z66_A Variable lymphocyte rec 100.0 4.9E-29 1.7E-33 251.2 18.7 286 314-623 10-302 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 6.3E-29 2.2E-33 255.7 17.4 281 286-582 30-319 (353)
54 3zyi_A Leucine-rich repeat-con 100.0 8.5E-28 2.9E-32 255.9 24.5 248 289-554 56-304 (452)
55 2z80_A TOLL-like receptor 2, v 100.0 8E-29 2.8E-33 254.9 15.5 279 309-605 29-318 (353)
56 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-28 1.1E-32 242.5 18.1 267 338-627 13-280 (285)
57 2z66_A Variable lymphocyte rec 100.0 4.6E-28 1.6E-32 244.1 17.1 279 290-585 10-295 (306)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-27 6.6E-32 236.8 20.1 254 314-584 14-268 (285)
59 3ogk_B Coronatine-insensitive 100.0 4.8E-30 1.7E-34 284.0 0.2 411 25-494 67-526 (592)
60 3ogk_B Coronatine-insensitive 99.9 9.5E-30 3.2E-34 281.7 1.5 298 262-574 220-548 (592)
61 4fcg_A Uncharacterized protein 99.9 1E-26 3.6E-31 235.5 19.5 225 335-576 80-313 (328)
62 3o53_A Protein LRIM1, AGAP0063 99.9 3.4E-28 1.2E-32 245.8 6.8 260 313-599 12-273 (317)
63 4fcg_A Uncharacterized protein 99.9 5.6E-26 1.9E-30 230.2 20.4 235 287-554 81-315 (328)
64 1wwl_A Monocyte differentiatio 99.9 1.2E-27 4.1E-32 241.2 4.9 246 311-578 43-310 (312)
65 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.8E-31 247.5 13.2 244 336-605 34-286 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.5E-32 240.4 4.7 244 309-579 32-278 (317)
67 2z62_A TOLL-like receptor 4, v 99.9 5.5E-25 1.9E-29 217.9 22.0 209 361-582 29-242 (276)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.5E-29 236.6 25.8 269 262-588 40-308 (622)
69 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.7E-33 273.4 -6.9 430 25-528 60-543 (594)
70 2z62_A TOLL-like receptor 4, v 99.9 4.2E-25 1.4E-29 218.8 18.6 228 364-606 11-242 (276)
71 1wwl_A Monocyte differentiatio 99.9 1.3E-26 4.4E-31 233.7 7.1 249 284-554 40-310 (312)
72 2o6q_A Variable lymphocyte rec 99.9 2.7E-24 9.2E-29 211.9 22.9 207 361-582 17-223 (270)
73 1p9a_G Platelet glycoprotein I 99.9 4.7E-24 1.6E-28 211.8 22.7 207 356-581 6-212 (290)
74 3oja_A Leucine-rich immune mol 99.9 1.2E-25 4E-30 240.3 11.9 246 310-582 33-287 (487)
75 2p1m_B Transport inhibitor res 99.9 1.6E-27 5.3E-32 264.1 -3.1 431 2-469 63-543 (594)
76 2o6q_A Variable lymphocyte rec 99.9 7.1E-24 2.4E-28 208.9 23.0 207 385-605 16-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 7.2E-24 2.5E-28 210.5 20.7 208 381-606 6-213 (290)
78 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-22 4.8E-27 220.7 30.1 259 287-602 40-298 (622)
79 3rfs_A Internalin B, repeat mo 99.9 2.2E-23 7.4E-28 205.6 15.7 226 337-587 20-245 (272)
80 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.4E-27 196.3 19.2 182 386-581 15-196 (251)
81 3rfs_A Internalin B, repeat mo 99.9 2.3E-22 7.8E-27 198.2 18.4 205 336-563 41-245 (272)
82 2xwt_C Thyrotropin receptor; s 99.9 3E-22 1E-26 193.5 15.0 195 361-574 32-236 (239)
83 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.3E-28 214.1 7.8 235 338-579 24-299 (362)
84 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 190.4 18.9 180 361-555 15-194 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 3.7E-22 1.3E-26 192.8 14.4 198 336-551 31-237 (239)
86 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.5E-28 217.1 5.1 240 335-581 31-320 (386)
87 4glp_A Monocyte differentiatio 99.9 1.8E-21 6.2E-26 195.9 18.9 183 311-494 64-264 (310)
88 1h6u_A Internalin H; cell adhe 99.9 2.6E-21 8.8E-26 194.1 17.5 193 358-578 39-231 (308)
89 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.2E-27 207.9 8.7 240 311-558 22-302 (362)
90 2ast_B S-phase kinase-associat 99.9 2.9E-22 1E-26 204.7 8.9 253 312-584 48-313 (336)
91 2ast_B S-phase kinase-associat 99.9 9.4E-22 3.2E-26 200.9 12.0 223 263-491 48-282 (336)
92 4glp_A Monocyte differentiatio 99.9 2.4E-21 8.1E-26 195.0 14.1 226 336-577 64-307 (310)
93 1h6u_A Internalin H; cell adhe 99.9 1.6E-20 5.3E-25 188.4 20.0 191 336-554 41-231 (308)
94 2v9t_B SLIT homolog 2 protein 99.8 4.3E-21 1.5E-25 182.1 12.5 196 412-630 14-210 (220)
95 4ay9_X Follicle-stimulating ho 99.8 1.9E-20 6.6E-25 191.7 17.7 240 314-574 12-256 (350)
96 2ca6_A RAN GTPase-activating p 99.8 5.3E-22 1.8E-26 206.6 6.0 246 284-557 29-320 (386)
97 4ay9_X Follicle-stimulating ho 99.8 2E-20 6.9E-25 191.5 15.0 244 339-603 12-260 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-20 9.5E-25 176.5 11.8 195 412-629 14-210 (220)
99 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 171.5 14.4 158 410-585 29-186 (208)
100 2o6s_A Variable lymphocyte rec 99.8 2.4E-19 8.2E-24 169.0 16.7 131 361-492 29-159 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 2E-19 6.9E-24 170.6 13.3 154 388-555 14-167 (220)
102 3cvr_A Invasion plasmid antige 99.8 2.3E-19 7.9E-24 192.8 14.8 187 337-563 60-253 (571)
103 2xot_A Amphoterin-induced prot 99.8 2.5E-19 8.6E-24 184.1 13.2 181 387-581 20-206 (361)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 9.3E-19 3.2E-23 166.0 15.2 157 387-557 13-170 (220)
105 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.2E-23 165.2 16.8 156 411-581 21-176 (229)
106 2xot_A Amphoterin-induced prot 99.8 5.1E-19 1.8E-23 181.8 14.0 177 363-555 21-204 (361)
107 3cvr_A Invasion plasmid antige 99.8 2.7E-18 9.3E-23 184.5 18.2 186 312-538 60-252 (571)
108 1h6t_A Internalin B; cell adhe 99.8 5.1E-18 1.7E-22 168.5 18.8 169 385-578 46-214 (291)
109 1h6t_A Internalin B; cell adhe 99.8 8.5E-18 2.9E-22 166.8 16.9 170 359-554 45-214 (291)
110 3e6j_A Variable lymphocyte rec 99.8 1.9E-17 6.6E-22 158.0 17.8 155 388-557 22-176 (229)
111 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.7E-22 181.2 17.4 190 337-554 22-211 (605)
112 1m9s_A Internalin B; cell inva 99.7 5.5E-18 1.9E-22 184.3 12.9 197 312-537 22-218 (605)
113 1w8a_A SLIT protein; signaling 99.7 1.1E-17 3.8E-22 154.9 12.9 171 436-629 11-183 (192)
114 2wfh_A SLIT homolog 2 protein 99.7 8.3E-18 2.8E-22 155.6 11.3 171 436-630 13-184 (193)
115 4fdw_A Leucine rich hypothetic 99.7 2.4E-16 8.3E-21 162.9 20.9 267 284-576 110-382 (401)
116 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.3E-22 168.5 11.8 260 286-571 48-328 (329)
117 1xeu_A Internalin C; cellular 99.7 8.7E-18 3E-22 164.0 8.9 170 359-579 18-187 (263)
118 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 152.9 11.7 36 358-396 42-77 (197)
119 4ezg_A Putative uncharacterize 99.7 6.5E-17 2.2E-21 150.6 13.5 151 384-553 43-194 (197)
120 3sb4_A Hypothetical leucine ri 99.7 1.7E-17 5.6E-22 168.3 9.7 286 285-594 23-327 (329)
121 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.9E-22 160.6 10.0 169 336-531 19-187 (263)
122 1w8a_A SLIT protein; signaling 99.7 1E-16 3.5E-21 148.4 11.5 174 412-604 11-186 (192)
123 4fdw_A Leucine rich hypothetic 99.7 1E-15 3.5E-20 158.2 20.3 265 262-553 113-383 (401)
124 4fs7_A Uncharacterized protein 99.7 2.5E-15 8.7E-20 156.2 21.6 313 127-489 62-374 (394)
125 4fs7_A Uncharacterized protein 99.7 4.3E-15 1.5E-19 154.5 22.7 309 50-417 66-374 (394)
126 1dce_A Protein (RAB geranylger 99.7 2.4E-18 8.3E-23 186.1 -3.5 121 434-570 442-566 (567)
127 1dce_A Protein (RAB geranylger 99.6 1.2E-17 3.9E-22 180.8 -0.5 204 308-547 346-567 (567)
128 2wfh_A SLIT homolog 2 protein 99.6 1.4E-15 4.9E-20 140.5 13.5 128 412-554 13-140 (193)
129 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 138.5 10.5 132 433-577 24-160 (168)
130 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.7E-20 136.7 11.8 134 407-554 22-161 (168)
131 2o6r_A Variable lymphocyte rec 99.6 5.7E-15 2E-19 134.9 13.6 133 435-581 9-141 (177)
132 4b8c_D Glucose-repressible alc 99.6 1.8E-16 6.3E-21 177.0 4.1 218 336-577 173-404 (727)
133 4b8c_D Glucose-repressible alc 99.6 4.1E-16 1.4E-20 174.2 6.8 218 311-553 173-404 (727)
134 2je0_A Acidic leucine-rich nuc 99.6 2E-15 6.7E-20 133.7 9.4 65 508-572 80-148 (149)
135 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 9E-20 132.8 9.1 131 407-549 15-149 (149)
136 2o6r_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 127.5 14.7 128 363-494 10-137 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.6E-19 131.1 8.9 104 458-576 43-152 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.6E-14 2.6E-18 127.1 11.0 135 355-494 14-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 4E-16 1.4E-20 145.4 -5.5 132 428-577 43-185 (198)
140 4gt6_A Cell surface protein; l 99.5 4.8E-12 1.6E-16 131.5 24.5 113 376-492 256-368 (394)
141 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 121.7 11.4 110 459-582 11-120 (170)
142 3g39_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 121.8 10.5 109 483-605 11-119 (170)
143 4gt6_A Cell surface protein; l 99.4 9.8E-12 3.4E-16 129.1 21.4 294 257-575 58-368 (394)
144 1ds9_A Outer arm dynein; leuci 99.4 2.5E-15 8.4E-20 140.0 -5.5 138 429-582 14-158 (198)
145 2r9u_A Variable lymphocyte rec 99.4 9.2E-13 3.2E-17 119.3 11.5 108 460-581 15-122 (174)
146 2r9u_A Variable lymphocyte rec 99.4 9.2E-13 3.2E-17 119.3 10.7 108 484-605 15-122 (174)
147 2ifg_A High affinity nerve gro 99.3 3.2E-12 1.1E-16 130.5 10.9 71 510-581 50-120 (347)
148 4h09_A Hypothetical leucine ri 99.3 2.5E-10 8.5E-15 118.0 23.9 144 307-457 213-356 (379)
149 3un9_A NLR family member X1; l 99.3 4.8E-13 1.7E-17 136.8 0.2 111 336-446 72-196 (372)
150 3un9_A NLR family member X1; l 99.2 5.1E-13 1.7E-17 136.6 -1.2 66 132-198 179-252 (372)
151 2ifg_A High affinity nerve gro 99.2 2.9E-11 1E-15 123.4 9.5 97 507-605 23-120 (347)
152 4h09_A Hypothetical leucine ri 99.2 1.6E-09 5.4E-14 111.9 21.6 289 259-574 43-343 (379)
153 2ra8_A Uncharacterized protein 98.8 6.6E-09 2.2E-13 105.1 6.3 84 479-575 250-341 (362)
154 2ra8_A Uncharacterized protein 98.7 4.7E-09 1.6E-13 106.1 4.4 143 427-578 166-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 1.6E-07 5.4E-12 85.5 5.0 125 24-149 29-164 (185)
156 3e4g_A ATP synthase subunit S, 98.4 6E-08 2.1E-12 85.6 0.7 82 7-91 63-149 (176)
157 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.9E-12 86.5 2.4 43 428-470 31-78 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.5E-06 5E-11 83.1 5.7 104 10-116 148-259 (267)
159 3rw6_A Nuclear RNA export fact 98.1 4.7E-07 1.6E-11 86.5 1.2 42 511-554 191-234 (267)
160 3rfe_A Platelet glycoprotein I 98.0 3.7E-06 1.3E-10 71.0 4.3 101 519-628 11-113 (130)
161 3e4g_A ATP synthase subunit S, 98.0 3.4E-06 1.2E-10 74.4 3.1 84 337-420 62-150 (176)
162 3rfe_A Platelet glycoprotein I 97.5 0.00015 5.1E-09 61.0 6.2 56 497-554 13-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5.2E-09 65.2 4.2 122 25-148 35-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00014 4.7E-09 65.5 1.4 117 55-172 40-169 (197)
165 2lz0_A Uncharacterized protein 78.1 5.4 0.00019 31.0 6.4 45 125-170 9-53 (100)
166 2lz0_A Uncharacterized protein 74.4 5.1 0.00017 31.1 5.2 45 348-394 8-52 (100)
167 2k1k_A Ephrin type-A receptor 20.3 28 0.00097 21.3 0.5 9 636-644 14-22 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-68 Score=605.14 Aligned_cols=591 Identities=32% Similarity=0.448 Sum_probs=505.8
Q ss_pred CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchh--HHhhcCCCCcEEECCCCcCCcccCCCCCCC
Q 040699 2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQ--SIASIFPSLKNLSMSGCEVNGLVRGQGFPH 79 (689)
Q Consensus 2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 79 (689)
.++++|+.++++.+.+. .+++.|..+++|++|+|++|.+++.... .+.. +++|++|++++|.+.+..+...+.+
T Consensus 74 ~~L~~L~~l~~~~~~~~---~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHIN---GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLK 149 (768)
T ss_dssp TTCTTCCEEECTTSCEE---ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCC
T ss_pred hccCcccccCCcCCCcC---CCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhcc
Confidence 45677777777766543 3557789999999999999998865233 5666 9999999999999887766645588
Q ss_pred CCCCCeeeCCCCccccCCccchhh--hhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccc
Q 040699 80 FKSLEHLDMSSTRIALNTSFLQII--GESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCL 156 (689)
Q Consensus 80 l~~L~~L~L~~~~~~~~~~~~~~~--~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 156 (689)
+++|++|++++|.+ .+..+... ...+++|++|++++| ..+. . .+..+++|++|++++|.+++..|. +
T Consensus 150 l~~L~~L~Ls~n~l--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~---~~~~l~~L~~L~Ls~n~l~~~~~~-l 219 (768)
T 3rgz_A 150 LNSLEVLDLSANSI--SGANVVGWVLSDGCGELKHLAISGNKISGD----V---DVSRCVNLEFLDVSSNNFSTGIPF-L 219 (768)
T ss_dssp CTTCSEEECCSSCC--EEETHHHHHHTTCCTTCCEEECCSSEEESC----C---BCTTCTTCCEEECCSSCCCSCCCB-C
T ss_pred CCCCCEEECCCCcc--CCcCChhhhhhccCCCCCEEECCCCccccc----C---CcccCCcCCEEECcCCcCCCCCcc-c
Confidence 99999999999998 44444441 334899999999998 4333 2 347899999999999999977776 9
Q ss_pred cCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCc
Q 040699 157 ANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236 (689)
Q Consensus 157 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 236 (689)
+.+++|++|++++|.+++.++. .+..+++|++|++++|.+.+..+.. .+++|+.|++++|.+.+.++..... ..
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~--~~ 293 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSG--AC 293 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCT--TC
T ss_pred ccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHh--hc
Confidence 9999999999999999876666 7899999999999999988655432 7889999999999988766654221 12
Q ss_pred cccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCC-CcCE
Q 040699 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHK-RLGM 315 (689)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~ 315 (689)
..|++|++ +.+...+..|..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|++
T Consensus 294 ~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 47999999 777777788999999999999999999999889988778999999999999999888888887776 8999
Q ss_pred EEccCCcCcccCChhhhhc-CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC
Q 040699 316 LDISNNNFRGHIPLEIGDI-LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394 (689)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 394 (689)
|++++|.+++.+|..+... +++|+.|++++|.+++..|..+.++++|++|++++|++++.+|..+. .+++|++|++++
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~ 451 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWL 451 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCC
Confidence 9999999988777766432 57899999999999888899999999999999999999877776654 489999999999
Q ss_pred CcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCc
Q 040699 395 NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474 (689)
Q Consensus 395 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 474 (689)
|.+.+..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..|.++..+++|++|++++|++++..|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 99998888889999999999999999998889999999999999999999998999999999999999999999998999
Q ss_pred ccccCCCCCcEEecccccccc-----------------------------------------------------------
Q 040699 475 VEFCQLDLLQILDISDNNISG----------------------------------------------------------- 495 (689)
Q Consensus 475 ~~~~~l~~L~~L~l~~n~~~~----------------------------------------------------------- 495 (689)
..+..+++|++|++++|++++
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 999999999999999887641
Q ss_pred ------------------------ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699 496 ------------------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 496 ------------------------~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 551 (689)
.+|+++|++.|.+|..++++++|+.|+|++|++++.+|..++++++|++|||++|+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 27899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCCCCCCCCCC
Q 040699 552 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATM 615 (689)
Q Consensus 552 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~ 615 (689)
+++.+|..+..+++|+.|++++|+++|.+|+. .++.++....+.|||.+|+.|...|......
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~ 754 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC--
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCccC
Confidence 99999999999999999999999999999986 4788999999999999999988889765443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-62 Score=555.33 Aligned_cols=578 Identities=29% Similarity=0.398 Sum_probs=506.6
Q ss_pred CCCCEEeCCCCCCCCccc---cchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCC-CCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIAT---TAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRG-QGFPHF 80 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~---~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l 80 (689)
.+++.|||+++.+.+ . +++.+.++++|+.++++.+.+... .+.+.. +++|++|+|++|.+.+.++. ..++++
T Consensus 50 ~~v~~L~L~~~~l~g--~~~~l~~~l~~L~~L~~l~~~~~~~~~l-~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNV--GFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp TEEEEEECTTSCCCE--EHHHHHHHTTTCTTCCEEECTTSCEEEC-CCCCCC-CTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred CcEEEEECCCCCcCC--ccCccChhHhccCcccccCCcCCCcCCC-chhhcc-CCCCCEEECCCCcCCCcCCChHHHhCC
Confidence 357899999999987 5 788999999999999999876431 235555 89999999999999876653 268999
Q ss_pred CCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccc---cCCCCCCCEEeCCCCcCccCCCcccc
Q 040699 81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQG---LCSLMHLQELYMADNDLRGSLPWCLA 157 (689)
Q Consensus 81 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~ 157 (689)
++|++|++++|.+ .+..+..+...+++|++|++++|.... ..... +.++++|++|++++|.+++..+ +.
T Consensus 126 ~~L~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~ 197 (768)
T 3rgz_A 126 SGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISG----ANVVGWVLSDGCGELKHLAISGNKISGDVD--VS 197 (768)
T ss_dssp TTCCEEECCSSEE--ECCSSCCSCCCCTTCSEEECCSSCCEE----ETHHHHHHTTCCTTCCEEECCSSEEESCCB--CT
T ss_pred CCCCEEECcCCcc--CCcCCHHHhccCCCCCEEECCCCccCC----cCChhhhhhccCCCCCEEECCCCcccccCC--cc
Confidence 9999999999998 566666554459999999999994332 22223 7899999999999999986554 48
Q ss_pred CCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCcc
Q 040699 158 NMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 237 (689)
Q Consensus 158 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 237 (689)
.+++|++|++++|.+++.++. +..+++|++|++++|.+++..+ ..+.++++|+.|++++|.+.+..+.. ...
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~ 269 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-----PLK 269 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-----CCT
T ss_pred cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-----ccC
Confidence 899999999999999866665 8999999999999999885443 56889999999999999988765542 445
Q ss_pred ccceEeecccCCCCCCCCccccCC-CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCC-CCCCCCcCE
Q 040699 238 QLSRLSLSSSYGDGFIFPKFLYHQ-HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLP-IHSHKRLGM 315 (689)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~ 315 (689)
+|++|++ ..+...+.+|..+... ++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..+.. +..+++|++
T Consensus 270 ~L~~L~L-~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 270 SLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TCCEEEC-CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCEEEC-cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 8999999 7777777888888765 99999999999999888887 589999999999999998766654 889999999
Q ss_pred EEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccC--CCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN--MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS 393 (689)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 393 (689)
|++++|.+++.+|..+....++|+.|++++|.+.+..|..+.. +++|++|++++|.+++.+|..+. .+++|++|+++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls 426 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLS 426 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECC
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECc
Confidence 9999999998899888774459999999999998888887776 88999999999999977777665 49999999999
Q ss_pred CCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCC
Q 040699 394 NNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPI 473 (689)
Q Consensus 394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 473 (689)
+|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.++..+++|++|++++|++++..
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEeccccccccc-------------cccCCCcccCCCchhh----------------------------
Q 040699 474 PVEFCQLDLLQILDISDNNISGR-------------LDLSCNKLIGPIPPKI---------------------------- 512 (689)
Q Consensus 474 ~~~~~~l~~L~~L~l~~n~~~~~-------------l~ls~n~l~~~~~~~~---------------------------- 512 (689)
|..+..+++|++|++++|.+++. +++++|++.|.+|..+
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 99999999999999999999743 8999999988777643
Q ss_pred ------------------------------------------ccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699 513 ------------------------------------------GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550 (689)
Q Consensus 513 ------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 550 (689)
..+++|+.|++++|++++.+|..++++++|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 33578999999999999999999999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
++++.+|..+..+++|+.||+++|++++.+|+.+..+..++.+++.+|+.....|
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999999999999999999999999999999999999999998765444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-59 Score=526.58 Aligned_cols=606 Identities=20% Similarity=0.203 Sum_probs=408.2
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 84 (689)
+++++|+|++|.+++ ..+..|.++++|++|++++|.++......+.. +++|++|++++|.+++. +...|+++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQL-SDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCcc-ChhhhccCCCCC
Confidence 467777777777776 34455777777777777777777653334555 77777777777777643 333577777777
Q ss_pred eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCcccc--CCCCC
Q 040699 85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLA--NMTSL 162 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L 162 (689)
+|++++|.+ .+..+..+.. +++|++|++++|.... .+...+.++++|++|++++|.+++..+..+. .+++|
T Consensus 101 ~L~L~~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 101 ELHLMSNSI--QKIKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp EEECCSSCC--CCCCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred EEECCCCcc--CccChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 777777776 2222233333 7777777777773322 3333566777777777777777765555443 45677
Q ss_pred cEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCc--ccccCCCCcceeeccCCcccccccccccCccCccccc
Q 040699 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISL--EPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS 240 (689)
Q Consensus 163 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 240 (689)
++|++++|.++ .++...+..+++|+.|++.++.+...... ......++|+.|++++|.+.+..+.... .....+|+
T Consensus 174 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~ 251 (680)
T 1ziw_A 174 KKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLT 251 (680)
T ss_dssp SEEECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCC
T ss_pred cEEECCCCccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCC
Confidence 77777777776 34444677777777777777665421110 0011346778888888877665443321 11112478
Q ss_pred eEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCC---------CCCCCCCCCC
Q 040699 241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG---------PFRLPIHSHK 311 (689)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~ 311 (689)
+|++ +.+...+..+..+..+++|+.|++++|.+.+..|.. +..+++|+.|+++++...+ +....+..++
T Consensus 252 ~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 252 MLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp EEEC-TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred EEEC-CCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 8887 666666666677777888888888888877665554 4677888888887654332 1223567778
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCC--ccccccccCC--CCCcEEeccCCcccccchhhhhcCCCCC
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD--GSIPSSFGNM--NFLRILDLSNNQLTGEIPEHLAVGCVNL 387 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L 387 (689)
+|++|++++|.+.+ ++...+..+++|+.|++++|.+. ......|..+ ++|+.|++++|++. .++...+..+++|
T Consensus 330 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L 407 (680)
T 1ziw_A 330 CLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHL 407 (680)
T ss_dssp TCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred CCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCC
Confidence 88888888888874 44444555778888888887643 2222334332 57888888888887 4444555668888
Q ss_pred CEEEccCCcCCcc-CcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC--CcCChhhcCCCCCcEEEc
Q 040699 388 ESLVLSNNSLKGH-MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS--GKIPRWLGDLTRLQYIIM 464 (689)
Q Consensus 388 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~l 464 (689)
+.|++++|.+.+. ....+.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|..+++|++|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 8888888888653 3367778888888888888887777778888888888888888775 466778888888888888
Q ss_pred CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699 465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES 544 (689)
Q Consensus 465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 544 (689)
++|++++..+..|..+++|++|++++|.+++. ....+.+..+..+.++++|++|++++|+++.+.+..|.++++|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARL---WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG---GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCcccc---chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 88888877777788888888888888887631 111111112234788999999999999999766678999999999
Q ss_pred EeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc-cccccCcccccCCcCCCCCCC-C---------------
Q 040699 545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA-QFATFNENSYEGNTFLCGLPL-P--------------- 607 (689)
Q Consensus 545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~~~~~n~~~c~~~~-~--------------- 607 (689)
|++++|++++..+..|..+++|+.|++++|.+++..|..+. .++.++.+++.+|||.|+|+. .
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~ 644 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC------
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCccccc
Confidence 99999999988888888999999999999999988777666 688899999999999999974 2
Q ss_pred -----CCCCCCCCCcccCCCCCCCCccc
Q 040699 608 -----ICRSPATMSEASIGNERDDNLID 630 (689)
Q Consensus 608 -----~c~~~~~~~~~~~~~~~~~~~~~ 630 (689)
.|..|+..+|.++.+++++.+++
T Consensus 645 ~~~~~~C~~p~~~~g~~l~~~~~~~~~~ 672 (680)
T 1ziw_A 645 LSSHYLCNTPPHYHGFPVRLFDTSSCKD 672 (680)
T ss_dssp ----------------------------
T ss_pred ccCCcEECCchHHCCCcccccChhhcCC
Confidence 47778777787777777766654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-55 Score=497.34 Aligned_cols=578 Identities=20% Similarity=0.247 Sum_probs=464.0
Q ss_pred CCCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCC
Q 040699 1 MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHF 80 (689)
Q Consensus 1 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 80 (689)
|+++++|++|||++|.+++ ..+..|.++++|++|+|++|.++.....++.. +++|++|++++|.+.+..+ ..|+++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l 120 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKN-NPFVKQ 120 (680)
T ss_dssp GGGGTTCSEEECCSSCCCC--CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCS-CTTTTC
T ss_pred HhCCCcCcEEECCCCccCc--cCHHHHhcccCcCEEECCCCccCccChhhhcc-CCCCCEEECCCCccCccCh-hHcccc
Confidence 4578999999999999998 56788999999999999999998753335666 9999999999999985543 479999
Q ss_pred CCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCcccc--CCCCCCCEEeCCCCcCccCCCccccC
Q 040699 81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGL--CSLMHLQELYMADNDLRGSLPWCLAN 158 (689)
Q Consensus 81 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~ 158 (689)
++|++|++++|.+ .+..+..+.. +++|++|++++|.... +++..+ ..+++|++|++++|.+++..|..|..
T Consensus 121 ~~L~~L~Ls~n~l--~~~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 121 KNLITLDLSHNGL--SSTKLGTQVQ-LENLQELLLSNNKIQA----LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp TTCCEEECCSSCC--SCCCCCSSSC-CTTCCEEECCSSCCCC----BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred CCCCEEECCCCcc--cccCchhhcc-cccCCEEEccCCcccc----cCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 9999999999998 4444444444 9999999999984443 443343 36789999999999999888999999
Q ss_pred CCCCcEEEccceeeeeecCccc--ccCCCCCCEEeccCCcceeecCcccccCCC--CcceeeccCCcccccccccccCcc
Q 040699 159 MTSLRILYVSYNQLTGSISSSP--LVHLTSIEKLYLSNNHFRIPISLEPLFNHS--RLKIFYADNNELNAEITQSHSLTA 234 (689)
Q Consensus 159 l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~ 234 (689)
+++|+.|+++++.+.+...... ....++|+.|++++|.+.+..+ ..+..++ +|+.|++++|.+.+..+... .
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~---~ 269 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSF---A 269 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-TTTGGGGGSCCCEEECTTSCCCEECTTTT---T
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-hHhhccCcCCCCEEECCCCCcCccCcccc---c
Confidence 9999999998887753221100 0134789999999998875433 4555554 49999999998876554332 2
Q ss_pred CccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCC-----CC---hHHHhcCCCCcEEEeeCCCCCCCCCCC
Q 040699 235 PNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGE-----FP---TWLLENNTKLRQLSLVNDSLAGPFRLP 306 (689)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-----~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~ 306 (689)
...+|+.|++ ..+...+..|..+..+++|+.++++++...+. +| ...+..+++|++|++++|.+.+..+..
T Consensus 270 ~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 270 WLPQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TCTTCCEEEC-CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred CcccccEeeC-CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 2347889998 66777777888899999999999998755432 22 223678999999999999999988888
Q ss_pred CCCCCCcCEEEccCCcCcc-cCChhhhhc--CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcC
Q 040699 307 IHSHKRLGMLDISNNNFRG-HIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG 383 (689)
Q Consensus 307 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 383 (689)
+.++++|++|++++|.+.. .++...+.. .++|+.|++++|.+.+..|.+|..+++|+.|++++|.+.+.++...+.+
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 9999999999999997542 333333322 2589999999999999889999999999999999999988888888888
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccc--ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcE
Q 040699 384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFI--GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQY 461 (689)
Q Consensus 384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 461 (689)
+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+++..+.+|.++++|++
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 999999999999999988999999999999999999886 567888999999999999999999888888999999999
Q ss_pred EEcCCCccccCCc--------ccccCCCCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCcccccCC
Q 040699 462 IIMPNNHLEGPIP--------VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSI 532 (689)
Q Consensus 462 L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 532 (689)
|++++|++++..+ ..|.++++|++|++++|.++ .+| ..|.++++|+.|++++|++++..
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD------------EIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC------------CCCHHHcccccCcceeECCCCCCCcCC
Confidence 9999999986422 23788999999999999887 344 56899999999999999999888
Q ss_pred cccccCCCCCCEEeCcCCcCCCCCchhcc-CCCCCCEEeccCCcCcCCCC--CccccccccCccccc--CCcCCCCCCC
Q 040699 533 PSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLEVFSVAYNNLSGEIP--EWEAQFATFNENSYE--GNTFLCGLPL 606 (689)
Q Consensus 533 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~--~~~~~~~~~~~~~~~--~n~~~c~~~~ 606 (689)
+..|.++++|++|++++|++++..|..+. .+++|+.+++++|++.|.++ .|+..+.......+. .....|..|.
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~ 655 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCch
Confidence 88899999999999999999998888887 78999999999999999987 455554333322222 2355787664
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-55 Score=486.96 Aligned_cols=563 Identities=19% Similarity=0.198 Sum_probs=401.2
Q ss_pred CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699 8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD 87 (689)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 87 (689)
+.+|.++..++. +|..+. +++++|++++|.++......+.. +++|++|++++|.+.+..+ ..|.++++|++|+
T Consensus 15 ~~~~c~~~~l~~---iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 15 KTYNCENLGLNE---IPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLV 87 (606)
T ss_dssp TEEECTTSCCSS---CCTTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECT-TTTTTCTTCCEEE
T ss_pred ceEECCCCCccc---CcCCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeCh-hhccCccccCeee
Confidence 467777776665 565554 47899999999888763335666 8899999999998876544 4788899999999
Q ss_pred CCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEc
Q 040699 88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167 (689)
Q Consensus 88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 167 (689)
+++|.+ .+..+..+.. +++|++|++++|.... +.+..++++++|++|++++|.+++..+..+..+++|++|++
T Consensus 88 Ls~n~l--~~~~~~~~~~-l~~L~~L~L~~n~i~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 88 LTANPL--IFMAETALSG-PKALKHLFFIQTGISS----IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp CTTCCC--SEECTTTTSS-CTTCCEEECTTSCCSC----GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred CCCCcc--cccChhhhcc-cccccEeeccccCccc----CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 999988 3444444444 8899999999885444 54446888999999999999988755455555889999999
Q ss_pred cceeeeeecCcccccCCCCCC--EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeec
Q 040699 168 SYNQLTGSISSSPLVHLTSIE--KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLS 245 (689)
Q Consensus 168 ~~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~ 245 (689)
++|.++ .++...+..+++|+ .|++++|.++...+ . .....+|+.+++++|......... .....+..+.+.
T Consensus 161 ~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~l~~l~~~ 233 (606)
T 3t6q_A 161 QNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEP-G-AFDSAVFQSLNFGGTQNLLVIFKG----LKNSTIQSLWLG 233 (606)
T ss_dssp CSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECT-T-TTTTCEEEEEECTTCSCHHHHHHH----TTTCEEEEEECC
T ss_pred ccCccc-ccChhhhhhhcccceeEEecCCCccCccCh-h-HhhhccccccccCCchhHHHHhhh----ccccchhheech
Confidence 999888 45444788888888 88899988875332 2 234467888888877522111110 111122223220
Q ss_pred ccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCC--CCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcC
Q 040699 246 SSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF 323 (689)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (689)
.+..+... .++...+..+. +++.+++++|.+.++.+..+..+++|++|++++|.+
T Consensus 234 --------------~~~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 234 --------------TFEDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp --------------CCTTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred --------------hhcccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 11111111 11111222222 677788888887777777777788888888888887
Q ss_pred cccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccC--
Q 040699 324 RGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM-- 401 (689)
Q Consensus 324 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 401 (689)
+ .+|..+.. +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..
T Consensus 291 ~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 291 S-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp S-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred C-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence 7 67765543 6788888888888877777777888888888888887777777776667888888888888877665
Q ss_pred cccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCCcccccCC
Q 040699 402 FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQL 480 (689)
Q Consensus 402 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 480 (689)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 5567778888888888888777777778888888888888887775544 347778888888888888877777778888
Q ss_pred CCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhc
Q 040699 481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 560 (689)
Q Consensus 481 ~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 560 (689)
++|++|++++|.+++. .-..+..+..+++|++|++++|++++..|..|+++++|++|++++|++++..|+.+
T Consensus 449 ~~L~~L~L~~n~l~~~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKG--------NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp TTCCEEECTTCBCGGG--------EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CCCCEEECCCCCCCcc--------ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 8888888888876521 00123457777888888888888877777778888888888888888887777788
Q ss_pred cCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC-------------------CCCCCCCCCcccCC
Q 040699 561 VELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP-------------------ICRSPATMSEASIG 621 (689)
Q Consensus 561 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-------------------~c~~~~~~~~~~~~ 621 (689)
..+++| .|++++|++++..|+.+..+..++.+++.+||+.|+|+.. .|.+|+..+|.++.
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 599 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGG
T ss_pred Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeee
Confidence 888888 8888888888777777777777788888888888877521 58888888877766
Q ss_pred CCCC
Q 040699 622 NERD 625 (689)
Q Consensus 622 ~~~~ 625 (689)
+++.
T Consensus 600 ~~~~ 603 (606)
T 3t6q_A 600 DVTL 603 (606)
T ss_dssp GCCC
T ss_pred eeec
Confidence 6543
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-54 Score=497.40 Aligned_cols=567 Identities=20% Similarity=0.215 Sum_probs=392.0
Q ss_pred CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699 8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD 87 (689)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 87 (689)
+..|.++++++. +|. -.++|++|+|++|.++......+.. +++|++|++++|...+.++...|.++++|++|+
T Consensus 7 ~~~dcs~~~L~~---vP~---lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQ---VPQ---VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSC---CCS---SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCCC---CCC---CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 356677777766 454 3477888888888887653345555 888888888888666566555788888888888
Q ss_pred CCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCc-cccCCCCCCCEEeCCCCcCccCCC-ccccCCCCCcE
Q 040699 88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILD-QGLCSLMHLQELYMADNDLRGSLP-WCLANMTSLRI 164 (689)
Q Consensus 88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 164 (689)
+++|.+ .+..+..+.. +++|++|+|++| ..+. ++. ..+.++++|++|+|++|.+++..+ ..|+++++|++
T Consensus 80 Ls~N~l--~~~~p~~~~~-l~~L~~L~Ls~n~l~~~----~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 80 LGSSKI--YFLHPDAFQG-LFHLFELRLYFCGLSDA----VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp CTTCCC--CEECTTSSCS-CSSCCCEECTTCCCSSC----CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCcC--cccCHhHccC-CcccCEeeCcCCCCCcc----cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 888887 3333444444 888888888887 3332 222 237788888888888888876544 56888888888
Q ss_pred EEccceeeeeecCcccccCC--CCCCEEeccCCcceeecCcccccCCC------CcceeeccCCcccccccccccCccCc
Q 040699 165 LYVSYNQLTGSISSSPLVHL--TSIEKLYLSNNHFRIPISLEPLFNHS------RLKIFYADNNELNAEITQSHSLTAPN 236 (689)
Q Consensus 165 L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~~~~~ 236 (689)
|++++|.+++..+. .+..+ ++|+.|++++|.+....+. .+..+. .|+.|++++|.+.+..+.........
T Consensus 153 L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 153 IDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EECCCCcCCeeCHH-HcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 88888888744333 66666 7888888888887754332 222222 37888888887766554443333333
Q ss_pred cccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhc--CCCCcEEEeeCCCCCCCCCCCCCCCCCcC
Q 040699 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLAGPFRLPIHSHKRLG 314 (689)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (689)
..+..+.+. ...... +...+.+.+..+. .+.. .++++.|++++|.+.+..+..+..+++|+
T Consensus 231 ~~l~~L~l~-~~~~~~---------------~~~~~~l~~~~~~-~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 293 (844)
T 3j0a_A 231 SQAFSLILA-HHIMGA---------------GFGFHNIKDPDQN-TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293 (844)
T ss_dssp CCBSEEECC-SSCCBC---------------SSSCSSSTTGGGT-TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCC
T ss_pred ccccceecc-cccccc---------------cccccccCCCChh-hhhccccCCccEEECCCCcccccChhhhhcCCCCC
Confidence 345555541 111000 0011111111111 1222 36788888888888877777788888888
Q ss_pred EEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC
Q 040699 315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394 (689)
Q Consensus 315 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 394 (689)
.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|++|++++
T Consensus 294 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 294 VLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp EEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEET
T ss_pred EEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCC
Confidence 88888888874434 34455788888888888888777788888888888888888886 66666677788888888888
Q ss_pred CcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCC
Q 040699 395 NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPI 473 (689)
Q Consensus 395 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 473 (689)
|.+.+.. .+++|+.|++++|++... |. ...+++.|++++|.+.+... ..+..+++|++|++++|++++..
T Consensus 372 N~l~~i~-----~~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 372 NALTTIH-----FIPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CCSCCCS-----SCCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCCccc-----CCCCcchhccCCCCcccc-cc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence 8877533 377888888888887633 33 24578888888888875322 34567888888888888887544
Q ss_pred cc-cccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699 474 PV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552 (689)
Q Consensus 474 ~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 552 (689)
+. .+..+++|++|++++|.++.. .-.+..+..|.++++|++|+|++|++++.+|..|.++++|++|+|++|++
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~l~~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENMLQLA------WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCCCSSS------CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred cccccccCCccccccCCCCccccc------cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 33 355678888888888877521 00124456677888888888888888888888888888888888888888
Q ss_pred CCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC--------------------CCCCC
Q 040699 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP--------------------ICRSP 612 (689)
Q Consensus 553 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~--------------------~c~~~ 612 (689)
++..|..+. ++|+.|++++|++++..|+. +..+..+++.+||+.|+|+.. .|.+|
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCc
Confidence 877666655 78888888888888877764 346777788888888887642 69999
Q ss_pred CCCCcccCCCCCCCCcc
Q 040699 613 ATMSEASIGNERDDNLI 629 (689)
Q Consensus 613 ~~~~~~~~~~~~~~~~~ 629 (689)
....+.++.+.....|.
T Consensus 592 ~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 592 DSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp SSSCSCCTTTCCCCCC-
T ss_pred hhhCCCccccCccccCC
Confidence 88888887777665543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-53 Score=470.25 Aligned_cols=573 Identities=19% Similarity=0.201 Sum_probs=419.3
Q ss_pred CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCee
Q 040699 7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL 86 (689)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 86 (689)
-++++.+++.++. +|..+. +++++|++++|.++......+.. +++|++|++++|.+++..+ ..|.++++|++|
T Consensus 13 ~~~~~c~~~~l~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L 85 (606)
T 3vq2_A 13 NITYQCMDQKLSK---VPDDIP--SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIED-KAWHGLHHLSNL 85 (606)
T ss_dssp TTEEECTTSCCSS---CCTTSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred CCceEccCCCccc---CCCCCC--CCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCH-HHhhchhhcCEe
Confidence 3578888888776 455444 78999999999988763336666 8999999999998886544 478889999999
Q ss_pred eCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEE
Q 040699 87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRIL 165 (689)
Q Consensus 87 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 165 (689)
++++|.+ .+..+..+.. +++|++|++++|.... +++..++++++|++|++++|.+++ .+|..|+++++|++|
T Consensus 86 ~Ls~n~l--~~~~p~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 86 ILTGNPI--QSFSPGSFSG-LTSLENLVAVETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp ECTTCCC--CCCCTTSSTT-CTTCCEEECTTSCCCC----SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred ECCCCcc--cccChhhcCC-cccCCEEEccCCcccc----ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 9999988 4444555555 8999999999985444 554478899999999999999886 468889999999999
Q ss_pred EccceeeeeecCcccccCCCCCC----EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccce
Q 040699 166 YVSYNQLTGSISSSPLVHLTSIE----KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241 (689)
Q Consensus 166 ~L~~n~l~~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 241 (689)
++++|.+++ ++...+..+++|+ +|++++|.++. ++...+.. .+|+.|++++|.+.+....... .....++.
T Consensus 159 ~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~ 233 (606)
T 3vq2_A 159 DLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG-IKLHELTLRGNFNSSNIMKTCL--QNLAGLHV 233 (606)
T ss_dssp ECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTT-CEEEEEEEESCCSCHHHHHHHH--HTTTTCEE
T ss_pred EccCCccee-cChhhhhhhhccccccceeeccCCCcce-eCcccccC-ceeeeeeccCCccchhHHHHHh--cccccccc
Confidence 999999884 4444666655544 89999998873 33333433 3899999999877542221111 11113333
Q ss_pred EeecccC-----CCCCCCCccccCCC--CCCEEEc-cCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCc
Q 040699 242 LSLSSSY-----GDGFIFPKFLYHQH--DLEYADL-SHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313 (689)
Q Consensus 242 L~l~~~~-----~~~~~~~~~l~~~~--~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 313 (689)
+.+.... ......+..+..+. .++.+++ ..+.+.+..|. +..+++|+.|+++++.+.... .+..+++|
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L 309 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKW 309 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCC
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccC
Confidence 3331100 01111111222222 4556666 66777777776 688999999999999987654 78889999
Q ss_pred CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccc-hhhhhcCCCCCCEEEc
Q 040699 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEI-PEHLAVGCVNLESLVL 392 (689)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l 392 (689)
++|++++|.+. .+|. + .+++|+.|++++|...+.. .+..+++|++|++++|.+++.. ....+..+++|++|++
T Consensus 310 ~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 310 QSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp SEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred CEEEcccccCc-cccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 99999999994 8884 3 5899999999999655333 6778999999999999998432 1334456999999999
Q ss_pred cCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG 471 (689)
Q Consensus 393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 471 (689)
++|.+.+.. ..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|++.+
T Consensus 384 ~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 999988755 778889999999999999988777 688899999999999999998888999999999999999999987
Q ss_pred -CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699 472 -PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550 (689)
Q Consensus 472 -~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 550 (689)
..|..+..+++|++|++++|.+++ ..|..+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQ-----------ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred cchHHhhccCCCCCEEECCCCcCCc-----------cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 478889999999999999998763 66788999999999999999999888999999999999999999
Q ss_pred cCCCCCchhccCCC-CCCEEeccCCcCcCCCCC-ccccccccCcccccCCcCCC-CCCCCCCCCCCCCCcccCCCCCCCC
Q 040699 551 KLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLC-GLPLPICRSPATMSEASIGNERDDN 627 (689)
Q Consensus 551 ~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c-~~~~~~c~~~~~~~~~~~~~~~~~~ 627 (689)
+++ .+|..+..++ +|+.+++++|++.|.++. |+..+ +. .++... +.....|..|...++.++.+++...
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~--l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW--VK-----EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT--TT-----TSSSSBSSGGGCCCC-----------------
T ss_pred cCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHH--HH-----cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence 998 5676688886 699999999999998874 22222 11 111111 1122378888888888888777654
Q ss_pred c
Q 040699 628 L 628 (689)
Q Consensus 628 ~ 628 (689)
|
T Consensus 604 c 604 (606)
T 3vq2_A 604 C 604 (606)
T ss_dssp -
T ss_pred C
Confidence 3
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-52 Score=464.69 Aligned_cols=524 Identities=19% Similarity=0.143 Sum_probs=422.1
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 84 (689)
+++++|||++|.+++ ..+..|.++++|++|+|++|.+.......+.. +++|++|++++|.+.+..+ ..|+++++|+
T Consensus 33 ~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 108 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAE-TALSGPKALK 108 (606)
T ss_dssp TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECT-TTTSSCTTCC
T ss_pred CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccCh-hhhccccccc
Confidence 479999999999998 55778999999999999999998763446666 9999999999999986655 4799999999
Q ss_pred eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCc-
Q 040699 85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR- 163 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~- 163 (689)
+|++++|.+ .+..+..+. .+++|++|++++|.... ++...+..+++|++|++++|.+++..+..|+.+++|+
T Consensus 109 ~L~L~~n~i--~~l~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 109 HLFFIQTGI--SSIDFIPLH-NQKTLESLYLGSNHISS----IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp EEECTTSCC--SCGGGSCCT-TCTTCCEEECCSSCCCC----CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred EeeccccCc--ccCCcchhc-cCCcccEEECCCCcccc----cCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 999999998 332233344 49999999999994443 3323566699999999999999988888999999999
Q ss_pred -EEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceE
Q 040699 164 -ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL 242 (689)
Q Consensus 164 -~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 242 (689)
.|++++|.+++ ++...+ ...+|+.|++++|.... ..+..+.+++...+....+... ...
T Consensus 182 l~L~l~~n~l~~-~~~~~~-~~~~L~~L~l~~~~~~~----~~~~~l~~~~l~~l~~~~~~~~--------------~~~ 241 (606)
T 3t6q_A 182 LSLNLNGNDIAG-IEPGAF-DSAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLWLGTFEDM--------------DDE 241 (606)
T ss_dssp EEEECTTCCCCE-ECTTTT-TTCEEEEEECTTCSCHH----HHHHHTTTCEEEEEECCCCTTS--------------CCC
T ss_pred eEEecCCCccCc-cChhHh-hhccccccccCCchhHH----HHhhhccccchhheechhhccc--------------ccc
Confidence 99999999985 444344 44689999999986221 1233333333333322221110 000
Q ss_pred eecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCc
Q 040699 243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN 322 (689)
Q Consensus 243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 322 (689)
. ........+.. .+++.+++++|.+.+..+ ..+..+++|++|++++|.++. .|..+..+++|++|++++|.
T Consensus 242 ~------i~~~~~~~l~~-~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 242 D------ISPAVFEGLCE-MSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp C------CCGGGGGGGGG-SEEEEEECTTCCCSSCCT-TTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCC
T ss_pred c------cChhHhchhhc-CceeEEEeecCccCccCH-HHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCC
Confidence 0 00111111111 268889999998885444 446889999999999999885 56678889999999999999
Q ss_pred CcccCChhhhhcCCCceEEEccCCcCCcccc-ccccCCCCCcEEeccCCcccccch--hhhhcCCCCCCEEEccCCcCCc
Q 040699 323 FRGHIPLEIGDILPSLHVFNISMNALDGSIP-SSFGNMNFLRILDLSNNQLTGEIP--EHLAVGCVNLESLVLSNNSLKG 399 (689)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~ 399 (689)
+.+..| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. .++ ...+..+++|++|++++|.+.+
T Consensus 313 l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 313 FENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred cCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCc
Confidence 984444 444558999999999999875544 45899999999999999998 443 3445669999999999999999
Q ss_pred cCcccccCCCCccEEeccCCcccccccc-cccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc---CCcc
Q 040699 400 HMFSRNFNLANLMSLQLEGNHFIGEISQ-SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG---PIPV 475 (689)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~---~~~~ 475 (689)
..+..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+.++++|++|++++|++.+ ..+.
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence 8889999999999999999999876554 48899999999999999998889999999999999999999986 2346
Q ss_pred cccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCC
Q 040699 476 EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555 (689)
Q Consensus 476 ~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 555 (689)
.+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+.+++.| +|++++|++++.
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSS-----------IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred hhccCCCccEEECCCCccCc-----------cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 78999999999999998873 667889999999999999999999999999999999 999999999999
Q ss_pred CchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 556 IPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 556 ~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
.|..+..+++|+.+++++|++.|.++.
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999998873
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7e-52 Score=460.36 Aligned_cols=517 Identities=20% Similarity=0.189 Sum_probs=425.6
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 84 (689)
+++++|+|++|.+++ ..+..|.++++|++|++++|.++......+.. +++|++|++++|.+++..+ ..|+++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSP-GSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCT-TSSTTCTTCC
T ss_pred CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccCh-hhcCCcccCC
Confidence 679999999999988 45668999999999999999998763335666 9999999999999986655 4799999999
Q ss_pred eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCc-
Q 040699 85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR- 163 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~- 163 (689)
+|++++|.+ .+..+..+.. +++|++|++++|.... ..+|. .++++++|++|++++|.+++..+..|+.+++|+
T Consensus 108 ~L~L~~n~l--~~~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 108 NLVAVETKL--ASLESFPIGQ-LITLKKLNVAHNFIHS--CKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp EEECTTSCC--CCSSSSCCTT-CTTCCEEECCSSCCCC--CCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred EEEccCCcc--ccccccccCC-CCCCCEEeCCCCcccc--eechH-hHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 999999998 3333344444 9999999999994321 01554 899999999999999999988888888777665
Q ss_pred ---EEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccccc-----ccccCccC
Q 040699 164 ---ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT-----QSHSLTAP 235 (689)
Q Consensus 164 ---~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~ 235 (689)
+|++++|.++ .++...+... +|+.|++++|.+.+......+.+++.++.+.+..+.+..... ........
T Consensus 182 ~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 182 VNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 8999999998 6676555555 899999999988754445567888889888876554432111 11111122
Q ss_pred ccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCE
Q 040699 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM 315 (689)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 315 (689)
...++.+.+.......+..|. +..+++|+.++++++.+. .+| . +..+++|++|++++|.+. ..+ .+ .+++|++
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~-l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~ 332 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D-VPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKS 332 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C-CCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCE
T ss_pred hccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h-ccccccCCEEEcccccCc-ccc-cC-CCCccce
Confidence 336677777555566666666 788999999999999986 456 2 578899999999999994 455 45 8999999
Q ss_pred EEccCCcCcccCChhhhhcCCCceEEEccCCcCCcc--ccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS--IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS 393 (689)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 393 (689)
|++++|...+.++ +..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+. .+| ..+.++++|++|+++
T Consensus 333 L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 333 LTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQ 407 (606)
T ss_dssp EEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECT
T ss_pred eeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECC
Confidence 9999996554442 23588999999999998865 3788999999999999999998 677 445569999999999
Q ss_pred CCcCCccCc-ccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCC-cCChhhcCCCCCcEEEcCCCcccc
Q 040699 394 NNSLKGHMF-SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNNHLEG 471 (689)
Q Consensus 394 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~ 471 (689)
+|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 999998877 678899999999999999999899999999999999999999987 478899999999999999999999
Q ss_pred CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC-CCCEEeCcCC
Q 040699 472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK-HVESLDLSNN 550 (689)
Q Consensus 472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N 550 (689)
..|..|..+++|++|++++|++++ ..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLF-----------LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC-----------EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred cChhhhcccccCCEEECCCCcCCC-----------cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 999999999999999999998873 66889999999999999999999 5666688886 6999999999
Q ss_pred cCCCCCc
Q 040699 551 KLNGKIP 557 (689)
Q Consensus 551 ~l~~~~~ 557 (689)
++....+
T Consensus 556 ~~~c~c~ 562 (606)
T 3vq2_A 556 SVACICE 562 (606)
T ss_dssp CCCCSST
T ss_pred CcccCCc
Confidence 9986544
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=465.02 Aligned_cols=522 Identities=20% Similarity=0.171 Sum_probs=416.8
Q ss_pred CCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchh-HHhhcCCCCcEEECCCCcCCcccCCCCCCCCCC
Q 040699 4 FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQ-SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKS 82 (689)
Q Consensus 4 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 82 (689)
.+++++|||++|.+++ ..+..|.++++|++|+|++|.......+ .+.. +++|++|+|++|.+.+..+. .|.++++
T Consensus 23 p~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYFLHPD-AFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred CCCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCcccCHh-HccCCcc
Confidence 4789999999999998 5678899999999999999966544223 4555 99999999999999866554 8999999
Q ss_pred CCeeeCCCCccccCCccchh-hhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCC--
Q 040699 83 LEHLDMSSTRIALNTSFLQI-IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM-- 159 (689)
Q Consensus 83 L~~L~L~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-- 159 (689)
|++|++++|.+ .+..+.. ....+++|++|+|++|..... .+...++++++|++|++++|.+++..+..+..+
T Consensus 99 L~~L~Ls~n~l--~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 99 LFELRLYFCGL--SDAVLKDGYFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CCCEECTTCCC--SSCCSTTCCCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCEeeCcCCCC--CcccccCccccccCCCCEEECCCCccccc---ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999998 4544443 233499999999999944320 232478999999999999999998889998887
Q ss_pred CCCcEEEccceeeeeecCcccccCCCC------CCEEeccCCcceeecCccc--ccCCCCcceeeccCCccccccccccc
Q 040699 160 TSLRILYVSYNQLTGSISSSPLVHLTS------IEKLYLSNNHFRIPISLEP--LFNHSRLKIFYADNNELNAEITQSHS 231 (689)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~ 231 (689)
++|+.|++++|.+.+..+. .+..+.+ |+.|++++|.+....+... ......++.+.+..+.......
T Consensus 174 ~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~---- 248 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG---- 248 (844)
T ss_dssp CSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS----
T ss_pred CccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc----
Confidence 8999999999999866655 4555554 9999999998775433221 2233567777777543322110
Q ss_pred CccCccccceEeecccCCCCCCCCccccC--CCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCC
Q 040699 232 LTAPNFQLSRLSLSSSYGDGFIFPKFLYH--QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHS 309 (689)
Q Consensus 232 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 309 (689)
........+..+.. .++++.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..|.+
T Consensus 249 ---------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 249 ---------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp ---------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred ---------------ccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 01111111122222 368999999999998665554 588999999999999999988889999
Q ss_pred CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699 310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389 (689)
Q Consensus 310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 389 (689)
+++|++|++++|.+++..+. .+..+++|+.|++++|.+....+..|.++++|+.|++++|.++ .++. +++|+.
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~ 385 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPD 385 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSE
T ss_pred CCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-----CCCcch
Confidence 99999999999999844444 4555899999999999999888888999999999999999997 5543 789999
Q ss_pred EEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCCh-hhcCCCCCcEEEcCCC
Q 040699 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNN 467 (689)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n 467 (689)
|++++|++..... ...+++.|++++|++.+... ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|
T Consensus 386 L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 386 IFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp EEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred hccCCCCcccccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 9999999986533 25689999999999876532 3456899999999999999865443 4566899999999999
Q ss_pred ccc-----cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCC
Q 040699 468 HLE-----GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV 542 (689)
Q Consensus 468 ~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 542 (689)
.++ +..+..|..+++|++|++++|.+++ ..|..|.++++|+.|+|++|++++..+..+. ++|
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-----------LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL 528 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-----------CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred ccccccccccchhhhcCcccccEEECCCCcccc-----------cChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence 997 3445678899999999999998773 6777899999999999999999988777776 899
Q ss_pred CEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 543 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 543 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
+.|++++|++++..|+.+ .+|+.+++++|++.|.++-
T Consensus 529 ~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred cEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 999999999999988775 4789999999999998873
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=422.03 Aligned_cols=512 Identities=21% Similarity=0.222 Sum_probs=390.6
Q ss_pred CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCee
Q 040699 7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL 86 (689)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 86 (689)
.+.++-++..++. +|..+. +++++|++++|.++.....++.. +++|++|++++|.+++.. ...|.++++|++|
T Consensus 9 ~~~~~c~~~~l~~---ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFYK---IPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCSS---CCSSSC--SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEEC-TTTTTTCTTCCEE
T ss_pred CcEEEeCCCCccc---cCCCcc--ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccC-cccccCchhCCEE
Confidence 3456676666655 454443 57999999999988764446666 899999999999988554 3478899999999
Q ss_pred eCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEE
Q 040699 87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRIL 165 (689)
Q Consensus 87 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 165 (689)
++++|.+ ..++...+..+++|++|++++|.... ++...++++++|++|++++|.+++ ..|..|+++++|++|
T Consensus 82 ~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 82 ILTGNPI---QSLALGAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp ECTTCCC---CEECTTTTTTCTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred eCcCCcC---CccCHhhhcCcccccccccccccccc----CCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 9999988 33433333348999999999985444 554468899999999999999886 368899999999999
Q ss_pred EccceeeeeecCcccccCCCCC----CEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccce
Q 040699 166 YVSYNQLTGSISSSPLVHLTSI----EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241 (689)
Q Consensus 166 ~L~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 241 (689)
++++|.++ .++...+..+++| +.+++++|.++.. ....+... +|+.+++++|......
T Consensus 155 ~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~~~~--------------- 216 (570)
T 2z63_A 155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNV--------------- 216 (570)
T ss_dssp ECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSCTTH---------------
T ss_pred eCcCCccc-eecHHHccchhccchhhhhcccCCCCceec-CHHHhccC-cceeEecccccccccc---------------
Confidence 99999998 4554467777777 8899999988743 33344443 7888888877432211
Q ss_pred EeecccCCCCCCCCccccCCCCCCEEEccCCcCc-----CCCChHHHhcCC--CCcEEEeeCC-CCCCCCCCCCCCCCCc
Q 040699 242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMN-----GEFPTWLLENNT--KLRQLSLVND-SLAGPFRLPIHSHKRL 313 (689)
Q Consensus 242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~L 313 (689)
++..+..++.++...+....+. ..++...+..++ .++.+++..+ .+.+..+..+..+++|
T Consensus 217 ------------~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 217 ------------MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp ------------HHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred ------------hhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 1111122222222211110000 011111122222 3556666666 5666667778888899
Q ss_pred CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS 393 (689)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 393 (689)
++|++++|.+. .+|..+.. + +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|+++
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~ 355 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLS 355 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECC
T ss_pred cEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCc
Confidence 99999999887 67776655 4 8999999999887 4443 4678899999999988755554 458899999999
Q ss_pred CCcCCccC--cccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccc
Q 040699 394 NNSLKGHM--FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLE 470 (689)
Q Consensus 394 ~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~ 470 (689)
+|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred CCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 99888654 56677899999999999998876555 8999999999999999986655 57889999999999999999
Q ss_pred cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550 (689)
Q Consensus 471 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 550 (689)
+..|..+..+++|++|++++|.+++ +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccchhhhhcCCcCcEEECcCCcCcc----------ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8899999999999999999998752 257788999999999999999999888999999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99998888899999999999999999999986
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-45 Score=408.12 Aligned_cols=500 Identities=20% Similarity=0.229 Sum_probs=391.8
Q ss_pred CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699 5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84 (689)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 84 (689)
+++++|||++|.+++ ..+..|.++++|++|++++|.++......+.. +++|++|++++|.+++..+ ..|.++++|+
T Consensus 28 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLAL-GAFSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECT-TTTTTCTTCC
T ss_pred ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCH-hhhcCccccc
Confidence 479999999999988 44667999999999999999998763345666 9999999999999986544 4799999999
Q ss_pred eeeCCCCccccCCccch-hhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCC-
Q 040699 85 HLDMSSTRIALNTSFLQ-IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL- 162 (689)
Q Consensus 85 ~L~L~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L- 162 (689)
+|++++|.+ ..++. .+.. +++|++|++++|.... ..+|. .++++++|++|++++|.+++..+..++.+++|
T Consensus 104 ~L~L~~n~l---~~l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 104 KLVAVETNL---ASLENFPIGH-LKTLKELNVAHNLIQS--FKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp EEECTTSCC---CCSTTCSCTT-CTTCCEEECCSSCCCC--CCCCG-GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred ccccccccc---ccCCCccccc-cccccEEecCCCccce--ecChh-hhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 999999998 33333 3444 9999999999984322 01454 79999999999999999998888889888888
Q ss_pred ---cEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCcccc
Q 040699 163 ---RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 239 (689)
Q Consensus 163 ---~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 239 (689)
+.|++++|.++ .++...+... +|+.|++++|..........+..+..++...+....+.... .+
T Consensus 177 ~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-----------~l 243 (570)
T 2z63_A 177 LLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-----------NL 243 (570)
T ss_dssp TCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS-----------SC
T ss_pred hhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch-----------hh
Confidence 89999999998 4555466655 89999999885432222234555666665554432221100 01
Q ss_pred ceEeecccCCCCCCCCccccCCCCCCEEEccCC-cCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEc
Q 040699 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHI-KMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI 318 (689)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (689)
+.+. ......+..+ .++.++++.+ .+.+..|.. +..+++|+.|+++++.+.+ .+..+..+ +|++|++
T Consensus 244 ~~~~--------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l 311 (570)
T 2z63_A 244 EKFD--------KSALEGLCNL-TIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLEL 311 (570)
T ss_dssp EECC--------TTTTGGGGGS-EEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEE
T ss_pred hhcc--------hhhhcccccc-chhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchh-hhhhhccC-CccEEee
Confidence 1100 0000111111 2456666666 555555554 5778999999999988885 45566777 9999999
Q ss_pred cCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccch-hhhhcCCCCCCEEEccCCcC
Q 040699 319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIP-EHLAVGCVNLESLVLSNNSL 397 (689)
Q Consensus 319 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l 397 (689)
++|.+. .+|.. .+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+... ...+.++++|++|++++|.+
T Consensus 312 ~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 312 VNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp ESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred ccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 999998 77763 478999999999988765554 788999999999999874321 23445599999999999999
Q ss_pred CccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccc-cCCcc
Q 040699 398 KGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE-GPIPV 475 (689)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~ 475 (689)
.+.... +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|++. +..|.
T Consensus 386 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 386 ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp EEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence 876665 8899999999999999887655 57889999999999999999888999999999999999999997 56888
Q ss_pred cccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCC
Q 040699 476 EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555 (689)
Q Consensus 476 ~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 555 (689)
.+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..|.++++|++|++++|++++.
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhcccCCCEEECCCCcccc-----------CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99999999999999998873 6688899999999999999999998888999999999999999999976
Q ss_pred Cch
Q 040699 556 IPH 558 (689)
Q Consensus 556 ~~~ 558 (689)
.|.
T Consensus 534 ~~~ 536 (570)
T 2z63_A 534 CPR 536 (570)
T ss_dssp TTT
T ss_pred Ccc
Confidence 653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.6e-45 Score=399.41 Aligned_cols=488 Identities=17% Similarity=0.177 Sum_probs=349.2
Q ss_pred CCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCC
Q 040699 30 FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS 109 (689)
Q Consensus 30 ~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 109 (689)
|+...+.+.+++.++.. |. ...++|++|++++|.+++..+ ..|.++++|++|++++|.+ .+..+..+.. +++
T Consensus 4 C~~~~~c~~~~~~l~~i--p~--~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~-l~~ 75 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSI--PS--GLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRI--NTIEGDAFYS-LGS 75 (549)
T ss_dssp ECTTSEEECTTSCCSSC--CS--CCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCC--CEECTTTTTT-CTT
T ss_pred CCCCceEECCCCccccc--cc--cCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCc--CccChhhccc-ccc
Confidence 34445567777777653 32 113689999999999886554 3788999999999999988 3333344444 889
Q ss_pred ccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEEEccceeeeeecCcccccCCCCCC
Q 040699 110 LKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE 188 (689)
Q Consensus 110 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 188 (689)
|++|++++|.... +++..++++++|++|++++|.+++ ..|..|+.+++|++|++++|.+.+.++...+..+++|+
T Consensus 76 L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 76 LEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp CCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCEEECCCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 9999999885444 555568889999999999998886 35677888999999999988854577766788888999
Q ss_pred EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCcc-ccCCCCCCEE
Q 040699 189 KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF-LYHQHDLEYA 267 (689)
Q Consensus 189 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L 267 (689)
+|++++|.+++..+ ..+..+++|+.|+++.|.+.. +|.+ +..+++|+.|
T Consensus 152 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~-----------------------------~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 152 ELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAF-----------------------------LLEIFADILSSVRYL 201 (549)
T ss_dssp EEEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTT-----------------------------HHHHHHHSTTTBSEE
T ss_pred eeeccCCcccccCh-hhhhccccCceEecccCcccc-----------------------------cchhhHhhcccccEE
Confidence 99998888875433 556777888888877765421 1111 2346788888
Q ss_pred EccCCcCcCCC--ChHHHhcCCCCcEEEeeCCCCCCCCC----CCCCCCCCcCEEEccCCcCcccCC-----hhhhhcCC
Q 040699 268 DLSHIKMNGEF--PTWLLENNTKLRQLSLVNDSLAGPFR----LPIHSHKRLGMLDISNNNFRGHIP-----LEIGDILP 336 (689)
Q Consensus 268 ~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~~~~ 336 (689)
++++|.+.+.. +..+...+++|+.|+++++.+.+..+ ..+..+++|+.+++++|.+.+... ......++
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 88888877532 22223456788888888887765322 223556788888888887653211 11123466
Q ss_pred CceEEEccCCcCCcc-----ccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCc---ccccCC
Q 040699 337 SLHVFNISMNALDGS-----IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF---SRNFNL 408 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l 408 (689)
+++.|++.++.+... .+..+...++|+.|++++|.+. .+|..++.++++|++|++++|.+.+..+ ..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 788888888766532 1222344567888888888886 7887777668888888888888876542 335678
Q ss_pred CCccEEeccCCccccccc--ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEE
Q 040699 409 ANLMSLQLEGNHFIGEIS--QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 486 (689)
Q Consensus 409 ~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 486 (689)
++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. |..+ .++|++|
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L 436 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVL 436 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEE
Confidence 888888888888765532 45778888888888888887 5677777888888888888888743 3222 2578888
Q ss_pred eccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 040699 487 DISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 566 (689)
Q Consensus 487 ~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 566 (689)
++++|++++ . ...+++|++|++++|+++ .+|. ...+++|++|++++|++++..|+.+..+++|
T Consensus 437 ~Ls~N~l~~------------~---~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 437 DVSNNNLDS------------F---SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp ECCSSCCSC------------C---CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred ECCCCChhh------------h---cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc
Confidence 888887762 1 246778888888888888 4454 3567888888888888888888888888888
Q ss_pred CEEeccCCcCcCCCC
Q 040699 567 EVFSVAYNNLSGEIP 581 (689)
Q Consensus 567 ~~L~l~~N~l~~~~~ 581 (689)
+.|++++|++.|.+|
T Consensus 500 ~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 500 QKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEecCCCccCCCc
Confidence 888888888888877
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.6e-45 Score=398.94 Aligned_cols=492 Identities=20% Similarity=0.198 Sum_probs=387.2
Q ss_pred CCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCC
Q 040699 4 FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL 83 (689)
Q Consensus 4 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 83 (689)
|+...+.|.+++.++. +|..+. ++|++|++++|.++......+.. +++|++|++++|.+.+..+ ..|.++++|
T Consensus 4 C~~~~~c~~~~~~l~~---ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L 76 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEG-DAFYSLGSL 76 (549)
T ss_dssp ECTTSEEECTTSCCSS---CCSCCC--TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred CCCCceEECCCCcccc---ccccCC--CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccCh-hhccccccC
Confidence 5666778999998886 565443 79999999999998763345666 9999999999999986554 479999999
Q ss_pred CeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCc-CccCCCccccCCCCC
Q 040699 84 EHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADND-LRGSLPWCLANMTSL 162 (689)
Q Consensus 84 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 162 (689)
++|++++|.+ .+..+..+.. +++|++|++++|.... ...+. .++++++|++|++++|. +....+..|+.+++|
T Consensus 77 ~~L~Ls~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 77 EHLDLSDNHL--SSLSSSWFGP-LSSLKYLNLMGNPYQT--LGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CEEECTTSCC--CSCCHHHHTT-CTTCCEEECTTCCCSS--SCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CEEECCCCcc--CccCHHHhcc-CCCCcEEECCCCcccc--cchhh-hhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 9999999998 4444444554 9999999999994432 01333 68899999999999998 454445789999999
Q ss_pred cEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceE
Q 040699 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL 242 (689)
Q Consensus 163 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 242 (689)
++|++++|.+++..+. .+..+++|++|++++|.+.. .+...+..+++|+.|++++|.+.+.....
T Consensus 151 ~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 215 (549)
T 2z81_A 151 NELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSP------------- 215 (549)
T ss_dssp EEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCC-------------
T ss_pred CeeeccCCcccccChh-hhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccc-------------
Confidence 9999999999966666 79999999999999998752 22223456899999999999875431100
Q ss_pred eecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHH---HhcCCCCcEEEeeCCCCCCCCC------CCCCCCCCc
Q 040699 243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLAGPFR------LPIHSHKRL 313 (689)
Q Consensus 243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~L 313 (689)
......+++|+.|+++++.+.+..+..+ +..+++++.++++++.+.+... ..+..++++
T Consensus 216 ------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 216 ------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred ------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 0112345778899999988876555443 3467899999999988776422 235677899
Q ss_pred CEEEccCCcCcccC----ChhhhhcCCCceEEEccCCcCCccccccc-cCCCCCcEEeccCCcccccchhh--hhcCCCC
Q 040699 314 GMLDISNNNFRGHI----PLEIGDILPSLHVFNISMNALDGSIPSSF-GNMNFLRILDLSNNQLTGEIPEH--LAVGCVN 386 (689)
Q Consensus 314 ~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~ 386 (689)
+.|++.++.+.... -...+...++|+.|++++|.+.. +|..+ .++++|++|++++|++.+.+|.. .+..+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 99999998765211 01123346789999999999984 55544 68999999999999998766643 2456899
Q ss_pred CCEEEccCCcCCccCc--ccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699 387 LESLVLSNNSLKGHMF--SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM 464 (689)
Q Consensus 387 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 464 (689)
|++|++++|.+++... ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+. .++..+ .++|++|++
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~L 438 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDV 438 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEEC
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEEC
Confidence 9999999999987643 45788999999999999988 56778889999999999999998 344433 368999999
Q ss_pred CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699 465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES 544 (689)
Q Consensus 465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 544 (689)
++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|++
T Consensus 439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~------------~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 439 SNNNLDSFS----LFLPRLQELYISRNKLK------------TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCS------------SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred CCCChhhhc----ccCChhcEEECCCCccC------------cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 999998643 57899999999999887 5665 467899999999999999999999999999999
Q ss_pred EeCcCCcCCCCCc
Q 040699 545 LDLSNNKLNGKIP 557 (689)
Q Consensus 545 L~L~~N~l~~~~~ 557 (689)
|++++|++.+..|
T Consensus 502 L~l~~N~~~~~~~ 514 (549)
T 2z81_A 502 IWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEecCCCccCCCc
Confidence 9999999998776
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-44 Score=403.43 Aligned_cols=563 Identities=21% Similarity=0.218 Sum_probs=378.5
Q ss_pred ccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccch
Q 040699 22 TTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQ 101 (689)
Q Consensus 22 ~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 101 (689)
.+|..+- +++++|+|++|+|+.....++.. +++|++|+|++|.++++. .+.|.++++|++|+|++|++ ..++.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l---~~l~~ 117 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI---QSLAL 117 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC---CEECG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcC---CCCCH
Confidence 3565442 47899999999988753335666 899999999999887544 44788899999999999988 55666
Q ss_pred hhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEEEccceeeeeecCccc
Q 040699 102 IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSSP 180 (689)
Q Consensus 102 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 180 (689)
..+.++++|++|+|++|.... +++..|+++++|++|++++|.++. ..|..++.+++|++|++++|+++ .++...
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~ 192 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 192 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGG
T ss_pred HHhcCCCCCCEEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-cccccc
Confidence 555568999999999885544 666578899999999999998875 35778888999999999999988 444445
Q ss_pred ccCCCC----CCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccC---CCCCC
Q 040699 181 LVHLTS----IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSY---GDGFI 253 (689)
Q Consensus 181 ~~~l~~----L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~ 253 (689)
+..+.+ ...++++.|.+.. ++.. ......++.+++.+|..................+..+.+.... .....
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccchhhhhhhhhhhhcccCcccc-cCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 655443 3468888888763 2222 2333456677777765433222111111111122222221111 11111
Q ss_pred CCccccCCCCCCEEEccCCcCcCCC--ChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhh
Q 040699 254 FPKFLYHQHDLEYADLSHIKMNGEF--PTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEI 331 (689)
Q Consensus 254 ~~~~l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 331 (689)
....+.....+...++..+...... ....+....+++.+.+.++.+..... +.....++.|++.+|.+. .++..
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~-~~~~~- 346 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFG-QFPTL- 346 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEES-SCCCC-
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhccccccc-CcCcc-
Confidence 2222333344444444332221110 01123556778888888777665433 445567888888888876 33332
Q ss_pred hhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccc--cchhhhhcCCCCCCEEEccCCcCCccCcccccCCC
Q 040699 332 GDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG--EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA 409 (689)
Q Consensus 332 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 409 (689)
.++.|+.+++..|..... ..+..+++|+.++++.|.+.. ..+... ..+.+|+.+++..+..... ...+..++
T Consensus 347 --~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~-~~~~~~l~ 420 (635)
T 4g8a_A 347 --KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTISLKYLDLSFNGVITM-SSNFLGLE 420 (635)
T ss_dssp --BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHH-HSCSCCCEEECCSCSEEEE-CSCCTTCT
T ss_pred --cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccch-hhhhhhhhhhccccccccc-cccccccc
Confidence 256788888888876533 234567888888888887752 223333 3477888888888876553 34566788
Q ss_pred CccEEeccCCcccccc-cccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcc-ccCCcccccCCCCCcEEe
Q 040699 410 NLMSLQLEGNHFIGEI-SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL-EGPIPVEFCQLDLLQILD 487 (689)
Q Consensus 410 ~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~ 487 (689)
+|+.+++.++...... ...+..+++++.++++.|.+.+..+..+.++++|+.|++++|.+ ....|..|..+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 8888888877765443 34677788888888888888877788888888888888888874 345677788888888888
Q ss_pred ccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC-CCC
Q 040699 488 ISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTL 566 (689)
Q Consensus 488 l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L 566 (689)
+++|++++ ..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|+.+..+ ++|
T Consensus 501 Ls~N~L~~-----------l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 501 LSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp CTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred CCCCccCC-----------cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence 88887763 567778888888888888888888888888888888888888888888888888877 678
Q ss_pred CEEeccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCC
Q 040699 567 EVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERD 625 (689)
Q Consensus 567 ~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~ 625 (689)
+.|++++||+.|.|.- |+..|..-.. ...-+.....|++|+..+|.++.+++.
T Consensus 570 ~~L~L~~Np~~C~C~~~~~~~wl~~~~------~~~~~~~~~~C~~P~~~~g~~l~~~~~ 623 (635)
T 4g8a_A 570 AFLNLTQNDFACTCEHQSFLQWIKDQR------QLLVEVERMECATPSDKQGMPVLSLNI 623 (635)
T ss_dssp CEEECTTCCBCCSGGGHHHHHHHHHTT------TTBSCGGGCBBCSSTTTTTCBGGGCCC
T ss_pred CEEEeeCCCCcccCCcHHHHHHHHhCC------CccCCCCCceeCCchHHCCCEeeeecc
Confidence 8888888888887752 2222210000 011111223789999999988877753
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=392.91 Aligned_cols=459 Identities=17% Similarity=0.168 Sum_probs=357.8
Q ss_pred cEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCC
Q 040699 59 KNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHL 138 (689)
Q Consensus 59 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L 138 (689)
++|++++|.++. +|. .+. ++|++|++++|.+ .+..+..+.. +++|++|+|++|.+.. +.+..|+++++|
T Consensus 3 ~~l~ls~n~l~~-ip~-~~~--~~L~~L~Ls~n~i--~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK-DLS--QKTTILNISQNYI--SELWTSDILS-LSKLRILIISHNRIQY----LDISVFKFNQEL 71 (520)
T ss_dssp CEEECTTSCCSS-CCC-SCC--TTCSEEECCSSCC--CCCCHHHHTT-CTTCCEEECCSSCCCE----EEGGGGTTCTTC
T ss_pred ceEecCCCCccc-ccc-ccc--ccccEEECCCCcc--cccChhhccc-cccccEEecCCCccCC----cChHHhhcccCC
Confidence 589999999984 443 344 8999999999998 4444445554 9999999999985544 544589999999
Q ss_pred CEEeCCCCcCccCCCccccCCCCCcEEEccceeeee-ecCcccccCCCCCCEEeccCCcceeecCcccccCCCCc--cee
Q 040699 139 QELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTG-SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL--KIF 215 (689)
Q Consensus 139 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L 215 (689)
++|+|++|.++ .+|.. .+++|++|++++|.+++ .+|. .++.+++|++|++++|.++. ..+..+++| +.|
T Consensus 72 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 72 EYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV 143 (520)
T ss_dssp CEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEE
T ss_pred CEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEE
Confidence 99999999998 45554 78999999999999984 2444 78899999999999998874 345556666 888
Q ss_pred eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCC-CCCEEEccCCcCcCCCChHHHhcCCCCcEEEe
Q 040699 216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQH-DLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294 (689)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 294 (689)
++++|.+.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++
T Consensus 144 ~l~~n~l~~--------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 144 LLVLGETYG--------------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEECTTTT--------------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred Eeecccccc--------------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 888887621 111222222222 22345677777777777666677888888888
Q ss_pred eCCC-------CCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhh--cCCCceEEEccCCcCCccccccc-----cCCC
Q 040699 295 VNDS-------LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD--ILPSLHVFNISMNALDGSIPSSF-----GNMN 360 (689)
Q Consensus 295 ~~~~-------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~-----~~l~ 360 (689)
++|. +.+..+ .+..+++|+.|++++|.+.+..+..... ..++|+.|++++|.+.+.+|..+ ..++
T Consensus 198 ~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred cccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 8876 444333 5778889999999998887543332221 24689999999999988888888 8999
Q ss_pred CCcEEeccCCcccccchhhhhcCC---CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCE
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGC---VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG 437 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 437 (689)
+|+.+++++|.+ .+|......+ .+|+.|++++|.+..... ...+++|++|++++|.+.+..|..+..+++|++
T Consensus 277 ~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 277 ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred eeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 999999999998 5663222223 679999999999876432 257899999999999999888899999999999
Q ss_pred EECCCCCCCC--cCChhhcCCCCCcEEEcCCCccccCCcc-cccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699 438 LFLNNNNLSG--KIPRWLGDLTRLQYIIMPNNHLEGPIPV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN 514 (689)
Q Consensus 438 L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~ 514 (689)
|++++|.+.+ ..|..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++ ..|..+.
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~l~- 420 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-----------TIFRCLP- 420 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-----------GGGGSCC-
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-----------chhhhhc-
Confidence 9999999986 5567899999999999999999984444 58889999999999998763 4444443
Q ss_pred ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.++
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 78999999999999 677777799999999999999996544458889999999999999999876
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-44 Score=395.96 Aligned_cols=304 Identities=20% Similarity=0.267 Sum_probs=199.3
Q ss_pred CccccCCCCCCEEEccCCc-CcC-CCChHHHhc------CCCCcEEEeeCCCCCCCCCC--CCCCCCCcCEEEccCCcCc
Q 040699 255 PKFLYHQHDLEYADLSHIK-MNG-EFPTWLLEN------NTKLRQLSLVNDSLAGPFRL--PIHSHKRLGMLDISNNNFR 324 (689)
Q Consensus 255 ~~~l~~~~~L~~L~l~~~~-l~~-~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~ 324 (689)
|..+.++++|+.|++++|. +.+ .+|..+ .. +++|++|++++|.++ ..|. .+..+++|++|++++|.++
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 3344455555555665555 554 455443 22 266666666666666 3444 5666666666666666666
Q ss_pred ccCChhhhhcCCCceEEEccCCcCCccccccccCCCC-CcEEeccCCcccccchhhhhc-CCCCCCEEEccCCcCCccCc
Q 040699 325 GHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF-LRILDLSNNQLTGEIPEHLAV-GCVNLESLVLSNNSLKGHMF 402 (689)
Q Consensus 325 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 402 (689)
+.+| . +..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|.+.+..+
T Consensus 344 g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 344 GKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred cchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 6666 2 233566777777777666 55566666666 777777777766 66653322 12367777777777776666
Q ss_pred cccc-------CCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCC-------CCcEEEcCCCc
Q 040699 403 SRNF-------NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT-------RLQYIIMPNNH 468 (689)
Q Consensus 403 ~~~~-------~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-------~L~~L~l~~n~ 468 (689)
..+. .+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.... +|++|++++|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 6555 666777777777777755555566677777777777777733333333322 77788888887
Q ss_pred cccCCccccc--CCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEec------cCcccccCCcccccCCC
Q 040699 469 LEGPIPVEFC--QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL------SHNDLTGSIPSTFSNLK 540 (689)
Q Consensus 469 l~~~~~~~~~--~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~ 540 (689)
++ .+|..+. .+++|++|++++|+++ .+|..+..+++|++|++ ++|++.+.+|..+..++
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~------------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFS------------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCS------------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CC-ccChhhhhccCCCcCEEECCCCCCC------------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 77 4556655 7778888877777765 36777777788888877 45667777788888888
Q ss_pred CCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCC
Q 040699 541 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 580 (689)
Q Consensus 541 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 580 (689)
+|++|+|++|++ +.+|..+. ++|+.|++++|++.+.-
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 888888888888 46666654 68888888888777543
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.2e-42 Score=383.36 Aligned_cols=537 Identities=18% Similarity=0.163 Sum_probs=399.7
Q ss_pred CEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEE
Q 040699 34 EYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYL 113 (689)
Q Consensus 34 ~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L 113 (689)
++.+-++-+++. +|. ...+++++|+|++|.+++. +...|.++++|++|+|++|.+ ..++...+.++++|++|
T Consensus 34 ~~~~c~~~~l~~--vP~--~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 34 ITYQCMELNFYK--IPD--NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp TEEECTTSCCSS--CCS--SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEE
T ss_pred CEEECCCCCcCc--cCC--CCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEE
Confidence 344555545554 231 1124899999999999855 445899999999999999998 55666656669999999
Q ss_pred ECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEecc
Q 040699 114 SLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193 (689)
Q Consensus 114 ~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 193 (689)
+|++|.+.. +++..|.++++|++|+|++|.+++..+..|+++++|++|++++|.+++.-....+..+++|++|+++
T Consensus 106 ~Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 106 ILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp ECTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred EccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 999996555 7777899999999999999999987778899999999999999999743223367889999999999
Q ss_pred CCcceeecCcccccCCCC----cceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEc
Q 040699 194 NNHFRIPISLEPLFNHSR----LKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADL 269 (689)
Q Consensus 194 ~n~l~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 269 (689)
+|.+++. ....+..+.+ ...++++.|.+....+.. .....+..+.+..........+..+..+..++...+
T Consensus 182 ~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~----~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 182 SNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp SSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred Ccccccc-ccccccchhhhhhhhhhhhcccCcccccCccc----ccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence 9998743 2233433332 346777888776543322 222244555552221111122334455666665554
Q ss_pred cCCcCcC-----CCChHHHhcCCCCcEEEeeCCCCCC---CCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699 270 SHIKMNG-----EFPTWLLENNTKLRQLSLVNDSLAG---PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341 (689)
Q Consensus 270 ~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 341 (689)
....... ......+.....+....+..+.... .....+....+++.+++.++.+. .++. +.....++.|
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~--~~~~~~L~~L 333 (635)
T 4g8a_A 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQHL 333 (635)
T ss_dssp EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGG--GGSCCCCSEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccc--cccchhhhhh
Confidence 3222110 1111113344555555554433222 12334566778899999998876 3333 2335689999
Q ss_pred EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCcc--CcccccCCCCccEEeccCC
Q 040699 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH--MFSRNFNLANLMSLQLEGN 419 (689)
Q Consensus 342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n 419 (689)
++.+|.+....+ ..+..|+.++++.|... ..+.. ..+++|+.+++++|.+... .+..+..+.+|+.+++..+
T Consensus 334 ~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 334 ELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp EEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCCC--CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hcccccccCcCc---ccchhhhhcccccccCC-CCccc--ccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 999998875443 34678899999998876 33322 2488999999999988643 3445567889999999999
Q ss_pred cccccccccccCCCCCCEEECCCCCCCCcC-ChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccc
Q 040699 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKI-PRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLD 498 (689)
Q Consensus 420 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ 498 (689)
.... .+..+..+++|+.++++.+...... +..+..+++++.+++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 408 ~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~--- 483 (635)
T 4g8a_A 408 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--- 483 (635)
T ss_dssp SEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---
T ss_pred cccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc---
Confidence 8764 4556888999999999988766443 3568889999999999999999999999999999999999997542
Q ss_pred cCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699 499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 499 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 578 (689)
+..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|+.|++++|++++
T Consensus 484 -------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 484 -------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred -------ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 2567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccc-cccCcccccCCcCCCCCCCC
Q 040699 579 EIPEWEAQF-ATFNENSYEGNTFLCGLPLP 607 (689)
Q Consensus 579 ~~~~~~~~~-~~~~~~~~~~n~~~c~~~~~ 607 (689)
..|+.+..+ .+++.+++.+|||.|+|...
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 999888776 67999999999999999753
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=378.66 Aligned_cols=465 Identities=18% Similarity=0.165 Sum_probs=327.1
Q ss_pred CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699 8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD 87 (689)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 87 (689)
++||+++|.++. +|..+. ++|++|++++|.++......+.. +++|++|++++|.+++..+. .|.++++|++|+
T Consensus 3 ~~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDIS-VFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred ceEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence 589999999987 565554 89999999999998863346666 99999999999999866554 789999999999
Q ss_pred CCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCC--cEE
Q 040699 88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL--RIL 165 (689)
Q Consensus 88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L 165 (689)
+++|.+ ..++.. .+++|++|++++|.... ..+|. .++++++|++|++++|.+++ ..+..+++| +.|
T Consensus 76 Ls~N~l---~~lp~~---~l~~L~~L~L~~N~l~~--~~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 76 LSHNKL---VKISCH---PTVNLKHLDLSFNAFDA--LPICK-EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp CCSSCC---CEEECC---CCCCCSEEECCSSCCSS--CCCCG-GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred cCCCce---eecCcc---ccCCccEEeccCCcccc--ccchh-hhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 999998 355554 48999999999984332 01343 78899999999999998875 457777777 999
Q ss_pred Eccceee--eeecCcccccCCC-CCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceE
Q 040699 166 YVSYNQL--TGSISSSPLVHLT-SIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL 242 (689)
Q Consensus 166 ~L~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 242 (689)
++++|.+ .+..+. .+..+. ....+++++|.+.+......+.++++|+.+++++|.......
T Consensus 144 ~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------- 207 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS--------------- 207 (520)
T ss_dssp EEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---------------
T ss_pred Eeecccccccccccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc---------------
Confidence 9999988 544444 455544 233667777877665555667778888888887764100000
Q ss_pred eecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHh--cCCCCcEEEeeCCCCCCCCCCCC-----CCCCCcCE
Q 040699 243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLE--NNTKLRQLSLVNDSLAGPFRLPI-----HSHKRLGM 315 (689)
Q Consensus 243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~ 315 (689)
...+.++ .+..+++|+.|+++++.+.+..+..+.. ..++|++|++++|.+.+..|..+ ..+++|+.
T Consensus 208 ------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 208 ------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp ------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred ------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 0000111 3445667777777776665433322211 23466666666666665555444 44555555
Q ss_pred EEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCC---CCCcEEeccCCcccccchhhhhcCCCCCCEEEc
Q 040699 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM---NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL 392 (689)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 392 (689)
+++++|.+ .+|. ..+..+ .+|+.|++++|.+. .++. ...+++|++|++
T Consensus 281 l~l~~n~~--~~p~------------------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L 331 (520)
T 2z7x_B 281 HQVVSDVF--GFPQ------------------------SYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFLHLDF 331 (520)
T ss_dssp EEEEECCC--CSCT------------------------HHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEEC
T ss_pred ccccccce--ecch------------------------hhhhcccccCceeEEEcCCCccc-cccc--hhhCCcccEEEe
Confidence 55555554 3331 222211 34555555555544 2211 124667777777
Q ss_pred cCCcCCccCcccccCCCCccEEeccCCcccc--cccccccCCCCCCEEECCCCCCCCcCCh-hhcCCCCCcEEEcCCCcc
Q 040699 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIG--EISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHL 469 (689)
Q Consensus 393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~l 469 (689)
++|.+.+..+..+..+++|++|++++|++.+ ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 7777776666677778888888888888775 4456788889999999999998874554 478889999999999998
Q ss_pred ccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcC
Q 040699 470 EGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549 (689)
Q Consensus 470 ~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 549 (689)
++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..+++|++|++++
T Consensus 412 ~~~~~~~l~--~~L~~L~Ls~N~l~------------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 412 TDTIFRCLP--PRIKVLDLHSNKIK------------SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CGGGGGSCC--TTCCEEECCSSCCC------------CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred Ccchhhhhc--ccCCEEECCCCccc------------ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 776665553 78999999999887 6788778999999999999999965555589999999999999
Q ss_pred CcCCCCCc
Q 040699 550 NKLNGKIP 557 (689)
Q Consensus 550 N~l~~~~~ 557 (689)
|++++..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99987544
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-42 Score=386.39 Aligned_cols=400 Identities=17% Similarity=0.238 Sum_probs=233.2
Q ss_pred CCCCEEeCCC--CcCccCCCccccCCCCCcEEEccceeeee-----------------ecCccccc--CCCCCCEEeccC
Q 040699 136 MHLQELYMAD--NDLRGSLPWCLANMTSLRILYVSYNQLTG-----------------SISSSPLV--HLTSIEKLYLSN 194 (689)
Q Consensus 136 ~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~--~l~~L~~L~l~~ 194 (689)
..++.+.+.. |.+++ +|..|+++++|++|++++|.+++ .+|. .+. ++++|++|++++
T Consensus 423 l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEES
T ss_pred cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcC
Confidence 3444444443 67776 67778888888888888888875 2666 555 788888888888
Q ss_pred CcceeecCcccccCCCCcceeeccCCc-ccc-cccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCC
Q 040699 195 NHFRIPISLEPLFNHSRLKIFYADNNE-LNA-EITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHI 272 (689)
Q Consensus 195 n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (689)
|.+.+.++ ..+.++++|+.|++++|. +.+ .++.... .+ +..+..+++|+.|++++|
T Consensus 501 N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~---------~L------------~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 501 CPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWT---------RL------------ADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp CTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHH---------HH------------HHCTTTTTTCCEEECCSS
T ss_pred CCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHH---------hh------------hhcccccCCccEEEeeCC
Confidence 87765555 556777777777777776 554 3322110 00 001224457777777777
Q ss_pred cCcCCCCh-HHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC-ceEEEccCCcCCc
Q 040699 273 KMNGEFPT-WLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS-LHVFNISMNALDG 350 (689)
Q Consensus 273 ~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~ 350 (689)
.+. .+|. ..+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.+.
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-
Confidence 777 6665 22467777777777777776 344 6677777777777777776 66665444 455 777777777766
Q ss_pred cccccccCCCC--CcEEeccCCcccccchhhh---h-cCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc
Q 040699 351 SIPSSFGNMNF--LRILDLSNNQLTGEIPEHL---A-VGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE 424 (689)
Q Consensus 351 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 424 (689)
.+|..+..++. |+.|++++|++.+.+|... . ..+++|+.|++++|.+..+....+..+++|+.|++++|.+...
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 45666655543 7777777777665443211 0 0133566666666666544443344555666666666655532
Q ss_pred ccccccC-------CCCCCEEECCCCCCCCcCChhhc--CCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699 425 ISQSLSK-------CSSLEGLFLNNNNLSGKIPRWLG--DLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495 (689)
Q Consensus 425 ~~~~~~~-------l~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 495 (689)
.+..+.. +++|++|+|++|.+. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--- 787 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--- 787 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB---
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC---
Confidence 2222221 225666666666665 4555554 56666666666666664 45555566666666666655
Q ss_pred ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCc
Q 040699 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575 (689)
Q Consensus 496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 575 (689)
++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|+
T Consensus 788 --~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 788 --DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp --CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred --CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 4455555555555555555555555555555 24444433 355555555555554443443333333333444443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-41 Score=380.23 Aligned_cols=390 Identities=20% Similarity=0.245 Sum_probs=312.3
Q ss_pred CCcEEEccc--eeeeeecCcccccCCCCCCEEeccCCcceee-----------------cCccccc--CCCCcceeeccC
Q 040699 161 SLRILYVSY--NQLTGSISSSPLVHLTSIEKLYLSNNHFRIP-----------------ISLEPLF--NHSRLKIFYADN 219 (689)
Q Consensus 161 ~L~~L~L~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~--~l~~L~~L~l~~ 219 (689)
.++.+.+.. |.+++ +|. .+.++++|+.|++++|.+++. ++ ..+. ++++|+.|++++
T Consensus 424 ~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEES
T ss_pred chhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcC
Confidence 444444544 88986 888 799999999999999999862 33 2233 666666666666
Q ss_pred CcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCc-CcC-CCChHHH------hcCCCCcE
Q 040699 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIK-MNG-EFPTWLL------ENNTKLRQ 291 (689)
Q Consensus 220 n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~-~~~~~~~------~~~~~L~~ 291 (689)
|.+ .+.+|..+..+++|+.|++++|. +.+ .+|..+. ..+++|+.
T Consensus 501 N~l----------------------------~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 501 CPN----------------------------MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp CTT----------------------------CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred CCC----------------------------CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 543 44667788899999999999998 887 7787642 23459999
Q ss_pred EEeeCCCCCCCCCC--CCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCC-CcEEecc
Q 040699 292 LSLVNDSLAGPFRL--PIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF-LRILDLS 368 (689)
Q Consensus 292 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~ 368 (689)
|++++|.+. ..|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|+++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 999999999 5666 7899999999999999998 888 3455889999999999998 78888999999 9999999
Q ss_pred CCcccccchhhhhcCCC--CCCEEEccCCcCCccCccc---cc--CCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699 369 NNQLTGEIPEHLAVGCV--NLESLVLSNNSLKGHMFSR---NF--NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN 441 (689)
Q Consensus 369 ~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 441 (689)
+|.+. .+|..+. .++ +|+.|++++|.+.+..+.. +. .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 628 ~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 628 HNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705 (876)
T ss_dssp SSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC
T ss_pred CCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC
Confidence 99998 8885443 243 4999999999998755432 22 45689999999999986555556689999999999
Q ss_pred CCCCCCcCChh-hcC-------CCCCcEEEcCCCccccCCccccc--CCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699 442 NNNLSGKIPRW-LGD-------LTRLQYIIMPNNHLEGPIPVEFC--QLDLLQILDISDNNISGRLDLSCNKLIGPIPPK 511 (689)
Q Consensus 442 ~n~i~~~~~~~-l~~-------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~ 511 (689)
+|.+. .+|.. +.. +++|+.|++++|+++ .+|..+. .+++|+.|++++|.++ .+|..
T Consensus 706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~------------~lp~~ 771 (876)
T 4ecn_A 706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS------------SFPTQ 771 (876)
T ss_dssp SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS------------SCCCG
T ss_pred CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC------------ccchh
Confidence 99998 45543 332 239999999999999 6777776 8999999999999887 47888
Q ss_pred hccccccceEeccC------cccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699 512 IGNLTRIQTLNLSH------NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA 585 (689)
Q Consensus 512 ~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 585 (689)
+..+++|+.|+|++ |++.+.+|..+.++++|++|+|++|++ +.+|..+. ++|+.|++++|++....+..++
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 99999999999976 788889999999999999999999999 57887765 6999999999999876666655
Q ss_pred cccccCcccccCCcCCC--CCC
Q 040699 586 QFATFNENSYEGNTFLC--GLP 605 (689)
Q Consensus 586 ~~~~~~~~~~~~n~~~c--~~~ 605 (689)
.........+.+|+..+ +|+
T Consensus 849 ~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 849 PYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHHHTTCCEEECCTTSEEESCG
T ss_pred ccccchheeecCCCccccCCCC
Confidence 55555566667776554 654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-41 Score=370.23 Aligned_cols=463 Identities=17% Similarity=0.181 Sum_probs=332.3
Q ss_pred CCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCC
Q 040699 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCS 134 (689)
Q Consensus 55 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~ 134 (689)
+...+++++++|.+++ +|. .+. ++|++|++++|.+ .+..+..+.. +++|++|+|++|.+.. +++..|.+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i--~~~~~~~~~~-l~~L~~L~Ls~N~l~~----~~~~~~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSI--SELRMPDISF-LSELRVLRLSHNRIRS----LDFHVFLF 98 (562)
T ss_dssp ---CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCC--CCCCGGGTTT-CTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred cCCCcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCc--cccChhhhcc-CCCccEEECCCCCCCc----CCHHHhCC
Confidence 4556889999998885 443 233 7899999999988 3333344444 8888888888884444 54457888
Q ss_pred CCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecC-cccccCCCCCCEEeccCCcceeecCcccccCCCCcc
Q 040699 135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSIS-SSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLK 213 (689)
Q Consensus 135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 213 (689)
+++|++|+|++|.++ .+|.. .+++|++|++++|+++ .++ ...|.++++|++|++++|.++. .....+.++ +|+
T Consensus 99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLS 172 (562)
T ss_dssp CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEE
T ss_pred CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eee
Confidence 888888888888888 44544 7888888888888887 443 2368888888888888888763 222333333 348
Q ss_pred eeeccCCcc--cccccccccCccCccccceEeecccCCCCCCCCccccCCC-CCCEEEccCCcCcCCCChHHHhcCCCCc
Q 040699 214 IFYADNNEL--NAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQH-DLEYADLSHIKMNGEFPTWLLENNTKLR 290 (689)
Q Consensus 214 ~L~l~~n~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 290 (689)
.|++++|.+ .+..+ ..+..+. ..-.++++.|.+.+.++...+..+++|+
T Consensus 173 ~L~L~~n~l~~~~~~~----------------------------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 173 CILLDLVSYHIKGGET----------------------------ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp EEEEEESSCCCCSSSC----------------------------CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred EEEeecccccccccCc----------------------------ccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 888888766 33222 2222211 0113455666666555555455667777
Q ss_pred EEEeeCCCCCC----CCCCCCCCCCCcCEEEccCCcCccc----CChhhhhcCCCceEEEccCCcCCccccccc-----c
Q 040699 291 QLSLVNDSLAG----PFRLPIHSHKRLGMLDISNNNFRGH----IPLEIGDILPSLHVFNISMNALDGSIPSSF-----G 357 (689)
Q Consensus 291 ~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~ 357 (689)
.+++++|...- .....+..+++|+.+++.++.+.+. ++... ..++|+.|++++|.+.+.+|..+ .
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccc
Confidence 77777764110 0112345567777777777766532 12222 23589999999999887777766 6
Q ss_pred CCCCCcEEeccCCcccccchhhhhcC---CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699 358 NMNFLRILDLSNNQLTGEIPEHLAVG---CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS 434 (689)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 434 (689)
.++.|+.++++.+.+ .+|...... ..+|++|++++|.+..... ...+++|++|++++|.+.+..|..+..+++
T Consensus 303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 378 (562)
T 3a79_B 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378 (562)
T ss_dssp SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCC
Confidence 677777777777776 455322211 3679999999998865432 257899999999999999888999999999
Q ss_pred CCEEECCCCCCCCc--CChhhcCCCCCcEEEcCCCcccc-CCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699 435 LEGLFLNNNNLSGK--IPRWLGDLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK 511 (689)
Q Consensus 435 L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~ 511 (689)
|++|++++|.+.+. .|..+..+++|++|++++|++++ ..+..+..+++|++|++++|.+++ ..|..
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~ 447 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-----------SVFRC 447 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-----------GGGSS
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-----------chhhh
Confidence 99999999999863 35678999999999999999998 444568899999999999998763 34443
Q ss_pred hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.++.
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 33 68999999999999 5666666999999999999999955444488999999999999999998874
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-41 Score=374.20 Aligned_cols=450 Identities=18% Similarity=0.252 Sum_probs=346.5
Q ss_pred CCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCc------c------CCCccccCCCCCcEEEccceeeee
Q 040699 108 PSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLR------G------SLPWCLANMTSLRILYVSYNQLTG 174 (689)
Q Consensus 108 ~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~L~~n~l~~ 174 (689)
.+++.|+|+++ ..+. +++ .++++++|++|+|++|.+. + .+|... +.+|+ ++++.+.+.+
T Consensus 81 ~~V~~L~L~~~~l~g~----lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~ 152 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR----VPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDY 152 (636)
T ss_dssp CCEEEEECTTSCCEEE----ECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCC
T ss_pred CCEEEEEecCcccCCc----CCh-HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhcc
Confidence 36788888877 4455 664 7888888888888888652 1 112211 23444 5555554443
Q ss_pred ecCccccc-------------------CCCCCCEEecc--CCcceeecCcccccCCCCcceeeccCCccccc-ccccccC
Q 040699 175 SISSSPLV-------------------HLTSIEKLYLS--NNHFRIPISLEPLFNHSRLKIFYADNNELNAE-ITQSHSL 232 (689)
Q Consensus 175 ~~~~~~~~-------------------~l~~L~~L~l~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~ 232 (689)
..+. .+. ....++.+.+. .|.+++ ++ ..+.++++|+.|++++|.+.+. +...
T Consensus 153 ~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~--- 226 (636)
T 4eco_A 153 DPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEA--- 226 (636)
T ss_dssp CGGG-GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSS---
T ss_pred Cchh-hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCcccccccccc---
Confidence 3332 121 11122223332 456665 44 3577788888888888877652 1110
Q ss_pred ccCccccceEeecccCCCCCCCCcccc--CCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCC-CCC-CCCCCCC
Q 040699 233 TAPNFQLSRLSLSSSYGDGFIFPKFLY--HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS-LAG-PFRLPIH 308 (689)
Q Consensus 233 ~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~ 308 (689)
+.+. ......+.+|..+. ++++|+.|++++|.+.+.+|.. +..+++|++|++++|. +++ ..|..+.
T Consensus 227 ~~~~---------~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 227 WENE---------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp CSCT---------TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cccc---------ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHH
Confidence 0000 00001112677777 8999999999999999999976 5899999999999998 887 6666555
Q ss_pred CC------CCcCEEEccCCcCcccCCh--hhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhh
Q 040699 309 SH------KRLGMLDISNNNFRGHIPL--EIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHL 380 (689)
Q Consensus 309 ~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 380 (689)
.+ ++|++|++++|.++ .+|. .+. .+++|+.|++++|.+.+.+| .|..+++|++|++++|++. .+|..+
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l 372 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF 372 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh
Confidence 54 89999999999999 8887 444 48999999999999997888 8999999999999999998 888775
Q ss_pred hcCCCC-CCEEEccCCcCCccCcccccCCC--CccEEeccCCccccccccccc-------CCCCCCEEECCCCCCCCcCC
Q 040699 381 AVGCVN-LESLVLSNNSLKGHMFSRNFNLA--NLMSLQLEGNHFIGEISQSLS-------KCSSLEGLFLNNNNLSGKIP 450 (689)
Q Consensus 381 ~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~ 450 (689)
. .+++ |++|++++|.+.. .+..+...+ +|+.|++++|.+.+..|..+. .+++|++|++++|.+....+
T Consensus 373 ~-~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 373 C-GFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp E-EECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred h-hhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 5 4888 9999999999994 455665544 899999999999998888888 78899999999999995555
Q ss_pred hhhcCCCCCcEEEcCCCccccCCcccccCCC-------CCcEEeccccccccccccCCCcccCCCchhhc--cccccceE
Q 040699 451 RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD-------LLQILDISDNNISGRLDLSCNKLIGPIPPKIG--NLTRIQTL 521 (689)
Q Consensus 451 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~--~l~~L~~L 521 (689)
..+..+++|++|++++|+++...+..+.... +|++|++++|.++ .+|..+. .+++|+.|
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT------------KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC------------BCCGGGSTTTCTTCCEE
T ss_pred HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC------------ccChhhhhccCCCcCEE
Confidence 5677799999999999999955555555443 8999999999887 6788776 99999999
Q ss_pred eccCcccccCCcccccCCCCCCEEeC------cCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccc
Q 040699 522 NLSHNDLTGSIPSTFSNLKHVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSY 595 (689)
Q Consensus 522 ~L~~n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 595 (689)
++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. +.++.+++
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI 594 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence 999999997 7888999999999999 56888899999999999999999999999 67787643 78999999
Q ss_pred cCCcCCCC
Q 040699 596 EGNTFLCG 603 (689)
Q Consensus 596 ~~n~~~c~ 603 (689)
.+|++.|-
T Consensus 595 s~N~l~~~ 602 (636)
T 4eco_A 595 KDNPNISI 602 (636)
T ss_dssp CSCTTCEE
T ss_pred cCCCCccc
Confidence 99998874
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-40 Score=360.81 Aligned_cols=227 Identities=20% Similarity=0.243 Sum_probs=167.0
Q ss_pred CcCEEEccCCcCcccCChhhh----hcCCCceEEEccCCcCCcccc-cccc---CCCCCcEEeccCCcccccchhhhhcC
Q 040699 312 RLGMLDISNNNFRGHIPLEIG----DILPSLHVFNISMNALDGSIP-SSFG---NMNFLRILDLSNNQLTGEIPEHLAVG 383 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~-~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~~ 383 (689)
+|++|++++|.+++.+|..++ ..++.|+.+++..+.+ .+| ..+. ...+|+.|++++|.+. .++ ....
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~ 351 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPS 351 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSS
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-ccc--CccC
Confidence 566666666666655555442 2233444444444444 122 1111 1246777777777765 222 1134
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc--ccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCc
Q 040699 384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--ISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQ 460 (689)
Q Consensus 384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~ 460 (689)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .|..+..+++|++|++++|.+.+.+| ..+.++++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 77888888888888887778888888999999999988763 34668899999999999999987444 4688899999
Q ss_pred EEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC
Q 040699 461 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK 540 (689)
Q Consensus 461 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 540 (689)
+|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++++.+..+..++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~------------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM------------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC------------CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCT
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc------------ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCC
Confidence 999999999866554443 68999999999887 6777777999999999999999965555599999
Q ss_pred CCCEEeCcCCcCCCCCc
Q 040699 541 HVESLDLSNNKLNGKIP 557 (689)
Q Consensus 541 ~L~~L~L~~N~l~~~~~ 557 (689)
+|++|++++|++.+..+
T Consensus 498 ~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCCCEECCSCCBCCCHH
T ss_pred CCCEEEecCCCcCCCcc
Confidence 99999999999987655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=333.75 Aligned_cols=378 Identities=17% Similarity=0.186 Sum_probs=247.2
Q ss_pred CCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCccee
Q 040699 136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIF 215 (689)
Q Consensus 136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 215 (689)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...|..+++|++|++++|.++.. ....+.++++|+.|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence 45666666666666555666666666666666666665455544566666666666666665532 22344455555555
Q ss_pred eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEee
Q 040699 216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295 (689)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 295 (689)
++++|.+.+..+. ...+..+++|+.|++++|.+.+..|..++..+++|++|+++
T Consensus 109 ~L~~n~l~~~~~~--------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 109 TLTQCNLDGAVLS--------------------------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTSCCBTHHHH--------------------------SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred eCCCCCCCccccC--------------------------cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 5555544321110 01133445566666666665555454444555566666665
Q ss_pred CCCCCCCCCCCCCCC--CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCccc
Q 040699 296 NDSLAGPFRLPIHSH--KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373 (689)
Q Consensus 296 ~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (689)
+|.+.+..+..+..+ .+|+.|++++|.+.+ ++..... ......+..+++|++|++++|++.
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCC
T ss_pred CCcccccChhhhhccccccccccccccCcccc-cchhhcc----------------ccccccccccceeeeEecCCCccc
Confidence 555555444433332 344444444444431 1111000 000112335567888888888877
Q ss_pred ccchhhhhcC--CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccccccc--CCCCCCEEECCCCCCCCcC
Q 040699 374 GEIPEHLAVG--CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS--KCSSLEGLFLNNNNLSGKI 449 (689)
Q Consensus 374 ~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~ 449 (689)
+.++..+... ..+|+.|++++|...+.... .+.+....+..+. ..++|++|++++|.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence 6666555432 26778888887765442111 1111112222222 2468999999999998888
Q ss_pred ChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccc
Q 040699 450 PRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT 529 (689)
Q Consensus 450 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 529 (689)
|..+..+++|++|++++|++++..|..|..+++|++|++++|.+++ ..|..+..+++|++|++++|+++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-----------IDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECGGGGTTCTTCCEEECCSSCCC
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-----------cChhHhcCcccCCEEECCCCccc
Confidence 8889999999999999999998888889999999999999998763 56778899999999999999999
Q ss_pred cCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 530 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 530 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
+..|..|.++++|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88899999999999999999999988777888999999999999999999984
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-36 Score=325.91 Aligned_cols=343 Identities=20% Similarity=0.214 Sum_probs=291.0
Q ss_pred CCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCCh-hh
Q 040699 253 IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPL-EI 331 (689)
Q Consensus 253 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~ 331 (689)
..|..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++.++. ..
T Consensus 45 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 45 LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSST
T ss_pred CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccc
Confidence 34556778899999999999988777666678999999999999999998888999999999999999999854443 23
Q ss_pred hhcCCCceEEEccCCcCCcccccc-ccCCCCCcEEeccCCcccccchhhhhc-CCCCCCEEEccCCcCCccCcccc----
Q 040699 332 GDILPSLHVFNISMNALDGSIPSS-FGNMNFLRILDLSNNQLTGEIPEHLAV-GCVNLESLVLSNNSLKGHMFSRN---- 405 (689)
Q Consensus 332 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~---- 405 (689)
+..+++|+.|++++|.+.+..|.. |.++++|++|++++|++.+..+..+.. ...+|+.|++++|.+.+.....+
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 555889999999999999887766 889999999999999998555544332 12689999999999887665433
Q ss_pred ----cCCCCccEEeccCCcccccccccccCC---CCCCEEECCCCCCCCc----------CChhhcC--CCCCcEEEcCC
Q 040699 406 ----FNLANLMSLQLEGNHFIGEISQSLSKC---SSLEGLFLNNNNLSGK----------IPRWLGD--LTRLQYIIMPN 466 (689)
Q Consensus 406 ----~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~i~~~----------~~~~l~~--l~~L~~L~l~~ 466 (689)
..+++|++|++++|.+.+..+..+... ++|+.|++++|...+. .+..+.+ .++|++|++++
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 366899999999999988877766554 8999999999865532 1122322 36899999999
Q ss_pred CccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699 467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD 546 (689)
Q Consensus 467 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 546 (689)
|.+.+..|..+..+++|++|++++|.+++ ..|..+.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINK-----------IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccccccchhhcccCCCCCEEECCCCcccc-----------cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 99999999999999999999999998873 6677899999999999999999988899999999999999
Q ss_pred CcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCC
Q 040699 547 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL 606 (689)
Q Consensus 547 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 606 (689)
+++|++++..|..+..+++|+.|++++|++++..+..+..++.++.+++.+|++.|+||.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999988899999999999999999999987777778889999999999999999984
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.1e-35 Score=311.28 Aligned_cols=390 Identities=23% Similarity=0.237 Sum_probs=205.7
Q ss_pred CCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCC-------------CEEeCCC
Q 040699 80 FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHL-------------QELYMAD 145 (689)
Q Consensus 80 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L-------------~~L~L~~ 145 (689)
.++|++|++++|.+ +.+|..++. +++|++|++++| ..+. +|. .++++++| ++|++++
T Consensus 10 ~~~L~~L~l~~n~l---~~iP~~i~~-L~~L~~L~l~~n~~~~~----~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL---TEMPVEAEN-VKSKTEYYNAWSEWERN----APP-GNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHT----SCT-TSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccchhhhcccCch---hhCChhHhc-ccchhhhhccCCccccc----CCc-ccccchhcchhhhhhhhccCCCEEEecC
Confidence 45677777777766 556666555 666777776666 3333 443 45555543 5666666
Q ss_pred CcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccc
Q 040699 146 NDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225 (689)
Q Consensus 146 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 225 (689)
|.+++ +|.. .++|++|++++|.+++ ++. . .++|++|++++|.+++ ++ .+ .++|+.|++++|.+
T Consensus 81 ~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~-~---~~~L~~L~l~~n~l~~-l~--~~--~~~L~~L~L~~n~l--- 143 (454)
T 1jl5_A 81 LGLSS-LPEL---PPHLESLVASCNSLTE-LPE-L---PQSLKSLLVDNNNLKA-LS--DL--PPLLEYLGVSNNQL--- 143 (454)
T ss_dssp SCCSC-CCSC---CTTCSEEECCSSCCSS-CCC-C---CTTCCEEECCSSCCSC-CC--SC--CTTCCEEECCSSCC---
T ss_pred Ccccc-CCCC---cCCCCEEEccCCcCCc-ccc-c---cCCCcEEECCCCccCc-cc--CC--CCCCCEEECcCCCC---
Confidence 65553 2221 2456666666666552 443 1 2455666666555542 11 00 13455555544433
Q ss_pred ccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCC
Q 040699 226 ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRL 305 (689)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 305 (689)
.+ +| .+..+++|+.|++++|.+.+ +|. ..++|++|++++|.+++. +
T Consensus 144 -------------------------~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~- 189 (454)
T 1jl5_A 144 -------------------------EK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P- 189 (454)
T ss_dssp -------------------------SS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C-
T ss_pred -------------------------CC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c-
Confidence 22 33 36677788888888887774 443 235788888888887774 3
Q ss_pred CCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCC
Q 040699 306 PIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV 385 (689)
Q Consensus 306 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 385 (689)
.+..+++|++|++++|.++ .+|.. .++|+.|++++|.+. .+| .+..+++|++|++++|++. .+|. .++
T Consensus 190 ~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~ 257 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPP 257 (454)
T ss_dssp CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCT
T ss_pred cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----ccc
Confidence 5777888888888888877 34432 347888888888777 455 3777888888888888877 4553 246
Q ss_pred CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699 386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465 (689)
Q Consensus 386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 465 (689)
+|++|++++|.+.++.. ..++|+.|++++|.+.+.. . ..++|+.|++++|.+.+ ++. ..++|++|+++
T Consensus 258 ~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls 325 (454)
T 1jl5_A 258 SLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVS 325 (454)
T ss_dssp TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECC
T ss_pred ccCEEECCCCcccccCc----ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECC
Confidence 78888888887776432 2467788888888776531 1 12577788888877763 221 12477778888
Q ss_pred CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCccccc--CCcccccCCCCCC
Q 040699 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG--SIPSTFSNLKHVE 543 (689)
Q Consensus 466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 543 (689)
+|++++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..
T Consensus 326 ~N~l~~-lp~~---~~~L~~L~L~~N~l~------------~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~----- 381 (454)
T 1jl5_A 326 NNKLIE-LPAL---PPRLERLIASFNHLA------------EVPE---LPQNLKQLHVEYNPLREFPDIPESVED----- 381 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred CCcccc-cccc---CCcCCEEECCCCccc------------cccc---hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence 777775 3332 467777777777765 3444 35677778888777776 44444432
Q ss_pred EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC--CCCCc
Q 040699 544 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEW 583 (689)
Q Consensus 544 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~ 583 (689)
++.|...+.+|.. +++|+.|++++|++++ .+|.+
T Consensus 382 ---L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 382 ---LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp ---EECCC----------------------------------
T ss_pred ---hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 2234444445442 3678888888888876 55553
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=319.35 Aligned_cols=335 Identities=19% Similarity=0.171 Sum_probs=285.8
Q ss_pred CCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhh
Q 040699 253 IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG 332 (689)
Q Consensus 253 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 332 (689)
.+|..+ .+.++.|++++|.+.+..+.. +..+++|++|++++|.+.++.+..|.++++|++|++++|.++ .+|...+
T Consensus 25 ~ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 100 (477)
T 2id5_A 25 AVPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVF 100 (477)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSS
T ss_pred cCCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccc
Confidence 345443 358999999999998665544 688999999999999999988889999999999999999998 7777766
Q ss_pred hcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCcc
Q 040699 333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLM 412 (689)
Q Consensus 333 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 412 (689)
..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|++|++++|.+.+.....+..+++|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 77899999999999999888889999999999999999998 56666667799999999999999988888889999999
Q ss_pred EEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699 413 SLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492 (689)
Q Consensus 413 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 492 (689)
.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|++|++++|+++...+..|..+++|++|++++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 99999999988888889999999999999998877777766666799999999999997766789999999999999998
Q ss_pred cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 572 (689)
Q Consensus 493 ~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 572 (689)
+++ ..+..+..+++|+.|++++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+++
T Consensus 260 l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 260 IST-----------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCE-----------ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred CCc-----------cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 763 556678899999999999999999889999999999999999999998888888999999999999
Q ss_pred CCcCcCCCCCccccccccCcccccCCcCCCCC
Q 040699 573 YNNLSGEIPEWEAQFATFNENSYEGNTFLCGL 604 (689)
Q Consensus 573 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 604 (689)
+|++.|.++..+ .+.......+.++...|..
T Consensus 329 ~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 329 SNPLACDCRLLW-VFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp SSCEECSGGGHH-HHTTTTSSCCTTCCCBEEE
T ss_pred CCCccCccchHh-HHhhhhccccCccCceeCC
Confidence 999998876421 1222333455566655543
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=318.02 Aligned_cols=322 Identities=20% Similarity=0.166 Sum_probs=209.7
Q ss_pred EEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccC
Q 040699 266 YADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISM 345 (689)
Q Consensus 266 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 345 (689)
.++.++..+. .+|.. -.++++.|++++|.++++.+..|.++++|++|++++|.+++..|. .+..+++|+.|++++
T Consensus 15 ~v~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCC---CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCC
Confidence 3444444444 34432 234667777777777766666667777777777777776633333 333466777777777
Q ss_pred CcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccc
Q 040699 346 NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEI 425 (689)
Q Consensus 346 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 425 (689)
|.+.+..+..|.++++|++|++++|++. .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 7776555556667777777777777776 444444455677777777777776666666667777777777777766665
Q ss_pred cccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCccc
Q 040699 426 SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLI 505 (689)
Q Consensus 426 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~ 505 (689)
+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..+.......+|++|++++|.++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----------- 237 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT----------- 237 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-----------
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-----------
Confidence 566667777777777777776655666666777777777776655555544444556777777766665
Q ss_pred CCCc-hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCcc
Q 040699 506 GPIP-PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE 584 (689)
Q Consensus 506 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 584 (689)
.+| ..+..+++|+.|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|+.|++++|.++...+..+
T Consensus 238 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp -SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred -ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 233 456667777777777777766666666777777777777777776666677777777777777777766555555
Q ss_pred ccccccCcccccCCcCCCCCC
Q 040699 585 AQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 585 ~~~~~~~~~~~~~n~~~c~~~ 605 (689)
..+..++.+++.+||+.|+|+
T Consensus 317 ~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 317 HSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCGGGCCEEECCSSCEECSGG
T ss_pred CCCcccCEEEccCCCccCccc
Confidence 566666777777777777653
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8e-35 Score=308.14 Aligned_cols=386 Identities=22% Similarity=0.261 Sum_probs=172.2
Q ss_pred CCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCC
Q 040699 107 MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS 186 (689)
Q Consensus 107 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 186 (689)
.++|++|++++|..+. +|+ .++++++|++|++++|.+.+..|..++.+++|+.++++.|.. .+
T Consensus 10 ~~~L~~L~l~~n~l~~----iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~ 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTE----MPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQ 72 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HT
T ss_pred cccchhhhcccCchhh----CCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cC
Confidence 4566777777664454 664 567777777777777777666676666666542222221110 12
Q ss_pred CCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCE
Q 040699 187 IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEY 266 (689)
Q Consensus 187 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 266 (689)
+++|++++|.+++ ++. -.++|+.|++++|.+.+ +|. ..++|+.
T Consensus 73 l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------------lp~---~~~~L~~ 115 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-----------------------------LPE---LPQSLKS 115 (454)
T ss_dssp CSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-----------------------------CCC---CCTTCCE
T ss_pred CCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-----------------------------ccc---ccCCCcE
Confidence 3444444444332 110 01334444444443321 111 1134555
Q ss_pred EEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCC
Q 040699 267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMN 346 (689)
Q Consensus 267 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 346 (689)
|++++|.+.+ ++. ..++|++|++++|.+++ .+ .+.++++|++|++++|+++ .+|.. .++|+.|++++|
T Consensus 116 L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n 183 (454)
T 1jl5_A 116 LLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNN 183 (454)
T ss_dssp EECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSS
T ss_pred EECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCC
Confidence 5555554442 221 11455556665555554 22 3555566666666666555 34432 235666666666
Q ss_pred cCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccc
Q 040699 347 ALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS 426 (689)
Q Consensus 347 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 426 (689)
.+.+ +| .+.++++|+.|++++|++. .+|.. .++|++|++++|.+..+. .+..+++|++|++++|++.+. |
T Consensus 184 ~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l-~ 253 (454)
T 1jl5_A 184 QLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL-P 253 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSC-C
T ss_pred cCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcc-c
Confidence 6554 33 3556666666666666655 33321 235666666666655332 255566666666666665532 2
Q ss_pred ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccC
Q 040699 427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG 506 (689)
Q Consensus 427 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~ 506 (689)
. .+++|++|++++|.+.+ +|.. +++|++|++++|++++.. . ..++|++|++++|.+++
T Consensus 254 ~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~----------- 311 (454)
T 1jl5_A 254 D---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS----------- 311 (454)
T ss_dssp S---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-----------
T ss_pred c---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-----------
Confidence 2 13556666666666653 3332 255666666666655421 1 11456666666665541
Q ss_pred CCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC--CCCCcc
Q 040699 507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEWE 584 (689)
Q Consensus 507 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~ 584 (689)
++. -.++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|++++ .+|.++
T Consensus 312 -i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 312 -LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp -ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence 111 01355666666666654 3322 3556666666666653 333 24556666666666655 455544
Q ss_pred ccc-------------cccCcccccCCcCCC
Q 040699 585 AQF-------------ATFNENSYEGNTFLC 602 (689)
Q Consensus 585 ~~~-------------~~~~~~~~~~n~~~c 602 (689)
..+ +.++.+++.+|+...
T Consensus 380 ~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CEEECCC------------------------
T ss_pred HhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 444 678888999998765
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-33 Score=298.93 Aligned_cols=344 Identities=27% Similarity=0.338 Sum_probs=194.8
Q ss_pred CCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCccee
Q 040699 136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIF 215 (689)
Q Consensus 136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 215 (689)
++++.|+++++.++. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.... .+.++++|+.|
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT---PLANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccCh---hhcCCCCCCEE
Confidence 345555555555542 22 2445555555555555554 2332 455555555555555544211 13344444444
Q ss_pred eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEee
Q 040699 216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295 (689)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 295 (689)
++++|.+.+. + .+..+++|+.|++++|.+.+ ++. +..+++|++|++.
T Consensus 118 ~L~~n~l~~~-----------------------------~-~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 118 TLFNNQITDI-----------------------------D-PLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG 164 (466)
T ss_dssp ECCSSCCCCC-----------------------------G-GGTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE
T ss_pred ECCCCCCCCC-----------------------------h-HHcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC
Confidence 4444332110 0 13344556666666665553 222 3455555555554
Q ss_pred CCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCccccc
Q 040699 296 NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375 (689)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (689)
+ .+.+.. .+..++ +|+.|++++|.+.+. ..+..+++|++|++++|.+.+.
T Consensus 165 ~-~~~~~~--~~~~l~-------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 165 N-QVTDLK--PLANLT-------------------------TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp E-SCCCCG--GGTTCT-------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred C-cccCch--hhccCC-------------------------CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 2 222211 134444 455555555544422 2245555566666666555532
Q ss_pred chhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcC
Q 040699 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD 455 (689)
Q Consensus 376 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 455 (689)
.+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..
T Consensus 215 ~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 215 TP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 22 22355666666666665543 245556666666666666655433 6667777777777777764333 666
Q ss_pred CCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccc
Q 040699 456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPST 535 (689)
Q Consensus 456 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 535 (689)
+++|+.|++++|++.+..+ +..+++|++|++++|.+++ ..| +..+++|+.|++++|++++. ..
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-----------~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-----------ISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC-----------CGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC-----------chh--hccCccCCEeECCCCccCCc--hh
Confidence 7777777777777765433 6677777777777777652 222 56777788888888877754 45
Q ss_pred ccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699 536 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 536 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 578 (689)
+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7777888888888888877666 6777888888888887775
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-33 Score=298.78 Aligned_cols=238 Identities=25% Similarity=0.363 Sum_probs=139.8
Q ss_pred ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC
Q 040699 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS 337 (689)
Q Consensus 258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 337 (689)
+..+++|+.|+++ +.+.+. +. +..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+..+ ...+++
T Consensus 152 ~~~l~~L~~L~l~-~~~~~~-~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~ 222 (466)
T 1o6v_A 152 LSGLTSLQQLSFG-NQVTDL-KP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP---LGILTN 222 (466)
T ss_dssp GTTCTTCSEEEEE-ESCCCC-GG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG---GGGCTT
T ss_pred hccCCcccEeecC-CcccCc-hh--hccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc---ccccCC
Confidence 3456678888875 344433 22 578999999999999887642 35667777777777777764332 223566
Q ss_pred ceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699 338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE 417 (689)
Q Consensus 338 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (689)
|+.|++++|.+.+. ..+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+.+
T Consensus 223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~------------------ 279 (466)
T 1o6v_A 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISN------------------ 279 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCC------------------
T ss_pred CCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCc------------------
Confidence 66666666666542 245555666666666665552 222 2334555555555554443
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccc
Q 040699 418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 497 (689)
Q Consensus 418 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l 497 (689)
..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|++|++++|.+++
T Consensus 280 ------~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-- 345 (466)
T 1o6v_A 280 ------ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-- 345 (466)
T ss_dssp ------CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--
T ss_pred ------ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC--
Confidence 322 4455555555555555553322 4455556666666665554433 4555666666666665541
Q ss_pred ccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 498 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
+ ..+..+++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 346 ----------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 346 ----------V-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ----------C-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ----------c-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 1 345566666666666666665554 5666666666666666664
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-33 Score=298.07 Aligned_cols=353 Identities=19% Similarity=0.217 Sum_probs=198.2
Q ss_pred CCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCC
Q 040699 107 MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS 186 (689)
Q Consensus 107 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 186 (689)
+++|++|++++|.... ++ .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++ ++ +..+++
T Consensus 41 l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTT
T ss_pred cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCc
Confidence 6677777777763333 33 466677777777777777643 3 6677777777777777763 32 566777
Q ss_pred CCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCE
Q 040699 187 IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEY 266 (689)
Q Consensus 187 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 266 (689)
|++|++++|.++. + ++..+++|+.|++++|.+.+. .+..+++|+.
T Consensus 108 L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~l~~L~~ 152 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI-------------------------------DVSHNTQLTE 152 (457)
T ss_dssp CCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC-------------------------------CCTTCTTCCE
T ss_pred CCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee-------------------------------ccccCCcCCE
Confidence 7777777776653 2 255566666666666644321 0234455666
Q ss_pred EEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCC
Q 040699 267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMN 346 (689)
Q Consensus 267 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 346 (689)
|++++|...+.++ +..+++|+.|++++|.++++. +..+++|+.|++++|.+++ ++ +..+++|+.|++++|
T Consensus 153 L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 153 LDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSN 222 (457)
T ss_dssp EECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred EECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCC
Confidence 6666664433332 344555555555555555421 4455555555555555542 21 122445555555555
Q ss_pred cCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccc
Q 040699 347 ALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS 426 (689)
Q Consensus 347 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 426 (689)
.+++ +| +..+++|+.|++++|+++ .+|. ..+++|+.|++++| +|+.|++++|...+..|
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc
Confidence 5543 22 444555555555555554 2221 12444555544433 23344455555444333
Q ss_pred ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccC
Q 040699 427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG 506 (689)
Q Consensus 427 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~ 506 (689)
+..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|+++ +
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~-----------~ 332 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELT-----------E 332 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCS-----------C
T ss_pred --ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccc-----------c
Confidence 34455555555555554444442 1223333333222 45555555555544 3
Q ss_pred CCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCc
Q 040699 507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583 (689)
Q Consensus 507 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 583 (689)
++ +..+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|..+++++|.++|.+|..
T Consensus 333 -l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 333 -LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 22 7778888889998888875 25667778888888765 23456777899999999888864
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.6e-33 Score=294.28 Aligned_cols=354 Identities=18% Similarity=0.223 Sum_probs=171.3
Q ss_pred CCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCC
Q 040699 55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCS 134 (689)
Q Consensus 55 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~ 134 (689)
+++|++|++++|.+++. + .++.+++|++|++++|.+ .+ ++ +.. +++|++|++++|.... + .+++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l--~~-~~--~~~-l~~L~~L~Ls~N~l~~----~---~~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNI--TT-LD--LSQ-NTNLTYLACDSNKLTN----L---DVTP 104 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCC--SC-CC--CTT-CTTCSEEECCSSCCSC----C---CCTT
T ss_pred cCCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcC--Ce-Ec--ccc-CCCCCEEECcCCCCce----e---ecCC
Confidence 45555555555555432 1 344555555555555554 11 21 222 5555555555553222 2 2455
Q ss_pred CCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcce
Q 040699 135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKI 214 (689)
Q Consensus 135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 214 (689)
+++|++|++++|.+++. + ++.+++|++|++++|++++ + .+..+++|++|++++|...+.. .+..+++|+.
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~ 174 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTT 174 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc---ccccCCcCCE
Confidence 66666666666666542 2 5566666666666666653 3 2455666666666666432221 2333444444
Q ss_pred eeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEe
Q 040699 215 FYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294 (689)
Q Consensus 215 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 294 (689)
|++++|.+.+ +| +..+++|+.|++++|.+.+. + +..+++|+.|++
T Consensus 175 L~ls~n~l~~-----------------------------l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~L 219 (457)
T 3bz5_A 175 LDCSFNKITE-----------------------------LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDC 219 (457)
T ss_dssp EECCSSCCCC-----------------------------CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEEC
T ss_pred EECCCCccce-----------------------------ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEEC
Confidence 4444443321 00 22334455555555554432 1 244555555555
Q ss_pred eCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccc
Q 040699 295 VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG 374 (689)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (689)
++|.++++ + +..+++|++|++++|++++ +|. ..+++|+.|+++.| +|+.|++++|...+
T Consensus 220 s~N~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 220 SSNKLTEI-D--VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLI 278 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCC
T ss_pred cCCccccc-C--ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCC
Confidence 55555552 2 4455555555555555552 221 12344555544432 23444455554444
Q ss_pred cchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhc
Q 040699 375 EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG 454 (689)
Q Consensus 375 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~ 454 (689)
.+| +..+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 279 ~~~---------------------------~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------- 317 (457)
T 3bz5_A 279 YFQ---------------------------AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------- 317 (457)
T ss_dssp EEE---------------------------CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred ccc---------------------------ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence 443 23344555555555544333332 2234444443333
Q ss_pred CCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcc
Q 040699 455 DLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS 534 (689)
Q Consensus 455 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 534 (689)
++|++|++++|++++. + +..+++|+.|++++|++++ ++.|+.|++++|.+.+.
T Consensus 318 --~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------------------l~~L~~L~l~~n~l~g~--- 370 (457)
T 3bz5_A 318 --PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------------------FSSVGKIPALNNNFEAE--- 370 (457)
T ss_dssp --TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------------------CTTGGGSSGGGTSEEEE---
T ss_pred --ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------------------ccccccccccCCcEEec---
Confidence 4555666666666543 2 5556666666666665541 23444555566655543
Q ss_pred cccCCCCCCEEeCcCCcCCCCCchhc
Q 040699 535 TFSNLKHVESLDLSNNKLNGKIPHQL 560 (689)
Q Consensus 535 ~~~~l~~L~~L~L~~N~l~~~~~~~~ 560 (689)
..+..|+.+++++|+++|.+|..+
T Consensus 371 --~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 371 --GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --ceeeecCccccccCcEEEEcChhH
Confidence 233445556666666666665543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-33 Score=289.24 Aligned_cols=314 Identities=20% Similarity=0.206 Sum_probs=230.2
Q ss_pred cccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCC
Q 040699 257 FLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILP 336 (689)
Q Consensus 257 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 336 (689)
.+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.++ .+|...+..++
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 141 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred HhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCC
Confidence 3556778888888888877544433 577888888888888888877777788888888888888887 67776666678
Q ss_pred CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (689)
+|+.|++++|.+.+..+..|.++++|++|++++|+++ .++. ..+++|+.|++++|.+.+. ...++|++|++
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l 212 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 212 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceeeccccccccc-----CCCCcceEEEC
Confidence 8888888888888777777888888888888888887 4432 2367888888888877653 23567888888
Q ss_pred cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496 (689)
Q Consensus 417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 496 (689)
++|.+..... ...++|+.|++++|.+.+. .++..+++|++|++++|.+++..|..|..+++|++|++++|.++
T Consensus 213 ~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 285 (390)
T 3o6n_A 213 SHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-- 285 (390)
T ss_dssp CSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--
T ss_pred CCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--
Confidence 8888765432 2346788888888888743 56777888888888888888777788888888888888888776
Q ss_pred cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcC
Q 040699 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 576 (689)
Q Consensus 497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 576 (689)
.+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++
T Consensus 286 ----------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 286 ----------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ----------EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred ----------ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCc
Confidence 34555667788888888888887 4556677788888888888888754 2 55677888888888888
Q ss_pred cCCCCCccccccccCcccccCCcCCCCC
Q 040699 577 SGEIPEWEAQFATFNENSYEGNTFLCGL 604 (689)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 604 (689)
.|.... ..+..+....+.+++..|.+
T Consensus 352 ~~~~~~--~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 352 DCNSLR--ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp EHHHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred cchhHH--HHHHHHHhhcccccCceecc
Confidence 775432 12344445555666666654
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-33 Score=281.05 Aligned_cols=259 Identities=31% Similarity=0.545 Sum_probs=222.7
Q ss_pred CCceEEEccCCcCCc--cccccccCCCCCcEEeccC-CcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCcc
Q 040699 336 PSLHVFNISMNALDG--SIPSSFGNMNFLRILDLSN-NQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLM 412 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 412 (689)
.+++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..+. .+++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777776 6777788888888888884 777766766554 488888888888888777777788888888
Q ss_pred EEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCC-CCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699 413 SLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT-RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491 (689)
Q Consensus 413 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 491 (689)
+|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|++++..|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999998888888888899999999999999999888888888887 899999999999988888888887 999999888
Q ss_pred ccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699 492 NISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571 (689)
Q Consensus 492 ~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 571 (689)
.+++ ..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++
T Consensus 208 ~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 208 MLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp EEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred cccC-----------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 8763 6788899999999999999999876665 788999999999999999999999999999999999
Q ss_pred cCCcCcCCCCCccccccccCcccccCCcCCCCCCCCCC
Q 040699 572 AYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPIC 609 (689)
Q Consensus 572 ~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c 609 (689)
++|++++.+|.. ..++.++.+++.+||+.|+.|...|
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCC
Confidence 999999999987 6889999999999999999877666
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-32 Score=282.79 Aligned_cols=315 Identities=19% Similarity=0.185 Sum_probs=270.7
Q ss_pred CCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCce
Q 040699 260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339 (689)
Q Consensus 260 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 339 (689)
.+.+++.++++++.+. .+|..++..+++|++|+++++.+.+..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 3578999999999887 577777899999999999999999988888999999999999999998 56555556689999
Q ss_pred EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCC
Q 040699 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419 (689)
Q Consensus 340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (689)
.|++++|.+.+..+..|.++++|++|++++|++. .++...+.++++|++|++++|.+.+.. +..+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence 9999999999766667899999999999999998 666666777999999999999998763 556899999999999
Q ss_pred cccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccccc
Q 040699 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDL 499 (689)
Q Consensus 420 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l 499 (689)
.+.+. ...++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~---- 262 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK---- 262 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE----
T ss_pred ccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC----
Confidence 87643 3456899999999999844 432 357999999999999864 578899999999999998873
Q ss_pred CCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699 500 SCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579 (689)
Q Consensus 500 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 579 (689)
..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++..
T Consensus 263 -------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 263 -------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp -------EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred -------cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 567889999999999999999985 5666788999999999999999 4566778889999999999999855
Q ss_pred CCCccccccccCcccccCCcCCCCCCC
Q 040699 580 IPEWEAQFATFNENSYEGNTFLCGLPL 606 (689)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~n~~~c~~~~ 606 (689)
. +..++.++.+++.+||+.|+|..
T Consensus 334 ~---~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 334 K---LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp C---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred C---chhhccCCEEEcCCCCccchhHH
Confidence 3 45678899999999999998643
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-32 Score=299.02 Aligned_cols=317 Identities=20% Similarity=0.199 Sum_probs=256.9
Q ss_pred CCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhh
Q 040699 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD 333 (689)
Q Consensus 254 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 333 (689)
.+..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.+..+..|.++++|++|++++|.++ .+|...+.
T Consensus 67 p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 144 (597)
T 3oja_B 67 PAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144 (597)
T ss_dssp CTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhc
Confidence 3445667888999999999888655544 578899999999999999888888889999999999999998 77777766
Q ss_pred cCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccE
Q 040699 334 ILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS 413 (689)
Q Consensus 334 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 413 (689)
.+++|+.|++++|.+.+..|..|.++++|+.|++++|.+. .++. ..+++|+.|++++|.+.+. ...++|+.
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~l~~n~l~~l-----~~~~~L~~ 215 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEE 215 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEECCSSCCSEE-----ECCTTCSE
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhhcccCccccc-----cCCchhhe
Confidence 6889999999999998888888999999999999999987 4442 3378899999999987753 34678999
Q ss_pred EeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccc
Q 040699 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493 (689)
Q Consensus 414 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 493 (689)
|++++|.+....+.. .++|+.|++++|.+++ +.++..+++|+.|++++|.+.+..|..|..+++|++|++++|.+
T Consensus 216 L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 216 LDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp EECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred eeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 999999887554332 3689999999999885 46788899999999999999988888999999999999999988
Q ss_pred ccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccC
Q 040699 494 SGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573 (689)
Q Consensus 494 ~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 573 (689)
+ .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|++++.. +..+++|+.|++++
T Consensus 291 ~------------~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 291 V------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSH 354 (597)
T ss_dssp C------------EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCS
T ss_pred C------------CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeC
Confidence 7 35666677889999999999998 56777788899999999999998653 56678999999999
Q ss_pred CcCcCCCCCccccccccCcccccCCcCCCCC
Q 040699 574 NNLSGEIPEWEAQFATFNENSYEGNTFLCGL 604 (689)
Q Consensus 574 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 604 (689)
|++.|.+.. ..+..+....+.+++..|+.
T Consensus 355 N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 355 NDWDCNSLR--ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCChhHH--HHHHHHhhhccccccccCCc
Confidence 999876543 23445555566777777765
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.3e-30 Score=268.07 Aligned_cols=304 Identities=22% Similarity=0.303 Sum_probs=187.7
Q ss_pred CCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCce
Q 040699 260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339 (689)
Q Consensus 260 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 339 (689)
.+++++.|+++++.+.. ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++ .+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCS
T ss_pred hcccccEEEEeCCcccc-chh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcCC
Confidence 45566666666666653 333 3566677777777766665433 666667777777777665 333 233466677
Q ss_pred EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCC
Q 040699 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419 (689)
Q Consensus 340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (689)
+|++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+... +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 77777776664322 66667777777777654433333 3446677777777766665433 556667777777777
Q ss_pred cccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccccc
Q 040699 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDL 499 (689)
Q Consensus 420 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l 499 (689)
.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.++.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---- 257 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD---- 257 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC----
Confidence 6654332 5666677777777776664333 5666677777777776664433 6666777777777666551
Q ss_pred CCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699 500 SCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579 (689)
Q Consensus 500 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 579 (689)
+ +.+..+++|++|++++|++++. +.+..+++|++|++++|++++..|..+..+++|+.|++++|++++.
T Consensus 258 --------~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 258 --------I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp --------C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred --------C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 2 3456666677777777766643 3456667777777777777666666666667777777777776655
Q ss_pred CCCccccccccCcccccCCcC
Q 040699 580 IPEWEAQFATFNENSYEGNTF 600 (689)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~n~~ 600 (689)
.| +..++.++.+++.+|+.
T Consensus 327 ~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 327 RP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GG--GGGCTTCSEESSSCC--
T ss_pred cC--hhhhhccceeehhhhcc
Confidence 44 44566666666666653
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.4e-30 Score=266.09 Aligned_cols=285 Identities=21% Similarity=0.298 Sum_probs=244.9
Q ss_pred ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC
Q 040699 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS 337 (689)
Q Consensus 258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 337 (689)
+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+++. ..+..+++|++|++++|.+. .++. +..+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~-~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDI-SP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP--LANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG--GTTCTT
T ss_pred hhhcCCccEEEccCCccccc-hh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh--hccCCc
Confidence 56788999999999998854 43 68999999999999999875 35889999999999999998 4554 455899
Q ss_pred ceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699 338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE 417 (689)
Q Consensus 338 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (689)
|+.|++++|......+ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+... +..+++|+.|+++
T Consensus 134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207 (347)
T ss_dssp CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred eeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecc
Confidence 9999999997654444 4899999999999999998 5554 5569999999999999987554 7789999999999
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccc
Q 040699 418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 497 (689)
Q Consensus 418 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l 497 (689)
+|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 208 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~--- 278 (347)
T 4fmz_A 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS--- 278 (347)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC---
T ss_pred cCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC---
Confidence 999876644 8899999999999999985444 88999999999999999864 46889999999999999887
Q ss_pred ccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCc
Q 040699 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577 (689)
Q Consensus 498 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 577 (689)
.+ +.+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 279 ---------~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 279 ---------DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---------CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ---------CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 23 458889999999999999998899999999999999999999998776 788999999999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.2e-31 Score=292.13 Aligned_cols=313 Identities=19% Similarity=0.201 Sum_probs=270.8
Q ss_pred CCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceE
Q 040699 261 QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV 340 (689)
Q Consensus 261 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 340 (689)
+.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+++..+..+++|+.
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 478899999999887 567777899999999999999999988889999999999999999998 566666666899999
Q ss_pred EEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCc
Q 040699 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH 420 (689)
Q Consensus 341 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 420 (689)
|++++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++++|.+.+.. +..+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 999999999777777899999999999999998 566666667999999999999998764 4568999999999998
Q ss_pred ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699 421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS 500 (689)
Q Consensus 421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls 500 (689)
+.+ +...++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..+++|++|++++|.+++
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~----- 268 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK----- 268 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-----
T ss_pred ccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-----
Confidence 764 34567899999999999843 3322 3789999999999986 4678899999999999998873
Q ss_pred CCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCC
Q 040699 501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 580 (689)
Q Consensus 501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 580 (689)
..|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..
T Consensus 269 ------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 269 ------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp ------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred ------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 678889999999999999999996 5677788999999999999999 56777888999999999999998653
Q ss_pred CCccccccccCcccccCCcCCCCCC
Q 040699 581 PEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 581 ~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
+..++.+..+++.+||+.|+|.
T Consensus 341 ---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 ---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp ---CCTTCCCSEEECCSSCEEHHHH
T ss_pred ---hhhcCCCCEEEeeCCCCCChhH
Confidence 3467788999999999999763
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.6e-31 Score=267.84 Aligned_cols=255 Identities=29% Similarity=0.469 Sum_probs=212.2
Q ss_pred CCcCEEEccCCcCcc--cCChhhhhcCCCceEEEccC-CcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCC
Q 040699 311 KRLGMLDISNNNFRG--HIPLEIGDILPSLHVFNISM-NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNL 387 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 387 (689)
.+++.|++++|.+.+ .+|..+.. +++|+.|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+. .+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence 457777777777776 66665544 77888888884 777777788888888888888888888766666544 48888
Q ss_pred CEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCC-CCCEEECCCCCCCCcCChhhcCCCCCcEEEcCC
Q 040699 388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCS-SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466 (689)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 466 (689)
++|++++|.+.+..+..+..+++|++|++++|++.+..|..+..++ +|++|++++|.+.+..|..+..+. |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 8888888888877778888888999999999988888888888887 899999999999888888888887 99999999
Q ss_pred CccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699 467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD 546 (689)
Q Consensus 467 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 546 (689)
|.+++..|..|..+++|++|++++|.+++ . ++.+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF-----------D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECC-----------B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceee-----------e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 99998888899999999999999998762 3 33477889999999999999989999999999999999
Q ss_pred CcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 547 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 547 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
+++|++++.+|.. ..+++|+.+++++|+..|..|
T Consensus 275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999888886 778999999999998555444
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-29 Score=257.05 Aligned_cols=288 Identities=18% Similarity=0.198 Sum_probs=122.6
Q ss_pred CCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEE
Q 040699 263 DLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342 (689)
Q Consensus 263 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 342 (689)
+++.++++++.+. .+|.. -.+.++.|++++|.+++..+..+.++++|++|++++|.+++..|..+ ..+++|+.|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCcc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEE
Confidence 3455555555444 23321 12344555555555554444444445555555555555442222222 2244444444
Q ss_pred ccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc--cCcccccCCCCccEEeccCCc
Q 040699 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG--HMFSRNFNLANLMSLQLEGNH 420 (689)
Q Consensus 343 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~ 420 (689)
+++|.++. +|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 44444442 222221 34444444444444 3333333344444444444444432 233334444444444444444
Q ss_pred ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699 421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS 500 (689)
Q Consensus 421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls 500 (689)
+... |..+. ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 183 l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------ 253 (330)
T 1xku_A 183 ITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------ 253 (330)
T ss_dssp CCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS------
T ss_pred cccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc------
Confidence 4322 21111 34444444444444443444444444444444444444444444444444444444444443
Q ss_pred CCcccCCCchhhccccccceEeccCcccccCCcccccC------CCCCCEEeCcCCcCCC--CCchhccCCCCCCEEecc
Q 040699 501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN------LKHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVA 572 (689)
Q Consensus 501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~ 572 (689)
.+|..+..+++|++|++++|++++..+..|.. ...++.|++++|++.. ..|..|..+.+++.++++
T Consensus 254 ------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 254 ------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp ------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred ------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 33444444444444444444444433333322 1344444444444432 233344444444444444
Q ss_pred CC
Q 040699 573 YN 574 (689)
Q Consensus 573 ~N 574 (689)
+|
T Consensus 328 ~N 329 (330)
T 1xku_A 328 NY 329 (330)
T ss_dssp --
T ss_pred cc
Confidence 44
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.6e-30 Score=260.64 Aligned_cols=267 Identities=19% Similarity=0.218 Sum_probs=134.9
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEE
Q 040699 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESL 390 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 390 (689)
+++++|++++|.++ .++...+..+++|+.|++++|.+++..|..|.++++|++|++++|++. .+|...+ ++|++|
T Consensus 54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence 34555555555554 232222333455555555555555444555555555555555555554 4444432 455555
Q ss_pred EccCCcCCccCcccccCCCCccEEeccCCcccc--cccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699 391 VLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIG--EISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH 468 (689)
Q Consensus 391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 468 (689)
++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCc
Confidence 555555555544455555555555555555532 334444444 55555555555553 333222 455555555555
Q ss_pred cccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699 469 LEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548 (689)
Q Consensus 469 l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 548 (689)
+++..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRM-----------IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCC-----------CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCc-----------CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 555555555555555555555555441 33334555555555555555555 344445555555555555
Q ss_pred CCcCCCCCchhccC------CCCCCEEeccCCcCc--CCCCCccccccccCcccccCC
Q 040699 549 NNKLNGKIPHQLVE------LKTLEVFSVAYNNLS--GEIPEWEAQFATFNENSYEGN 598 (689)
Q Consensus 549 ~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~~~~n 598 (689)
+|++++..+..|.. ..+|+.+++++|++. +..|..+..++.++.+++.+|
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 55555444444433 234555555555554 333444444445555554444
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.4e-30 Score=260.72 Aligned_cols=288 Identities=19% Similarity=0.218 Sum_probs=241.1
Q ss_pred CCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEE
Q 040699 263 DLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342 (689)
Q Consensus 263 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 342 (689)
.++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+.++++|++|++++|.+++..|. .+..+++|+.|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEE
Confidence 5788888888876 566542 47899999999999988788899999999999999999844444 445588999999
Q ss_pred ccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc--cCcccccCCCCccEEeccCCc
Q 040699 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG--HMFSRNFNLANLMSLQLEGNH 420 (689)
Q Consensus 343 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~ 420 (689)
+++|.+.. +|..+. ++|++|++++|++. .++...+.++++|++|++++|.+.. ..+..+..+ +|+.|++++|.
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 99999884 444443 78999999999998 7887777889999999999999863 566677777 99999999999
Q ss_pred ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699 421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS 500 (689)
Q Consensus 421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls 500 (689)
+.+. |..+. ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 184 l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------ 254 (332)
T 2ft3_A 184 LTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS------ 254 (332)
T ss_dssp CSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC------
T ss_pred CCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe------
Confidence 8764 44333 78999999999999888889999999999999999999888889999999999999999887
Q ss_pred CCcccCCCchhhccccccceEeccCcccccCCcccccC------CCCCCEEeCcCCcCC--CCCchhccCCCCCCEEecc
Q 040699 501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN------LKHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVA 572 (689)
Q Consensus 501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~ 572 (689)
.+|..+..+++|++|++++|++++..+..|.. ...|+.|++++|++. ...|..|..+++|+.++++
T Consensus 255 ------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 255 ------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp ------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred ------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 67888999999999999999999887777765 367999999999998 6788889999999999999
Q ss_pred CCc
Q 040699 573 YNN 575 (689)
Q Consensus 573 ~N~ 575 (689)
+|.
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 884
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=257.90 Aligned_cols=289 Identities=20% Similarity=0.207 Sum_probs=239.9
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699 287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366 (689)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 366 (689)
.+++.++++++.++.+. ..+ .+.++.|++++|.++ .++...+..+++|+.|++++|.+.+..|..|.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccC-ccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 36889999988887643 222 368999999999998 56655556689999999999999988899999999999999
Q ss_pred ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccc--cccccccCCCCCCEEECCCCC
Q 040699 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIG--EISQSLSKCSSLEGLFLNNNN 444 (689)
Q Consensus 367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~ 444 (689)
+++|+++ .+|...+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999998 7887664 689999999999998888888999999999999999853 667788999999999999999
Q ss_pred CCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEecc
Q 040699 445 LSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLS 524 (689)
Q Consensus 445 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~ 524 (689)
+.. +|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++ ..+..+..+++|++|+++
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------VDNGSLANTPHLRELHLN 248 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------ECTTTGGGSTTCCEEECC
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-----------eChhhccCCCCCCEEECC
Confidence 984 555443 799999999999998888899999999999999998763 455678899999999999
Q ss_pred CcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccC------CCCCCEEeccCCcCcC--CCCCccccccccCccccc
Q 040699 525 HNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLSG--EIPEWEAQFATFNENSYE 596 (689)
Q Consensus 525 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~~~~~~~~~~~ 596 (689)
+|+++ .+|..+..+++|++|++++|++++..+..|.. .++++.+++++|++.. ..|..+..+..++.+++.
T Consensus 249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 99998 67788899999999999999999877777754 3788899999999864 445555566677777777
Q ss_pred CC
Q 040699 597 GN 598 (689)
Q Consensus 597 ~n 598 (689)
+|
T Consensus 328 ~N 329 (330)
T 1xku_A 328 NY 329 (330)
T ss_dssp --
T ss_pred cc
Confidence 66
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=269.37 Aligned_cols=292 Identities=23% Similarity=0.278 Sum_probs=241.1
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 391 (689)
..+.++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3567889998888 8887654 58999999999999888899999999999999999998 77777888899999999
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCCCccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPNNHLE 470 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~ 470 (689)
+++|.++.+....+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|.++++|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 9999999988888999999999999999999888889999999999999995 555445568999999999999999998
Q ss_pred cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550 (689)
Q Consensus 471 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 550 (689)
.. | .+..+++|++|++++|.+++ ..|..|.++++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus 199 ~~-~-~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 199 EI-P-NLTPLIKLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp SC-C-CCTTCSSCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cc-c-ccCCCcccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 54 4 47889999999999998773 56788999999999999999999999999999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCc
Q 040699 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 628 (689)
Q Consensus 551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 628 (689)
++++..+..+..+++|+.|++++|++.|.+.- |+..+. .... ..+. . ....|..|+..++..+...+.+..
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~--~~~~-~~~~-~---~~~~C~~P~~l~g~~l~~l~~~~~ 337 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI--KDMA-PSNT-A---CCARCNTPPNLKGRYIGELDQNYF 337 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHH--HTTS-CSSC-S---CCCBEEESTTTTTCBCC----CCS
T ss_pred CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHH--Hhcc-ccCC-c---cccCCCChhHhcCccHhHhhhhhc
Confidence 99988888899999999999999999998763 222111 1100 0000 0 112577777777776666555443
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.8e-29 Score=267.28 Aligned_cols=253 Identities=19% Similarity=0.211 Sum_probs=225.8
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 391 (689)
....++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence 3567888888887 7887553 58999999999999888999999999999999999998 67777777899999999
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCCCccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPNNHLE 470 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~ 470 (689)
+++|.+....+..+..+++|++|++++|++....+..|..+++|++|++++| .+....+..|.++++|++|++++|+++
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999999988888999999999999999999888889999999999999995 555444567999999999999999998
Q ss_pred cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550 (689)
Q Consensus 471 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 550 (689)
+. | .+..+++|++|++++|.+++ ..|..|.++++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cc-c-cccccccccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 65 3 57889999999999998773 66888999999999999999999998999999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
++++..+..+..+++|+.|++++|++.|.+.-
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99988888889999999999999999998764
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-32 Score=294.73 Aligned_cols=359 Identities=17% Similarity=0.145 Sum_probs=177.0
Q ss_pred CCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeec---CcccccCCCCcceeeccCCcccccccccccCccCc
Q 040699 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI---SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236 (689)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 236 (689)
++|++|++++|.++.......+..+++|++|++++|.++... ....+..+++|+.|++++|.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-------------- 68 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-------------- 68 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--------------
Confidence 457777777777763222212556777777777777665211 012234445555555555544
Q ss_pred cccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCC----CCcEEEeeCCCCCC----CCCCCCC
Q 040699 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNT----KLRQLSLVNDSLAG----PFRLPIH 308 (689)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~ 308 (689)
.+..+..++..++ +|++|++++|.++. ..+..+.
T Consensus 69 --------------------------------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 110 (461)
T 1z7x_W 69 --------------------------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110 (461)
T ss_dssp --------------------------------------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred --------------------------------------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence 3322222222333 34444544444442 1233344
Q ss_pred CCCCcCEEEccCCcCcccCChhhhh----cCCCceEEEccCCcCCccc----cccccCCCCCcEEeccCCcccccchhhh
Q 040699 309 SHKRLGMLDISNNNFRGHIPLEIGD----ILPSLHVFNISMNALDGSI----PSSFGNMNFLRILDLSNNQLTGEIPEHL 380 (689)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 380 (689)
.+++|++|++++|.+++..+..+.. ..++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 5555555555555554322222221 1234566666665555322 3344455566666666665543222222
Q ss_pred hc----CCCCCCEEEccCCcCCccC----cccccCCCCccEEeccCCcccccc-----cccccCCCCCCEEECCCCCCCC
Q 040699 381 AV----GCVNLESLVLSNNSLKGHM----FSRNFNLANLMSLQLEGNHFIGEI-----SQSLSKCSSLEGLFLNNNNLSG 447 (689)
Q Consensus 381 ~~----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~i~~ 447 (689)
.. ..++|++|++++|.+.+.. +..+..+++|++|++++|.+.... +..+..+++|++|++++|.++.
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 21 2345666666666555432 233344566666666666554321 1222245566666666665553
Q ss_pred c----CChhhcCCCCCcEEEcCCCccccCCccccc-----CCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699 448 K----IPRWLGDLTRLQYIIMPNNHLEGPIPVEFC-----QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI 518 (689)
Q Consensus 448 ~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L 518 (689)
. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. -...++..+..+++|
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-------CCSHFSSVLAQNRFL 343 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-------GHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH-------HHHHHHHHHhhCCCc
Confidence 2 344455556666666666655433222222 124666666666655420 000123444555666
Q ss_pred ceEeccCcccccCCcccccC-----CCCCCEEeCcCCcCCC----CCchhccCCCCCCEEeccCCcCc
Q 040699 519 QTLNLSHNDLTGSIPSTFSN-----LKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLS 577 (689)
Q Consensus 519 ~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~ 577 (689)
++|++++|.+++..+..+.. .++|++|++++|+++. .+|..+..+++|+.|++++|+++
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 66666666655433332221 4566666666666653 44555555666666666666554
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.2e-32 Score=295.21 Aligned_cols=160 Identities=23% Similarity=0.180 Sum_probs=81.9
Q ss_pred CCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCCCcCChhhc-----CCCCCcEEEcCCCccccC----Cc
Q 040699 408 LANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLSGKIPRWLG-----DLTRLQYIIMPNNHLEGP----IP 474 (689)
Q Consensus 408 l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~ 474 (689)
+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44444444444444332 233444455555555555555432222221 124566666666655543 23
Q ss_pred ccccCCCCCcEEeccccccccccccCCCcccCCCchhhc-----cccccceEeccCccccc----CCcccccCCCCCCEE
Q 040699 475 VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIG-----NLTRIQTLNLSHNDLTG----SIPSTFSNLKHVESL 545 (689)
Q Consensus 475 ~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L 545 (689)
..+..+++|++|++++|.+++ ..+..+. ..++|++|++++|.+++ .+|..+..+++|++|
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~-----------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLED-----------AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHH-----------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHhhCCCccEEEccCCcccc-----------ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 444555666666666665542 1111121 14567777777776664 455666666777777
Q ss_pred eCcCCcCCCCCchhcc-----CCCCCCEEeccCCcCcC
Q 040699 546 DLSNNKLNGKIPHQLV-----ELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 546 ~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~ 578 (689)
++++|+++......+. ....|+.|++.++.+..
T Consensus 404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 7777776643211111 13456777776665543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=259.38 Aligned_cols=249 Identities=26% Similarity=0.263 Sum_probs=218.0
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEec
Q 040699 288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL 367 (689)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 367 (689)
....++..+..++.+. ..+ .++++.|++++|.++ .++...+..+++|+.|++++|.+.+..+..|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP-DGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCC-SCC--CTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCC-CCC--CCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567788887777643 322 268999999999998 555555666899999999999999888899999999999999
Q ss_pred cCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCc-ccccccccccCCCCCCEEECCCCCCC
Q 040699 368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH-FIGEISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 368 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
++|+++ .++...+..+++|++|++++|.+.......|..+++|++|++++|. +....+..|..+++|++|++++|.+.
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999998 8888888889999999999999999888899999999999999954 45455568999999999999999998
Q ss_pred CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526 (689)
Q Consensus 447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 526 (689)
.+| .+..+++|++|++++|++++..|..|..+++|++|++++|.++. ..+..|.++++|+.|+|++|
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-----------IERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-----------ECTTSSTTCTTCCEEECTTS
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-----------EChhhhcCCCCCCEEECCCC
Confidence 445 47889999999999999999989999999999999999998873 56778999999999999999
Q ss_pred ccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 527 DLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 527 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
++++..+..|..+++|+.|+|++|++..
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCccChhHhccccCCCEEEcCCCCccC
Confidence 9998888889999999999999999874
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.9e-29 Score=251.24 Aligned_cols=286 Identities=19% Similarity=0.228 Sum_probs=213.8
Q ss_pred CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCccccc--chhhhhcCCCCCCEEE
Q 040699 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE--IPEHLAVGCVNLESLV 391 (689)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~ 391 (689)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|.++++|++|++++|.+... .+.... ++++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence 35666666665 566543 24677777777777755555677778888888888777621 133333 477888888
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~ 470 (689)
+++|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus 85 Ls~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 888877653 3346778888888888888776554 57888889999999999888778888888999999999999887
Q ss_pred c-CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcC
Q 040699 471 G-PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549 (689)
Q Consensus 471 ~-~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 549 (689)
+ ..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred cccchhHHhhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 6 577888899999999999988763 5577888999999999999999988887899999999999999
Q ss_pred CcCCCCCchhccCC-CCCCEEeccCCcCcCCCCC-cccc-ccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCC
Q 040699 550 NKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPE-WEAQ-FATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNE 623 (689)
Q Consensus 550 N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~-~~~~-~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~ 623 (689)
|++++..|..+..+ ++|+.|++++|++.|.++. ++.. +..........+.. .|..|....|.++.++
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~~~~ 302 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPVLSL 302 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBGGGC
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCceeeee
Confidence 99999899888888 4999999999999987652 1111 12222333333333 5666776666655444
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=255.69 Aligned_cols=281 Identities=17% Similarity=0.144 Sum_probs=218.2
Q ss_pred CCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEE
Q 040699 286 NTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRIL 365 (689)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 365 (689)
++.....+.+++.++.+.. .+ .++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3444455666666665422 22 247888888888887 5555445557888888888888887777788888899999
Q ss_pred eccCCcccccchhhhhcCCCCCCEEEccCCcCCccCc-ccccCCCCccEEeccCC-cccccccccccCCCCCCEEECCCC
Q 040699 366 DLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF-SRNFNLANLMSLQLEGN-HFIGEISQSLSKCSSLEGLFLNNN 443 (689)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n 443 (689)
++++|+++ .++...+.++++|++|++++|.+.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|
T Consensus 106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99999888 7777777778899999999998887666 57788899999999988 466666778888999999999999
Q ss_pred CCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCch---hhccccccce
Q 040699 444 NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPP---KIGNLTRIQT 520 (689)
Q Consensus 444 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~---~~~~l~~L~~ 520 (689)
.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++ ..+. .....+.++.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----------~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-----------FHFSELSTGETNSLIKK 253 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-----------CCCC------CCCCCCE
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-----------ccccccccccccchhhc
Confidence 9988778889899999999999999875544445668899999999998763 1111 1234567788
Q ss_pred EeccCccccc----CCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 521 LNLSHNDLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 521 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
++++++.+++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++.|.+|.
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 8888887765 3677889999999999999999955444568899999999999999998873
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.5e-28 Score=255.85 Aligned_cols=248 Identities=23% Similarity=0.230 Sum_probs=161.4
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEecc
Q 040699 289 LRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS 368 (689)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 368 (689)
...++..+..++.+. ..+ .+++++|++++|.+++ ++...+..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccC-CCC--CCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345555555555432 222 2466777777777763 333333446677777777777776666677777777777777
Q ss_pred CCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCC-cccccccccccCCCCCCEEECCCCCCCC
Q 040699 369 NNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN-HFIGEISQSLSKCSSLEGLFLNNNNLSG 447 (689)
Q Consensus 369 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 447 (689)
+|+++ .++...+.++++|++|++++|.+..+....+..+++|+.|++++| .+....+..|..+++|++|++++|.+.+
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 77776 666666666777777777777777666666677777777777763 3333344456677777777777777663
Q ss_pred cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcc
Q 040699 448 KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND 527 (689)
Q Consensus 448 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 527 (689)
+| .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++ ..+..|.++++|+.|+|++|+
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-----------IERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSC
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-----------ECHHHhcCCCCCCEEECCCCc
Confidence 23 35666777777777777776667777777777777777766652 445566677777777777777
Q ss_pred cccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 528 LTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 528 l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
+++..+..|..+++|++|+|++|++..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCccChHHhccccCCCEEEccCCCcCC
Confidence 776666666777777777777776653
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=254.90 Aligned_cols=279 Identities=20% Similarity=0.194 Sum_probs=239.9
Q ss_pred CCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCC
Q 040699 309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE 388 (689)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 388 (689)
.++.....+.+++.++ .+|..++ ++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence 3455667899999998 8887654 58999999999999877778999999999999999998 66666667799999
Q ss_pred EEEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCC
Q 040699 389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPN 466 (689)
Q Consensus 389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~ 466 (689)
+|++++|.+++.....+.++++|++|++++|++....+ ..+..+++|++|++++| .+.+..+..|.++++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999998887778999999999999999986655 57899999999999999 57766678899999999999999
Q ss_pred CccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh-hccccccceEeccCcccccCCccccc---CCCCC
Q 040699 467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK-IGNLTRIQTLNLSHNDLTGSIPSTFS---NLKHV 542 (689)
Q Consensus 467 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L 542 (689)
|++++..|..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+++..+..+. ....+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCST------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCcCccCHHHHhccccCCeecCCCCccc------------cchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 9999888999999999999999999876 34443 55689999999999999976655443 46789
Q ss_pred CEEeCcCCcCCC----CCchhccCCCCCCEEeccCCcCcCCCCCc-cccccccCcccccCCcCCCCCC
Q 040699 543 ESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSGEIPEW-EAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 543 ~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
+.++++++.+++ .+|..+..+++|+.|++++|.++ .+|.. +..++.++.+++.+|++.|+|+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999999886 36778899999999999999999 45544 5788999999999999999986
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.1e-28 Score=242.54 Aligned_cols=267 Identities=20% Similarity=0.228 Sum_probs=222.0
Q ss_pred ceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699 338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE 417 (689)
Q Consensus 338 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (689)
-+.++.+++.++. +|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 3678888888874 45433 468999999999998 6777777779999999999999999888899999999999999
Q ss_pred CCc-ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699 418 GNH-FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496 (689)
Q Consensus 418 ~n~-~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 496 (689)
+|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS- 167 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-
Confidence 997 777778889999999999999999998888899999999999999999998888889999999999999998872
Q ss_pred cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcC
Q 040699 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 576 (689)
Q Consensus 497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 576 (689)
..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 168 ----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 168 ----------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ----------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 4445688999999999999999988899999999999999999999988888899999999999999999
Q ss_pred cCCCCCccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 040699 577 SGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 627 (689)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~ 627 (689)
.|.++... .+..+.......+.. .|..|+...+..+......+
T Consensus 238 ~c~~~~~~-~~~~l~~~~~~~~~~-------~c~~p~~l~g~~l~~l~~~~ 280 (285)
T 1ozn_A 238 VCDCRARP-LWAWLQKFRGSSSEV-------PCSLPQRLAGRDLKRLAAND 280 (285)
T ss_dssp ECSGGGHH-HHHHHHHCCSEECCC-------BEEESGGGTTCBGGGSCGGG
T ss_pred cCCCCcHH-HHHHHHhcccccCcc-------ccCCchHhCCcChhhcCHHH
Confidence 98876421 223333333444444 45566666666555554443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.6e-28 Score=244.11 Aligned_cols=279 Identities=23% Similarity=0.253 Sum_probs=211.2
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCcc--ccccccCCCCCcEEec
Q 040699 290 RQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS--IPSSFGNMNFLRILDL 367 (689)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l 367 (689)
+.++.+++.++.+.. .+ .+++++|++++|.++ .+|..++..+++|+.|++++|.+... .+..+.++++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 345555555544322 11 246777777777776 66666656677777888777777633 2556667788888888
Q ss_pred cCCcccccchhhhhcCCCCCCEEEccCCcCCccCc-ccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699 368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF-SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 368 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
++|.+. .++.. +..+++|++|++++|.+.+... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 888877 56655 3458888888888888877655 56778888899999988888888888888899999999999887
Q ss_pred C-cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccC
Q 040699 447 G-KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH 525 (689)
Q Consensus 447 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 525 (689)
+ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++ ..+..+..+++|+.|++++
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-----------LDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-----------CCSGGGTTCTTCCEEECTT
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-----------cChhhccCcccCCEeECCC
Confidence 5 577888889999999999999988888889999999999999998763 4455688899999999999
Q ss_pred cccccCCcccccCC-CCCCEEeCcCCcCCCCCc--hhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699 526 NDLTGSIPSTFSNL-KHVESLDLSNNKLNGKIP--HQLVELKTLEVFSVAYNNLSGEIPEWEA 585 (689)
Q Consensus 526 n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 585 (689)
|++++..|..+..+ ++|++|++++|++++..+ .....+...+.+.+..+.+.|..|..+.
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 99998888889888 499999999999986532 1122233445566777888888887553
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.9e-27 Score=236.80 Aligned_cols=254 Identities=21% Similarity=0.221 Sum_probs=216.9
Q ss_pred CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS 393 (689)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 393 (689)
++++.+++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 67889998887 777654 468999999999999887888999999999999999998 5655566679999999999
Q ss_pred CCc-CCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC
Q 040699 394 NNS-LKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP 472 (689)
Q Consensus 394 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~ 472 (689)
+|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 997 8888788899999999999999999988888899999999999999999977777899999999999999999988
Q ss_pred CcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699 473 IPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552 (689)
Q Consensus 473 ~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 552 (689)
.+..|..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CHHHhcCccccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 77789999999999999998763 5678899999999999999999988778899999999999999999
Q ss_pred CCCCchhccCCCCCCEEeccCCcCcCCCCCcc
Q 040699 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE 584 (689)
Q Consensus 553 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 584 (689)
....+.. .....++.+....+.+.|..|+.+
T Consensus 238 ~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 238 VCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp ECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 8654421 111234445577888888888754
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.8e-30 Score=284.03 Aligned_cols=411 Identities=15% Similarity=0.066 Sum_probs=218.2
Q ss_pred hhhcCCCCCCEEECCCCCC--------------CCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCC-CC-CCCeeeC
Q 040699 25 QELHSFTNLEYLSLDFSSL--------------HISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPH-FK-SLEHLDM 88 (689)
Q Consensus 25 ~~~~~~~~L~~L~L~~~~i--------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~-~L~~L~L 88 (689)
..+..+++|++|+++++.. ....+..+...+++|++|+|++|.+++.... .+.. ++ +|++|++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEEC
Confidence 3456677777777755421 1111233443478888888888776543221 2333 23 3888888
Q ss_pred CCCccccCCccchhhhhcCCCccEEECCCCCC-CCCCCccCccccCCCCCCCEEeCCCCcCcc----CCCccccCCCCCc
Q 040699 89 SSTRIALNTSFLQIIGESMPSLKYLSLSNSTR-GTNSSRILDQGLCSLMHLQELYMADNDLRG----SLPWCLANMTSLR 163 (689)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~ 163 (689)
++|.-. .......+...+++|++|+|++|.. +....+++. ....+++|++|++++|.+++ .++..+..+++|+
T Consensus 146 ~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 146 DKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp ESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred cCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 777520 1212222333478888888888732 221111221 34567888888888887762 2334456778888
Q ss_pred EEEccceeeeeecCcccccCCCCCCEEeccCCccee--ecCcccccCCCCcceeeccCCcccccccccccCccCccccce
Q 040699 164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI--PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241 (689)
Q Consensus 164 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 241 (689)
+|++++|.+. .++. .+..+++|++|+++...... ......+..+++|+.+++.++.
T Consensus 224 ~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------------- 281 (592)
T 3ogk_B 224 SVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-------------------- 281 (592)
T ss_dssp EEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--------------------
T ss_pred EEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--------------------
Confidence 8888888776 4554 57778888888887532110 0011122233333333332210
Q ss_pred EeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCC
Q 040699 242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNN 321 (689)
Q Consensus 242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 321 (689)
...+|..+..+++|+.|++++|.+.+.....+ +..+++|++|+++ +
T Consensus 282 ---------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~------------------------~~~~~~L~~L~L~-~ 327 (592)
T 3ogk_B 282 ---------PNEMPILFPFAAQIRKLDLLYALLETEDHCTL------------------------IQKCPNLEVLETR-N 327 (592)
T ss_dssp ---------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH------------------------HTTCTTCCEEEEE-G
T ss_pred ---------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH------------------------HHhCcCCCEEecc-C
Confidence 01122223333444444444444332222122 2344555555555 2
Q ss_pred cCcccCChhhhhcCCCceEEEccC-----------CcCCcc-ccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699 322 NFRGHIPLEIGDILPSLHVFNISM-----------NALDGS-IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389 (689)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 389 (689)
.+.+.....+...+++|++|++++ +.+++. .+..+..+++|++|+++.+.+++..+..+...+++|+.
T Consensus 328 ~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 328 VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE
T ss_pred ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE
Confidence 222222223333455666666662 333322 11223446667777776666665555555555667777
Q ss_pred EEcc----CCcCCccC-----cccccCCCCccEEeccCCc--ccccccccc-cCCCCCCEEECCCCCCCC-cCChhhcCC
Q 040699 390 LVLS----NNSLKGHM-----FSRNFNLANLMSLQLEGNH--FIGEISQSL-SKCSSLEGLFLNNNNLSG-KIPRWLGDL 456 (689)
Q Consensus 390 L~l~----~n~l~~~~-----~~~~~~l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~L~~n~i~~-~~~~~l~~l 456 (689)
|+++ .|.+++.. ...+.++++|+.|++++|. +++.....+ ..+++|++|++++|.+++ ..+..+.++
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 487 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence 7774 44555421 1123456777777775433 333333333 336777777777777764 334455667
Q ss_pred CCCcEEEcCCCccccC-CcccccCCCCCcEEeccccccc
Q 040699 457 TRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNIS 494 (689)
Q Consensus 457 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~ 494 (689)
++|++|++++|.+++. .+.....+++|++|++++|+++
T Consensus 488 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 7788888877776543 2333456777888888877765
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=9.5e-30 Score=281.69 Aligned_cols=298 Identities=10% Similarity=0.053 Sum_probs=169.6
Q ss_pred CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCC---CCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCc
Q 040699 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLA---GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL 338 (689)
Q Consensus 262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 338 (689)
++|+.|++++|.+.+ ++. .+..+++|++|++...... ......+..+++|+.++++++... .+|. ....+++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L 295 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQI 295 (592)
T ss_dssp TTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGC
T ss_pred CCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCC
Confidence 444444444444432 222 2345555555555432111 112234455666777776664332 3333 23335677
Q ss_pred eEEEccCCcCCcccc-ccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC-----------CcCCccCccc-c
Q 040699 339 HVFNISMNALDGSIP-SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN-----------NSLKGHMFSR-N 405 (689)
Q Consensus 339 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~~~~-~ 405 (689)
+.|++++|.+++... ..+..+++|++|+++ +.+.+.........+++|++|++++ +.+++..... .
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 777777776543322 335667777777777 4444344444445577777777772 4444332222 2
Q ss_pred cCCCCccEEeccCCcccccccccccC-CCCCCEEECC----CCCCCCc-----CChhhcCCCCCcEEEcCCCc--cccCC
Q 040699 406 FNLANLMSLQLEGNHFIGEISQSLSK-CSSLEGLFLN----NNNLSGK-----IPRWLGDLTRLQYIIMPNNH--LEGPI 473 (689)
Q Consensus 406 ~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~----~n~i~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~ 473 (689)
..+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|++|++++|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 34677777777777766555555544 7778888875 5566542 33345667788888886543 44333
Q ss_pred cccc-cCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccC-CcccccCCCCCCEEeCcCCc
Q 040699 474 PVEF-CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 474 ~~~~-~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~ 551 (689)
+..+ ..+++|++|++++|.+++. .++..+.++++|++|++++|.+++. .+.....+++|++|++++|+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDE----------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHH----------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhCccceEeeccCCCCCHH----------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3333 3467888888888776521 2344456778888888888887643 33344567888888888888
Q ss_pred CCCCCchhc-cCCCCCCEEeccCC
Q 040699 552 LNGKIPHQL-VELKTLEVFSVAYN 574 (689)
Q Consensus 552 l~~~~~~~~-~~l~~L~~L~l~~N 574 (689)
++......+ ..++.+....+..+
T Consensus 525 it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCHHHHHHHHHhCCCcEEEEecCc
Confidence 775533333 24566655555443
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-26 Score=235.54 Aligned_cols=225 Identities=20% Similarity=0.293 Sum_probs=149.3
Q ss_pred CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEE
Q 040699 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL 414 (689)
Q Consensus 335 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 414 (689)
.+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. ..+..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 467888888888887 56666777888888888888887 7776554 3778888888888777 345567777778888
Q ss_pred eccCCcccccccccccC---------CCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699 415 QLEGNHFIGEISQSLSK---------CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 485 (689)
Q Consensus 415 ~L~~n~~~~~~~~~~~~---------l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 485 (689)
++++|.+.+..|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 88777766666655443 666666666666665 555556666666666666666663 3445666666666
Q ss_pred EeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCC
Q 040699 486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 565 (689)
Q Consensus 486 L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 565 (689)
|++++|++.+ .+|..+..+++|++|++++|++.+.+|..+.++++|++|++++|++.+.+|..+..+++
T Consensus 234 L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 234 LDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp EECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred EECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 6666655442 45555666666666666666666666666666666666666666666666666666666
Q ss_pred CCEEeccCCcC
Q 040699 566 LEVFSVAYNNL 576 (689)
Q Consensus 566 L~~L~l~~N~l 576 (689)
|+.+++..+.+
T Consensus 303 L~~l~l~~~~~ 313 (328)
T 4fcg_A 303 NCIILVPPHLQ 313 (328)
T ss_dssp TCEEECCGGGS
T ss_pred ceEEeCCHHHH
Confidence 66666665543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.4e-28 Score=245.81 Aligned_cols=260 Identities=19% Similarity=0.222 Sum_probs=197.8
Q ss_pred cCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEc
Q 040699 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL 392 (689)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 392 (689)
++..+++.+.+. ..+...+..+++|+.|++++|.+.+..|..|.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 444566666665 4445555556788888888888887777788888888888888888874433 556888888888
Q ss_pred cCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC
Q 040699 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP 472 (689)
Q Consensus 393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~ 472 (689)
++|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 888877543 347888888888888766544 357789999999988877777888888999999999988877
Q ss_pred Ccccc-cCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699 473 IPVEF-CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 473 ~~~~~-~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 551 (689)
.+..+ ..+++|++|++++|.++. ++. ...+++|++|++++|++++. |..+..+++|++|++++|+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~------------~~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYD------------VKG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCE------------EEC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred cHHHHhhccCcCCEEECCCCcCcc------------ccc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence 66666 468889999999888762 222 23478899999999999855 4448888999999999999
Q ss_pred CCCCCchhccCCCCCCEEeccCCcCc-CCCCCccccccccCcccccCCc
Q 040699 552 LNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWEAQFATFNENSYEGNT 599 (689)
Q Consensus 552 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~~~n~ 599 (689)
++ .+|..+..+++|+.|++++|++. +..|.++..++.++.+.+.+++
T Consensus 226 l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 98 46777888899999999999988 4456666666666666666443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.6e-26 Score=230.16 Aligned_cols=235 Identities=21% Similarity=0.234 Sum_probs=159.5
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699 287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366 (689)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 366 (689)
++++.|+++++.+.. .+..+..+++|++|++++|.++ .+|..+.. +++|+.|++++|.+. .+|..+.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 455555555555552 2333444555555555555554 44443322 445555555555554 3444455555555555
Q ss_pred ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
+++|++.+.+|..+.. .. ....+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~-------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE-------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh-------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 5554444344432211 00 0112345888888888888877 56777888889999999998888
Q ss_pred CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526 (689)
Q Consensus 447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 526 (689)
+ +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-----------TLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-----------BCCTTGGGCTTCCEEECTTC
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-----------hcchhhhcCCCCCEEeCCCC
Confidence 4 56678888899999999988888888888888999999888887653 77888888999999999999
Q ss_pred ccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 527 DLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 527 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
++.+.+|..++++++|+.+++..+.+..
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9888899999999999999988776653
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.2e-27 Score=241.21 Aligned_cols=246 Identities=24% Similarity=0.243 Sum_probs=146.4
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCC-cccccccc-------CCCCCcEEeccCCcccccchhhhh-
Q 040699 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD-GSIPSSFG-------NMNFLRILDLSNNQLTGEIPEHLA- 381 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~- 381 (689)
++|+.+++++|.+ .+|..+... |+.|++++|.+. ...|..+. ++++|++|++++|++++.+|..++
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4555566666665 455544432 556666666553 22333332 456666666666666655555543
Q ss_pred cCCCCCCEEEccCCcCCccCcccccCC-----CCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCc--CChhh-
Q 040699 382 VGCVNLESLVLSNNSLKGHMFSRNFNL-----ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK--IPRWL- 453 (689)
Q Consensus 382 ~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~l- 453 (689)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4466666666666666655 4444444 6666666666666666656666666777777776665533 22222
Q ss_pred -cCCCCCcEEEcCCCcccc---CCcccccCCCCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCccc
Q 040699 454 -GDLTRLQYIIMPNNHLEG---PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDL 528 (689)
Q Consensus 454 -~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 528 (689)
..+++|++|++++|++++ .....+..+++|++|++++|.+++ ..| ..+..+++|++|++++|++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-----------AAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-----------SCCCSCCCCCTTCCEEECTTSCC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-----------ccchhhhhhcCCCCEEECCCCcc
Confidence 566677777777776662 122334456677777777766652 222 3345566777777777777
Q ss_pred ccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699 529 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 529 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 578 (689)
+ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 4455444 6777777777777755 44 6667777777777777664
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=247.51 Aligned_cols=244 Identities=22% Similarity=0.244 Sum_probs=195.2
Q ss_pred CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (689)
++|+.|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+ .++|+.|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 478888888888887777888888888888888888875444 5568888888888888876443 37899999
Q ss_pred ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCccccc-CCCCCcEEeccccccc
Q 040699 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFC-QLDLLQILDISDNNIS 494 (689)
Q Consensus 416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~ 494 (689)
+++|.+.+..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999988776554 457899999999999988888888899999999999999887777776 7899999999999887
Q ss_pred cccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699 495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 574 (689)
Q Consensus 495 ~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 574 (689)
+ +| ....+++|+.|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 183 ~------------~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 183 D------------VK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp E------------EE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred c------------cc-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 3 22 23358899999999999996554 48889999999999999985 6777888899999999999
Q ss_pred cCcC-CCCCccccccccCccccc-------CCcCCCCCC
Q 040699 575 NLSG-EIPEWEAQFATFNENSYE-------GNTFLCGLP 605 (689)
Q Consensus 575 ~l~~-~~~~~~~~~~~~~~~~~~-------~n~~~c~~~ 605 (689)
++.| .+|.++..+..+..+... ++++.|.|+
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 9984 445555556556555554 778888765
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-27 Score=240.36 Aligned_cols=244 Identities=20% Similarity=0.225 Sum_probs=183.7
Q ss_pred CCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCC
Q 040699 309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE 388 (689)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 388 (689)
.+++|++|++++|.++ .++...+..+++|+.|++++|.+.+..+ +..+++|++|++++|+++ .++. .++|+
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccC-----CCCcC
Confidence 3456666666666666 3443334446677777777777664433 777778888888888776 4442 46788
Q ss_pred EEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhh-cCCCCCcEEEcCCC
Q 040699 389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWL-GDLTRLQYIIMPNN 467 (689)
Q Consensus 389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~l~~n 467 (689)
+|++++|.+.+..+. .+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 888888887765544 35778888888888887777788888888888888888887666665 46788999999999
Q ss_pred ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699 468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL 547 (689)
Q Consensus 468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 547 (689)
.+++..+ ...+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~------------~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLA------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCC------------EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred cCccccc--ccccccCCEEECCCCcCC------------cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 8886522 334889999999999887 45566888999999999999998 46777889999999999
Q ss_pred cCCcCC-CCCchhccCCCCCCEEeccCC-cCcCC
Q 040699 548 SNNKLN-GKIPHQLVELKTLEVFSVAYN-NLSGE 579 (689)
Q Consensus 548 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~ 579 (689)
++|++. +..|..+..+++|+.+++.+| .+.+.
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 999998 678888888999999998854 34443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.5e-25 Score=217.89 Aligned_cols=209 Identities=24% Similarity=0.251 Sum_probs=153.4
Q ss_pred CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL 440 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 440 (689)
+|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4566666666655 444444444666666666666666655556666777777777777776666667777777777777
Q ss_pred CCCCCCCcCChhhcCCCCCcEEEcCCCccccC-CcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccc
Q 040699 441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ 519 (689)
Q Consensus 441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~ 519 (689)
++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ ..+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~ 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----------IYCTDLRVLHQMP 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-----------ECGGGGHHHHTCT
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-----------CCHHHhhhhhhcc
Confidence 77777765555677778888888888887753 47778888888888888887763 3445666666666
Q ss_pred ----eEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 520 ----TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 520 ----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
+|++++|.+++..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 8999999998766666554 4899999999999987777788899999999999999998874
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=236.58 Aligned_cols=269 Identities=23% Similarity=0.276 Sum_probs=216.4
Q ss_pred CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341 (689)
Q Consensus 262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 341 (689)
.+++.++++++.+. .+|..+ .++|+.|++++|.++.+.. .+++|++|++++|+++ .+|. .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 35888999998887 667643 2789999999999886443 5689999999999988 6776 46899999
Q ss_pred EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421 (689)
Q Consensus 342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 421 (689)
++++|.+++. |. .+++|+.|++++|+++ .+|.. +++|++|++++|.+.++.. .+++|+.|++++|.+
T Consensus 107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred ECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCC
Confidence 9999998854 43 5688999999999998 67653 5899999999999887543 367899999999998
Q ss_pred cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCC
Q 040699 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSC 501 (689)
Q Consensus 422 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~ 501 (689)
+.. | ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++. +|. .+++|++|++++|.++
T Consensus 174 ~~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~------- 234 (622)
T 3g06_A 174 TSL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLT------- 234 (622)
T ss_dssp SCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-------
T ss_pred CCC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccC-------
Confidence 764 4 457899999999999984 443 24789999999999984 343 2478999999999887
Q ss_pred CcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
.+| ..+++|+.|++++|+++. +|. .+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus 235 -----~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 235 -----SLP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred -----cCC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 345 456889999999999985 444 6789999999999999 668889999999999999999998877
Q ss_pred Ccccccc
Q 040699 582 EWEAQFA 588 (689)
Q Consensus 582 ~~~~~~~ 588 (689)
..+..+.
T Consensus 302 ~~l~~L~ 308 (622)
T 3g06_A 302 QALREIT 308 (622)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 6554443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.1e-28 Score=273.37 Aligned_cols=430 Identities=14% Similarity=0.073 Sum_probs=228.6
Q ss_pred hhhcCCCCCCEEECCCCCCCC-c-------------chhHHhhcCCCCcEEECCCCcCCcccCCCCCC-CCCCCCeeeCC
Q 040699 25 QELHSFTNLEYLSLDFSSLHI-S-------------LLQSIASIFPSLKNLSMSGCEVNGLVRGQGFP-HFKSLEHLDMS 89 (689)
Q Consensus 25 ~~~~~~~~L~~L~L~~~~i~~-~-------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~ 89 (689)
..+..+++|++|+++++.... . .+..+...+++|++|++++|.+++.... .+. .+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCC
Confidence 456677788888887764211 0 0233444478888888888877644332 232 57788888888
Q ss_pred CC-ccccCCccchhhhhcCCCccEEECCCCC-CCCCCCccCccccCCCCCCCEEeCCCCc--Ccc-CCCccccCCCCCcE
Q 040699 90 ST-RIALNTSFLQIIGESMPSLKYLSLSNST-RGTNSSRILDQGLCSLMHLQELYMADND--LRG-SLPWCLANMTSLRI 164 (689)
Q Consensus 90 ~~-~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~ 164 (689)
+| .+ .......+..++++|++|++++|. .+.....++. ....+++|++|++++|. ++. .++..+..+++|++
T Consensus 139 ~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 139 SCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH-FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp SCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred CcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence 87 44 222233344348888888888873 2221112221 34477888888888886 221 11122345688888
Q ss_pred EEccce-eeeeecCcccccCCCCCCEEeccCCcc-------eeecCcccccCCCCcceee-ccCCcccccccccccCccC
Q 040699 165 LYVSYN-QLTGSISSSPLVHLTSIEKLYLSNNHF-------RIPISLEPLFNHSRLKIFY-ADNNELNAEITQSHSLTAP 235 (689)
Q Consensus 165 L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~ 235 (689)
|++++| .+. .++. .+..+++|++|+++.+.. .+ .. ..+.++++|+.+. +....
T Consensus 216 L~L~~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~-~~l~~~~~L~~Ls~~~~~~-------------- 277 (594)
T 2p1m_B 216 LKLNRAVPLE-KLAT-LLQRAPQLEELGTGGYTAEVRPDVYSG-LS-VALSGCKELRCLSGFWDAV-------------- 277 (594)
T ss_dssp EECCTTSCHH-HHHH-HHHHCTTCSEEECSBCCCCCCHHHHHH-HH-HHHHTCTTCCEEECCBTCC--------------
T ss_pred EecCCCCcHH-HHHH-HHhcCCcceEcccccccCccchhhHHH-HH-HHHhcCCCcccccCCcccc--------------
Confidence 888887 343 3444 567788888888765531 10 00 1234444444441 11100
Q ss_pred ccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCE
Q 040699 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM 315 (689)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 315 (689)
...++..+..+++|+.|++++|.+.+.....+...+ ++|++
T Consensus 278 ---------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~------------------------~~L~~ 318 (594)
T 2p1m_B 278 ---------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC------------------------PKLQR 318 (594)
T ss_dssp ---------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC------------------------TTCCE
T ss_pred ---------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC------------------------CCcCE
Confidence 011122222344555555555544322222222334 44444
Q ss_pred EEccCCcCcccCChhhhhcCCCceEEEccC---------CcCCccccccc-cCCCCCcEEeccCCcccccchhhhhcCCC
Q 040699 316 LDISNNNFRGHIPLEIGDILPSLHVFNISM---------NALDGSIPSSF-GNMNFLRILDLSNNQLTGEIPEHLAVGCV 385 (689)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 385 (689)
|++++| +.+.....+...+++|+.|++.+ +.+++.....+ .++++|+.|++..+.+++.....+...++
T Consensus 319 L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~ 397 (594)
T 2p1m_B 319 LWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397 (594)
T ss_dssp EEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred EeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence 444444 22111122223345555555522 23332222222 23566666666666666544444444466
Q ss_pred CCCEEEcc--C----CcCCccCc-----ccccCCCCccEEeccCCcccccccccccC-CCCCCEEECCCCCCCCcCChhh
Q 040699 386 NLESLVLS--N----NSLKGHMF-----SRNFNLANLMSLQLEGNHFIGEISQSLSK-CSSLEGLFLNNNNLSGKIPRWL 453 (689)
Q Consensus 386 ~L~~L~l~--~----n~l~~~~~-----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~l 453 (689)
+|+.|+++ + +.+++... ..+..+++|+.|++++ .++......+.. +++|++|++++|.+++..+..+
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 77777776 2 33432211 1134567777777766 444443344443 7778888888777764444443
Q ss_pred -cCCCCCcEEEcCCCccccCCcc-cccCCCCCcEEeccccccccccccCCCcccCCCchhh-ccccccceEeccCccc
Q 040699 454 -GDLTRLQYIIMPNNHLEGPIPV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDL 528 (689)
Q Consensus 454 -~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l 528 (689)
.++++|++|++++|.+++.... ....+++|++|++++|+++. .....+ ..+++|+...+..+.-
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF-----------GACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH-----------HHHHHHHHHCTTEEEEEECSSSC
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH-----------HHHHHHHHhCCCCEEEEecCCCc
Confidence 5577788888888877543322 23456788888888887642 111122 4456666666665543
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.2e-25 Score=218.75 Aligned_cols=228 Identities=21% Similarity=0.239 Sum_probs=199.4
Q ss_pred EEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC
Q 040699 364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN 443 (689)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 443 (689)
.++..+..+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4555566665 6776543 57999999999999988889999999999999999999888889999999999999999
Q ss_pred CCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEec
Q 040699 444 NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL 523 (689)
Q Consensus 444 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L 523 (689)
.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+|..+..+++|++|++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEEC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----------ecCchhhccCCCCCEEEC
Confidence 9998888899999999999999999998888789999999999999998862 135889999999999999
Q ss_pred cCcccccCCcccccCCCCCC----EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCc
Q 040699 524 SHNDLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNT 599 (689)
Q Consensus 524 ~~n~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~ 599 (689)
++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|.+++..+..+..+..++.+++.+||
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 99999988888887777777 999999999976665554 4589999999999997777777788999999999999
Q ss_pred CCCCCCC
Q 040699 600 FLCGLPL 606 (689)
Q Consensus 600 ~~c~~~~ 606 (689)
+.|+|+.
T Consensus 236 ~~c~c~~ 242 (276)
T 2z62_A 236 WDCSCPR 242 (276)
T ss_dssp BCCCTTT
T ss_pred ccccCCc
Confidence 9999874
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.3e-26 Score=233.69 Aligned_cols=249 Identities=21% Similarity=0.217 Sum_probs=199.4
Q ss_pred hcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCc-ccCChhhh------hcCCCceEEEccCCcCCccccccc
Q 040699 284 ENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFR-GHIPLEIG------DILPSLHVFNISMNALDGSIPSSF 356 (689)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~~ 356 (689)
...++|+++++++|.+ ..|..+.. .|+.|++++|.+. ..+|.... ..+++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456777777888777 33433332 2788888888884 34555443 137899999999999998888876
Q ss_pred --cCCCCCcEEeccCCcccccchhhhhcCC-----CCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc--ccc
Q 040699 357 --GNMNFLRILDLSNNQLTGEIPEHLAVGC-----VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--ISQ 427 (689)
Q Consensus 357 --~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~ 427 (689)
..+++|++|++++|++++. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 8999999999999999844 54333 34 8999999999999999889999999999999999997654 233
Q ss_pred cc--cCCCCCCEEECCCCCCCCc---CChhhcCCCCCcEEEcCCCccccCCc-ccccCCCCCcEEeccccccccccccCC
Q 040699 428 SL--SKCSSLEGLFLNNNNLSGK---IPRWLGDLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLDLSC 501 (689)
Q Consensus 428 ~~--~~l~~L~~L~L~~n~i~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~l~ls~ 501 (689)
.+ ..+++|++|++++|.+.+. ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~------- 266 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------- 266 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-------
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-------
Confidence 33 8899999999999999832 22445678999999999999998765 45677899999999999987
Q ss_pred CcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
.+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 267 -----~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 -----QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -----hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5676665 8999999999999976 55 8999999999999999985
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.7e-24 Score=211.93 Aligned_cols=207 Identities=22% Similarity=0.265 Sum_probs=176.7
Q ss_pred CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL 440 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 440 (689)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4667788887777 6665543 47888888888888877778888888999999888888777777888999999999
Q ss_pred CCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccce
Q 040699 441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT 520 (689)
Q Consensus 441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~ 520 (689)
++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++. ..+..+..+++|++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-----------LPKGVFDKLTSLKE 161 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCE
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-----------cCHhHccCCcccce
Confidence 9999987777788889999999999999998888888999999999999998762 34455888999999
Q ss_pred EeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 521 LNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 521 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99999999988888899999999999999999988777888999999999999999998864
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.7e-24 Score=211.81 Aligned_cols=207 Identities=20% Similarity=0.203 Sum_probs=174.8
Q ss_pred ccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCC
Q 040699 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL 435 (689)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 435 (689)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 566777888888888887 7776553 5788888888888887777888888888888888888765433 678899
Q ss_pred CEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccc
Q 040699 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL 515 (689)
Q Consensus 436 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l 515 (689)
++|++++|.+. .+|..+.++++|++|++++|++++..+..|..+++|++|++++|.++. ..+..|..+
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l 147 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----------LPPGLLTPT 147 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----------CCTTTTTTC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----------cChhhcccc
Confidence 99999999988 677788889999999999999998888889999999999999998763 455668889
Q ss_pred cccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 516 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+....+|+.+++++|++.|.+.
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 99999999999999877778899999999999999999 667777888899999999999998764
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-25 Score=240.33 Aligned_cols=246 Identities=20% Similarity=0.212 Sum_probs=189.8
Q ss_pred CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699 310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389 (689)
Q Consensus 310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 389 (689)
+++|++|++++|.+++ +++..+..+++|+.|++++|.+++..| |..+++|++|++++|.++ .++. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence 3466667777776663 333334446677777777777765444 777788888888888776 4442 368888
Q ss_pred EEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhc-CCCCCcEEEcCCCc
Q 040699 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG-DLTRLQYIIMPNNH 468 (689)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n~ 468 (689)
|++++|.+.+..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 88888888776554 357888889998888888788888889999999999998877777775 68899999999999
Q ss_pred cccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699 469 LEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548 (689)
Q Consensus 469 l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 548 (689)
+++..+ ...+++|++|++++|.++ .+|+.+..+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~------------~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLA------------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCC------------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred cccccc--cccCCCCCEEECCCCCCC------------CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 886633 335889999999999887 355568889999999999999995 67778899999999999
Q ss_pred CCcCC-CCCchhccCCCCCCEEecc-------CCcCcCCCCC
Q 040699 549 NNKLN-GKIPHQLVELKTLEVFSVA-------YNNLSGEIPE 582 (689)
Q Consensus 549 ~N~l~-~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~ 582 (689)
+|++. +.+|..+..++.|+.+++. .++..|.++.
T Consensus 246 ~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 99998 6677888888888888886 6777666654
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.6e-27 Score=264.08 Aligned_cols=431 Identities=16% Similarity=0.120 Sum_probs=290.3
Q ss_pred CCCCCCCEEeCCCCCC-CCccc------------cchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCC-c
Q 040699 2 GSFPSLNTLYLLFNNF-TDIAT------------TAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC-E 67 (689)
Q Consensus 2 ~~l~~L~~L~Ls~n~i-~~~~~------------~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n-~ 67 (689)
.++++|++|+++++.. .++.. +......+++|++|+|++|.+++.....+...+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 3589999999999863 22111 12234578999999999999888766677645999999999999 4
Q ss_pred CCcccCCCCCCCCCCCCeeeCCCCccccCCccch---hhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCC
Q 040699 68 VNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQ---IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMA 144 (689)
Q Consensus 68 l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 144 (689)
+++........++++|++|++++|.++ +.... .+...+++|+.|++++|........+. ..+.++++|++|+++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVD--DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE-RLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEE--CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH-HHHHHCTTCCEEECC
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccC--CcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH-HHHHhCCCCcEEecC
Confidence 443211113347899999999999873 33322 233347899999999875111001111 123567999999999
Q ss_pred CC-cCccCCCccccCCCCCcEEEccce-------eeeeecCcccccCCCCCCEE-eccCCcceeecCcccccCCCCccee
Q 040699 145 DN-DLRGSLPWCLANMTSLRILYVSYN-------QLTGSISSSPLVHLTSIEKL-YLSNNHFRIPISLEPLFNHSRLKIF 215 (689)
Q Consensus 145 ~n-~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L 215 (689)
+| .+. .++..+..+++|++|+++.+ .+. .++. .+.++++|+.+ .+.+.... .. ......+++|+.|
T Consensus 220 ~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~~-~l-~~~~~~~~~L~~L 294 (594)
T 2p1m_B 220 RAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVPA-YL-PAVYSVCSRLTTL 294 (594)
T ss_dssp TTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCGG-GG-GGGHHHHTTCCEE
T ss_pred CCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccchh-hH-HHHHHhhCCCCEE
Confidence 98 344 36777889999999996544 343 3343 57889999998 44432211 11 1122357899999
Q ss_pred eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEee
Q 040699 216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295 (689)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 295 (689)
++++|.+.+.. +...+..+++|+.|++++| +.+.....+...+++|++|++.
T Consensus 295 ~L~~~~l~~~~---------------------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 295 NLSYATVQSYD---------------------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp ECTTCCCCHHH---------------------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred EccCCCCCHHH---------------------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 99988754321 1122446678888888877 4433333444568899999885
Q ss_pred CC---------CCCCCCCCCC-CCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEcc--C----CcCCcc-----ccc
Q 040699 296 ND---------SLAGPFRLPI-HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNIS--M----NALDGS-----IPS 354 (689)
Q Consensus 296 ~~---------~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~~-----~~~ 354 (689)
++ .+++.....+ .++++|++|.+..+.+++.....+...+++|+.|+++ + +.+++. ++.
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 42 2322111111 2478899998888888765555555568899999998 3 445421 222
Q ss_pred cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccc-cCCCCccEEeccCCcccccccc-cccCC
Q 040699 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN-FNLANLMSLQLEGNHFIGEISQ-SLSKC 432 (689)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~-~~~~l 432 (689)
.+..+++|+.|++++ .+++.....+...+++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 367789999999987 67656666666568899999999999876555554 5689999999999998554333 44568
Q ss_pred CCCCEEECCCCCCCCcCChhh-cCCCCCcEEEcCCCcc
Q 040699 433 SSLEGLFLNNNNLSGKIPRWL-GDLTRLQYIIMPNNHL 469 (689)
Q Consensus 433 ~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~l~~n~l 469 (689)
++|++|++++|+++......+ ..+++|+...+..+.-
T Consensus 506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 999999999998864333344 4577887777766543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.1e-24 Score=208.90 Aligned_cols=207 Identities=22% Similarity=0.235 Sum_probs=186.0
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699 385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM 464 (689)
Q Consensus 385 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 464 (689)
.+.+.++++++.++.++.. + .++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3678999999999875432 2 368999999999999888889999999999999999999777777899999999999
Q ss_pred CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699 465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES 544 (689)
Q Consensus 465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 544 (689)
++|++++..+..|..+++|++|++++|.++. ..+..|..+++|++|++++|.+++..+..|..+++|++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS-----------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCe-----------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 9999998888889999999999999998873 55667899999999999999999888788999999999
Q ss_pred EeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699 545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
|++++|++++..+..|..+++|+.|++++|+++...+..+..+..++.+++.+||+.|+|+
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999998888889999999999999999997777777788899999999999999986
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=7.2e-24 Score=210.46 Aligned_cols=208 Identities=22% Similarity=0.220 Sum_probs=183.4
Q ss_pred hcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCc
Q 040699 381 AVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQ 460 (689)
Q Consensus 381 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 460 (689)
+..++++++++++++.++.+.... .++++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 445889999999999998765433 37899999999999988889999999999999999999854332 7899999
Q ss_pred EEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC
Q 040699 461 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK 540 (689)
Q Consensus 461 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 540 (689)
+|++++|+++ .+|..+..+++|++|++++|+++. ..+..|.++++|++|++++|++++..+..|..++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-----------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-----------CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-----------cCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 9999999998 667788999999999999998873 4557799999999999999999988888899999
Q ss_pred CCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCC
Q 040699 541 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL 606 (689)
Q Consensus 541 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 606 (689)
+|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+.....++.+++.+|||.|+|..
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 9999999999999877778888999999999999998 6676666777899999999999999853
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.4e-22 Score=220.66 Aligned_cols=259 Identities=24% Similarity=0.267 Sum_probs=215.7
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699 287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366 (689)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 366 (689)
.+++.|+++++.++.+ |..+. ++|++|++++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 4699999999999854 43333 79999999999998 6776 36899999999999985 454 679999999
Q ss_pred ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
+++|.++ .+|. .+++|+.|++++|.++.+.. .+++|++|++++|.+.+. |. .+++|+.|++++|.++
T Consensus 108 Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 108 IFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ECSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred CcCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence 9999998 6766 37899999999999987554 358999999999998754 33 4578999999999998
Q ss_pred CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526 (689)
Q Consensus 447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 526 (689)
+ +| ..+++|+.|++++|.+++. |. .+++|+.|++++|.++ .+|. .+++|+.|++++|
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~------------~l~~---~~~~L~~L~Ls~N 231 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT------------SLPA---LPSGLKELIVSGN 231 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS------------SCCC---CCTTCCEEECCSS
T ss_pred C-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc------------ccCC---CCCCCCEEEccCC
Confidence 5 55 4578999999999999853 33 3578999999999887 3443 2478999999999
Q ss_pred ccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCC
Q 040699 527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLC 602 (689)
Q Consensus 527 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c 602 (689)
++++ +| ..+++|++|++++|+++. +|. .+++|+.|++++|.++ .+|..+..++.+..+++.+|++..
T Consensus 232 ~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 232 RLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred ccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 9996 44 466899999999999995 554 5689999999999999 778888889999999999999764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.2e-23 Score=205.58 Aligned_cols=226 Identities=22% Similarity=0.236 Sum_probs=164.2
Q ss_pred CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (689)
++..+++..+.+.+. .....+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 344555555555433 23455667777777777765 4443 23377777777777777653 35667778888888
Q ss_pred cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496 (689)
Q Consensus 417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 496 (689)
++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 171 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS- 171 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-
Confidence 8888777766777788888888888888886666777788888888888888887777777788888888888887662
Q ss_pred cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcC
Q 040699 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 576 (689)
Q Consensus 497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 576 (689)
..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+. +++|+.++++.|.+
T Consensus 172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 172 ----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 234 (272)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred ----------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence 4455577788888888888888877777788888888888888887643 45677788888888
Q ss_pred cCCCCCccccc
Q 040699 577 SGEIPEWEAQF 587 (689)
Q Consensus 577 ~~~~~~~~~~~ 587 (689)
+|.+|.+++.+
T Consensus 235 ~g~ip~~~~~~ 245 (272)
T 3rfs_A 235 SGVVRNSAGSV 245 (272)
T ss_dssp GGGBBCTTSCB
T ss_pred CCcccCccccc
Confidence 88888765443
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.9e-22 Score=196.34 Aligned_cols=182 Identities=21% Similarity=0.203 Sum_probs=143.3
Q ss_pred CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699 386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465 (689)
Q Consensus 386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 465 (689)
+.++++++++.+..++.. + .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 455666666666554332 2 2467777777777777767777778888888888888877777777888888888888
Q ss_pred CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEE
Q 040699 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545 (689)
Q Consensus 466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 545 (689)
+|++++..+..|..+++|++|++++|.+++ ..+..|..+++|++|++++|++++..+..|+.+++|++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCC-----------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 888887777778888888888888887762 444557888899999999999987777788999999999
Q ss_pred eCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 546 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
+|++|++++..+..+..+++|+.|++++|++.|...
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 999999998888888889999999999999998744
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.3e-22 Score=198.22 Aligned_cols=205 Identities=21% Similarity=0.182 Sum_probs=110.6
Q ss_pred CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (689)
++|+.|++++|.+... ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3444444444444321 12444555555555555544 222 222355555555555555555444455555555555
Q ss_pred ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495 (689)
Q Consensus 416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 495 (689)
+++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555555555555555666666666666555444555556666666666666665555555566666666666655542
Q ss_pred ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563 (689)
Q Consensus 496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 563 (689)
..+..+..+++|+.|++++|.+.+ .++.|+.|+++.|.+++.+|..++.+
T Consensus 196 -----------~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 196 -----------VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred -----------cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 334445566666666666665542 23456666666666666666655543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3e-22 Score=193.48 Aligned_cols=195 Identities=17% Similarity=0.203 Sum_probs=107.1
Q ss_pred CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCc-CCccCcccccCCCCccEEeccC-CcccccccccccCCCCCCEE
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS-LKGHMFSRNFNLANLMSLQLEG-NHFIGEISQSLSKCSSLEGL 438 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L 438 (689)
++++|++++|+++ .++...+.++++|++|++++|. ++.+.+..|.++++|++|++++ |.+.+..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3444444444443 3333333334444444444443 4444444444455555555554 45544444455555555555
Q ss_pred ECCCCCCCCcCChhhcCCCCCc---EEEcCCC-ccccCCcccccCCCCCc-EEeccccccccccccCCCcccCCCch-hh
Q 040699 439 FLNNNNLSGKIPRWLGDLTRLQ---YIIMPNN-HLEGPIPVEFCQLDLLQ-ILDISDNNISGRLDLSCNKLIGPIPP-KI 512 (689)
Q Consensus 439 ~L~~n~i~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~l~ls~n~l~~~~~~-~~ 512 (689)
++++|.+.+ +|. |..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|. .+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~------------~i~~~~~ 176 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT------------SVQGYAF 176 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC------------EECTTTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc------------ccCHhhc
Confidence 555555553 333 55555555 6666666 66655555566666666 6666666654 2232 23
Q ss_pred ccccccceEeccCcc-cccCCcccccCC-CCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699 513 GNLTRIQTLNLSHND-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 574 (689)
Q Consensus 513 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 574 (689)
.. ++|++|++++|+ +++..+..|.++ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 33 567777777773 665556667777 7777777777777644333 4566677776665
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.7e-23 Score=214.06 Aligned_cols=235 Identities=20% Similarity=0.218 Sum_probs=106.3
Q ss_pred ceEEEccCCcCCcccc----ccccCCC-CCcEEeccCCcccccchhhhhcC----CCCCCEEEccCCcCCccCcccc---
Q 040699 338 LHVFNISMNALDGSIP----SSFGNMN-FLRILDLSNNQLTGEIPEHLAVG----CVNLESLVLSNNSLKGHMFSRN--- 405 (689)
Q Consensus 338 L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~--- 405 (689)
|+.|++++|.+++..+ ..|..++ +|++|++++|.+.+..+..+... .++|++|++++|.+.+..+..+
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4444444444443333 3444444 45555555555443222222210 1445555555555444333322
Q ss_pred -cCC-CCccEEeccCCcccccccccc----cC-CCCCCEEECCCCCCCCcCC----hhhcCCC-CCcEEEcCCCccccCC
Q 040699 406 -FNL-ANLMSLQLEGNHFIGEISQSL----SK-CSSLEGLFLNNNNLSGKIP----RWLGDLT-RLQYIIMPNNHLEGPI 473 (689)
Q Consensus 406 -~~l-~~L~~L~L~~n~~~~~~~~~~----~~-l~~L~~L~L~~n~i~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~ 473 (689)
..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+++..+ ..+..++ +|++|++++|++++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 122 455555555555544333222 22 2355555555555553222 2233333 5555555555555444
Q ss_pred cccc----cCC-CCCcEEeccccccccccccCCCcccCCCchhhcc-ccccceEeccCcccccCCc----ccccCCCCCC
Q 040699 474 PVEF----CQL-DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN-LTRIQTLNLSHNDLTGSIP----STFSNLKHVE 543 (689)
Q Consensus 474 ~~~~----~~l-~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~ 543 (689)
+..+ ..+ ++|++|++++|.++.. -...++..+.. .++|++|+|++|.+++..+ ..+..+++|+
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChh-------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence 4322 223 3556666555555410 00012333333 2356666666666554333 2234455666
Q ss_pred EEeCcCCcCCCCCc-------hhccCCCCCCEEeccCCcCcCC
Q 040699 544 SLDLSNNKLNGKIP-------HQLVELKTLEVFSVAYNNLSGE 579 (689)
Q Consensus 544 ~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~ 579 (689)
+|++++|.+....+ ..+..+++|+.||+++|++...
T Consensus 257 ~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 66666665443322 2344455566666666665543
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.3e-21 Score=190.41 Aligned_cols=180 Identities=23% Similarity=0.256 Sum_probs=153.3
Q ss_pred CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL 440 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 440 (689)
..+.++++++.++ .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567777777776 6776543 47888888888888887778888888999999998888888888888999999999
Q ss_pred CCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccce
Q 040699 441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT 520 (689)
Q Consensus 441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~ 520 (689)
++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++ ..+..+..+++|++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-----------IPAGAFDKLTNLQT 159 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-----------cCHHHcCcCcCCCE
Confidence 9999987777888899999999999999998777788899999999999998762 44557889999999
Q ss_pred EeccCcccccCCcccccCCCCCCEEeCcCCcCCCC
Q 040699 521 LNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555 (689)
Q Consensus 521 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 555 (689)
|++++|++++..+..|..+++|++|++++|++...
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999988888899999999999999999865
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.7e-22 Score=192.82 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=149.1
Q ss_pred CCceEEEccCCcCCccccccccCCCCCcEEeccCCc-ccccchhhhhcCCCCCCEEEccC-CcCCccCcccccCCCCccE
Q 040699 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ-LTGEIPEHLAVGCVNLESLVLSN-NSLKGHMFSRNFNLANLMS 413 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 413 (689)
++++.|++++|.+++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |.+.++.+..|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467777777777776666677777888888888876 65 67766667778888888887 7777777777777888888
Q ss_pred EeccCCcccccccccccCCCCCC---EEECCCC-CCCCcCChhhcCCCCCc-EEEcCCCccccCCcccccCCCCCcEEec
Q 040699 414 LQLEGNHFIGEISQSLSKCSSLE---GLFLNNN-NLSGKIPRWLGDLTRLQ-YIIMPNNHLEGPIPVEFCQLDLLQILDI 488 (689)
Q Consensus 414 L~L~~n~~~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l 488 (689)
|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+.+|.++++|+ +|++++|+++...+..|.. ++|++|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 8888887765 444 77777777 8888888 78766666788888888 8888888888555555655 78888888
Q ss_pred cccc-cccccccCCCcccCCCchhhccc-cccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699 489 SDNN-ISGRLDLSCNKLIGPIPPKIGNL-TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 489 ~~n~-~~~~l~ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 551 (689)
++|+ ++. ..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~-----------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTV-----------IDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCE-----------ECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCccc-----------CCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 8884 652 445667888 8899999999888854443 56788888888763
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.2e-23 Score=217.08 Aligned_cols=240 Identities=19% Similarity=0.245 Sum_probs=169.1
Q ss_pred CCCceEEEccCCcCCcccc----ccccCCCCCcEEeccCC---cccccchhhh------hcCCCCCCEEEccCCcCCcc-
Q 040699 335 LPSLHVFNISMNALDGSIP----SSFGNMNFLRILDLSNN---QLTGEIPEHL------AVGCVNLESLVLSNNSLKGH- 400 (689)
Q Consensus 335 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n---~l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~- 400 (689)
+++|+.|++++|.+....+ ..+..+++|++|++++| ++.+.+|..+ +..+++|++|++++|.+.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5667777777777665433 33567777777777775 3334445444 24577888888888887763
Q ss_pred ---CcccccCCCCccEEeccCCccccccccc----ccCC---------CCCCEEECCCCCCC-CcCC---hhhcCCCCCc
Q 040699 401 ---MFSRNFNLANLMSLQLEGNHFIGEISQS----LSKC---------SSLEGLFLNNNNLS-GKIP---RWLGDLTRLQ 460 (689)
Q Consensus 401 ---~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~l---------~~L~~L~L~~n~i~-~~~~---~~l~~l~~L~ 460 (689)
.+..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+. +..+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 3445567788888888888875443333 3333 78888888888887 3344 4566788888
Q ss_pred EEEcCCCcccc-----CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccC----
Q 040699 461 YIIMPNNHLEG-----PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS---- 531 (689)
Q Consensus 461 ~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 531 (689)
+|++++|+++. ..+..+..+++|++|++++|.++.. -.+.+|..+..+++|++|+|++|.+++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 89998888862 2344677888899999888887410 0014567788888999999999988765
Q ss_pred Cccccc--CCCCCCEEeCcCCcCCC----CCchhc-cCCCCCCEEeccCCcCcCCCC
Q 040699 532 IPSTFS--NLKHVESLDLSNNKLNG----KIPHQL-VELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 532 ~~~~~~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~~ 581 (689)
++..+. .+++|++|+|++|.++. .+|..+ ..+++|+.|++++|++++..+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 455663 38899999999999987 367766 557899999999999987664
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=195.88 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCcCEEEccCCcCcccCChhh--hhcCCCceEEEccCCcCCccccccc--cCCCCCcEEeccCCcccccch---hhhhcC
Q 040699 311 KRLGMLDISNNNFRGHIPLEI--GDILPSLHVFNISMNALDGSIPSSF--GNMNFLRILDLSNNQLTGEIP---EHLAVG 383 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 383 (689)
..++.+.+.++.+.+..-..+ ...+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346777777776642111111 1123568888888888877777776 778888888888888775333 122224
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc--c--cccccCCCCCCEEECCCCCCCCcCCh----hhcC
Q 040699 384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--I--SQSLSKCSSLEGLFLNNNNLSGKIPR----WLGD 455 (689)
Q Consensus 384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~L~~n~i~~~~~~----~l~~ 455 (689)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 66777777777777666666666666666666666665431 1 1223455566666666665541 121 2344
Q ss_pred CCCCcEEEcCCCccccCCcccccCC---CCCcEEeccccccc
Q 040699 456 LTRLQYIIMPNNHLEGPIPVEFCQL---DLLQILDISDNNIS 494 (689)
Q Consensus 456 l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~~ 494 (689)
+++|++|++++|++++..|..+..+ ++|++|++++|.++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 5555555555555554444444333 34444444444443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.6e-21 Score=194.12 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=99.5
Q ss_pred CCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCE
Q 040699 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG 437 (689)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 437 (689)
.+++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3444444444444444 3331 2224445555555554444333 44455555555555554432 23455555555
Q ss_pred EECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccc
Q 040699 438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR 517 (689)
Q Consensus 438 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~ 517 (689)
|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~------------~~~~-l~~l~~ 174 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS------------DLTP-LANLSK 174 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------CCGG-GTTCTT
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC------------CChh-hcCCCC
Confidence 55555555532 2 25555555566665555554322 555566666666655554 2222 555566
Q ss_pred cceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 518 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 578 (689)
|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6666666666654332 5556666666666666654432 5556666666666666653
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.8e-22 Score=207.91 Aligned_cols=240 Identities=21% Similarity=0.226 Sum_probs=130.9
Q ss_pred CCcCEEEccCCcCcccCCh----hhhhcCC-CceEEEccCCcCCccccccccCC-----CCCcEEeccCCcccccchhhh
Q 040699 311 KRLGMLDISNNNFRGHIPL----EIGDILP-SLHVFNISMNALDGSIPSSFGNM-----NFLRILDLSNNQLTGEIPEHL 380 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~ 380 (689)
++|++|++++|.++ ..+. ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 33555555555554 2222 2222344 55555555555554444444432 556666666666553333322
Q ss_pred hc---CC-CCCCEEEccCCcCCccCccccc----C-CCCccEEeccCCcccccc----cccccCCC-CCCEEECCCCCCC
Q 040699 381 AV---GC-VNLESLVLSNNSLKGHMFSRNF----N-LANLMSLQLEGNHFIGEI----SQSLSKCS-SLEGLFLNNNNLS 446 (689)
Q Consensus 381 ~~---~l-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~~~~~~----~~~~~~l~-~L~~L~L~~n~i~ 446 (689)
.. .+ ++|++|++++|.+.+.....+. . .++|++|++++|.+.... +..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 21 12 5666666666666554443322 2 246666666666665322 23334444 7777777777776
Q ss_pred CcCCh----hhcCC-CCCcEEEcCCCccccC----CcccccC-CCCCcEEeccccccccccccCCCcccCCCchhhcccc
Q 040699 447 GKIPR----WLGDL-TRLQYIIMPNNHLEGP----IPVEFCQ-LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLT 516 (689)
Q Consensus 447 ~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~ 516 (689)
+..+. .+..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++. . ...+...+..++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~-~~~l~~~~~~l~ 253 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP------S-LENLKLLKDSLK 253 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC------C-HHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH------H-HHHHHHHHhcCC
Confidence 54443 23334 4777777777777653 2334444 34777777777776520 0 001113345667
Q ss_pred ccceEeccCcccccCC-------cccccCCCCCCEEeCcCCcCCCCCch
Q 040699 517 RIQTLNLSHNDLTGSI-------PSTFSNLKHVESLDLSNNKLNGKIPH 558 (689)
Q Consensus 517 ~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~ 558 (689)
+|++|++++|.+.+.. +..+..+++|+.|++++|++....+.
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 7888888888754332 23566778888888888888755433
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.9e-22 Score=204.67 Aligned_cols=253 Identities=17% Similarity=0.218 Sum_probs=187.1
Q ss_pred CcCEEEccCCcCcccCChhhhhcC--CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDIL--PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 389 (689)
.++.++++++.+.+ .....+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 36778888877652 222223 6889999999988876655 5578999999999998875423344556899999
Q ss_pred EEccCCcCCccCcccccCCCCccEEeccCC-cccc-cccccccCCCCCCEEECCCC-CCCCc-CChhhcCCC-CCcEEEc
Q 040699 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGN-HFIG-EISQSLSKCSSLEGLFLNNN-NLSGK-IPRWLGDLT-RLQYIIM 464 (689)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~-~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~l~~l~-~L~~L~l 464 (689)
|++++|.+.+..+..+..+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999888777777888999999999998 5654 25666788999999999999 88753 566778888 9999999
Q ss_pred CCCc--cc-cCCcccccCCCCCcEEeccccc-cccccccCCCcccCCCchhhccccccceEeccCcc-cccCCcccccCC
Q 040699 465 PNNH--LE-GPIPVEFCQLDLLQILDISDNN-ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND-LTGSIPSTFSNL 539 (689)
Q Consensus 465 ~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 539 (689)
++|. ++ +..+..+..+++|++|++++|. +++ ..+..+..+++|++|++++|. +.......++.+
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-----------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 9984 44 3456667788999999999887 442 455677888999999999985 322222257788
Q ss_pred CCCCEEeCcCCcCCCCCchhccCC-CCCCEEeccCCcCcCCCCCcc
Q 040699 540 KHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPEWE 584 (689)
Q Consensus 540 ~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~ 584 (689)
++|++|++++| +... .+..+ ..+..|++++|.+++..|.+.
T Consensus 272 ~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 272 PTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence 99999999988 4432 23322 336666789999988877654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9.4e-22 Score=200.88 Aligned_cols=223 Identities=17% Similarity=0.171 Sum_probs=133.8
Q ss_pred CCCEEEccCCcCcCCCChHHHhcC--CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCccc-CChhhhhcCCCce
Q 040699 263 DLEYADLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGH-IPLEIGDILPSLH 339 (689)
Q Consensus 263 ~L~~L~l~~~~l~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~ 339 (689)
.++.++++++.+. + ..+..+ ++++.+++.++.+.+..+. +..+++|++|++++|.+++. ++. .+..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCS
T ss_pred hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCC
Confidence 4677888877665 2 223455 7888888888887776554 44677888888888877643 333 334467788
Q ss_pred EEEccCCcCCccccccccCCCCCcEEeccCC-cccccchhhhhcCCCCCCEEEccCC-cCCcc-CcccccCCC-CccEEe
Q 040699 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNN-QLTGEIPEHLAVGCVNLESLVLSNN-SLKGH-MFSRNFNLA-NLMSLQ 415 (689)
Q Consensus 340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ 415 (689)
.|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888877777666677777777777777777 5654322333444777777777777 66543 233344566 666666
Q ss_pred ccCCc--cc-ccccccccCCCCCCEEECCCCC-CCCcCChhhcCCCCCcEEEcCCCc-cccCCcccccCCCCCcEEeccc
Q 040699 416 LEGNH--FI-GEISQSLSKCSSLEGLFLNNNN-LSGKIPRWLGDLTRLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISD 490 (689)
Q Consensus 416 L~~n~--~~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 490 (689)
+++|. ++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 66662 32 2334445556666666666665 444444455555666666665553 1111111344455555555555
Q ss_pred c
Q 040699 491 N 491 (689)
Q Consensus 491 n 491 (689)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 4
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=195.01 Aligned_cols=226 Identities=21% Similarity=0.253 Sum_probs=145.6
Q ss_pred CCceEEEccCCcCCccccc---cccCCCCCcEEeccCCcccccchhhhh-cCCCCCCEEEccCCcCCccCc----ccccC
Q 040699 336 PSLHVFNISMNALDGSIPS---SFGNMNFLRILDLSNNQLTGEIPEHLA-VGCVNLESLVLSNNSLKGHMF----SRNFN 407 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~----~~~~~ 407 (689)
..++.+.+.++.+....-. .+..+++|++|++++|.+.+..|...+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567777777766421110 122345688888888887766666553 557778888888887775333 33346
Q ss_pred CCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCc--C--ChhhcCCCCCcEEEcCCCccccCCcc---cccCC
Q 040699 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK--I--PRWLGDLTRLQYIIMPNNHLEGPIPV---EFCQL 480 (689)
Q Consensus 408 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l 480 (689)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++...+. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 77777777777777777677777777777777777776531 1 22335677777777777777532111 24566
Q ss_pred CCCcEEeccccccccccccCCCcccCCCchhhccc---cccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCc
Q 040699 481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL---TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 557 (689)
Q Consensus 481 ~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 557 (689)
++|++|++++|.+++ ..|+.+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |
T Consensus 224 ~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp CCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred CCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 777777777776652 345555444 57777777777777 4455443 6777777777777753 3
Q ss_pred hhccCCCCCCEEeccCCcCc
Q 040699 558 HQLVELKTLEVFSVAYNNLS 577 (689)
Q Consensus 558 ~~~~~l~~L~~L~l~~N~l~ 577 (689)
. +..+++|+.|++++|+++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTS
T ss_pred h-hhhCCCccEEECcCCCCC
Confidence 2 456677777777777765
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.6e-20 Score=188.41 Aligned_cols=191 Identities=26% Similarity=0.397 Sum_probs=122.8
Q ss_pred CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (689)
++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 455555555555543 22 3555666666666666665 4443 34466666666666666553 2455666777777
Q ss_pred ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495 (689)
Q Consensus 416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 495 (689)
+++|.+.+.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 114 l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred CCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC-
Confidence 7777665432 26677777777777777764333 6667777777777777765433 677777777777777765
Q ss_pred ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
.++. +..+++|+.|++++|++++..+ +..+++|++|++++|++++
T Consensus 187 -----------~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 -----------DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----------CCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred -----------cChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 2232 6677778888888887775543 6777888888888888764
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=4.3e-21 Score=182.10 Aligned_cols=196 Identities=20% Similarity=0.275 Sum_probs=160.0
Q ss_pred cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699 412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491 (689)
Q Consensus 412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 491 (689)
+.++++++.++.. |..+. +++++|++++|.+.+..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5788898887754 44443 68999999999999777778999999999999999999888999999999999999999
Q ss_pred ccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699 492 NISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571 (689)
Q Consensus 492 ~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 571 (689)
.++. ..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 91 ~l~~-----------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 91 KITE-----------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCc-----------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 8872 34455789999999999999999998999999999999999999999888888999999999999
Q ss_pred cCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCccc
Q 040699 572 AYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLID 630 (689)
Q Consensus 572 ~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 630 (689)
++|++.|.++- |+..+ +..++..- ....|..|...+|..+.+...+++.+
T Consensus 160 ~~N~~~c~c~l~~l~~~-------l~~~~~~~--~~~~C~~P~~l~g~~l~~l~~~~~~c 210 (220)
T 2v9t_B 160 AQNPFICDCHLKWLADY-------LHTNPIET--SGARCTSPRRLANKRIGQIKSKKFRC 210 (220)
T ss_dssp CSSCEECSGGGHHHHHH-------HHHCCCBC--SCCBEEESGGGTTCBGGGSCGGGCCC
T ss_pred CCCCcCCCCccHHHHHH-------HHhCCCCc--cCCCcCCchHHcCCchhhCCHHHCcC
Confidence 99999987652 22111 11122111 12368888888888888877776654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.9e-20 Score=191.66 Aligned_cols=240 Identities=16% Similarity=0.130 Sum_probs=159.5
Q ss_pred CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE-EEc
Q 040699 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES-LVL 392 (689)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l 392 (689)
++++.++++++ .+|..+ .+++++|++++|.++.+.+++|.++++|++|+|++|++.+.++..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666777776 666654 2467777777777776656677777888888888877765677777777777665 455
Q ss_pred cCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCC-CCCCCcCChhhcCCC-CCcEEEcCCCccc
Q 040699 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN-NNLSGKIPRWLGDLT-RLQYIIMPNNHLE 470 (689)
Q Consensus 393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~-~L~~L~l~~n~l~ 470 (689)
++|++..+.+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+.+|.++. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 56777777777777778888888888777766666666666677777754 456544455566654 5777888888877
Q ss_pred cCCcccccCCCCCcEEeccc-cccccccccCCCcccCCCc-hhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699 471 GPIPVEFCQLDLLQILDISD-NNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548 (689)
Q Consensus 471 ~~~~~~~~~l~~L~~L~l~~-n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 548 (689)
.+.+..| ...+|++|++++ |.++ .+| ..|.++++|++|++++|+++.+.+..| .+|+.|.+.
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l 231 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLE------------ELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRAR 231 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCC------------CCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECT
T ss_pred CCChhhc-cccchhHHhhccCCccc------------CCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhc
Confidence 5555444 345677777764 4443 334 457778888888888888875554444 445555554
Q ss_pred CCcCCCCCchhccCCCCCCEEeccCC
Q 040699 549 NNKLNGKIPHQLVELKTLEVFSVAYN 574 (689)
Q Consensus 549 ~N~l~~~~~~~~~~l~~L~~L~l~~N 574 (689)
++.-...+|. +..+++|+.+++.++
T Consensus 232 ~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 232 STYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCCCcCcCCC-chhCcChhhCcCCCC
Confidence 4433335553 667778888887654
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.3e-22 Score=206.62 Aligned_cols=246 Identities=18% Similarity=0.223 Sum_probs=142.9
Q ss_pred hcCCCCcEEEeeCCCCCCCC----CCCCCCCCCcCEEEccCCcC---cccCChhhh------hcCCCceEEEccCCcCCc
Q 040699 284 ENNTKLRQLSLVNDSLAGPF----RLPIHSHKRLGMLDISNNNF---RGHIPLEIG------DILPSLHVFNISMNALDG 350 (689)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~------~~~~~L~~L~l~~n~l~~ 350 (689)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+ .+.+|..+. ..+++|+.|++++|.+.+
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 44555555555555554431 12344566666666666433 223333321 224455555555555443
Q ss_pred ----cccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCC---------CCccEEecc
Q 040699 351 ----SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL---------ANLMSLQLE 417 (689)
Q Consensus 351 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~L~ 417 (689)
.++..+..+++|++|++++|.+.+..+..+.. .+..+ ++|++|+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------------ALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------------HHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------------HHHHHhhhhhcccCCCCcEEECC
Confidence 23334444455555555555443222211111 01111 566666666
Q ss_pred CCccc-cccc---ccccCCCCCCEEECCCCCCCC-----cCChhhcCCCCCcEEEcCCCccc----cCCcccccCCCCCc
Q 040699 418 GNHFI-GEIS---QSLSKCSSLEGLFLNNNNLSG-----KIPRWLGDLTRLQYIIMPNNHLE----GPIPVEFCQLDLLQ 484 (689)
Q Consensus 418 ~n~~~-~~~~---~~~~~l~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~ 484 (689)
+|++. ...+ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 66654 2223 355667778888888877762 23336677778888888888775 45566777788888
Q ss_pred EEeccccccccccccCCCcccCCCchhhc--cccccceEeccCccccc----CCcccc-cCCCCCCEEeCcCCcCCCCCc
Q 040699 485 ILDISDNNISGRLDLSCNKLIGPIPPKIG--NLTRIQTLNLSHNDLTG----SIPSTF-SNLKHVESLDLSNNKLNGKIP 557 (689)
Q Consensus 485 ~L~l~~n~~~~~l~ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~~ 557 (689)
+|++++|.+++. -...++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 248 ~L~L~~n~i~~~-------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 248 ELGLNDCLLSAR-------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECTTCCCCHH-------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECCCCCCchh-------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888877521 0001345553 37889999999998886 366666 668999999999999987664
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2e-20 Score=191.51 Aligned_cols=244 Identities=18% Similarity=0.151 Sum_probs=193.4
Q ss_pred eEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc-cCcccccCCCCccE-Eec
Q 040699 339 HVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG-HMFSRNFNLANLMS-LQL 416 (689)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~-L~L 416 (689)
+.++.+++.++ .+|..+ .+++++|++++|+++ .+|...|.++++|++|+|++|++.+ +....|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56788888888 456555 368999999999998 9999999999999999999999865 55567888988775 566
Q ss_pred cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCC-CccccCCcccccCCC-CCcEEeccccccc
Q 040699 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN-NHLEGPIPVEFCQLD-LLQILDISDNNIS 494 (689)
Q Consensus 417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~~ 494 (689)
.+|++....++.|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77899988899999999999999999999977777777788888999865 677777777787774 6889999999887
Q ss_pred cccccCCCcccCCCchhhccccccceEeccC-cccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccC
Q 040699 495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573 (689)
Q Consensus 495 ~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 573 (689)
.++.......+|++|++++ |.++.+.+++|+++++|++|++++|+|+.+.+..+ .+|+.|.+.+
T Consensus 168 ------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~ 232 (350)
T 4ay9_X 168 ------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARS 232 (350)
T ss_dssp ------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTT
T ss_pred ------------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhcc
Confidence 4555555567899999985 67776666789999999999999999996655444 5666777666
Q ss_pred CcCcCCCCCccccccccCcccccCCcCCCC
Q 040699 574 NNLSGEIPEWEAQFATFNENSYEGNTFLCG 603 (689)
Q Consensus 574 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~ 603 (689)
++-...+|. +..+..++.+.+. +++.|+
T Consensus 233 ~~~l~~lP~-l~~l~~L~~l~l~-~~~~c~ 260 (350)
T 4ay9_X 233 TYNLKKLPT-LEKLVALMEASLT-YPSHCC 260 (350)
T ss_dssp CTTCCCCCC-TTTCCSCCEEECS-CHHHHH
T ss_pred CCCcCcCCC-chhCcChhhCcCC-CCcccc
Confidence 654446664 4567777777664 566664
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=176.53 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=157.5
Q ss_pred cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699 412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490 (689)
Q Consensus 412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 490 (689)
+.+++++|.++. +|..+ .+.+++|++++|.+.+..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999875 45444 3467999999999997644 5688999999999999999988888999999999999999
Q ss_pred cccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 040699 491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 570 (689)
Q Consensus 491 n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 570 (689)
|.+++ ..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+
T Consensus 91 N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 91 NRLEN-----------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp SCCCC-----------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CccCc-----------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 98873 5666799999999999999999999899999999999999999999999899999999999999
Q ss_pred ccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCcc
Q 040699 571 VAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLI 629 (689)
Q Consensus 571 l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~ 629 (689)
+++|++.|.++- |+..+..-.. ...+++ .|..|...++.++.+.....+.
T Consensus 160 L~~N~l~c~c~l~~l~~~~~~~~-~~~~~~--------~C~~P~~l~g~~l~~l~~~~~~ 210 (220)
T 2v70_A 160 LLANPFNCNCYLAWLGEWLRKKR-IVTGNP--------RCQKPYFLKEIPIQDVAIQDFT 210 (220)
T ss_dssp CCSCCEECSGGGHHHHHHHHHSC-CBCCCC--------EEEESGGGTTEEGGGSCGGGCC
T ss_pred ecCcCCcCCCchHHHHHHHHhcC-ccccCC--------ccCCChHHCCCChhhCCHHHcc
Confidence 999999998773 2222211111 112222 5777777777766665555443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1e-19 Score=171.55 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=83.8
Q ss_pred CccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecc
Q 040699 410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489 (689)
Q Consensus 410 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 489 (689)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444444444455555555555555554444444555555555555555554444445555555555555
Q ss_pred ccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEE
Q 040699 490 DNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 569 (689)
Q Consensus 490 ~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 569 (689)
+|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+ .+++|+.|
T Consensus 109 ~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L 170 (208)
T 2o6s_A 109 TNQLQS-----------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL 170 (208)
T ss_dssp SSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHH
T ss_pred CCcCcc-----------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHH
Confidence 555441 233335555666666666666655555555666666666666665543 23455666
Q ss_pred eccCCcCcCCCCCccc
Q 040699 570 SVAYNNLSGEIPEWEA 585 (689)
Q Consensus 570 ~l~~N~l~~~~~~~~~ 585 (689)
+++.|.+++.+|++++
T Consensus 171 ~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAG 186 (208)
T ss_dssp HHHHHHCTTTBBCTTS
T ss_pred HHHHHhCCceeeccCc
Confidence 6666666666665443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.4e-19 Score=168.98 Aligned_cols=131 Identities=26% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL 440 (689)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 440 (689)
+|++|++++|++. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3344444444443 333333333344444444444443333333333444444444444443333333444444444444
Q ss_pred CCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699 441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492 (689)
Q Consensus 441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 492 (689)
++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 4444443333334444444444444444443333334444444444444443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2e-19 Score=170.60 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=135.7
Q ss_pred CEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699 388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467 (689)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 467 (689)
+.++++++.++.++.. + .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 6788898888876543 2 368999999999999888888999999999999999999888899999999999999999
Q ss_pred ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699 468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL 547 (689)
Q Consensus 468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 547 (689)
+++...+..|..+++|++|++++|.+++ ..|..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINC-----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCE-----------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 9998777788999999999999998873 56778999999999999999999888888999999999999
Q ss_pred cCCcCCCC
Q 040699 548 SNNKLNGK 555 (689)
Q Consensus 548 ~~N~l~~~ 555 (689)
++|++...
T Consensus 160 ~~N~~~c~ 167 (220)
T 2v9t_B 160 AQNPFICD 167 (220)
T ss_dssp CSSCEECS
T ss_pred CCCCcCCC
Confidence 99998753
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.3e-19 Score=192.81 Aligned_cols=187 Identities=23% Similarity=0.315 Sum_probs=121.2
Q ss_pred CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (689)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.++++.. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 77888888887775 45444 267888888888877 666 236777778887777776433 433 7777777
Q ss_pred cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496 (689)
Q Consensus 417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 496 (689)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. |. ++|+.|++++|.++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS--
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC--
Confidence 7777765 333 56777777777777764 443 45677777777777775 444 44 67777777777665
Q ss_pred cccCCCcccCCCchhhcccccc-------ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699 497 LDLSCNKLIGPIPPKIGNLTRI-------QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563 (689)
Q Consensus 497 l~ls~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 563 (689)
.+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 194 ----------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 ----------SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ----------SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ----------chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3444 332 44 77777777776 345555557777777777777766666665543
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.5e-19 Score=184.10 Aligned_cols=181 Identities=22% Similarity=0.209 Sum_probs=153.6
Q ss_pred CCEEEccCCcCCccCcccccCCCCccEEeccCCccccccccccc-CCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699 387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS-KCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465 (689)
Q Consensus 387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 465 (689)
-+.++++++.+..++.. + .+.++.|+|++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 36899999988875443 2 34689999999999988888887 89999999999999997777889999999999999
Q ss_pred CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccc---cCCCCC
Q 040699 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF---SNLKHV 542 (689)
Q Consensus 466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L 542 (689)
+|+++...+..|..+++|++|+|++|.++. ..|..|.++++|+.|+|++|.+++..+..| ..+++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVV-----------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccE-----------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 999998888889999999999999998763 557789999999999999999997666666 568999
Q ss_pred CEEeCcCCcCCCCCchhccCCCC--CCEEeccCCcCcCCCC
Q 040699 543 ESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSGEIP 581 (689)
Q Consensus 543 ~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~ 581 (689)
+.|+|++|+++...+..+..++. ++.|++++|++.|.+.
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 99999999999877778887776 4889999999998764
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=9.3e-19 Score=165.99 Aligned_cols=157 Identities=21% Similarity=0.214 Sum_probs=136.4
Q ss_pred CCEEEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699 387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465 (689)
Q Consensus 387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 465 (689)
-+.+++++|.++.++. .+ .+.++.|++++|.+.+..+ ..|..+++|++|++++|.+++..+.+|.++++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3689999999887544 22 3467899999999987754 568899999999999999998777889999999999999
Q ss_pred CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEE
Q 040699 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545 (689)
Q Consensus 466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 545 (689)
+|.+++..+..|..+++|++|++++|.+++ ..|..|..+++|++|+|++|++++..|..|..+++|++|
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITC-----------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCC-----------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCe-----------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 999998888889999999999999998773 567889999999999999999998889999999999999
Q ss_pred eCcCCcCCCCCc
Q 040699 546 DLSNNKLNGKIP 557 (689)
Q Consensus 546 ~L~~N~l~~~~~ 557 (689)
++++|++....+
T Consensus 159 ~L~~N~l~c~c~ 170 (220)
T 2v70_A 159 NLLANPFNCNCY 170 (220)
T ss_dssp ECCSCCEECSGG
T ss_pred EecCcCCcCCCc
Confidence 999999986544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.8e-18 Score=165.22 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=124.8
Q ss_pred ccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490 (689)
Q Consensus 411 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 490 (689)
.+.++.+++.+... |..+ .++|++|++++|.+.+..+..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45566666665533 3322 26788888888888877778888888888888888888777667788888888888888
Q ss_pred cccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 040699 491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 570 (689)
Q Consensus 491 n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 570 (689)
|.++. ..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+
T Consensus 98 N~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 98 NQLTV-----------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp SCCCC-----------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCc-----------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 87762 44556788889999999999988 6677888899999999999999987777888899999999
Q ss_pred ccCCcCcCCCC
Q 040699 571 VAYNNLSGEIP 581 (689)
Q Consensus 571 l~~N~l~~~~~ 581 (689)
+++|++.|.++
T Consensus 166 l~~N~~~c~c~ 176 (229)
T 3e6j_A 166 LFGNPWDCECR 176 (229)
T ss_dssp CTTSCBCTTBG
T ss_pred eeCCCccCCcc
Confidence 99999998876
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.1e-19 Score=181.76 Aligned_cols=177 Identities=31% Similarity=0.318 Sum_probs=154.1
Q ss_pred cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCccccc-CCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN 441 (689)
Q Consensus 363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 441 (689)
+.++++++.+. .+|..+. ..++.|++++|.+++.....+. .+++|+.|+|++|++.+..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 68899999998 7887654 4689999999999998888887 89999999999999998888889999999999999
Q ss_pred CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh-h---ccccc
Q 040699 442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK-I---GNLTR 517 (689)
Q Consensus 442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~-~---~~l~~ 517 (689)
+|.+.+..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++ .+|.. | ..+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~------------~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS------------RFPVELIKDGNKLPK 164 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------SCCGGGTC----CTT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC------------eeCHHHhcCcccCCc
Confidence 99999777778999999999999999999888899999999999999999887 34443 4 57899
Q ss_pred cceEeccCcccccCCcccccCCCC--CCEEeCcCCcCCCC
Q 040699 518 IQTLNLSHNDLTGSIPSTFSNLKH--VESLDLSNNKLNGK 555 (689)
Q Consensus 518 L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~ 555 (689)
|+.|+|++|+++...+..+..++. ++.|+|++|++...
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 999999999999777778888877 48999999999753
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.7e-18 Score=184.48 Aligned_cols=186 Identities=28% Similarity=0.366 Sum_probs=94.5
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 391 (689)
+++.|++++|.++ .+|..+ +++|+.|++++|.++ .+| ..+++|+.|++++|+++ .+|. +. .+|++|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEE
Confidence 4555555555555 244433 245555555555555 233 23455555555555555 3444 21 1555555
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG 471 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 471 (689)
+++|.++++.. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. |. ++|+.|++++|+++
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 55555555332 35555555555555554 222 34555555555555553 333 33 55555555555555
Q ss_pred CCcccccCCCCC-------cEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccC
Q 040699 472 PIPVEFCQLDLL-------QILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN 538 (689)
Q Consensus 472 ~~~~~~~~l~~L-------~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 538 (689)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2333 322 44 55555555554 34555555555555555555555555554443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=5.1e-18 Score=168.46 Aligned_cols=169 Identities=25% Similarity=0.409 Sum_probs=96.0
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699 385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM 464 (689)
Q Consensus 385 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 464 (689)
++|+.|++++|.+... ..+..+++|++|++++|++.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 3444444444444432 123445555555555555544332 5555556666666655553 22 2555666666666
Q ss_pred CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699 465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES 544 (689)
Q Consensus 465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 544 (689)
++|++++. ..+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++..+ +..+++|++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~------------~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITD------------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCC------------C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCc------------c-hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 66666543 345566666666666666541 2 345666667777777777665443 666677777
Q ss_pred EeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699 545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578 (689)
Q Consensus 545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 578 (689)
|++++|+++.. | .+..+++|+.|++++|++..
T Consensus 183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777643 3 36666777777777776654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=8.5e-18 Score=166.84 Aligned_cols=170 Identities=27% Similarity=0.336 Sum_probs=86.2
Q ss_pred CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699 359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438 (689)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 438 (689)
+++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 344444444444443 3322 2224444444444444444332 44445555555555544432 124555555555
Q ss_pred ECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699 439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI 518 (689)
Q Consensus 439 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L 518 (689)
++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|.++ .++. +..+++|
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~------------~~~~-l~~l~~L 180 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS------------DIVP-LAGLTKL 180 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC------------CCGG-GTTCTTC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc------------cchh-hcCCCcc
Confidence 5555555532 2345555555566655555543 34555666666666666554 2222 5556666
Q ss_pred ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
+.|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 181 ~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 6666666666543 2 25666666666666666653
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.9e-17 Score=158.04 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=121.9
Q ss_pred CEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699 388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467 (689)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 467 (689)
+.++.+++.+..+.... .++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555555433321 266777777777777776777778888888888888887666667788888888888888
Q ss_pred ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699 468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL 547 (689)
Q Consensus 468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 547 (689)
++++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 888777777888899999999888876 67888889999999999999999877788999999999999
Q ss_pred cCCcCCCCCc
Q 040699 548 SNNKLNGKIP 557 (689)
Q Consensus 548 ~~N~l~~~~~ 557 (689)
++|++....+
T Consensus 167 ~~N~~~c~c~ 176 (229)
T 3e6j_A 167 FGNPWDCECR 176 (229)
T ss_dssp TTSCBCTTBG
T ss_pred eCCCccCCcc
Confidence 9999986543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.4e-17 Score=181.23 Aligned_cols=190 Identities=25% Similarity=0.310 Sum_probs=114.3
Q ss_pred CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (689)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34455556565554332 456677777777777776 5542 3347777777777777766544 566667777777
Q ss_pred cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496 (689)
Q Consensus 417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 496 (689)
++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~- 167 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD- 167 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-
Confidence 77666542 2466666666666666666632 3355666666666666666643 455666666666666665541
Q ss_pred cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
+++ +..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++.+
T Consensus 168 -----------~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 -----------IVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----------CGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred -----------chh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 222 55666666666666666543 235566666666666666654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.5e-18 Score=184.34 Aligned_cols=197 Identities=23% Similarity=0.279 Sum_probs=152.4
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391 (689)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 391 (689)
.+..+.+..+.+.+.++. ..+++|+.|++++|.+... + .+..+++|+.|+|++|++. .++. +..+++|+.|+
T Consensus 22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEE
Confidence 344456666666644432 2367889999999988753 3 5888999999999999988 4554 45688999999
Q ss_pred ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699 392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG 471 (689)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 471 (689)
|++|.+.+.. .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 94 Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 9999888743 678889999999999988754 4588889999999999988854 568888999999999999987
Q ss_pred CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccccc
Q 040699 472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS 537 (689)
Q Consensus 472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 537 (689)
..| +..+++|+.|+|++|.++ .+ +.+..+++|+.|+|++|++.+.....+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~------------~l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHIS------------DL-RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCC------------BC-GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred chh--hccCCCCCEEECcCCCCC------------CC-hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 655 888899999999998876 23 3578889999999999988765433333
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.1e-17 Score=154.93 Aligned_cols=171 Identities=20% Similarity=0.338 Sum_probs=128.7
Q ss_pred CEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcc-cccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN 514 (689)
Q Consensus 436 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~ 514 (689)
+.+++++|.+. .+|..+. .++++|++++|.+++..+. .|..+++|++|++++|.+++ ..|..|.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-----------IEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-----------BCTTTTTT
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-----------cCHhHcCC
Confidence 67788888776 4555443 3788888888888866654 47888888888888887763 56778888
Q ss_pred ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCcc
Q 040699 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNEN 593 (689)
Q Consensus 515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~ 593 (689)
+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|+.|++++|++.|.++. |+.. .+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~ 154 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKK 154 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHH
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHc
Confidence 99999999999999988888899999999999999999988899999999999999999999988763 2211 12222
Q ss_pred cccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCcc
Q 040699 594 SYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLI 629 (689)
Q Consensus 594 ~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~ 629 (689)
.+.++.. .|..|...++..+.+...+.+.
T Consensus 155 ~~~~~~~-------~C~~P~~l~~~~l~~l~~~~~~ 183 (192)
T 1w8a_A 155 SLNGGAA-------RCGAPSKVRDVQIKDLPHSEFK 183 (192)
T ss_dssp CCSGGGC-------BBCSSTTTTTSBGGGSCTTTCC
T ss_pred CCCCCCC-------CCCCChHHcCCChhhCcHhhcC
Confidence 3333332 5667777777777666665553
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=155.65 Aligned_cols=171 Identities=22% Similarity=0.326 Sum_probs=137.1
Q ss_pred CEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccc
Q 040699 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL 515 (689)
Q Consensus 436 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l 515 (689)
+.+++++|.+. .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.++. ..+..|.++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-----------i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----------LSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-----------CCTTTTTTC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-----------eCHhHccCC
Confidence 68999999998 5665443 68999999999998 567899999999999999998873 556779999
Q ss_pred cccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCccc
Q 040699 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENS 594 (689)
Q Consensus 516 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~ 594 (689)
++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|+.|++++|++.|.+.- |+..+.. ...
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~--~~~ 155 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK--SEY 155 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH--HSS
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH--hcc
Confidence 9999999999999998888999999999999999999987777899999999999999999987652 2222211 100
Q ss_pred ccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCccc
Q 040699 595 YEGNTFLCGLPLPICRSPATMSEASIGNERDDNLID 630 (689)
Q Consensus 595 ~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 630 (689)
.. .....|..|+..+|..+.+...+....
T Consensus 156 ~~-------~~~~~C~~P~~l~g~~l~~~~~~~~~~ 184 (193)
T 2wfh_A 156 KE-------PGIARCAGPGEMADKLLLTTPSKKFTC 184 (193)
T ss_dssp CC-------CSCCBEEESGGGTTCBTTTSCGGGCCC
T ss_pred CC-------CCCcCcCCchHHCCCCcccCChHHeee
Confidence 00 112378889988888888877666543
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=2.4e-16 Score=162.89 Aligned_cols=267 Identities=14% Similarity=0.126 Sum_probs=199.5
Q ss_pred hcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCc
Q 040699 284 ENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR 363 (689)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 363 (689)
..+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+..+.+.+|.+|++|+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 3446667776654 4555666677775 6888888776 55 666666665 3688888876 56667777888888899
Q ss_pred EEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC
Q 040699 364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN 443 (689)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 443 (689)
.+++++|.++ .++...|. +.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|.+ .+|+.+.+. +
T Consensus 184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp EEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred eeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence 9998888887 88888887 68888888874 477778888888888888888865 56566677777 688888884 4
Q ss_pred CCCCcCChhhcCCCCCcEEEcCCCccc-----cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699 444 NLSGKIPRWLGDLTRLQYIIMPNNHLE-----GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI 518 (689)
Q Consensus 444 ~i~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L 518 (689)
.+......+|.++++|+.+.+.+|.+. .+.+.+|.++++|+.+++.++ ++. .-..+|.++++|
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-----------I~~~aF~~c~~L 325 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-----------LGQGLLGGNRKV 325 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-----------ECTTTTTTCCSC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-----------EhhhhhcCCCCc
Confidence 455566778888888888888877654 466777888888888888743 431 344668888888
Q ss_pred ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCC-CCCEEeccCCcC
Q 040699 519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNL 576 (689)
Q Consensus 519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l 576 (689)
+.+++..| ++.+.+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 88888654 666777788888 888888888888777777777773 677888776654
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.6e-17 Score=168.50 Aligned_cols=260 Identities=11% Similarity=0.038 Sum_probs=157.4
Q ss_pred CCCCcEEEeeCCCCC--CCCCCCCCCCCCcCEEEccCCcCcccCChhhhhc--------CCCceEEEccCCcCCcccccc
Q 040699 286 NTKLRQLSLVNDSLA--GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDI--------LPSLHVFNISMNALDGSIPSS 355 (689)
Q Consensus 286 ~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~ 355 (689)
+++|+.|+|++|.+. ...... ++.+..+.+..+ .+|...|.. +++|+.+++.+ .++.+.+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 667777777777766 222111 122344444444 345555555 67777777766 666566666
Q ss_pred ccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCC----cCCccCcccccCCCCcc-EEeccCCccccccccc-c
Q 040699 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN----SLKGHMFSRNFNLANLM-SLQLEGNHFIGEISQS-L 429 (689)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~-~ 429 (689)
|.+|++|+.+++++|.+. .++..+|.++.++..+....+ ....+....|.++..|+ .+.+..... ++.. +
T Consensus 120 F~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~---l~~~~~ 195 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK---LEDEIM 195 (329)
T ss_dssp TTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC---HHHHHH
T ss_pred hhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc---HHHHHh
Confidence 777777777777777766 666666666666665555442 22333344455555555 444433221 1111 1
Q ss_pred ---cCCCCCCEEECCCCCCCCcCChhh-cCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCccc
Q 040699 430 ---SKCSSLEGLFLNNNNLSGKIPRWL-GDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLI 505 (689)
Q Consensus 430 ---~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~ 505 (689)
....+++.+.+.++-.. .....+ ..+++|+.+++++|+++.+.+.+|.++++|+.+++.+| ++.
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~---------- 263 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT---------- 263 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----------
T ss_pred hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----------
Confidence 12334455555443111 111111 23677888888887777777777888888888888776 431
Q ss_pred CCCchhhccccccc-eEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699 506 GPIPPKIGNLTRIQ-TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571 (689)
Q Consensus 506 ~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 571 (689)
..+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++..+.+.+|.++++|+.++.
T Consensus 264 -I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 264 -IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 4445678888888 888877 676677778888888888888888888777778888888887753
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=8.7e-18 Score=164.00 Aligned_cols=170 Identities=19% Similarity=0.257 Sum_probs=84.2
Q ss_pred CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699 359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438 (689)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 438 (689)
+.++..++++++.+. .++ .+..+++|++|++++|.+.... .+..+++|++|++++|++.+..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 444555666666665 333 1223556666666666655432 34445555555555555544332 4555555555
Q ss_pred ECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699 439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI 518 (689)
Q Consensus 439 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L 518 (689)
++++|++.+ ++. +.. ++|++|++++|++++. +.+..+++|
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-------------------------------------~~l~~l~~L 130 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-------------------------------------DSLIHLKNL 130 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-------------------------------------GGGTTCTTC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-------------------------------------hhhcCcccc
Confidence 555555542 221 111 4444444444444432 124445555
Q ss_pred ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699 519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579 (689)
Q Consensus 519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 579 (689)
+.|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++.+.
T Consensus 131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 5555555555433 1 344555555555555555543 3444555555555555555543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3e-17 Score=152.94 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCc
Q 040699 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS 396 (689)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 396 (689)
.+++|+.|++++|.+. .++ . +..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~ 77 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIH 77 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCC
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCC
Confidence 3444555555555444 333 1 2224444444444443
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.5e-17 Score=150.65 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=82.3
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEE
Q 040699 384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII 463 (689)
Q Consensus 384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 463 (689)
+++|+.|++++|.+.... .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 445556666665555332 34555566666666554432 23455556666666666655544555555566666666
Q ss_pred cCCCccccCCcccccCCCCCcEEeccccc-cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCC
Q 040699 464 MPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV 542 (689)
Q Consensus 464 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 542 (689)
+++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++. + .+..+++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L 183 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT------------DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKL 183 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC------------CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc------------ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCC
Confidence 66666655455555566666666666655 33 223 355566666666666666542 2 45556666
Q ss_pred CEEeCcCCcCC
Q 040699 543 ESLDLSNNKLN 553 (689)
Q Consensus 543 ~~L~L~~N~l~ 553 (689)
++|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 66666666654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.7e-17 Score=168.32 Aligned_cols=286 Identities=15% Similarity=0.100 Sum_probs=202.6
Q ss_pred cCCCCcEEEeeCCCCCCCCCCCCCC-CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccC-----
Q 040699 285 NNTKLRQLSLVNDSLAGPFRLPIHS-HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN----- 358 (689)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----- 358 (689)
.+++++.|.++++ +.......+.. +++|+.|+|++|++.. .... ...++.+..+.+..+. +.+.+|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~-~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGK-AGTYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEES-SSSSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCc-cccccccccccccccc---cCHHHhccccccc
Confidence 3457888888764 22111112222 6889999999998861 1111 0112234455555553 34456777
Q ss_pred ---CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc----cccccccccC
Q 040699 359 ---MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF----IGEISQSLSK 431 (689)
Q Consensus 359 ---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~----~~~~~~~~~~ 431 (689)
+++|+.+++++ .++ .++..+|.+|++|+.+++++|.+..+....|.++.++..+....+.. .......|..
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999999 887 89999999999999999999999888889998888888887766322 2234456777
Q ss_pred CCCCC-EEECCCCCCCCcCChh----hcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccC
Q 040699 432 CSSLE-GLFLNNNNLSGKIPRW----LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG 506 (689)
Q Consensus 432 l~~L~-~L~L~~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~ 506 (689)
+.+|+ .+.+.... .++.. .....+++.+.+.++-...........+++|+.+++++|.++.
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~----------- 240 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT----------- 240 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-----------
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-----------
Confidence 88887 55554432 22221 1235677777777653221111112348999999999998872
Q ss_pred CCchhhccccccceEeccCcccccCCcccccCCCCCC-EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699 507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVE-SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA 585 (689)
Q Consensus 507 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 585 (689)
..+.+|.++++|+++++.+| ++.+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.++...+..+.
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 44567999999999999998 8878889999999999 999999 78878889999999999999999999877666676
Q ss_pred cccccCccc
Q 040699 586 QFATFNENS 594 (689)
Q Consensus 586 ~~~~~~~~~ 594 (689)
.+.+++.++
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 666666543
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.6e-17 Score=160.62 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=139.1
Q ss_pred CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (689)
.++..++++++.+++.. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 46788889999988543 5888999999999999998 777 34559999999999999998766 88999999999
Q ss_pred ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495 (689)
Q Consensus 416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 495 (689)
+++|++.+..+ +.. ++|++|++++|.+.+. ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 99999986433 233 8999999999999853 3588999999999999999865 3 67888888888888888762
Q ss_pred ccccCCCcccCCCchhhccccccceEeccCcccccC
Q 040699 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS 531 (689)
Q Consensus 496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 531 (689)
. ..+..+++|+.|++++|++...
T Consensus 165 ------------~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 ------------T-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------------C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ------------h-HHhccCCCCCEEeCCCCcccCC
Confidence 2 4567778888888888887754
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1e-16 Score=148.38 Aligned_cols=174 Identities=22% Similarity=0.305 Sum_probs=117.7
Q ss_pred cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCCh-hhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699 412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490 (689)
Q Consensus 412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 490 (689)
++++++++.+.. +|..+. .++++|++++|.+.+..+. .|..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 456666666543 333332 2677777777777755543 477777888888888888777777788888888888888
Q ss_pred cccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchh-ccCCCCCCEE
Q 040699 491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVF 569 (689)
Q Consensus 491 n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L 569 (689)
|.+++ ..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+..+.. +. ..++..
T Consensus 88 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~ 154 (192)
T 1w8a_A 88 NKIKE-----------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKK 154 (192)
T ss_dssp CCCCE-----------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHH
T ss_pred CcCCc-----------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHc
Confidence 77663 45566788888888888888888888888888999999999999988765421 11 112222
Q ss_pred eccCCcCcCCCCCccccccccCcccccCCcCCCCC
Q 040699 570 SVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGL 604 (689)
Q Consensus 570 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 604 (689)
.+.++...|..|.. +......++..+.+.|..
T Consensus 155 ~~~~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 155 SLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp CCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCC
T ss_pred CCCCCCCCCCCChH---HcCCChhhCcHhhcCcCC
Confidence 34455666766653 334444556666776753
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1e-15 Score=158.19 Aligned_cols=265 Identities=11% Similarity=0.110 Sum_probs=180.6
Q ss_pred CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341 (689)
Q Consensus 262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 341 (689)
..++.+.+.+. +. .++...|..+ +|+.+.+.++ ++.+...+|.++ +|+.+.+.. .+. .++...|..+++|+.+
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 34445544332 22 2333334553 5777776554 555556666664 577777775 454 5666666667777777
Q ss_pred EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421 (689)
Q Consensus 342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 421 (689)
++.+|.++.+...+|. +.+|+.+.+..+ +. .++..+|.++++|+.+++..+ +..+...+|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 7777777766666666 467777777744 55 777777777777777777753 56666666766 677777774 345
Q ss_pred cccccccccCCCCCCEEECCCCCCC-----CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699 422 IGEISQSLSKCSSLEGLFLNNNNLS-----GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496 (689)
Q Consensus 422 ~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 496 (689)
..+...+|.+|++|+.+++.+|.+. ...+.+|.++++|+.+.+.+ .++.+...+|.++++|+.+++..+ ++
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-- 335 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-- 335 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC--
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc--
Confidence 6566777888888888888776554 34566788888888888884 466677778888888888888655 33
Q ss_pred cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC-CCCEEeCcCCcCC
Q 040699 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK-HVESLDLSNNKLN 553 (689)
Q Consensus 497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 553 (689)
.....+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+.
T Consensus 336 ---------~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 336 ---------QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ---------EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ---------EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 1345678888 888888888888777777788774 7888888877654
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.5e-15 Score=156.24 Aligned_cols=313 Identities=15% Similarity=0.123 Sum_probs=139.7
Q ss_pred cCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccc
Q 040699 127 ILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPL 206 (689)
Q Consensus 127 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 206 (689)
|...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++ ++ .++..+|.++.+|+.+.+..+- . .+....+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eecceee
Confidence 34456666666776666543 55455566667777777766544 33 4555566666666665554331 1 1122223
Q ss_pred cCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcC
Q 040699 207 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENN 286 (689)
Q Consensus 207 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 286 (689)
.++..++...... ........+..+.+|+.+.+.++.. .++...|..+
T Consensus 137 ~~~~~~~~~~~~~------------------------------~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c 184 (394)
T 4fs7_A 137 KGCDFKEITIPEG------------------------------VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGC 184 (394)
T ss_dssp TTCCCSEEECCTT------------------------------CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTC
T ss_pred ecccccccccCcc------------------------------ccccchhhhcccCCCcEEecCCccc--eeccccccCC
Confidence 2222111111000 0000112344455555555543321 2333344555
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699 287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366 (689)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 366 (689)
++|+.+.+..+ ++.+....|.++..|+.+.+..+... +...++. ..+|+.+.+... +......+|.++..++.+.
T Consensus 185 ~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 185 GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEE
T ss_pred CCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeEE
Confidence 55555555443 33344445555555555555443321 2222222 344555555432 2223334455555555555
Q ss_pred ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
+..+.. .+....|..+..++.+....+.+ ....|..+.+|+.+.+.++ +..+...+|.+|.+|+.+++.++ +.
T Consensus 260 ~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 260 IQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp ECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred cCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 544422 34444444455555554443321 2233444445555544432 33333444444455555444322 33
Q ss_pred CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecc
Q 040699 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489 (689)
Q Consensus 447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 489 (689)
.....+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 233344444444444444433 333333444444444444443
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=4.3e-15 Score=154.51 Aligned_cols=309 Identities=13% Similarity=0.048 Sum_probs=144.7
Q ss_pred HHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCc
Q 040699 50 SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILD 129 (689)
Q Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~ 129 (689)
++.. |.+|+.+.+..+ ++ .+...+|.+|++|+.+++..+ + ..+....+.++++|+.+.+..+.. .+..
T Consensus 66 AF~~-c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l---~~I~~~aF~~c~~L~~i~~p~~l~-----~i~~ 133 (394)
T 4fs7_A 66 AFQG-CRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-V---KMIGRCTFSGCYALKSILLPLMLK-----SIGV 133 (394)
T ss_dssp TTTT-CTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-C---CEECTTTTTTCTTCCCCCCCTTCC-----EECT
T ss_pred HhhC-CCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-c---eEccchhhcccccchhhcccCcee-----eecc
Confidence 4444 666666666533 33 334446666666776666543 2 344444555566666666554311 1223
Q ss_pred cccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCC
Q 040699 130 QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNH 209 (689)
Q Consensus 130 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 209 (689)
.+|.++..++....... ......+|.++++|+.+.+.++. . .++...|.++.+|+.+++..+ ++ .+....+.++
T Consensus 134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 35555554333333222 22344567777777777776553 2 455556777777777777655 22 2333456666
Q ss_pred CCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCC
Q 040699 210 SRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKL 289 (689)
Q Consensus 210 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 289 (689)
..|+.+.+..+.... .........|+.+.+.... . .+....+..+..+
T Consensus 208 ~~L~~i~~~~~~~~i------------------------------~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l 255 (394)
T 4fs7_A 208 ILLENMEFPNSLYYL------------------------------GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDL 255 (394)
T ss_dssp TTCCBCCCCTTCCEE------------------------------CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSC
T ss_pred cccceeecCCCceEe------------------------------ehhhcccCCCceEEECCCc-e-ecccccccccccc
Confidence 666665544432110 0001112233333332211 0 1112223445555
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccC
Q 040699 290 RQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSN 369 (689)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 369 (689)
+.+.+..+ ...+....|..+..++.+...... ++...+..+.+|+.+.+..+ +..+...+|.++.+|+.+++..
T Consensus 256 ~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 256 ESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred eeEEcCCC-cceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 55555433 222333445555555555444332 22333333445555555433 3333344455555555555543
Q ss_pred CcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699 370 NQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE 417 (689)
Q Consensus 370 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (689)
+ ++ .+...+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+++.
T Consensus 330 ~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 330 L-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp T-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred c-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 2 33 444444444445554444433 334444444444444444443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.4e-18 Score=186.07 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=66.0
Q ss_pred CCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhc
Q 040699 434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIG 513 (689)
Q Consensus 434 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~ 513 (689)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+| .+.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~------------~lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE------------NVD-GVA 505 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------------CCG-GGT
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC------------CCc-ccC
Confidence 35566666666653 343 555566666666666655 44555555666666665555554 234 455
Q ss_pred cccccceEeccCcccccCC-cccccCCCCCCEEeCcCCcCCCCCch---hccCCCCCCEEe
Q 040699 514 NLTRIQTLNLSHNDLTGSI-PSTFSNLKHVESLDLSNNKLNGKIPH---QLVELKTLEVFS 570 (689)
Q Consensus 514 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~ 570 (689)
.+++|+.|+|++|++++.. |..++.+++|+.|+|++|++++..|. .+..+++|+.|+
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5555666666666655544 55555556666666666655544332 122245555554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.2e-17 Score=180.78 Aligned_cols=204 Identities=20% Similarity=0.186 Sum_probs=130.0
Q ss_pred CCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCc-------------CCccccccccCCCCCcEEe-ccCCccc
Q 040699 308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNA-------------LDGSIPSSFGNMNFLRILD-LSNNQLT 373 (689)
Q Consensus 308 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~ 373 (689)
..++.|+.|++++|.++ .+|..+.. +++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 44677888888888887 77777665 6778888876654 3445566666777777776 5555433
Q ss_pred ccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhh
Q 040699 374 GEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWL 453 (689)
Q Consensus 374 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 453 (689)
.++ .+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+
T Consensus 424 -~L~-----------~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 424 -DLR-----------SKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp -HHH-----------HHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred -hhh-----------hhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence 222 22223333332211 236667777776665 344 667777777777777776 566677
Q ss_pred cCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCC-chhhccccccceEeccCcccccCC
Q 040699 454 GDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPI-PPKIGNLTRIQTLNLSHNDLTGSI 532 (689)
Q Consensus 454 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 532 (689)
..+++|+.|++++|++++ +| .+..+++|++|++++|.+++ .. |..+..+++|+.|+|++|++++.+
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~-----------~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-----------SAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-----------SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC-----------CCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 777777777777777775 44 67777777777777776652 33 677777777777777777777554
Q ss_pred ccc---ccCCCCCCEEeC
Q 040699 533 PST---FSNLKHVESLDL 547 (689)
Q Consensus 533 ~~~---~~~l~~L~~L~L 547 (689)
|.. +..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 422 234677777754
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=140.54 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=89.1
Q ss_pred cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699 412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491 (689)
Q Consensus 412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 491 (689)
+.++++++.+... |..+ .++|++|++++|.+. .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4677777776543 3333 246777777777776 55667777777777777777777766677777777777777777
Q ss_pred ccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 492 NISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 492 ~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
.++. ..+..|.++++|+.|+|++|.++...+..|..+++|++|++++|++..
T Consensus 89 ~l~~-----------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRC-----------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCB-----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCE-----------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6652 445567777777777777777776666667777777777777777754
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1e-15 Score=138.54 Aligned_cols=132 Identities=23% Similarity=0.280 Sum_probs=77.1
Q ss_pred CCCCEEECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699 433 SSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK 511 (689)
Q Consensus 433 ~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~ 511 (689)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ .+|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG-----------GLDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS-----------CCCHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch-----------HHHHH
Confidence 45555555555554 44455555556666666666665543 455556666666666665542 24555
Q ss_pred hccccccceEeccCcccccCCc-ccccCCCCCCEEeCcCCcCCCCCc---hhccCCCCCCEEeccCCcCc
Q 040699 512 IGNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEVFSVAYNNLS 577 (689)
Q Consensus 512 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~ 577 (689)
+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5556666666666666654322 456666666666666666665444 35666666666666666654
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=2e-15 Score=136.71 Aligned_cols=134 Identities=23% Similarity=0.235 Sum_probs=118.5
Q ss_pred CCCCccEEeccCCccc-ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699 407 NLANLMSLQLEGNHFI-GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 485 (689)
Q Consensus 407 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 485 (689)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|++++..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999987 56788889999999999999999865 77889999999999999999878888888999999
Q ss_pred EeccccccccccccCCCcccCCCc--hhhccccccceEeccCcccccCCc---ccccCCCCCCEEeCcCCcCCC
Q 040699 486 LDISDNNISGRLDLSCNKLIGPIP--PKIGNLTRIQTLNLSHNDLTGSIP---STFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 486 L~l~~n~~~~~l~ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~ 554 (689)
|++++|.++ .+| ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLK------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCC------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccC------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999987 333 678899999999999999997665 488999999999999999874
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=5.7e-15 Score=134.86 Aligned_cols=133 Identities=21% Similarity=0.245 Sum_probs=105.7
Q ss_pred CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699 435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN 514 (689)
Q Consensus 435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~ 514 (689)
.+.++++++.+. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++ ..+..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----------LPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------CCTTTTTT
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-----------eChhHccC
Confidence 456777777776 344333 3678888888888887766777888888888888887762 44455788
Q ss_pred ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8899999999999987777788889999999999999997777777888999999999999998876
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=1.8e-16 Score=176.99 Aligned_cols=218 Identities=22% Similarity=0.265 Sum_probs=116.1
Q ss_pred CCceEEEccCCcCCccccccccCCCCCcE-----EeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCC
Q 040699 336 PSLHVFNISMNALDGSIPSSFGNMNFLRI-----LDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-----L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 410 (689)
+.++.|++..|.+... +..+.....|.. ++++.|.+. ++...+..+++|+.|+|++|.+..+. ..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCC-GGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCC
Confidence 4688888988887753 333222222222 233333332 45556667899999999999998544 44558999
Q ss_pred ccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490 (689)
Q Consensus 411 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 490 (689)
|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999988 67888999999999999999998 67888999999999999999998 5677799999999999999
Q ss_pred cccccccccCCCcccCCCchhhccccc-cceEeccCcccccCCcccccCCCCCCEEeCcCC--------cCCCCCchhcc
Q 040699 491 NNISGRLDLSCNKLIGPIPPKIGNLTR-IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN--------KLNGKIPHQLV 561 (689)
Q Consensus 491 n~~~~~l~ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~ 561 (689)
|.+++ .+|..+..+.. +..|++++|.+++.+|. .|+.|++++| .+.+..+..+.
T Consensus 326 N~l~~-----------~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~ 388 (727)
T 4b8c_D 326 NPLEK-----------QFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLAT 388 (727)
T ss_dssp SCCCS-----------HHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------
T ss_pred CccCC-----------CChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhh
Confidence 98763 56666655432 23478999999877765 4566777777 34444444455
Q ss_pred CCCCCCEEeccCCcCc
Q 040699 562 ELKTLEVFSVAYNNLS 577 (689)
Q Consensus 562 ~l~~L~~L~l~~N~l~ 577 (689)
.+..+....+++|-+.
T Consensus 389 ~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 389 DLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------CCC
T ss_pred cccccceeeeeccccc
Confidence 5666677778888764
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=4.1e-16 Score=174.15 Aligned_cols=218 Identities=22% Similarity=0.226 Sum_probs=119.6
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCceE-----EEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCC
Q 040699 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHV-----FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV 385 (689)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 385 (689)
+.++.|++.++.+. .++..... ...|.. +++..|.+. ..++.|..++.|+.|+|++|.+. .+|..++. ++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG-CC
T ss_pred CccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CC
Confidence 56788999998887 44443322 112222 223333333 45778999999999999999998 89988884 99
Q ss_pred CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699 386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465 (689)
Q Consensus 386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 465 (689)
+|++|+|++|.++ ..+..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999999 45677899999999999999998 66888999999999999999998 778889999999999999
Q ss_pred CCccccCCcccccCCCC-CcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc--------ccccCCcccc
Q 040699 466 NNHLEGPIPVEFCQLDL-LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN--------DLTGSIPSTF 536 (689)
Q Consensus 466 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~ 536 (689)
+|.+++.+|..+..+.. +..+++++|.++ +.+|. .|+.|+++.| .+.+..+..+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~-----------~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~ 387 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPE-----------IPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLA 387 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCC------C---------------------------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCccc-----------CcCcc------ccceeEeecccccccccCCccccccchh
Confidence 99999888888765422 223556666554 46664 4566777776 4444444555
Q ss_pred cCCCCCCEEeCcCCcCC
Q 040699 537 SNLKHVESLDLSNNKLN 553 (689)
Q Consensus 537 ~~l~~L~~L~L~~N~l~ 553 (689)
..+..++...+++|-+.
T Consensus 388 ~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 388 TDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------CCC
T ss_pred hcccccceeeeeccccc
Confidence 66677777788888765
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2e-15 Score=133.65 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=28.8
Q ss_pred CchhhccccccceEeccCcccccC-CcccccCCCCCCEEeCcCCcCCCCCc---hhccCCCCCCEEecc
Q 040699 508 IPPKIGNLTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEVFSVA 572 (689)
Q Consensus 508 ~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~ 572 (689)
+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 333344444444444444444432 12344444455555555555443333 234444555555443
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.6e-15 Score=132.82 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=108.1
Q ss_pred CCCCccEEeccCCccc-ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699 407 NLANLMSLQLEGNHFI-GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 485 (689)
Q Consensus 407 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 485 (689)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999987 56777888899999999999988855 67888899999999999998778888888899999
Q ss_pred EeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCc---ccccCCCCCCEEeCcC
Q 040699 486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP---STFSNLKHVESLDLSN 549 (689)
Q Consensus 486 L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 549 (689)
|++++|.+++. ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDL----------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSH----------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCCh----------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999987620 123678888999999999999987665 5788899999998874
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=7.3e-14 Score=127.45 Aligned_cols=128 Identities=22% Similarity=0.218 Sum_probs=70.4
Q ss_pred cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCC
Q 040699 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN 442 (689)
Q Consensus 363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 442 (689)
+.++++++++. .+|... .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554 444333 23555555555555555444455555555555555555544444555556666666666
Q ss_pred CCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699 443 NNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 494 (689)
Q Consensus 443 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 494 (689)
|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655444445555566666666666655444444555555666655555554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.9e-14 Score=131.11 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcc--c
Q 040699 458 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS--T 535 (689)
Q Consensus 458 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~ 535 (689)
+|++|++++|.+++. ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.++. +|. .
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~ 108 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-----------IGEGLDQALPDLTELILTNNSLVE-LGDLDP 108 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-----------ECSCHHHHCTTCCEEECCSCCCCC-GGGGGG
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-----------cCcchhhcCCCCCEEECCCCcCCc-chhhHh
Confidence 444444444444432 234444444444444444431 112223444555555555555542 222 4
Q ss_pred ccCCCCCCEEeCcCCcCCCCCch----hccCCCCCCEEeccCCcC
Q 040699 536 FSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVFSVAYNNL 576 (689)
Q Consensus 536 ~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l 576 (689)
+..+++|++|++++|++.. .|. .+..+++|+.||+++|..
T Consensus 109 l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 4455555555555555542 233 244555555555555543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=7.6e-14 Score=127.14 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=85.0
Q ss_pred cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS 434 (689)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 434 (689)
.+..+.+|+.|++++|.+. .++. .....++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3556667777777777776 4543 333234777777777777664 45666777777777777776555555567777
Q ss_pred CCEEECCCCCCCCcCCh--hhcCCCCCcEEEcCCCccccCCcc---cccCCCCCcEEeccccccc
Q 040699 435 LEGLFLNNNNLSGKIPR--WLGDLTRLQYIIMPNNHLEGPIPV---EFCQLDLLQILDISDNNIS 494 (689)
Q Consensus 435 L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~ 494 (689)
|++|++++|.+. .+|. .+..+++|++|++++|++....+. .+..+++|++||+++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777775 3443 566666777777777766633221 2556666666666666543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4e-16 Score=145.37 Aligned_cols=132 Identities=24% Similarity=0.277 Sum_probs=98.6
Q ss_pred cccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCC
Q 040699 428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGP 507 (689)
Q Consensus 428 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~ 507 (689)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~------------~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA------------S 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC------------C
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC------------c
Confidence 67778888888888888775 55 6777888888888888887 45666667788888888888776 2
Q ss_pred CchhhccccccceEeccCcccccCCc-ccccCCCCCCEEeCcCCcCCCCCch----------hccCCCCCCEEeccCCcC
Q 040699 508 IPPKIGNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNNKLNGKIPH----------QLVELKTLEVFSVAYNNL 576 (689)
Q Consensus 508 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~l~~N~l 576 (689)
+| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|| +|++
T Consensus 108 l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 33 57778888888888888875433 4677888888888888888766554 266778888776 6665
Q ss_pred c
Q 040699 577 S 577 (689)
Q Consensus 577 ~ 577 (689)
+
T Consensus 185 ~ 185 (198)
T 1ds9_A 185 D 185 (198)
T ss_dssp T
T ss_pred C
Confidence 5
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=4.8e-12 Score=131.45 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=54.6
Q ss_pred chhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcC
Q 040699 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD 455 (689)
Q Consensus 376 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 455 (689)
+...+|.++.+|+.+.+..+ +..+....|.++++|+.+.+.. .+..+....|.+|.+|+.+++..+ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 33444444445555544332 2233344444555555555532 233344445555555555555433 33333445555
Q ss_pred CCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699 456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492 (689)
Q Consensus 456 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 492 (689)
+.+|+.+.+..+ ++.+...+|.++++|+.+++.++.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 555555555433 443445555555666666555543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.4e-13 Score=121.71 Aligned_cols=110 Identities=23% Similarity=0.284 Sum_probs=86.4
Q ss_pred CcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccC
Q 040699 459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN 538 (689)
Q Consensus 459 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 538 (689)
.+.+++++|+++. +|..+ .++|++|++++|.+++ ..|..|.++++|++|+|++|++++..+..|..
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITK-----------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCc-----------cChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 4566777776663 34333 2677777777777652 55677888888888888888888777778889
Q ss_pred CCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699 539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582 (689)
Q Consensus 539 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 582 (689)
+++|++|+|++|++++..+..|..+++|+.|++++|++.|.+++
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 99999999999999987777888899999999999999988763
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=3.3e-13 Score=121.81 Aligned_cols=109 Identities=24% Similarity=0.276 Sum_probs=97.3
Q ss_pred CcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccC
Q 040699 483 LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 562 (689)
Q Consensus 483 L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 562 (689)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..
T Consensus 11 ~~~l~~s~n~l~------------~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLA------------SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCS------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCCCcC------------ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 467777777766 5676553 78999999999999988999999999999999999999888888899
Q ss_pred CCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699 563 LKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 563 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
+++|+.|++++|.+++..+..+..+..++.+++.+||+.|+|+
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999999998877778889999999999999999985
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=9.8e-12 Score=129.10 Aligned_cols=294 Identities=11% Similarity=0.111 Sum_probs=188.4
Q ss_pred cccCC-CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCC---CCCCCCCCCCCCCCcCEEEccCCcCcccCChhhh
Q 040699 257 FLYHQ-HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS---LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG 332 (689)
Q Consensus 257 ~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 332 (689)
.+.++ ..|+.+.+... +. .+....|..+.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++ .++...+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence 34445 34777777643 33 3445557788888888886543 55555667778888887777654 33 5666666
Q ss_pred hcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCcc
Q 040699 333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLM 412 (689)
Q Consensus 333 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 412 (689)
..+.+|+.+.+..+ +..+...+|.++..|+.+.+.++ +. .+...+|. ..+|+.+.+..+ +..+....|.++.+++
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCc-ccccccchhhhccccc
Confidence 66778888888654 34455667788888888888664 44 66677776 456888877653 4445566677777777
Q ss_pred EEeccCCccccccccc-------------ccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccC
Q 040699 413 SLQLEGNHFIGEISQS-------------LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479 (689)
Q Consensus 413 ~L~L~~n~~~~~~~~~-------------~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 479 (689)
................ +.....+..+.+.. .+......+|.++..|+.+.+..+... +...+|.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence 7766544332111111 11223334444432 222234557777888888888765433 56667788
Q ss_pred CCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchh
Q 040699 480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 559 (689)
Q Consensus 480 l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 559 (689)
+++|+.+.+..+ ++ .....+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+
T Consensus 287 c~~L~~i~l~~~-i~-----------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 287 CPALQDIEFSSR-IT-----------ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp CTTCCEEECCTT-CC-----------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred ccccccccCCCc-cc-----------ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 888888887543 22 133456788888888888754 65566677888888888888654 66566678
Q ss_pred ccCCCCCCEEeccCCc
Q 040699 560 LVELKTLEVFSVAYNN 575 (689)
Q Consensus 560 ~~~l~~L~~L~l~~N~ 575 (689)
|.++++|+.+++.++.
T Consensus 353 F~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSR 368 (394)
T ss_dssp GTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECCce
Confidence 8888888888887764
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.5e-15 Score=140.02 Aligned_cols=138 Identities=24% Similarity=0.296 Sum_probs=116.8
Q ss_pred ccCCCCCCEEECCCCCCCCcCCh------hhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCC
Q 040699 429 LSKCSSLEGLFLNNNNLSGKIPR------WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCN 502 (689)
Q Consensus 429 ~~~l~~L~~L~L~~n~i~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n 502 (689)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-------- 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-------- 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--------
Confidence 45556667777777776666555 89999999999999999996 55 8899999999999999987
Q ss_pred cccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCc-hhccCCCCCCEEeccCCcCcCCCC
Q 040699 503 KLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 503 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
.+|..+..+++|++|++++|++++ +| .+..+++|++|++++|+++...+ ..+..+++|+.|++++|++.+.+|
T Consensus 84 ----~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 84 ----KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp ----SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred ----cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 577788888999999999999996 44 68889999999999999996543 578899999999999999988766
Q ss_pred C
Q 040699 582 E 582 (689)
Q Consensus 582 ~ 582 (689)
.
T Consensus 158 ~ 158 (198)
T 1ds9_A 158 E 158 (198)
T ss_dssp T
T ss_pred c
Confidence 5
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=9.2e-13 Score=119.25 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=79.8
Q ss_pred cEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCC
Q 040699 460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL 539 (689)
Q Consensus 460 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 539 (689)
+.+++++|+++ .+|..+. ++|++|++++|.+++ ..|..|.++++|++|+|++|+++++.+..|..+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITK-----------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccc-----------cCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 45666666665 3343332 667777777776652 456677778888888888888887666677888
Q ss_pred CCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 540 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 540 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
++|++|+|++|+|++..+..|..+++|+.|++++|++.|.++
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 888888888888887766678888888899999998887765
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=9.2e-13 Score=119.25 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=95.8
Q ss_pred cEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699 484 QILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563 (689)
Q Consensus 484 ~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 563 (689)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|+|++..+..|..+
T Consensus 15 ~~l~~~~n~l~------------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA------------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCS------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCC------------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 56777777665 6676654 799999999999999989999999999999999999998877778899
Q ss_pred CCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 564 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 605 (689)
++|+.|++++|.++...+..+..+..++.+++.+|++.|+|+
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999999999997777768889999999999999999875
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=3.2e-12 Score=130.47 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=34.8
Q ss_pred hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699 510 PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581 (689)
Q Consensus 510 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 581 (689)
..|.++++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..+..++ |+.|++.+|++.|.+.
T Consensus 50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 3444445555555555555544444555555555555555555544433333333 5555555555554443
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=2.5e-10 Score=117.98 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=74.0
Q ss_pred CCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCC
Q 040699 307 IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVN 386 (689)
Q Consensus 307 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 386 (689)
+..+.+|+.+.+..+ +. .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++..+|.+|.+
T Consensus 213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence 333444444444332 11 233333333445555555443 33344445555555666555432 33 555555555666
Q ss_pred CCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCC
Q 040699 387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT 457 (689)
Q Consensus 387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 457 (689)
|+.+.+.++.+..+...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.++.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 666666555555555556666666666666533 44445556666666666666543 4434445565543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=4.8e-13 Score=136.78 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=50.8
Q ss_pred CCceEEEccCCcCCccccccccC-----CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccc-----
Q 040699 336 PSLHVFNISMNALDGSIPSSFGN-----MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN----- 405 (689)
Q Consensus 336 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----- 405 (689)
+.|+.|++++|.++......+.. .++|++|++++|.+.+.....+...+++|++|++++|.+.+.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666655332222221 24666666666666533333333334455566666555543332222
Q ss_pred cCCCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCC
Q 040699 406 FNLANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLS 446 (689)
Q Consensus 406 ~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~ 446 (689)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 1234444444444444321 1222233444444444444443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=5.1e-13 Score=136.62 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=32.4
Q ss_pred cCCCCCCCEEeCCCCcCccC----CCccccCCCCCcEEEccceeeeee----cCcccccCCCCCCEEeccCCcce
Q 040699 132 LCSLMHLQELYMADNDLRGS----LPWCLANMTSLRILYVSYNQLTGS----ISSSPLVHLTSIEKLYLSNNHFR 198 (689)
Q Consensus 132 l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~ 198 (689)
+..+++|++|+|++|.+++. ++..+...++|++|++++|.+++. ++. .+...++|++|++++|.++
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCC
Confidence 34455555555555555432 133444455566666666555421 111 2233455666666666554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=2.9e-11 Score=123.35 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=87.9
Q ss_pred CCchhhccccccceEeccC-cccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699 507 PIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA 585 (689)
Q Consensus 507 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 585 (689)
.+|. +..+++|+.|+|++ |.++++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|.+++..+..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 5787 99999999999996 999988889999999999999999999999999999999999999999999977666655
Q ss_pred cccccCcccccCCcCCCCCC
Q 040699 586 QFATFNENSYEGNTFLCGLP 605 (689)
Q Consensus 586 ~~~~~~~~~~~~n~~~c~~~ 605 (689)
.+. ++.+.+.+|++.|+|.
T Consensus 102 ~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCC-CCEEECCSSCCCCCGG
T ss_pred cCC-ceEEEeeCCCccCCCc
Confidence 444 8999999999999985
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=1.6e-09 Score=111.93 Aligned_cols=289 Identities=10% Similarity=0.056 Sum_probs=169.4
Q ss_pred cCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCc
Q 040699 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL 338 (689)
Q Consensus 259 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 338 (689)
....+++.+.+... ++ .++...|..+.+|+.+.+.. .++.+...+|.++ +|+.+.+..+ +. .+....+.. .+|
T Consensus 43 ~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCC
T ss_pred ccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCc
Confidence 33444555555322 22 33344456666666666653 3555555566665 4666665543 33 444555543 356
Q ss_pred eEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc------------cCccccc
Q 040699 339 HVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG------------HMFSRNF 406 (689)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~ 406 (689)
+.+.+..+ +......+|.++ +++.+.+..+ ++ .+....|..+.+++.+.+..+.... .....+.
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 66666544 222334455544 4555554432 33 4555555556666666655432211 1112233
Q ss_pred CCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEE
Q 040699 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 486 (689)
Q Consensus 407 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 486 (689)
....+..+.+.... .......+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 192 ~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 192 AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 44555555554432 2344556667777888777654 33345567777888888888765 555666677788888888
Q ss_pred eccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 040699 487 DISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 566 (689)
Q Consensus 487 ~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 566 (689)
.+..+--. .....|.++++|+.+++.++.++.+.+.+|.++.+|+.++|..+ ++.+...+|.++++|
T Consensus 269 ~l~~~i~~------------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 269 NFYAKVKT------------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp EECCCCSE------------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccccccee------------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 77654221 33456778888888888887777677778888888888888654 655666678888888
Q ss_pred CEEeccCC
Q 040699 567 EVFSVAYN 574 (689)
Q Consensus 567 ~~L~l~~N 574 (689)
+.+.+..+
T Consensus 336 ~~i~ip~~ 343 (379)
T 4h09_A 336 STISYPKS 343 (379)
T ss_dssp CCCCCCTT
T ss_pred CEEEECCc
Confidence 87776543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=6.6e-09 Score=105.08 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=48.1
Q ss_pred CCCCCcEEeccccccccccccCCCcccCCCchhh---ccccccceEeccCcccccC----CcccccCCCCCCEEeCcCCc
Q 040699 479 QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI---GNLTRIQTLNLSHNDLTGS----IPSTFSNLKHVESLDLSNNK 551 (689)
Q Consensus 479 ~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~ 551 (689)
.+++|++|++++|.+.. ..+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~-----------~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN-----------VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHH-----------HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCch-----------HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35677777777666542 111111 2467788888887777643 22233456788888888887
Q ss_pred CCCCCchhccC-CCCCCEEeccCCc
Q 040699 552 LNGKIPHQLVE-LKTLEVFSVAYNN 575 (689)
Q Consensus 552 l~~~~~~~~~~-l~~L~~L~l~~N~ 575 (689)
|+...-..+.. + ...+++++++
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 76433333332 2 2457777775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=4.7e-09 Score=106.12 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=90.0
Q ss_pred ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCccccc--CCCCCcEEecccc--ccccccccCCC
Q 040699 427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFC--QLDLLQILDISDN--NISGRLDLSCN 502 (689)
Q Consensus 427 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~l~ls~n 502 (689)
..+..+|+|+.|.+++|.-. .++. + .+++|++|++..|.+.......+. .+++|++|+|+.+ ...+ +.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~-----~~ 237 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF-----DG 237 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC-----CS
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc-----ch
Confidence 44566777777777766311 1222 3 267888888887776543333333 6788888888532 1110 00
Q ss_pred cccCCCchhh--ccccccceEeccCcccccCCcccc---cCCCCCCEEeCcCCcCCCCC----chhccCCCCCCEEeccC
Q 040699 503 KLIGPIPPKI--GNLTRIQTLNLSHNDLTGSIPSTF---SNLKHVESLDLSNNKLNGKI----PHQLVELKTLEVFSVAY 573 (689)
Q Consensus 503 ~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~ 573 (689)
.+. .+...+ ..+++|+.|+|++|.+....+..+ ..+++|++|+|+.|.+.... +..+..+++|+.|++++
T Consensus 238 ~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 238 DMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 010 111122 357899999999999874333333 25789999999999998643 33344569999999999
Q ss_pred CcCcC
Q 040699 574 NNLSG 578 (689)
Q Consensus 574 N~l~~ 578 (689)
|.++.
T Consensus 317 n~i~d 321 (362)
T 2ra8_A 317 NYLSD 321 (362)
T ss_dssp BBCCH
T ss_pred CcCCH
Confidence 98763
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.6e-07 Score=85.55 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=68.2
Q ss_pred chhhcCCCCCCEEECCCC-CCCCcchhHHhh---cCCCCcEEECCCCcCCcccC---CCCCCCCCCCCeeeCCCCccccC
Q 040699 24 AQELHSFTNLEYLSLDFS-SLHISLLQSIAS---IFPSLKNLSMSGCEVNGLVR---GQGFPHFKSLEHLDMSSTRIALN 96 (689)
Q Consensus 24 ~~~~~~~~~L~~L~L~~~-~i~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~ 96 (689)
...+...+.|++|+|++| .+.......+.. ..++|++|+|++|.+.+.-. ...+...+.|++|+|++|.++..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445566677777777776 666554443322 14667777777776653210 01233446677777777776211
Q ss_pred C--ccchhhhhcCCCccEEEC--CCCCCCCCCCccCccccCCCCCCCEEeCCCCcCc
Q 040699 97 T--SFLQIIGESMPSLKYLSL--SNSTRGTNSSRILDQGLCSLMHLQELYMADNDLR 149 (689)
Q Consensus 97 ~--~~~~~~~~~l~~L~~L~L--s~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 149 (689)
+ .+...+.. .++|++|+| ++|.++..........+...++|++|+|++|.+.
T Consensus 109 g~~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 12222333 566777777 5564433221111224556677888888877764
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=6e-08 Score=85.63 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=37.0
Q ss_pred CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCC-CCCcchhHHhhc---CCCCcEEECCCCc-CCcccCCCCCCCCC
Q 040699 7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSS-LHISLLQSIASI---FPSLKNLSMSGCE-VNGLVRGQGFPHFK 81 (689)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~---l~~L~~L~Ls~n~-l~~~~~~~~~~~l~ 81 (689)
|++||++++.|++ .....+..|++|++|+|++|. +++..+..+... +++|++|+|++|. +++.-. ..+.+++
T Consensus 63 L~~LDLs~~~Itd--~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 63 IQAIDATDSCIMS--IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp EEEEEEESCCCCG--GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred EeEEeCcCCCccH--HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 4555555555444 233344555555555555552 444444444431 1245555555543 332111 1234445
Q ss_pred CCCeeeCCCC
Q 040699 82 SLEHLDMSST 91 (689)
Q Consensus 82 ~L~~L~L~~~ 91 (689)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555544
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.1e-07 Score=86.49 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=19.4
Q ss_pred cccCCCCCCEEECCCC-CCCCc----CChhhcCCCCCcEEEcCCCccc
Q 040699 428 SLSKCSSLEGLFLNNN-NLSGK----IPRWLGDLTRLQYIIMPNNHLE 470 (689)
Q Consensus 428 ~~~~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~ 470 (689)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3444555555555555 44421 1223333444555555554443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=1.5e-06 Score=83.07 Aligned_cols=104 Identities=24% Similarity=0.242 Sum_probs=70.3
Q ss_pred EeCCCCCCCCccccchh-hcCCCCCCEEECCCCCCCCcc-hhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699 10 LYLLFNNFTDIATTAQE-LHSFTNLEYLSLDFSSLHISL-LQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD 87 (689)
Q Consensus 10 L~Ls~n~i~~~~~~~~~-~~~~~~L~~L~L~~~~i~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 87 (689)
++++.|+...+...... ..++++|++|+|++|.++... ++.....+++|++|+|++|.+.+......+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 66777754432222222 256899999999999998732 333434499999999999999865322234444 899999
Q ss_pred CCCCccccCCccc------hhhhhcCCCccEEECC
Q 040699 88 MSSTRIALNTSFL------QIIGESMPSLKYLSLS 116 (689)
Q Consensus 88 L~~~~~~~~~~~~------~~~~~~l~~L~~L~Ls 116 (689)
+++|.+ .+.++ ..+...+|+|+.||=.
T Consensus 227 L~~Npl--~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 227 LDGNSL--CDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp CTTSTT--GGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred ccCCcC--ccccCcchhHHHHHHHHCcccCeECCc
Confidence 999998 43332 2334459999999743
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=4.7e-07 Score=86.48 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=19.8
Q ss_pred hhccccccceEeccCcccccCCcccccCCC--CCCEEeCcCCcCCC
Q 040699 511 KIGNLTRIQTLNLSHNDLTGSIPSTFSNLK--HVESLDLSNNKLNG 554 (689)
Q Consensus 511 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~ 554 (689)
.+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 344455555555555555433 1122222 55555555555554
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.01 E-value=3.7e-06 Score=70.99 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=70.0
Q ss_pred ceEeccCcccc-cCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCccccc
Q 040699 519 QTLNLSHNDLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENSYE 596 (689)
Q Consensus 519 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~ 596 (689)
..++.+++.++ ..+|..+. .+|++|+|++|+|+.+.++.|..+++|+.|+|++|++.|.+.- |+..+..-.....
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~- 87 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA- 87 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG-
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc-
Confidence 47889999987 34554433 5799999999999988888899999999999999999987652 2222211110000
Q ss_pred CCcCCCCCCCCCCCCCCCCCcccCCCCCCCCc
Q 040699 597 GNTFLCGLPLPICRSPATMSEASIGNERDDNL 628 (689)
Q Consensus 597 ~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 628 (689)
......|.+|...+|..+.++..+++
T Consensus 88 ------~~~~~~C~~P~~l~g~~l~~l~~~~l 113 (130)
T 3rfe_A 88 ------PYRDLRCVAPPALRGRLLPYLAEDEL 113 (130)
T ss_dssp ------GGTTCBCCBSTTTTTCBGGGCCHHHH
T ss_pred ------cccCcEeCcChHHcCCCcccCCHHHh
Confidence 01123788898888887776665443
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=3.4e-06 Score=74.42 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=45.7
Q ss_pred CceEEEccCCcCCccccccccCCCCCcEEeccCCc-ccccchhhhhcC---CCCCCEEEccCCc-CCccCcccccCCCCc
Q 040699 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ-LTGEIPEHLAVG---CVNLESLVLSNNS-LKGHMFSRNFNLANL 411 (689)
Q Consensus 337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~---l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 411 (689)
.|+.|++++|.++...-..+.++++|++|+|++|. +++..-..+... +++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666666666655444455666666677666663 543333333321 2356666666653 555444444455555
Q ss_pred cEEeccCCc
Q 040699 412 MSLQLEGNH 420 (689)
Q Consensus 412 ~~L~L~~n~ 420 (689)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.00015 Score=60.99 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=41.9
Q ss_pred cccCCCccc-CCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699 497 LDLSCNKLI-GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554 (689)
Q Consensus 497 l~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 554 (689)
++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.-
T Consensus 13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 344444443 24554433 479999999999998888889999999999999998863
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00015 Score=65.19 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=61.6
Q ss_pred hhhcCCCCCCEEECCCC-CCCCcchhHHhhc---CCCCcEEECCCCcCCcccCC---CCCCCCCCCCeeeCCCCccccCC
Q 040699 25 QELHSFTNLEYLSLDFS-SLHISLLQSIASI---FPSLKNLSMSGCEVNGLVRG---QGFPHFKSLEHLDMSSTRIALNT 97 (689)
Q Consensus 25 ~~~~~~~~L~~L~L~~~-~i~~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~ 97 (689)
..+.+-+.|++|+|+++ .|.+.....++.. -+.|+.|+|++|.+.+.... ..+..-+.|++|+|++|.|+..+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455566777777664 6665544433322 34677777777766532111 02223466777777777763211
Q ss_pred c--cchhhhhcCCCccEEECCCC---CCCCCCC-ccCccccCCCCCCCEEeCCCCcC
Q 040699 98 S--FLQIIGESMPSLKYLSLSNS---TRGTNSS-RILDQGLCSLMHLQELYMADNDL 148 (689)
Q Consensus 98 ~--~~~~~~~~l~~L~~L~Ls~~---~~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l 148 (689)
. +.+.+.. .+.|+.|+|+++ .++.... .+. ..+..-+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~-N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhh-CCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCCc
Confidence 1 1122222 345777777654 2232111 122 2455556777777776543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00014 Score=65.45 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=64.2
Q ss_pred CCCCcEEECCCC-cCCccc---CCCCCCCCCCCCeeeCCCCccccCC--ccchhhhhcCCCccEEECCCCCCCCCCCccC
Q 040699 55 FPSLKNLSMSGC-EVNGLV---RGQGFPHFKSLEHLDMSSTRIALNT--SFLQIIGESMPSLKYLSLSNSTRGTNSSRIL 128 (689)
Q Consensus 55 l~~L~~L~Ls~n-~l~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~ 128 (689)
-+.|++|+|+++ .+...- -...+..-+.|+.|+|++|.+++.+ .+.+.+.. .+.|+.|+|+.|.++..+....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHHH
Confidence 467777777764 554210 0113445567777777777773221 12223333 5677777777775554332222
Q ss_pred ccccCCCCCCCEEeCCCCcC---cc----CCCccccCCCCCcEEEccceee
Q 040699 129 DQGLCSLMHLQELYMADNDL---RG----SLPWCLANMTSLRILYVSYNQL 172 (689)
Q Consensus 129 ~~~l~~l~~L~~L~L~~n~l---~~----~~~~~~~~l~~L~~L~L~~n~l 172 (689)
...+..-+.|++|+|+++.. .. .+...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23555566677777765432 21 1223455556777777776654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.14 E-value=5.4 Score=30.96 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=27.6
Q ss_pred CccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccce
Q 040699 125 SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYN 170 (689)
Q Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 170 (689)
..|....|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3355556667777777776654 44455666667777766666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.36 E-value=5.1 Score=31.13 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC
Q 040699 348 LDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394 (689)
Q Consensus 348 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 394 (689)
++.+...+|.+|.+|+.+.|..+ ++ .+...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33344455555555555555543 33 45555555555555555543
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.31 E-value=28 Score=21.25 Aligned_cols=9 Identities=0% Similarity=0.224 Sum_probs=3.6
Q ss_pred eeeehhhhH
Q 040699 636 ITFTTSYVI 644 (689)
Q Consensus 636 ~~~~~~~~~ 644 (689)
.+++++.++
T Consensus 14 AGiVvG~v~ 22 (38)
T 2k1k_A 14 VAVIFGLLL 22 (38)
T ss_dssp HHHHHHHHH
T ss_pred eeeehHHHH
Confidence 334444433
Done!