BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040700
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/513 (44%), Positives = 317/513 (61%), Gaps = 26/513 (5%)
Query: 22 ENFLQCLXXXXXXXXXXXXXXYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHES 81
ENFL+C YT + + S+L S ++NLRF + TT KPLVIV + S
Sbjct: 5 ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 82 HVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQA 141
H+QAT++CSKK GLQIR RSGGHD +G+SY+S VPFV++D+ N+ SI I + +TAWV+A
Sbjct: 65 HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 142 GATASKIH----------GFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVD 191
GAT +++ FP G CPT+ +MR +GL+ DNI+DA +V+
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 192 VQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATD 250
V G++LDRKSMGEDLFWAIRGGG +F +I +WKIKLV VP T+F V K +E G
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 251 LVAKWQQVAADKLDQDL-FIRLFI--NAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQ 307
L KWQ +A K D+DL + FI N + + + TV F ++F G + L+ LM +
Sbjct: 245 LFNKWQNIAY-KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303
Query: 308 SFPELGIQKKDCFEMRWVESVLFWFD----QPIGTPLEVLLNRIPKSQVSLKRKSDYVQE 363
SFPELGI+K DC E W+++ +F+ E+LL+R + + K DYV++
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKK 363
Query: 364 PIPKTGLESIWKLMIE--LGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWN 421
PIP+T + I + + E +G PYGGIM EI + PFPHRAG ++++ Y+A+W
Sbjct: 364 PIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 422 QPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGT---YEEGKIYGI 478
+ E +++N R+ Y TPYVS+NPR A+LNYRD+D+G + + Y + +I+G
Sbjct: 424 KQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGE 481
Query: 479 KYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISP 511
KYF NF+RLV+VKT VDP+NFF EQSIP P
Sbjct: 482 KYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/505 (44%), Positives = 306/505 (60%), Gaps = 35/505 (6%)
Query: 20 VEENFLQCLXXXXXXXXXXXXXXYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKH 79
VE +FL CL Y S+ +++SV S VRN++F + T+KPL I+ +
Sbjct: 9 VERDFLTCLTKDIPPRQL-----YAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTN 63
Query: 80 ESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVP--FVILDMFNLRSINISLTDETA 137
SH+QA V+C ++ G++IR+RSGGHDY+GLSY S P F ++DM +R+++I TA
Sbjct: 64 ASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATA 123
Query: 138 WVQAGA----------TASKIHGFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDA 187
WV +GA AS GFPAGVC T+ ++RK+G + DN++DA
Sbjct: 124 WVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDA 183
Query: 188 QIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQG 247
++VD QGR+LDRK+MGED FWAIRGGG SF ++ SW++KL+ VP VTVF+V K +++G
Sbjct: 184 KVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEG 243
Query: 248 ATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQ 307
A DLV KWQ VA L DL IR+ G+ + F A++LG + L+ LM
Sbjct: 244 AIDLVTKWQTVAP-ALPDDLMIRIM-------AMGQGAM---FEALYLGTCKDLVLLMTA 292
Query: 308 SFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPK 367
FPELG+ C EM W+ESV + P GT + LLNR + K KSDYV EPIPK
Sbjct: 293 RFPELGMNATHCKEMTWIESVPYIPMGPKGT-VRDLLNRTSNIKAFGKYKSDYVLEPIPK 351
Query: 368 TGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEV 427
+ E I+ +++ G M +PYGG ++ +P + TPFP R+G +F IQY W G
Sbjct: 352 SDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAA 411
Query: 428 TNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSN----TNGTYEEGKIYGIKYFKN 483
TR Y+ MTPYVSKNPR+A++NYRD+D+G N TY GK++G KYFK
Sbjct: 412 LP--TQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKG 469
Query: 484 NFDRLVRVKTSVDPDNFFTYEQSIP 508
NF+RL R K +DP+++F EQSIP
Sbjct: 470 NFERLARTKGKIDPEDYFRNEQSIP 494
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/506 (40%), Positives = 294/506 (58%), Gaps = 35/506 (6%)
Query: 20 VEENFLQCLXXXXXXXXXXXXXXYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKH 79
+E+FL CL Y S+ ++ SVL +RN R+++P +KPL I+
Sbjct: 7 AKEDFLGCLVKEIPPRLL-----YAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQ 61
Query: 80 ESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVP--FVILDMFNLRSINISLTDETA 137
SH+Q+ V+C ++ ++IR+RSGGHDY+GLSY S P F ++D+ +R++ + TA
Sbjct: 62 VSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTA 121
Query: 138 WVQAGA----------TASKIHGFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDA 187
WV +GA AS FPAGVCPT+ ++RK+G++ +N++D
Sbjct: 122 WVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDV 181
Query: 188 QIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQG 247
++VD G++ D+KSMG+D FWA+RGGG SF ++++W++KL+ VP TVT+F++ KT+ +G
Sbjct: 182 KLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241
Query: 248 ATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQ 307
A D++ KW QV A +L DL IR+ + K +F AM+LG + L LM
Sbjct: 242 AVDIINKW-QVVAPQLPADLMIRII----------AQGPKATFEAMYLGTCKTLTPLMSS 290
Query: 308 SFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPK 367
FPELG+ C EM W++S+ F + LLNR + + KSDYV +P PK
Sbjct: 291 KFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPK 350
Query: 368 TGLESIWKL-MIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIE 426
T E I +++ G M ++PYG +S P + TPFPHR G +F IQY W PG
Sbjct: 351 TVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAA 410
Query: 427 VTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGS----NTNGTYEEGKIYGIKYFK 482
L+ ++ Y M PYVSKNPR+A+ NYRDID+G N TY GK++G KYFK
Sbjct: 411 AAP--LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFK 468
Query: 483 NNFDRLVRVKTSVDPDNFFTYEQSIP 508
NF+RL K VDP ++F EQSIP
Sbjct: 469 GNFERLAITKGKVDPTDYFRNEQSIP 494
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 307 bits (786), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 181/482 (37%), Positives = 269/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGGH
Sbjct: 21 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 80
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 81 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 140
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
CPT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 141 CPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 200
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D F
Sbjct: 201 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEED-----FTL 254
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
+V G + EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 255 SVLGGAD-EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 311
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 312 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 370
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 371 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 430
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 431 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 490
Query: 507 IP 508
IP
Sbjct: 491 IP 492
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 307 bits (786), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 181/482 (37%), Positives = 269/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGGH
Sbjct: 46 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 105
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 106 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 165
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
CPT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 166 CPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 225
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D F
Sbjct: 226 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEED-----FTL 279
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
+V G + EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 280 SVLGGAD-EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 336
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 337 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 395
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 396 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 455
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 456 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 515
Query: 507 IP 508
IP
Sbjct: 516 IP 517
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 267/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGGH
Sbjct: 27 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 86
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 87 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 146
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
CPT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 147 CPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 206
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D + +
Sbjct: 207 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEEDFTLSVLGG 265
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
A EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 266 A------DEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 317
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 318 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 376
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 377 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 436
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 437 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 496
Query: 507 IP 508
IP
Sbjct: 497 IP 498
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 267/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGGH
Sbjct: 27 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 86
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 87 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 146
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
CPT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 147 CPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 206
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D + +
Sbjct: 207 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEEDFTLSVLGG 265
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
A EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 266 A------DEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 317
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 318 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 376
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 377 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 436
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 437 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 496
Query: 507 IP 508
IP
Sbjct: 497 IP 498
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 268/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGGH
Sbjct: 21 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 80
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 81 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 140
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
PT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 141 APTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 200
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D F
Sbjct: 201 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEED-----FTL 254
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
+V G + EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 255 SVLGGAD-EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 311
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 312 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 370
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 371 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 430
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 431 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 490
Query: 507 IP 508
IP
Sbjct: 491 IP 492
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 268/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGGH
Sbjct: 21 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHS 80
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 81 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 140
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
PT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 141 APTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 200
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D F
Sbjct: 201 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEED-----FTL 254
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
+V G + EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 255 SVLGGAD-EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 311
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 312 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 370
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 371 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 430
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 431 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 490
Query: 507 IP 508
IP
Sbjct: 491 IP 492
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 268/482 (55%), Gaps = 29/482 (6%)
Query: 46 SNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105
S++ F+ L ++N F KP I+ + + T+ C +K IR+RSGG
Sbjct: 24 SDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGAS 83
Query: 106 YDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH----------GFPAGV 155
Y+GLSY S+ PF+++D+ NL ++I L ETAWV++G+T +++ GF AG
Sbjct: 84 YEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGW 143
Query: 156 CPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGA 215
CPT+ M RK+GL+ DN+VDA ++D G ILDR++MGED+FWAIRGGG
Sbjct: 144 CPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGG 203
Query: 216 ASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATDLVAKWQQVAADKLDQDLFIRLFIN 274
+ I +WKIKL+ VPE VTVFRV K + AT L+ KWQ V A++L++D F
Sbjct: 204 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFV-AEELEED-----FTL 257
Query: 275 AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQ 334
+V G + EK V ++ + G S FPELG+ ++D EM W ES F +
Sbjct: 258 SVLGGAD-EKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES--FAYLA 314
Query: 335 PIGTPLEVLLNRIPK-SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
+ T + L NR K + + K K D +EP+P + + + + + N +GG
Sbjct: 315 GLET-VSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQ 373
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
MS+I + TPFPHR+G ++Y WNQ + +L+ YE M P+VSKNPR
Sbjct: 374 MSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLG 433
Query: 454 FLNYRDIDIG-------SNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQS 506
++N+ D+D+G + N E + +G YF +N++RL+R KT +DP+N F + QS
Sbjct: 434 YVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQS 493
Query: 507 IP 508
IP
Sbjct: 494 IP 495
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/475 (22%), Positives = 193/475 (40%), Gaps = 80/475 (16%)
Query: 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINI 130
P I + +H+Q+ V C+KK L++ +SGGH Y + +++ + + + I
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDV-I 95
Query: 131 SLTDET--AWVQAGATASKI---------HGFPAGVCPTLXXXXXXXXXXXXNMMRKFGL 179
S D+T A V+ GA + G CP + GL
Sbjct: 96 SYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGL 155
Query: 180 SVDNIVDAQIVDVQGRILDRKSM-GEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVF 238
+VD++V +V GRI++ + DLFW I+G G ++F ++ WK+ P+ +T F
Sbjct: 156 AVDSVVGVTVVLADGRIVEASATENADLFWGIKGAG-SNFGIVAVWKLATFPAPKVLTRF 214
Query: 239 RV----------VKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKV 288
V +K +E A + A+W VA +++ F A N EG
Sbjct: 215 GVTLNWKNKTSALKGIE--AVEDYARW--VAPREVN---FRIGDYGAGNPGIEG------ 261
Query: 289 SFVAMFLGQTEKLLSLMKQSFPEL--GIQKKDCFEMRWVESVLFW--FDQPIGTPLEVLL 344
++ G E+ + + L G + W+ESVL + FD + +
Sbjct: 262 ----LYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVE 317
Query: 345 NRIPKSQVSLKRKSDYVQE------PIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIP 398
N KS K D V+ + + W +++ +GG S++
Sbjct: 318 NFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDV---------HGGKNSQVT 368
Query: 399 A---TETPFPHRAGNIFKIQYSANW--NQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREA 453
ET +PHR ++ IQ+ + NQ E + ++L+ + ++T + K+
Sbjct: 369 KVTNAETAYPHR-DKLWLIQFYDRYDNNQTYPETSFKFLD---GWVNSVTKALPKSDWGM 424
Query: 454 FLNYRDIDIGSNTNGTYEEGKIYGIK-YFKNNFDRLVRVKTSVDPDNFFTYEQSI 507
++NY D + + Y K Y+ N RL ++K DP + F Y Q++
Sbjct: 425 YINYADPRMDRD----------YATKVYYGENLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 111/485 (22%), Positives = 185/485 (38%), Gaps = 69/485 (14%)
Query: 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSIN 129
+P V+ V V + G +I +RSGGH ++G V VI DM +R +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVI-DMSQMRQVF 113
Query: 130 ISLTDETAWVQAGATASKIH---------GFPAGVCPTLXXXXXXXXXXXXNMMRKFGLS 180
V+ GAT + + PAGVCP + + R+ G+
Sbjct: 114 YDSGKRAFAVEPGATLGETYRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGVV 173
Query: 181 VDNI--VDAQIVDVQGRILDRK----SMGED----LFWAIRGGGAASFCVILSWKIKLVQ 230
D++ V+ +VD GR RK S +D L+WA GGG +F ++ + +
Sbjct: 174 ADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPG 231
Query: 231 V----PETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFIN--AVNGSKEGEK 284
P + TL + W A L ++ F R+ N A + S
Sbjct: 232 ATGTDPSQLLPKAPTSTLRH-----IVTWDWSA---LTEEAFTRIIDNHGAWHQSNSAAG 283
Query: 285 TVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLL 344
T S ++F + ++ + G+ + +V +V ++ G V
Sbjct: 284 TPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAV----NEGTGVEPAVQR 339
Query: 345 NRIPKSQVSLKRKSD------------YVQEPIPKTGLESIWKLMIE----LGEVGMQWN 388
+ P + +L K D Y+++P ++++ + GEV +
Sbjct: 340 STEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLY-- 397
Query: 389 PYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAM------ 442
YGG ++ +P T T R +I K+ SA W P + N L R Y +
Sbjct: 398 SYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDAN--LAWIREIYREIFATTGG 454
Query: 443 TPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFT 502
P F+NY D+D+ T G + Y+K N+ RL +VK DP + F
Sbjct: 455 VPVPDDRTEGTFINYPDVDLVDERWNT--SGVPWYTLYYKGNYPRLQKVKARWDPRDVFR 512
Query: 503 YEQSI 507
+ S+
Sbjct: 513 HALSV 517
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/476 (23%), Positives = 184/476 (38%), Gaps = 97/476 (20%)
Query: 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSIN 129
+P +I V +V + GL+I +RSGGH+ +G Y +N ++LD+ + SI+
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 130 ISLTDETAWVQAGATASKI------HGFPA--GVCPTLXXXXXXXXXXXXNMMRKFGLSV 181
I A + G + + G A G+ P + + K+GL+
Sbjct: 96 IDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLAS 155
Query: 182 DNIVDAQIVDVQGRIL----DRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPET--- 234
DNI+ A +V G ++ D + +LFWA+RG G +F V+ +++L ++P
Sbjct: 156 DNILGATLVTATGDVIYCSDDERP---ELFWAVRGAG-PNFGVVTEVEVQLYELPRKMLA 211
Query: 235 --VTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVA 292
+T V L T L+ ++ AD + +F+ V+ ++ TV V +
Sbjct: 212 GFITWAPSVSELAGLLTSLLDALNEM-ADHIYPSVFV-----GVDENRAPSVTVCVGHLG 265
Query: 293 MFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVL---------------FWFDQPIG 337
L E+ ++ ++ LG D +R + V+ W D+ I
Sbjct: 266 -GLDIAERDIARLRG----LGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIA 320
Query: 338 TP----LEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGI 393
P E + + K +V EP + KL IE GM P+G
Sbjct: 321 MPNARFAEAIAGNLDK----------FVSEPASGGSV----KLEIE----GM---PFGN- 358
Query: 394 MSEIPATETPFPHRAGNIFKIQYSANWN--QPGIEVTNRYLNLTRTFYEAMTPYVSKNPR 451
TP HR + + A W+ PG E +Y L R A+
Sbjct: 359 -----PKRTPARHR--DAMGVLALAEWSGAAPGSE---KYPELARELDAALLRAGVTTSG 408
Query: 452 EAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSI 507
LN +N+ T E + Y + RL VK DP+N F + +I
Sbjct: 409 FGLLN-------NNSEVTAE---MVAEVYKPEVYSRLAAVKREYDPENRFRHNYNI 454
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/464 (21%), Positives = 183/464 (39%), Gaps = 69/464 (14%)
Query: 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINI 130
P I + + A V C G+QI + GGH Y + ++L++ + +++
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 131 SLTDETAWVQAGA----TASKI-----HGFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSV 181
+ A +Q GA TA ++ G CP + GL++
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTL 161
Query: 182 DNIVDAQIVDVQGRILD-RKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRV 240
D ++ A +V I+ ++ DLFWA+RGGG F ++ ++ + PE +T ++V
Sbjct: 162 DWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQV 220
Query: 241 VKTL--EQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQT 298
T +Q L A Q A + + ++L +RL INA + EG F G
Sbjct: 221 TTTWNRKQHVAGLKAL-QDWAQNTMPRELSMRLEINANALNWEGN----------FFGNA 269
Query: 299 EKLLSLMKQSFPELGIQK--KDCFEMRW---VESVLFWFDQPIGTPLEV----LLNRIPK 349
+ L +++ + G + E W + + L+ D I +V N +
Sbjct: 270 KDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTA 329
Query: 350 SQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPAT---ETPFPH 406
++S + +V + + I QW+ +GG S + A ET + H
Sbjct: 330 PRLSDEAIQAFVDYKFDNSSVRPGRGWWI-------QWDFHGGKNSALAAVSNDETAYAH 382
Query: 407 RA--------GNIFKIQYSAN-WNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNY 457
R +I+ + + + + + G E + F + + ++ + + NY
Sbjct: 383 RDQLWLWQFYDSIYDYENNTSPYPESGFE-------FMQGFVATIEDTLPEDRKGKYFNY 435
Query: 458 RDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFF 501
D T T EE + Y++ N ++L +K DP++ F
Sbjct: 436 AD------TTLTKEEAQKL---YWRGNLEKLQAIKAKYDPEDVF 470
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 120/508 (23%), Positives = 187/508 (36%), Gaps = 84/508 (16%)
Query: 60 NLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVI 119
NLRF LV AA+ E + V + G ++ +RSGGH Y+ S+V V+
Sbjct: 52 NLRFVGDPEEIHLVGSAAEIEQVLSRAV----RSGKRVAVRSGGHCYEDFVANSDV-RVV 106
Query: 120 LDMFNLRSINISLTDETAWVQAGATASKIHG---------FPAGVCPTLXXXXXXXXXXX 170
+DM L ++ V+AGAT ++ P G CP +
Sbjct: 107 MDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVTLPGGACPDVGAGGHILGGGY 166
Query: 171 XNMMRKFGLSVD--NIVDAQIVDVQGR----ILDRKSM--GEDLFWAIRGGGAASFCVIL 222
+ R G VD + V+ +VD G I R+ DL+WA GGG +F V++
Sbjct: 167 GPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVV 226
Query: 223 SWKIKLVQ--VPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFIN------ 274
+ ++ + VP E V W+ LD+ F RL N
Sbjct: 227 RYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWE-----GLDEAAFARLVRNHGRWFE 281
Query: 275 ----------------AVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQ-KK 317
A+ S+ G + A ++L + + +G+Q
Sbjct: 282 QNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHS 341
Query: 318 DCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKS-DYVQEPIPKTGLESIWKL 376
D + W+ S + G + + K + + R+S D Q I L
Sbjct: 342 DTRRLPWLHSTRW-----PGIAGDGDMTGRAKIKAAYARRSFDDRQ----------IGTL 386
Query: 377 MIELGEVGMQWNPYG--------GIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIE-V 427
L NP G G ++ +PA T R +I KI Y W P + V
Sbjct: 387 YTRLTSTDYD-NPAGVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV 444
Query: 428 TNRYL-NLTRTFYE--AMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNN 484
R++ L R Y P A++NY D+D+ T G + Y+K+
Sbjct: 445 HVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNT--SGVPWSELYYKDA 502
Query: 485 FDRLVRVKTSVDPDNFFTYEQSIPISPS 512
+ RL VK DP N F + S+ + P+
Sbjct: 503 YPRLQAVKARWDPRNVFRHALSVRVPPA 530
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 112/471 (23%), Positives = 187/471 (39%), Gaps = 83/471 (17%)
Query: 92 KFGLQIRIRSGGHDYDGLSYVSNVPF-VILDMFNLRSINISLTDETAWVQAGATASKIH- 149
+ G ++ +RSGGH ++ +V N VI+DM L I + ++ G T S+++
Sbjct: 79 RTGKRVAVRSGGHCFE--DFVDNPDVKVIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYE 136
Query: 150 --------GFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNI--VDAQIVDVQGR---- 195
P GVC + + R+FG VD + V+ +V+ QG+
Sbjct: 137 KLYLGWNVTIPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVI 196
Query: 196 --ILDRKSMGEDLFWAIRGGGAASFCVILSWKIK-----------LVQVPETVTVFRVVK 242
+R DL+WA GGG +F V+ + ++ L+ P + V
Sbjct: 197 VATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVT 256
Query: 243 TLEQGATDLV--------AKW--QQVAADKLDQDLFIRLFI-NAVNGSKEGEKTVKVSFV 291
G T+ +W + D L+ +L I N V G E + +
Sbjct: 257 FDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNEVPGMGESGFMMPIQVD 316
Query: 292 AMFLGQTEKLLSLMKQSFPELGIQKKDC---FEMRWVESVLFWFDQPIGTPLEVLLNRIP 348
A +LL ++ + G+ + E RW+ S TP R P
Sbjct: 317 AT-RPDARRLLDAHIEAVID-GVPPAEVPEPIEQRWLAS----------TPGRG--GRGP 362
Query: 349 KSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEV--GMQW-NPYGGIMSEIPATETPFP 405
S K K+ Y+++ + ++++++ M + + G W YGG ++ + T P
Sbjct: 363 AS----KTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALP 418
Query: 406 HRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAM------TPYVSKNPREAFLNYRD 459
R I K+ Y W PG E ++L R Y + P + A++NY D
Sbjct: 419 QRDA-ILKVNYITGWANPGNEA--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPD 475
Query: 460 IDI---GSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSI 507
D+ G NT+G + Y+K N RL +VK + DP N F + SI
Sbjct: 476 SDLADPGLNTSGV-----PWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSI 521
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/467 (20%), Positives = 183/467 (39%), Gaps = 75/467 (16%)
Query: 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINI 130
P I + + A V C G+QI + GGH Y + ++L++ + +++
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 131 SLTDETAWVQAGA----TASKI-----HGFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSV 181
+ A +Q GA TA ++ G P + GL++
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGNRALSHGTAPAVGVGGHVLGGGYGFATHTHGLTL 161
Query: 182 DNIVDAQIVDVQGRILD-RKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRV 240
D ++ A +V I+ ++ DLFWA+RGGG F ++ ++ + PE +T ++V
Sbjct: 162 DWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQV 220
Query: 241 VKTL--EQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQT 298
T +Q L A Q A + + ++L +RL INA + EG F G
Sbjct: 221 TTTWNRKQHVAGLKAL-QDWAQNTMPRELSMRLEINANALNWEGN----------FFGNA 269
Query: 299 EKLLSLMKQSFPELGIQK--KDCFEMRW---VESVLFWFDQPIGTPLEV----LLNRIPK 349
+ L +++ + G + E W + + L+ D I +V N +
Sbjct: 270 KDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTA 329
Query: 350 SQVSLKRKSDYVQEPIPKTGL---ESIWKLMIELGEVGMQWNPYGGIMSEIPAT---ETP 403
++S + +V + + W +QW+ +GG S + A ET
Sbjct: 330 PRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAVSNDETA 379
Query: 404 FPHRA--------GNIFKIQYSAN-WNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAF 454
+ HR +I+ + + + + + G E + F + + ++ + +
Sbjct: 380 YAHRDQLWLWQFYDSIYDYENNTSPYPESGFE-------FMQGFVATIEDTLPEDRKGKY 432
Query: 455 LNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFF 501
NY D T T EE + Y++ N ++L +K DP++ F
Sbjct: 433 FNYAD------TTLTKEEAQKL---YWRGNLEKLQAIKAKYDPEDVF 470
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 101/472 (21%), Positives = 172/472 (36%), Gaps = 88/472 (18%)
Query: 94 GLQIRIRSGGH---DYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIH- 149
G + RSGGH D+ G ++LD+ NL +I + V +GAT ++
Sbjct: 58 GRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLHAIGPAADGAGVRVGSGATVDQVQK 113
Query: 150 --------GFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNI--VDAQIVD-------V 192
P G C + + R+ GL VD++ V+ +VD V
Sbjct: 114 ALFRRWNAALPLGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLV 173
Query: 193 QGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKL--------VQVPETVTVFRVVKTL 244
R D +GE LFWA GGG +F V+ +++ + V +P V K +
Sbjct: 174 TARADDTGDLGE-LFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVV 232
Query: 245 EQGA----TDLVA------KWQQVAAD--KLDQDLFIRLFINAVNGS-------KEGEKT 285
A T V +W + ++ + LF F+N V+ ++ +
Sbjct: 233 FPWAMIDETSFVTVMRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVD 292
Query: 286 VKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLN 345
+ +A F+ + ++ P G+ M W+ + G +V+
Sbjct: 293 PEGEILARFVASLTEGTGVV--GIPRGGV-------MSWLTGTRYMSQADCG---DVMGA 340
Query: 346 RIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVG----MQWNPYGGIMSEIPATE 401
R KS Y P S+ + G + +N YGG ++ ++
Sbjct: 341 RSAS-------KSAY-HRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSD 392
Query: 402 TPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAM------TPYVSKNPREAFL 455
P R ++ K + + W E+ +L R YE P ++
Sbjct: 393 AAVPQR-DSVVKSSWFSAWQD--AELDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYI 449
Query: 456 NYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSI 507
NY D D+ G+ + Y+K+N+ RL K + DP N F + SI
Sbjct: 450 NYPDADLLDPARN--RSGEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 251 LVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFP 310
++ + + + K ++ ++L A + G K VA++L EKLL+++K+
Sbjct: 141 VLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGK------VALYLPDKEKLLNVIKERGI 194
Query: 311 ELGIQKKDC-FEM--RWVESVLFW 331
+LG KD F++ RW S++F+
Sbjct: 195 KLGYSVKDIKFKVGTRWRHSLIFF 218
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 274 NAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVES 327
AV K E+TVK++ ++ + LSL+ ++ GI+ + E++WV++
Sbjct: 289 EAVRVLKHPERTVKIAIAGKYVKMPDAYLSLL-EALRHAGIKNRARVEVKWVDA 341
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 274 NAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVES 327
AV K E+TVK++ ++ + LSL+ ++ GI+ + E++WV++
Sbjct: 289 EAVRVLKHPERTVKIAIAGKYVKMPDAYLSLL-EALRHAGIKNRARVEVKWVDA 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,022,156
Number of Sequences: 62578
Number of extensions: 575785
Number of successful extensions: 1354
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 28
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)