Query 040700
Match_columns 512
No_of_seqs 316 out of 2166
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:54:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.6E-37 5.6E-42 327.5 38.8 195 39-243 40-253 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 1.2E-31 2.5E-36 282.3 32.5 187 63-259 7-204 (438)
3 TIGR01676 GLDHase galactonolac 100.0 4.3E-30 9.4E-35 272.2 21.5 188 62-259 53-251 (541)
4 PLN02805 D-lactate dehydrogena 100.0 5.9E-30 1.3E-34 275.3 21.3 182 69-252 132-328 (555)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.4E-28 2.9E-33 262.9 26.7 173 67-242 28-217 (459)
6 TIGR01677 pln_FAD_oxido plant- 100.0 4.4E-29 9.5E-34 268.0 21.2 171 63-234 24-214 (557)
7 TIGR01679 bact_FAD_ox FAD-link 100.0 8.3E-29 1.8E-33 260.3 19.7 184 63-259 4-198 (419)
8 PRK11230 glycolate oxidase sub 100.0 1.7E-28 3.8E-33 262.5 21.4 175 67-243 52-242 (499)
9 PLN02465 L-galactono-1,4-lacto 99.9 2.1E-26 4.5E-31 246.1 21.3 188 62-259 88-286 (573)
10 PRK11282 glcE glycolate oxidas 99.9 1.1E-26 2.4E-31 236.6 17.7 157 79-240 3-178 (352)
11 TIGR00387 glcD glycolate oxida 99.9 1E-26 2.2E-31 244.7 17.4 168 74-243 1-185 (413)
12 KOG1231 Proteins containing th 99.9 7.5E-26 1.6E-30 227.0 18.9 165 66-233 59-240 (505)
13 PF01565 FAD_binding_4: FAD bi 99.9 5.8E-24 1.3E-28 190.3 12.2 126 71-198 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 1.4E-22 2.9E-27 204.0 10.6 155 68-232 28-193 (298)
15 PRK11183 D-lactate dehydrogena 99.8 2.3E-19 4.9E-24 188.0 16.7 182 68-253 36-287 (564)
16 PRK14652 UDP-N-acetylenolpyruv 99.8 2.1E-19 4.6E-24 180.3 11.8 154 68-232 33-196 (302)
17 TIGR00179 murB UDP-N-acetyleno 99.8 2.8E-19 6E-24 178.4 10.9 154 68-230 10-174 (284)
18 PRK12436 UDP-N-acetylenolpyruv 99.8 3.1E-19 6.8E-24 179.5 11.0 154 68-231 34-197 (305)
19 PRK13906 murB UDP-N-acetylenol 99.8 4.3E-19 9.3E-24 178.5 11.1 153 69-231 35-197 (307)
20 PRK13903 murB UDP-N-acetylenol 99.8 1E-18 2.3E-23 178.4 13.7 154 68-232 30-197 (363)
21 KOG4730 D-arabinono-1, 4-lacto 99.8 2.2E-18 4.8E-23 173.5 14.5 168 68-239 47-225 (518)
22 KOG1233 Alkyl-dihydroxyacetone 99.7 2.6E-16 5.7E-21 155.1 13.3 191 63-259 153-364 (613)
23 PRK14649 UDP-N-acetylenolpyruv 99.7 1.7E-16 3.6E-21 159.0 11.4 156 69-232 19-193 (295)
24 KOG1232 Proteins containing th 99.7 2.4E-16 5.3E-21 155.2 9.3 177 59-237 78-271 (511)
25 PF08031 BBE: Berberine and be 99.7 3.5E-17 7.6E-22 117.4 2.3 47 453-508 1-47 (47)
26 PRK14653 UDP-N-acetylenolpyruv 99.6 6E-15 1.3E-19 147.4 11.1 151 70-232 33-194 (297)
27 PRK14650 UDP-N-acetylenolpyruv 99.5 1.2E-13 2.6E-18 137.7 10.6 153 70-232 32-195 (302)
28 COG0812 MurB UDP-N-acetylmuram 99.5 3E-13 6.5E-18 132.7 12.4 156 68-231 18-183 (291)
29 PRK00046 murB UDP-N-acetylenol 99.5 1.2E-13 2.7E-18 139.6 9.6 152 70-231 20-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.4 8.7E-13 1.9E-17 133.3 11.1 155 70-232 29-237 (354)
31 KOG1262 FAD-binding protein DI 99.3 1.4E-12 3E-17 129.4 5.3 157 79-236 62-233 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.2 8E-11 1.7E-15 115.9 9.5 140 71-231 21-170 (273)
33 PRK13904 murB UDP-N-acetylenol 98.7 3.6E-08 7.7E-13 96.3 7.5 134 70-232 18-160 (257)
34 PF09265 Cytokin-bind: Cytokin 92.4 0.044 9.5E-07 54.4 0.4 33 474-507 248-280 (281)
35 PLN00107 FAD-dependent oxidore 90.9 0.76 1.6E-05 44.9 7.1 27 476-504 171-197 (257)
36 PF00941 FAD_binding_5: FAD bi 88.4 0.44 9.5E-06 44.0 3.4 67 72-144 3-73 (171)
37 PRK09799 putative oxidoreducta 87.3 1.4 3E-05 43.6 6.3 66 73-144 4-71 (258)
38 PF02913 FAD-oxidase_C: FAD li 86.5 0.95 2E-05 43.5 4.6 63 426-502 181-244 (248)
39 PF04030 ALO: D-arabinono-1,4- 84.2 1.1 2.3E-05 44.2 3.8 28 475-504 227-254 (259)
40 TIGR03312 Se_sel_red_FAD proba 83.2 3 6.4E-05 41.2 6.4 65 74-144 4-70 (257)
41 TIGR01677 pln_FAD_oxido plant- 77.8 4.3 9.4E-05 44.7 6.1 27 476-504 477-503 (557)
42 TIGR00387 glcD glycolate oxida 75.7 3 6.5E-05 44.2 4.1 28 475-502 382-410 (413)
43 PRK09971 xanthine dehydrogenas 73.3 4.8 0.0001 40.5 4.6 67 73-144 6-76 (291)
44 TIGR03195 4hydrxCoA_B 4-hydrox 70.8 5.9 0.00013 40.5 4.6 66 73-144 6-75 (321)
45 TIGR02963 xanthine_xdhA xanthi 70.7 7.2 0.00016 42.0 5.5 70 71-144 192-263 (467)
46 TIGR03199 pucC xanthine dehydr 69.0 6.5 0.00014 38.9 4.4 64 77-144 1-67 (264)
47 PLN02805 D-lactate dehydrogena 66.8 9.7 0.00021 42.0 5.6 34 475-508 516-550 (555)
48 PRK11230 glycolate oxidase sub 65.3 8.7 0.00019 41.8 4.8 33 475-507 439-472 (499)
49 TIGR01679 bact_FAD_ox FAD-link 63.3 3.6 7.8E-05 43.7 1.4 28 476-505 386-413 (419)
50 COG4981 Enoyl reductase domain 62.2 14 0.00031 39.8 5.4 94 36-144 122-223 (717)
51 KOG4730 D-arabinono-1, 4-lacto 44.4 11 0.00024 39.7 1.3 20 483-502 485-504 (518)
52 PRK11282 glcE glycolate oxidas 42.5 15 0.00033 38.0 1.9 20 483-502 324-344 (352)
53 PLN02906 xanthine dehydrogenas 39.1 32 0.00069 42.1 4.2 69 72-144 229-299 (1319)
54 PF02601 Exonuc_VII_L: Exonucl 39.0 22 0.00047 36.2 2.4 57 40-103 18-86 (319)
55 PLN00192 aldehyde oxidase 36.8 56 0.0012 40.2 5.8 73 71-144 233-306 (1344)
56 TIGR02969 mam_aldehyde_ox alde 36.5 55 0.0012 40.2 5.6 69 72-144 237-307 (1330)
57 PRK00286 xseA exodeoxyribonucl 35.2 48 0.001 35.3 4.5 57 40-103 139-203 (438)
58 COG4630 XdhA Xanthine dehydrog 35.0 51 0.0011 34.2 4.2 68 73-144 205-274 (493)
59 COG1319 CoxM Aerobic-type carb 34.6 97 0.0021 31.1 6.1 70 71-144 3-75 (284)
60 TIGR00237 xseA exodeoxyribonuc 28.3 42 0.00091 35.8 2.5 57 40-103 133-198 (432)
61 TIGR01676 GLDHase galactonolac 26.1 38 0.00082 37.2 1.7 26 476-504 509-534 (541)
62 PLN02465 L-galactono-1,4-lacto 25.6 39 0.00084 37.4 1.7 27 475-504 538-564 (573)
63 COG1058 CinA Predicted nucleot 25.1 1.1E+02 0.0023 30.2 4.5 61 35-105 11-71 (255)
64 cd07033 TPP_PYR_DXS_TK_like Py 23.5 1.1E+02 0.0025 27.3 4.2 29 73-101 126-154 (156)
65 COG4359 Uncharacterized conser 23.3 85 0.0018 29.4 3.2 27 83-109 78-104 (220)
66 COG1570 XseA Exonuclease VII, 21.6 62 0.0013 34.4 2.2 57 40-103 139-204 (440)
67 PF02779 Transket_pyr: Transke 21.2 1.4E+02 0.0031 27.3 4.4 32 72-103 139-172 (178)
68 PF01113 DapB_N: Dihydrodipico 20.8 1.4E+02 0.0029 25.7 3.9 35 71-105 68-102 (124)
69 KOG2499 Beta-N-acetylhexosamin 20.5 86 0.0019 33.7 2.9 29 77-105 246-276 (542)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.6e-37 Score=327.46 Aligned_cols=195 Identities=22% Similarity=0.286 Sum_probs=166.2
Q ss_pred cceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCHHHHHHHHHHHH--hcCCeEEEeecccCCCCCCcccCCC
Q 040700 39 SEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSK--KFGLQIRIRSGGHDYDGLSYVSNVP 116 (512)
Q Consensus 39 ~~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~v~ggGh~~~g~s~~~~~~ 116 (512)
.+.+.+ ++..|+.+. ..|+......|.+|++|+|++||+++|++|+ ++++++++||+|||+.|.+...+
T Consensus 40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~-- 110 (525)
T PLN02441 40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG-- 110 (525)
T ss_pred CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence 455543 455666553 2477777789999999999999999999997 67999999999999998887654
Q ss_pred eEEEEecCCcc-------EEEeCCCCeEEEecCcc--------cccccccC-ccCCCCccccccccCCCCCCccccccch
Q 040700 117 FVILDMFNLRS-------INISLTDETAWVQAGAT--------ASKIHGFP-AGVCPTLGVGGHFSGGGYGNMMRKFGLS 180 (512)
Q Consensus 117 g~vIdl~~l~~-------i~~d~~~~~v~v~~G~~--------~~~g~~~~-~G~~~~vgvgG~~~gGg~g~~s~~~G~~ 180 (512)
|++|||++||+ +++|.+..+|+|++|++ .++|++.+ .+.+..+++||.+.+||+|..+.+||..
T Consensus 111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~ 190 (525)
T PLN02441 111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQ 190 (525)
T ss_pred eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcH
Confidence 89999999999 36788889999999998 55687644 3555678899999999999999999999
Q ss_pred hhheeeEEEEecCCeEEe-ccCCCchhHHHHhhcCCCceEEEEEEEEEEEecCceEEEEEEEec
Q 040700 181 VDNIVDAQIVDVQGRILD-RKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKT 243 (512)
Q Consensus 181 ~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~ 243 (512)
+|+|+++|||++||++++ ++++|+|||||+|||+ |+|||||+++||++|+|+.+.+..+.+.
T Consensus 191 ~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~ 253 (525)
T PLN02441 191 ISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS 253 (525)
T ss_pred HHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence 999999999999999996 7788999999999998 8999999999999999987665555554
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.2e-31 Score=282.26 Aligned_cols=187 Identities=17% Similarity=0.272 Sum_probs=164.0
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEec
Q 040700 63 FATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQA 141 (512)
Q Consensus 63 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~ 141 (512)
|+.+....|.+|+.|+|++||+++|++|++++++++++|+|||+.+.... + +++|||++|++| ++|.++++|+|++
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 88877889999999999999999999999999999999999999876553 3 799999999996 9999999999999
Q ss_pred Ccc--------cccccccC-ccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-ccCCCchhHHHHh
Q 040700 142 GAT--------ASKIHGFP-AGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RKSMGEDLFWAIR 211 (512)
Q Consensus 142 G~~--------~~~g~~~~-~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~r 211 (512)
|++ .++|+.++ .|.++.++|||++++|+||. +..||..+|+|++++||++||++++ ++.+++|||||.+
T Consensus 84 G~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~~ 162 (438)
T TIGR01678 84 GIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQAAR 162 (438)
T ss_pred CCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHHHh
Confidence 998 67899887 68899999999999999996 7889999999999999999999996 6677899999999
Q ss_pred hcCCCceEEEEEEEEEEEecCceEEEEEEEecccchHHHHHHHHHHHH
Q 040700 212 GGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVA 259 (512)
Q Consensus 212 G~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
|+. |+|||||++|||++|........ . .....++++.|++..
T Consensus 163 ~~~-G~lGIIt~vtl~l~p~~~l~~~~----~-~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 163 VSL-GCLGIIVTVTIQVVPQFHLQETS----F-VSTLKELLDNWDSHW 204 (438)
T ss_pred cCC-CceEeeEEEEEEEEeccceEEEE----e-cCCHHHHHHHHHHHh
Confidence 998 89999999999999987543221 1 123567777787765
No 3
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.97 E-value=4.3e-30 Score=272.19 Aligned_cols=188 Identities=13% Similarity=0.187 Sum_probs=163.9
Q ss_pred ccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEe
Q 040700 62 RFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQ 140 (512)
Q Consensus 62 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~ 140 (512)
+|+++....|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 3999888999999999999999999999999999999999999999877654 347999999996 999999999999
Q ss_pred cCcc--------cccccccCc-cCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-ccCCCchhHHHH
Q 040700 141 AGAT--------ASKIHGFPA-GVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RKSMGEDLFWAI 210 (512)
Q Consensus 141 ~G~~--------~~~g~~~~~-G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~ 210 (512)
||++ .++|++++. |.+..++|||.+++|+||.. ..||..+|+|++++||++||+++. ++.+|+|||||.
T Consensus 130 AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~Aa 208 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFLA 208 (541)
T ss_pred CCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHHH
Confidence 9998 678998874 88889999999999999985 579999999999999999999995 677899999999
Q ss_pred hhcCCCceEEEEEEEEEEEecCceEEEEEEEecccchHHHHHHHHHHHH
Q 040700 211 RGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVA 259 (512)
Q Consensus 211 rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
|||+ |+|||||++|||+.|...... .... ....++++.|.++.
T Consensus 209 rgsl-G~LGVItevTLr~~Pa~~l~~-~~~~----~~~~e~l~~~~~~~ 251 (541)
T TIGR01676 209 RCGL-GGLGVVAEVTLQCVERQELVE-HTFI----SNMKDIKKNHKKFL 251 (541)
T ss_pred hcCC-CceEeEEEEEEEEEeccceeE-EEEe----cCHHHHHHHHHHHH
Confidence 9998 899999999999999987432 1111 23456677777765
No 4
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.97 E-value=5.9e-30 Score=275.29 Aligned_cols=182 Identities=21% Similarity=0.312 Sum_probs=158.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc---
Q 040700 69 LKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT--- 144 (512)
Q Consensus 69 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~--- 144 (512)
..|.+||+|+|++||+++|++|+++++|+++||||||+.|.+...+ ++++|||++||+| ++|.++.+++||||++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4699999999999999999999999999999999999998776543 4899999999997 6999999999999998
Q ss_pred -----cccccccCccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe--cc----CCCchhHHHHhhc
Q 040700 145 -----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD--RK----SMGEDLFWAIRGG 213 (512)
Q Consensus 145 -----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~--~~----~~~~dLfwa~rG~ 213 (512)
.++|+.++...++.++|||.++++++|..+.+||.++|+|+++|||++||++++ .. ..++||||+++|+
T Consensus 211 L~~~L~~~Gl~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~Gs 290 (555)
T PLN02805 211 LNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGS 290 (555)
T ss_pred HHHHHHHcCCEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccC
Confidence 678999988878888999999999999999999999999999999999999995 21 2358999999999
Q ss_pred CCCceEEEEEEEEEEEecCceEEEEEEEecccchHHHHH
Q 040700 214 GAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLV 252 (512)
Q Consensus 214 g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~ 252 (512)
. |+|||||+++||++|.|+......+.|+..+++.+++
T Consensus 291 e-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av 328 (555)
T PLN02805 291 E-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVA 328 (555)
T ss_pred C-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHH
Confidence 8 8999999999999999986655555555333333433
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.97 E-value=1.4e-28 Score=262.94 Aligned_cols=173 Identities=29% Similarity=0.347 Sum_probs=150.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc-
Q 040700 67 TTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT- 144 (512)
Q Consensus 67 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~- 144 (512)
....|.+|+.|+|++||+++|++|+++++|+++||+||++.|.+... . +++|||++||+| ++|+++++++|+||++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34578899999999999999999999999999999999999887665 2 899999999998 7999999999999998
Q ss_pred -------cccccccCcc-CCC-CccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-c-----cCCCchhHHH
Q 040700 145 -------ASKIHGFPAG-VCP-TLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-R-----KSMGEDLFWA 209 (512)
Q Consensus 145 -------~~~g~~~~~G-~~~-~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~-----~~~~~dLfwa 209 (512)
.++|+.++.. .+. +++|||+++++++|..+.+||.+.|+|++++||++||++++ . .....||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 6689998753 333 78999999999999999999999999999999999999995 1 1234699999
Q ss_pred HhhcCCCceEEEEEEEEEEEecCceEEEEEEEe
Q 040700 210 IRGGGAASFCVILSWKIKLVQVPETVTVFRVVK 242 (512)
Q Consensus 210 ~rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~ 242 (512)
..|+. |+|||||++++|++|.|+........+
T Consensus 186 ~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~ 217 (459)
T COG0277 186 FVGSE-GTLGIITEATLKLLPLPETKATAVAGF 217 (459)
T ss_pred cccCC-ccceEEEEEEEEeccCCchheEEEEeC
Confidence 99988 899999999999999887544333333
No 6
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.96 E-value=4.4e-29 Score=268.01 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=150.8
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEee-cccCCCCCCcccC-CCeEEEEecCCcc-EEEeCCCCeEEE
Q 040700 63 FATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRS-GGHDYDGLSYVSN-VPFVILDMFNLRS-INISLTDETAWV 139 (512)
Q Consensus 63 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~g-gGh~~~g~s~~~~-~~g~vIdl~~l~~-i~~d~~~~~v~v 139 (512)
|+.+....|.+|++|+|++||+++|++|++++++++++| +||++.+.+...+ +++++|||++||+ +++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 999889999999999999999999999999999999996 5999876544321 1369999999999 699999999999
Q ss_pred ecCcc--------cccccccCcc-CCCCccccccccCCCCCCcc-ccccchhhheeeEEEEecCC------eEEe-ccCC
Q 040700 140 QAGAT--------ASKIHGFPAG-VCPTLGVGGHFSGGGYGNMM-RKFGLSVDNIVDAQIVDVQG------RILD-RKSM 202 (512)
Q Consensus 140 ~~G~~--------~~~g~~~~~G-~~~~vgvgG~~~gGg~g~~s-~~~G~~~D~v~~~~vV~a~G------~~v~-~~~~ 202 (512)
++|++ .++|+.++.+ .+..++|||.+.+|+||... +.+|..+|+|++++||++|| ++++ +..+
T Consensus 104 ~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~ 183 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGD 183 (557)
T ss_pred CCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCC
Confidence 99998 6789988764 55677899999999999755 68999999999999999998 7775 6678
Q ss_pred CchhHHHHhhcCCCceEEEEEEEEEEEecCce
Q 040700 203 GEDLFWAIRGGGAASFCVILSWKIKLVQVPET 234 (512)
Q Consensus 203 ~~dLfwa~rG~g~g~fGvvt~~~~~l~p~~~~ 234 (512)
|+|||||+|||+ |+|||||++|||++|.+..
T Consensus 184 ~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 184 TPNEFNAAKVSL-GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CHHHHHhhccCC-CccEeeeEEEEEEEccccc
Confidence 899999999998 8999999999999998763
No 7
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.96 E-value=8.3e-29 Score=260.31 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=156.0
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEec
Q 040700 63 FATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQA 141 (512)
Q Consensus 63 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~ 141 (512)
|+......|.+|+.|+|++||+++|++|++ +++++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|+|
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888778899999999999999999999974 79999999999876543 3 799999999996 8999999999999
Q ss_pred Ccc--------cccccccC-ccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-ccCCCchhHHHHh
Q 040700 142 GAT--------ASKIHGFP-AGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RKSMGEDLFWAIR 211 (512)
Q Consensus 142 G~~--------~~~g~~~~-~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~r 211 (512)
|++ .++|+.++ .|.+..++|||.+.+|+||. +..||..+|+|++++||++||++++ ++.+|+|||||+|
T Consensus 78 G~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~~ 156 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAAR 156 (419)
T ss_pred CCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHHH
Confidence 998 67888876 36666788999999999997 4689999999999999999999996 6778999999999
Q ss_pred hcCCCceEEEEEEEEEEEecCceEEEEEEEecccchHHHHHHHHHHHH
Q 040700 212 GGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVA 259 (512)
Q Consensus 212 G~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
||+ |+|||||++|||++|........ +. ....++++.+.++.
T Consensus 157 g~~-G~lGVIt~vtl~~~p~~~~~~~~---~~--~~~~~~~~~~~~~~ 198 (419)
T TIGR01679 157 VSL-GALGVISQVTLQTVALFRLRRRD---WR--RPLAQTLERLDEFV 198 (419)
T ss_pred hCC-CceEEEEEEEEEeecceEeEEEE---Ee--cCHHHHHHHHHHHH
Confidence 998 89999999999999987643221 11 12345666666665
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.96 E-value=1.7e-28 Score=262.46 Aligned_cols=175 Identities=23% Similarity=0.324 Sum_probs=151.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc-
Q 040700 67 TTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT- 144 (512)
Q Consensus 67 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~- 144 (512)
....|.+||+|+|++||+++|++|+++++|+++||+||++.|.+.... ++++|||++||+| ++|+++++++||||++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 356899999999999999999999999999999999999987665433 3899999999997 8999999999999998
Q ss_pred -------cccccccCc--cCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEecc-----CCCchhHHHH
Q 040700 145 -------ASKIHGFPA--GVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRK-----SMGEDLFWAI 210 (512)
Q Consensus 145 -------~~~g~~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~~~-----~~~~dLfwa~ 210 (512)
.++|+.++. +.....+|||.+++++.|+.+.+||.+.|+|+++|||++||++++.. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 678887653 33445679999999999999999999999999999999999999621 2478999999
Q ss_pred hhcCCCceEEEEEEEEEEEecCceEEEEEEEec
Q 040700 211 RGGGAASFCVILSWKIKLVQVPETVTVFRVVKT 243 (512)
Q Consensus 211 rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~ 243 (512)
+|++ |+|||||+++||++|.|+....+.+.|.
T Consensus 211 ~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~ 242 (499)
T PRK11230 211 TGSE-GMLGVVTEVTVKLLPKPPVARVLLASFD 242 (499)
T ss_pred ccCC-CccEEEEEEEEEEEcCCcceEEEEEECC
Confidence 9998 8999999999999999986555555554
No 9
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.95 E-value=2.1e-26 Score=246.13 Aligned_cols=188 Identities=14% Similarity=0.196 Sum_probs=160.0
Q ss_pred ccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEe
Q 040700 62 RFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQ 140 (512)
Q Consensus 62 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~ 140 (512)
+|+++....|.+++.|+|++||+++|++|++++++|+++|+|||+.+.....+ + +|||++|++| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~--g-lIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE--G-MVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC--E-EEECcCCCCcEEEeCCCCEEEEc
Confidence 49999999999999999999999999999999999999999999988766543 4 6899999996 999999999999
Q ss_pred cCcc--------cccccccCc-cCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-ccCCCchhHHHH
Q 040700 141 AGAT--------ASKIHGFPA-GVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RKSMGEDLFWAI 210 (512)
Q Consensus 141 ~G~~--------~~~g~~~~~-G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~ 210 (512)
+|++ .++|++++. |.+...+|||.+.+|+||... .+|..+|+|++++||+++|++++ +..+++||||+.
T Consensus 165 AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~aa 243 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRLA 243 (573)
T ss_pred cCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhHh
Confidence 9998 778998774 666678899999999999754 68999999999999999999885 667789999999
Q ss_pred hhcCCCceEEEEEEEEEEEecCceEEEEEEEecccchHHHHHHHHHHHH
Q 040700 211 RGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVA 259 (512)
Q Consensus 211 rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
|++. |.|||||++|||+.|..+... -.... ...++++.+.++.
T Consensus 244 r~gl-G~lGVIteVTLql~P~~~L~~-~~~~~----~~~~~~~~~~~~~ 286 (573)
T PLN02465 244 RCGL-GGLGVVAEVTLQCVPAHRLVE-HTFVS----NRKEIKKNHKKWL 286 (573)
T ss_pred hccC-CCCcEEEEEEEEEEecCceEE-EEEEe----cHHHHHHHHHHHH
Confidence 9998 799999999999999987432 12222 2345566666654
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=236.59 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhcCCeEEEeeccc-CCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc--------cccc
Q 040700 79 HESHVQATVICSKKFGLQIRIRSGGH-DYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT--------ASKI 148 (512)
Q Consensus 79 s~~dv~~~v~~a~~~~~~~~v~ggGh-~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~--------~~~g 148 (512)
.++||+++|++|+++++|++++|||| ++.+.+. + +++|||++||+| ++|+++.+|+|++|++ .++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 5666532 2 578999999997 9999999999999998 6778
Q ss_pred cccCc---cCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEec------cCCCchhHHHHhhcCCCceE
Q 040700 149 HGFPA---GVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDR------KSMGEDLFWAIRGGGAASFC 219 (512)
Q Consensus 149 ~~~~~---G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~~------~~~~~dLfwa~rG~g~g~fG 219 (512)
+.++. ..+...+|||++.+|++|+.+.+||..+|+|++++||++||++++. +..++||||+++|+. |+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhh
Confidence 77653 3444578999999999999999999999999999999999999952 224679999999998 8999
Q ss_pred EEEEEEEEEEecCceEEEEEE
Q 040700 220 VILSWKIKLVQVPETVTVFRV 240 (512)
Q Consensus 220 vvt~~~~~l~p~~~~~~~~~~ 240 (512)
|||+++||++|.|+....+.+
T Consensus 158 Vitevtlkl~P~p~~~~t~~~ 178 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRL 178 (352)
T ss_pred hheEEEEEEEecCceEEEEEE
Confidence 999999999999875444333
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.94 E-value=1e-26 Score=244.72 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=145.4
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc--------
Q 040700 74 IVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT-------- 144 (512)
Q Consensus 74 vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~-------- 144 (512)
||+|+|++||+++|++|+++++|++++|+|||+.|.+...+ ++++|||++||+| ++|+++++++||||++
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987665443 4899999999997 9999999999999998
Q ss_pred cccccccCc--cCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-c-----cCCCchhHHHHhhcCCC
Q 040700 145 ASKIHGFPA--GVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-R-----KSMGEDLFWAIRGGGAA 216 (512)
Q Consensus 145 ~~~g~~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~-----~~~~~dLfwa~rG~g~g 216 (512)
.++|+.++. +.....+|||.+.+++.|..+.+||.+.|+|++++||++||++++ . ...++||+|.+.|+. |
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-G 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-c
Confidence 678988763 333456799999999999999999999999999999999999995 2 223579999999998 8
Q ss_pred ceEEEEEEEEEEEecCceEEEEEEEec
Q 040700 217 SFCVILSWKIKLVQVPETVTVFRVVKT 243 (512)
Q Consensus 217 ~fGvvt~~~~~l~p~~~~~~~~~~~~~ 243 (512)
+|||||+++||++|.|+....+.+.|.
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~ 185 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFD 185 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECC
Confidence 999999999999999986555445454
No 12
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.94 E-value=7.5e-26 Score=226.96 Aligned_cols=165 Identities=24% Similarity=0.407 Sum_probs=142.0
Q ss_pred CCCCCccEEEEcCCHHHHHHHHHHHHhc--CCeEEEeecccCCCCCCcccCCCeEEEEec---CCccE-EEeCCCCeEEE
Q 040700 66 PTTLKPLVIVAAKHESHVQATVICSKKF--GLQIRIRSGGHDYDGLSYVSNVPFVILDMF---NLRSI-NISLTDETAWV 139 (512)
Q Consensus 66 ~~~~~p~~vv~p~s~~dv~~~v~~a~~~--~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~---~l~~i-~~d~~~~~v~v 139 (512)
..+..|.+|..|+|++||++++|+|... ++|+++||+|||..|.+.... +|+||.|+ .|+++ .+..++..+.|
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV 137 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDV 137 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEe
Confidence 3456899999999999999999999999 999999999999999887733 48777775 34554 45566789999
Q ss_pred ecCcc--------cccccc--cCccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-ccCCCchhHH
Q 040700 140 QAGAT--------ASKIHG--FPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RKSMGEDLFW 208 (512)
Q Consensus 140 ~~G~~--------~~~g~~--~~~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~~~~~dLfw 208 (512)
.||.. ..+|+. .+.-..+ ..|||.++.+|+|..+.+||...+||++++|||++|++++ ++..|++||.
T Consensus 138 ~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~ 216 (505)
T KOG1231|consen 138 SAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFF 216 (505)
T ss_pred eCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeee
Confidence 99987 567884 3332223 7789999999999999999999999999999999999995 7778999999
Q ss_pred HHhhcCCCceEEEEEEEEEEEecCc
Q 040700 209 AIRGGGAASFCVILSWKIKLVQVPE 233 (512)
Q Consensus 209 a~rG~g~g~fGvvt~~~~~l~p~~~ 233 (512)
++-||- |+|||||+++++|+|+|.
T Consensus 217 ~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeccC-cceeeEEEEEEEeccCCc
Confidence 999999 899999999999999993
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.91 E-value=5.8e-24 Score=190.35 Aligned_cols=126 Identities=32% Similarity=0.506 Sum_probs=115.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCcc-EEEeCCCCeEEEecCcc-----
Q 040700 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRS-INISLTDETAWVQAGAT----- 144 (512)
Q Consensus 71 p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~-i~~d~~~~~v~v~~G~~----- 144 (512)
|.+|++|+|++||+++|++|+++++++.++|+||++.+.+... ++++|||++|++ +++|++.++++|++|++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999999777634 389999999999 69999999999999998
Q ss_pred ---cccccccC--ccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe
Q 040700 145 ---ASKIHGFP--AGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD 198 (512)
Q Consensus 145 ---~~~g~~~~--~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~ 198 (512)
.++|+.++ .+.+..+++||++.+|++|..++.||..+|+|+++|+|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 46677765 6788889999999999999999999999999999999999999985
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=1.4e-22 Score=203.99 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=131.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecC-CccEEEeCCCCeEEEecCcc--
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFN-LRSINISLTDETAWVQAGAT-- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~-l~~i~~d~~~~~v~v~~G~~-- 144 (512)
...|.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|||++ |+.+++ ++.+++|++|+.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHH
Confidence 34788999999999999999999999999999999999875444333 89999998 998855 456899999998
Q ss_pred ------cccccccCccCCCCccccccccCCCCCCcccccc-chhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCC-
Q 040700 145 ------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFG-LSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAA- 216 (512)
Q Consensus 145 ------~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G-~~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g- 216 (512)
.++|+ .|.+..+|+.| +.||+++++.+.|| .++|+|+++++|++||++++.. +.|++|++|+++++
T Consensus 104 ~L~~~l~~~Gl---~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~~~ 177 (298)
T PRK13905 104 KLARFAAEAGL---SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSALQE 177 (298)
T ss_pred HHHHHHHHcCC---CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccCCC
Confidence 55666 46777788877 67888988899998 7999999999999999999743 35999999998744
Q ss_pred ceEEEEEEEEEEEecC
Q 040700 217 SFCVILSWKIKLVQVP 232 (512)
Q Consensus 217 ~fGvvt~~~~~l~p~~ 232 (512)
.+||||+++||++|..
T Consensus 178 ~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 178 EGLIVLSATFQLEPGD 193 (298)
T ss_pred CCEEEEEEEEEEcCCC
Confidence 4899999999999874
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.82 E-value=2.3e-19 Score=188.01 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=145.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCC----CeEEEEecCCccE-EEeCCCCeEEEecC
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNV----PFVILDMFNLRSI-NISLTDETAWVQAG 142 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~----~g~vIdl~~l~~i-~~d~~~~~v~v~~G 142 (512)
...|.+||+|.|++||+++|++|.+++++|++||||++..|.+...+. ++|||||++||+| ++| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988776532 3799999999997 677 5678999999
Q ss_pred cc--------cccccccCc--cCC-CCccccccccCCCCCCccccccchhhheeeEEEEecCCeE-------Ee--c-c-
Q 040700 143 AT--------ASKIHGFPA--GVC-PTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRI-------LD--R-K- 200 (512)
Q Consensus 143 ~~--------~~~g~~~~~--G~~-~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~-------v~--~-~- 200 (512)
++ .++|+..+. |+| -...|||.+..+.-|....+||...++++. ++|++||++ +. . .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 98 567876544 222 233577888888888889999999999999 999999999 32 1 1
Q ss_pred -------CC----------------------------------CchhHHHH--hhcCCCceEEEEEEEEEEEecCceEEE
Q 040700 201 -------SM----------------------------------GEDLFWAI--RGGGAASFCVILSWKIKLVQVPETVTV 237 (512)
Q Consensus 201 -------~~----------------------------------~~dLfwa~--rG~g~g~fGvvt~~~~~l~p~~~~~~~ 237 (512)
.. |.|+...+ .|+. |++||| +++++++|.|+....
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 01 22666666 7887 899999 999999999987777
Q ss_pred EEEEecccchHHHHHH
Q 040700 238 FRVVKTLEQGATDLVA 253 (512)
Q Consensus 238 ~~~~~~~~~~~~~~~~ 253 (512)
|.+.++..+.+.++..
T Consensus 272 f~ig~n~~~~~~~~rr 287 (564)
T PRK11183 272 FYIGTNDPAVLTEIRR 287 (564)
T ss_pred EEEeCCCHHHHHHHHH
Confidence 7777765444444443
No 16
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=2.1e-19 Score=180.33 Aligned_cols=154 Identities=17% Similarity=0.129 Sum_probs=127.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecC-CccEEEeCCCCeEEEecCcc--
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFN-LRSINISLTDETAWVQAGAT-- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~-l~~i~~d~~~~~v~v~~G~~-- 144 (512)
...|.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|+|++ ++.+..+ +.+++|+||+.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 45788999999999999999999999999999999999875443333 79999976 5556543 46899999998
Q ss_pred ------cccccccCccCCCCccccccccCCCCCCccc-cccchhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCc
Q 040700 145 ------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMR-KFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAAS 217 (512)
Q Consensus 145 ------~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~-~~G~~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~ 217 (512)
.++|+ .|.+..+|++| +.||++.++++ .+|.++|+|+++++|++|| .++.. ..|+.|+||++.-+.
T Consensus 109 ~L~~~~~~~GL---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~~~~ 181 (302)
T PRK14652 109 RLPARAHAHGL---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCRLPP 181 (302)
T ss_pred HHHHHHHHcCC---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceeccCC
Confidence 56777 48899999988 88999999986 6678999999999999999 44322 359999999975333
Q ss_pred eEEEEEEEEEEEecC
Q 040700 218 FCVILSWKIKLVQVP 232 (512)
Q Consensus 218 fGvvt~~~~~l~p~~ 232 (512)
.||||+++||++|..
T Consensus 182 ~~II~~a~~~L~~~~ 196 (302)
T PRK14652 182 GAVITRVEVRLRPGD 196 (302)
T ss_pred CeEEEEEEEEEecCC
Confidence 489999999999854
No 17
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.79 E-value=2.8e-19 Score=178.35 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=132.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc---
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT--- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~--- 144 (512)
.-.|.+++.|+|++||++++++|+++++|+.++|+|||....+...+ +++|++++|+++.++. +.+++|++|+.
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 34688999999999999999999999999999999999987776554 8999999998887665 56899999998
Q ss_pred -----cccccccCccCCCCccccccccCCCCCCccccccchhh-heeeEEEEecCCeEEeccCCCchhHHHHhhcCCCc-
Q 040700 145 -----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVD-NIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAAS- 217 (512)
Q Consensus 145 -----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D-~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~- 217 (512)
..+|+ .|.+..+|++| ++||+++++++.||..++ +|++++||++||++++.. +.|+.|+||-+....
T Consensus 87 l~~~~~~~Gl---~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f~~~ 160 (284)
T TIGR00179 87 LVKYALKNGL---SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIFQHK 160 (284)
T ss_pred HHHHHHHCCC---cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCccccCCC
Confidence 56677 58999999999 789999999999999886 679999999999998633 359999999775322
Q ss_pred e-EEEEEEEEEEEe
Q 040700 218 F-CVILSWKIKLVQ 230 (512)
Q Consensus 218 f-Gvvt~~~~~l~p 230 (512)
. .||++++|++.+
T Consensus 161 ~~~iil~a~~~l~~ 174 (284)
T TIGR00179 161 YVGLVLKAEFQLTL 174 (284)
T ss_pred CcEEEEEEEEEecc
Confidence 2 699999999843
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=3.1e-19 Score=179.48 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=121.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc---
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT--- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~--- 144 (512)
...|.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ +++|+|++|++++++ +.+++|++|+.
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 44689999999999999999999999999999999999885444443 899999889998876 45899999998
Q ss_pred -----cccccccCccCCCCccccccccCCCCCCcccccc-chhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCC-c
Q 040700 145 -----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFG-LSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAA-S 217 (512)
Q Consensus 145 -----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G-~~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g-~ 217 (512)
..+|+. |....+|+.| +.||+.+++++.|| ...|.+.+++|+++||++++.. +.|+.|+||.+... +
T Consensus 110 L~~~~~~~gl~---Gle~~~giPG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~~~~~ 183 (305)
T PRK12436 110 VSRIALDHNLT---GLEFACGIPG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSVFANN 183 (305)
T ss_pred HHHHHHHcCCc---cchhhcCCcc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCcCCCC
Confidence 445442 3333334444 23566666777777 6678889999999999999733 35899999988532 3
Q ss_pred eEEEEEEEEEEEec
Q 040700 218 FCVILSWKIKLVQV 231 (512)
Q Consensus 218 fGvvt~~~~~l~p~ 231 (512)
..||++++||+.+.
T Consensus 184 ~~iil~a~~~l~~~ 197 (305)
T PRK12436 184 HYIILEARFELEEG 197 (305)
T ss_pred CEEEEEEEEEEcCC
Confidence 57999999999865
No 19
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=4.3e-19 Score=178.50 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=129.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc----
Q 040700 69 LKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT---- 144 (512)
Q Consensus 69 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~---- 144 (512)
..+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ |++|++++|++++++. .+++|++|+.
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 4678999999999999999999999999999999999886554444 8999998899998763 4899999998
Q ss_pred ----cccccccCccCCCCccccccccCCCCCCcccccc-chhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCc-e
Q 040700 145 ----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFG-LSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAAS-F 218 (512)
Q Consensus 145 ----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G-~~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~-f 218 (512)
..+|+ .|.+..+||+| +.||+..++++.|| .++|+|++++||++||++++.. ..|+.|+||.+.... -
T Consensus 111 ~~~~~~~Gl---~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~~~~ 184 (307)
T PRK13906 111 SRVARDYAL---TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQKEH 184 (307)
T ss_pred HHHHHHcCC---ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCCCCC
Confidence 45666 57777788888 78999999999995 8899999999999999999733 348999999875322 2
Q ss_pred EEEEEEEEEEEec
Q 040700 219 CVILSWKIKLVQV 231 (512)
Q Consensus 219 Gvvt~~~~~l~p~ 231 (512)
-||++++|++.|.
T Consensus 185 ~ii~~~~~~l~~~ 197 (307)
T PRK13906 185 LVVLEAAFTLAPG 197 (307)
T ss_pred EEEEEEEEEECCC
Confidence 4999999999863
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=1e-18 Score=178.39 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=125.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc---
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT--- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~--- 144 (512)
.-.+.+++.|+|++||++++++|+++++|+.|+|+|||....+.+.+ |+||+++ ++.++++.+..+++|++|+.
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 34688999999999999999999999999999999999886555454 8999998 58888876667999999998
Q ss_pred --------cccccccCccCCCCccccccccCCCCCCccccccchhhheeeEEEEecC-CeEEeccCCCchhHHHHhhcCC
Q 040700 145 --------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQ-GRILDRKSMGEDLFWAIRGGGA 215 (512)
Q Consensus 145 --------~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~-G~~v~~~~~~~dLfwa~rG~g~ 215 (512)
...|+++..|.+++||.+.++.+|++| ..++|.|.++++++.+ |++++.. +.||+|+||++..
T Consensus 107 l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG------~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f 178 (363)
T PRK13903 107 VVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYG------QEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVL 178 (363)
T ss_pred HHHHHHHcCCccccccCCCCcchhhHhhcCCChhH------HHHhhhEeEEEEEECCCCEEEEEE--HHHcceecccccc
Confidence 334555777777777766666666665 3678999999999965 9998743 4699999999621
Q ss_pred --CceEEEEEEEEEEEecC
Q 040700 216 --ASFCVILSWKIKLVQVP 232 (512)
Q Consensus 216 --g~fGvvt~~~~~l~p~~ 232 (512)
++++|||+++||++|..
T Consensus 179 ~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 179 KHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCCCCEEEEEEEEEEEcCC
Confidence 35899999999999873
No 21
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.78 E-value=2.2e-18 Score=173.51 Aligned_cols=168 Identities=21% Similarity=0.223 Sum_probs=145.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCcc-EEEeCCCCeEEEecCcc--
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRS-INISLTDETAWVQAGAT-- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~-i~~d~~~~~v~v~~G~~-- 144 (512)
..+.+-|-+|+|++|+.++|+.|++++.++++.|.|||........ |.+|+|..||+ +++|++..+++|++|++
T Consensus 47 ~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlr 123 (518)
T KOG4730|consen 47 TCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLR 123 (518)
T ss_pred hhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHH
Confidence 3456678899999999999999999999999999999998876654 58899999999 48999999999999998
Q ss_pred ------cccccccC-ccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-ccCCCchhHHHHhhcCCC
Q 040700 145 ------ASKIHGFP-AGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RKSMGEDLFWAIRGGGAA 216 (512)
Q Consensus 145 ------~~~g~~~~-~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~rG~g~g 216 (512)
+..|++++ .|....+.|||++..|.||.....|+.....++-..++.+||.++. ++..+||+|.|.+-+- |
T Consensus 124 QLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL-G 202 (518)
T KOG4730|consen 124 QLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL-G 202 (518)
T ss_pred HHHHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc-c
Confidence 66788887 4778888999999999999876667777777777777788998775 7788999999999998 7
Q ss_pred ceEEEEEEEEEEEecCceEEEEE
Q 040700 217 SFCVILSWKIKLVQVPETVTVFR 239 (512)
Q Consensus 217 ~fGvvt~~~~~l~p~~~~~~~~~ 239 (512)
.+|||.++||++.|.-+....+.
T Consensus 203 ~LGVIs~VTl~~vp~Fk~s~t~~ 225 (518)
T KOG4730|consen 203 VLGVISQVTLSVVPAFKRSLTYV 225 (518)
T ss_pred ceeEEEEEEEEEEecceeeeEEE
Confidence 99999999999999877554433
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=155.13 Aligned_cols=191 Identities=24% Similarity=0.227 Sum_probs=151.9
Q ss_pred cCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCC-CCcccCCC--eEEEEecCCccE-EEeCCCCeEE
Q 040700 63 FATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDG-LSYVSNVP--FVILDMFNLRSI-NISLTDETAW 138 (512)
Q Consensus 63 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~s~~~~~~--g~vIdl~~l~~i-~~d~~~~~v~ 138 (512)
|.....+.|..||.|+..+||.++|+.|.++|+-+.+.|||+|.++ .....++. .+.+|++.||+| -+|.++-|++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 3445677999999999999999999999999999999999999774 33333322 345688899997 5799999999
Q ss_pred EecCcc--------cccccccCccCCCC----ccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-----ccC
Q 040700 139 VQAGAT--------ASKIHGFPAGVCPT----LGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-----RKS 201 (512)
Q Consensus 139 v~~G~~--------~~~g~~~~~G~~~~----vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-----~~~ 201 (512)
+++|+. ...|++ .|..|+ ..+||++...+.|+--..||.+-|-|+-+++|++.|.+.. .-+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t--~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS 310 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFT--CGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMS 310 (613)
T ss_pred EecCcchHHHHHHHhhcCcc--cCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCccc
Confidence 999998 344554 344443 3689999999999999999999999999999999998872 234
Q ss_pred CCchhHHHHhhcCCCceEEEEEEEEEEEecCceEEEEEEEecccchHHHHHHHHHHHH
Q 040700 202 MGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVA 259 (512)
Q Consensus 202 ~~~dLfwa~rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
..||+-.-+-|+. |++||||++++|+.|.|+......+.|+. ..+-+..+++++
T Consensus 311 ~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN---FEqGV~f~REvA 364 (613)
T KOG1233|consen 311 SGPDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN---FEQGVNFFREVA 364 (613)
T ss_pred CCCCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc---HHHHHHHHHHHH
Confidence 5799999999999 89999999999999999865544555542 233344555554
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.68 E-value=1.7e-16 Score=159.01 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=125.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCc-cEEEeCCCCeEEEecCcc---
Q 040700 69 LKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLR-SINISLTDETAWVQAGAT--- 144 (512)
Q Consensus 69 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~-~i~~d~~~~~v~v~~G~~--- 144 (512)
-...+++.|+|++|+++++++|+++++|+.++|+|||....+.+.+ |+||+++.++ ++..+.+..+++|++|+.
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~ 96 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMAG 96 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHHH
Confidence 3567899999999999999999999999999999999998877665 8999998754 666665555899999998
Q ss_pred -----cccccccCccCCCCccccccccCCCCCCccccc-cchhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCc-
Q 040700 145 -----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKF-GLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAAS- 217 (512)
Q Consensus 145 -----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~-G~~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~- 217 (512)
..+|+ .|....+||+| ++||+.-++.+.| +.++|.|+++++++.+|++++.. ..||+|+||-+..-.
T Consensus 97 l~~~~~~~GL---~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~~~~ 170 (295)
T PRK14649 97 TARRLAAQGW---AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVLKQL 170 (295)
T ss_pred HHHHHHHcCC---ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeecccc
Confidence 56676 67778889988 6677444455555 57889999999999999998643 349999999874222
Q ss_pred --------eEEEEEEEEEEEecC
Q 040700 218 --------FCVILSWKIKLVQVP 232 (512)
Q Consensus 218 --------fGvvt~~~~~l~p~~ 232 (512)
--||++++|++.|..
T Consensus 171 ~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 171 RADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred cccccccCCeEEEEEEEEECCCC
Confidence 138999999987653
No 24
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.66 E-value=2.4e-16 Score=155.18 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=149.4
Q ss_pred cccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeE
Q 040700 59 RNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETA 137 (512)
Q Consensus 59 ~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v 137 (512)
+|.-|-....-.-..+..|.|+++|++++++|.++++.+++.||-++..|.|...- +-+||+|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 45556554455667999999999999999999999999999999999887776643 2689999999997 899999999
Q ss_pred EEecCcc--------cccccccC--ccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe------ccC
Q 040700 138 WVQAGAT--------ASKIHGFP--AGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD------RKS 201 (512)
Q Consensus 138 ~v~~G~~--------~~~g~~~~--~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~------~~~ 201 (512)
++++|+. ..+|+.+| .|.-.++-|||.+...+-|..--+||...-+|+++|+|+++|+++. ...
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 9999998 66788887 4666677799999998888888899999999999999999999983 223
Q ss_pred CCchhHHHHhhcCCCceEEEEEEEEEEEecCceEEE
Q 040700 202 MGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTV 237 (512)
Q Consensus 202 ~~~dLfwa~rG~g~g~fGvvt~~~~~l~p~~~~~~~ 237 (512)
..-||-.-..|+. |++||||++++-+.|.|..+..
T Consensus 237 TgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 3458888889998 8999999999999998875543
No 25
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.65 E-value=3.5e-17 Score=117.44 Aligned_cols=47 Identities=45% Similarity=0.834 Sum_probs=34.6
Q ss_pred cccccCCccCCCCCCCCccccchhhhhcccccHHHHHHhhhccCCCCCCcCCCCCC
Q 040700 453 AFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIP 508 (512)
Q Consensus 453 ~Y~Ny~d~~l~~~~~~~~~~~~~w~~~yyG~ny~RL~~iK~kyDP~nvF~~~qsI~ 508 (512)
+|+||+|.+++ ..+|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~---------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP---------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG---------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc---------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999998864 126999999999999999999999999999999996
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.59 E-value=6e-15 Score=147.36 Aligned_cols=151 Identities=18% Similarity=0.245 Sum_probs=125.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc-----
Q 040700 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT----- 144 (512)
Q Consensus 70 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~----- 144 (512)
...+++.|+|++|++++++++++ ++|+.+.|+|+|....+.+.+ ++||.+++|+.++++ +..++|+||+.
T Consensus 33 ~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~--~~~v~v~AG~~l~~L~ 107 (297)
T PRK14653 33 PVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVD--NDKIICESGLSLKKLC 107 (297)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEe--CCEEEEeCCCcHHHHH
Confidence 45689999999999999999999 999999999999998777665 899999779999886 35899999998
Q ss_pred ---cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCc--e
Q 040700 145 ---ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAAS--F 218 (512)
Q Consensus 145 ---~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~--f 218 (512)
..+|+ .|....+||+|. .||+.-++++.||. +.|.|+++++++ +|++++.. ..|+-|.||-+.-.. -
T Consensus 108 ~~~~~~GL---~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~~~~~ 180 (297)
T PRK14653 108 LVAAKNGL---SGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFKEEKD 180 (297)
T ss_pred HHHHHCCC---cchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCCCCCc
Confidence 45566 666677777774 58888889999998 889999999999 78887633 349999999764322 1
Q ss_pred EEEEEEEEEEEecC
Q 040700 219 CVILSWKIKLVQVP 232 (512)
Q Consensus 219 Gvvt~~~~~l~p~~ 232 (512)
-|||+++||+.|..
T Consensus 181 ~iI~~a~f~L~~~~ 194 (297)
T PRK14653 181 LIILRVTFKLKKGN 194 (297)
T ss_pred EEEEEEEEEEecCC
Confidence 39999999998753
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.49 E-value=1.2e-13 Score=137.68 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=124.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcc-cCCCeEEEEecCCccEEEeCCCCeEEEecCcc----
Q 040700 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYV-SNVPFVILDMFNLRSINISLTDETAWVQAGAT---- 144 (512)
Q Consensus 70 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~-~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~---- 144 (512)
...+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+ .+ ++||.+.+|+.++++. ..++|++|+.
T Consensus 32 ~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~l 107 (302)
T PRK14650 32 ISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFEDL 107 (302)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHHHH
Confidence 4568999999999999999999999999999999998877665 54 7889886799998763 4799999998
Q ss_pred ----cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCc-e
Q 040700 145 ----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAAS-F 218 (512)
Q Consensus 145 ----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~-f 218 (512)
..+|+ .|....+||+| +.||+.-++.+.||. +.|.|.++++++.+|++++.. ..|+.|+||-+.... -
T Consensus 108 ~~~~~~~gl---~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f~~~~ 181 (302)
T PRK14650 108 CKFALQNEL---SGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPFQNKN 181 (302)
T ss_pred HHHHHHcCC---chhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccCCCCC
Confidence 45565 66667777777 447777788888875 679999999999999998633 359999999775321 2
Q ss_pred EEEEEEEEEEEecC
Q 040700 219 CVILSWKIKLVQVP 232 (512)
Q Consensus 219 Gvvt~~~~~l~p~~ 232 (512)
.||++++|++.|..
T Consensus 182 ~iIl~a~f~L~~~~ 195 (302)
T PRK14650 182 TFILKATLNLKKGN 195 (302)
T ss_pred EEEEEEEEEEcCCC
Confidence 59999999998754
No 28
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=3e-13 Score=132.74 Aligned_cols=156 Identities=22% Similarity=0.189 Sum_probs=127.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc---
Q 040700 68 TLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT--- 144 (512)
Q Consensus 68 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~--- 144 (512)
.....+++.|++++|++++++++.+.++|+.+.|+|+|..-.+.+.+ +++|.+.+++.++++.+...+++++|+.
T Consensus 18 Gg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~ 95 (291)
T COG0812 18 GGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWHD 95 (291)
T ss_pred CcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHHH
Confidence 34567899999999999999999999999999999999887666655 8999999998888877777999999997
Q ss_pred -----cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCce
Q 040700 145 -----ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASF 218 (512)
Q Consensus 145 -----~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~f 218 (512)
..+|+ .|....+||+| +.||..-++.+.||. +.|.+.++++++.+|++++-. +.||-|+||-+....-
T Consensus 96 l~~~~~~~gl---~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f~~~ 169 (291)
T COG0812 96 LVRFALENGL---SGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPFKKE 169 (291)
T ss_pred HHHHHHHcCC---cchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcCCCC
Confidence 34454 55555666666 336677777777766 679999999999999999732 3599999998764333
Q ss_pred -EEEEEEEEEEEec
Q 040700 219 -CVILSWKIKLVQV 231 (512)
Q Consensus 219 -Gvvt~~~~~l~p~ 231 (512)
.||++++|++.|-
T Consensus 170 ~~vvl~v~f~L~~~ 183 (291)
T COG0812 170 YLVVLSVEFKLTKG 183 (291)
T ss_pred CEEEEEEEEEeCCC
Confidence 8999999999875
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.47 E-value=1.2e-13 Score=139.58 Aligned_cols=152 Identities=15% Similarity=0.132 Sum_probs=122.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEe--CCC-CeEEEecCcc--
Q 040700 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINIS--LTD-ETAWVQAGAT-- 144 (512)
Q Consensus 70 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d--~~~-~~v~v~~G~~-- 144 (512)
...+++.|+|++|+++++++++++++|+.+.|+|+|....+ +.+ |+||.+ +|+.++++ .++ ..+++++|+.
T Consensus 20 ~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~~ 95 (334)
T PRK00046 20 RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGENWH 95 (334)
T ss_pred EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCCcHH
Confidence 55689999999999999999999999999999999988766 454 888988 48888873 222 2799999998
Q ss_pred ------cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEEecC-CeEEeccCCCchhHHHHhhcCCC
Q 040700 145 ------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIVDVQ-GRILDRKSMGEDLFWAIRGGGAA 216 (512)
Q Consensus 145 ------~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV~a~-G~~v~~~~~~~dLfwa~rG~g~g 216 (512)
..+|+ .|....+||+| +.||+.-+|.+.||. +.|.|.++++++.+ |++++.. ..|+.|+||-+...
T Consensus 96 ~l~~~~~~~gl---~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~S~f~ 169 (334)
T PRK00046 96 DLVLWTLQQGM---PGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRDSIFK 169 (334)
T ss_pred HHHHHHHHcCc---hhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccccccCC
Confidence 45566 66677777777 447777788888885 56999999999987 9988633 35999999987532
Q ss_pred c----eEEEEEEEEEEEec
Q 040700 217 S----FCVILSWKIKLVQV 231 (512)
Q Consensus 217 ~----fGvvt~~~~~l~p~ 231 (512)
. --||++++|++.|-
T Consensus 170 ~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 170 HEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred CCCcCCEEEEEEEEEecCC
Confidence 2 24999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.41 E-value=8.7e-13 Score=133.29 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=122.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEe---CCCCeEEEecCcc--
Q 040700 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINIS---LTDETAWVQAGAT-- 144 (512)
Q Consensus 70 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d---~~~~~v~v~~G~~-- 144 (512)
...+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.+ |+||.+++|+.+++. .+...++|++|+.
T Consensus 29 ~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~~ 106 (354)
T PRK14648 29 AAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPVA 106 (354)
T ss_pred EEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCcHH
Confidence 556899999999999999999999999999999999887776665 899999779988752 2224799999997
Q ss_pred ------cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEE--------------------ecCCeE-
Q 040700 145 ------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIV--------------------DVQGRI- 196 (512)
Q Consensus 145 ------~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV--------------------~a~G~~- 196 (512)
..+|+ .|....+||+| +.||+.-+|.+.||. +.|.|.+++++ +.+|++
T Consensus 107 ~Lv~~~~~~gl---~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (354)
T PRK14648 107 ALLAFCAHHAL---RGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRGECL 182 (354)
T ss_pred HHHHHHHHcCC---cchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCCCcee
Confidence 45555 66777777777 447788888888885 56999999999 566776
Q ss_pred ------------EeccCCCchhHHHHhhcCCCc---------eEEEEEEEEEEEecC
Q 040700 197 ------------LDRKSMGEDLFWAIRGGGAAS---------FCVILSWKIKLVQVP 232 (512)
Q Consensus 197 ------------v~~~~~~~dLfwa~rG~g~g~---------fGvvt~~~~~l~p~~ 232 (512)
++. .+.|+.|+||-+.... --||++++|++.|..
T Consensus 183 ~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 183 GLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 221 2458999999875322 239999999998753
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.32 E-value=1.4e-12 Score=129.37 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccC---CCeEEEEecCCcc-EEEeCCCCeEEEecCcc--------cc
Q 040700 79 HESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSN---VPFVILDMFNLRS-INISLTDETAWVQAGAT--------AS 146 (512)
Q Consensus 79 s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~---~~g~vIdl~~l~~-i~~d~~~~~v~v~~G~~--------~~ 146 (512)
.+.+||+-|+.-+..+-+-.+..+.-+|...|.... ....-|++..|.+ +++|.++.||+|+|+++ -+
T Consensus 62 rVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip 141 (543)
T KOG1262|consen 62 RVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIP 141 (543)
T ss_pred HHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhcc
Confidence 344455555443434333333334444443333221 0123455654444 48899999999999998 45
Q ss_pred cccccC-ccCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe--ccCCCchhHHHHhhcCCCceEEEEE
Q 040700 147 KIHGFP-AGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD--RKSMGEDLFWAIRGGGAASFCVILS 223 (512)
Q Consensus 147 ~g~~~~-~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~--~~~~~~dLfwa~rG~g~g~fGvvt~ 223 (512)
.|++++ .....+.++||++.|-|+-..|++||+..+.+.+.|||+|||++++ ..++++|||+|+-.+. |++|..+.
T Consensus 142 ~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVa 220 (543)
T KOG1262|consen 142 KGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVA 220 (543)
T ss_pred CCceeeeecccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc-Cchheeee
Confidence 677654 3455677899999999999999999999999999999999999995 4457899999999999 89999999
Q ss_pred EEEEEEecCceEE
Q 040700 224 WKIKLVQVPETVT 236 (512)
Q Consensus 224 ~~~~l~p~~~~~~ 236 (512)
+|+|+.|..+.+.
T Consensus 221 atiriIkvK~Yvk 233 (543)
T KOG1262|consen 221 ATIRIIKVKKYVK 233 (543)
T ss_pred eEEEEEeccceEE
Confidence 9999999988764
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.18 E-value=8e-11 Score=115.89 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=109.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecC-CccEEEeCCCCeEEEecCcc-----
Q 040700 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFN-LRSINISLTDETAWVQAGAT----- 144 (512)
Q Consensus 71 p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~-l~~i~~d~~~~~v~v~~G~~----- 144 (512)
..+++ |.+++|+++++ ++|+.+.|+|+|....+.+.+ ++||.+++ ++.++++. ++++|+.
T Consensus 21 A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l~ 86 (273)
T PRK14651 21 AELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGLV 86 (273)
T ss_pred EEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHHH
Confidence 34566 99999999988 589999999999887776665 89998865 66665532 6999997
Q ss_pred ---cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCceEE
Q 040700 145 ---ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCV 220 (512)
Q Consensus 145 ---~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~fGv 220 (512)
..+|+ .|....+||+| +.||+.-++.+.||. +.|.|.++++++ +|++++.. +.|+.|+||-+....--|
T Consensus 87 ~~~~~~gl---~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~~~~i 159 (273)
T PRK14651 87 RRAARLGL---SGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLPPGHV 159 (273)
T ss_pred HHHHHCCC---cchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCCCCEE
Confidence 45565 56677777777 447788888888885 669999999997 89988633 359999999775332249
Q ss_pred EEEEEEEEEec
Q 040700 221 ILSWKIKLVQV 231 (512)
Q Consensus 221 vt~~~~~l~p~ 231 (512)
|++++|++.|.
T Consensus 160 Il~a~f~l~~~ 170 (273)
T PRK14651 160 VTRVRLKLRPS 170 (273)
T ss_pred EEEEEEEECCC
Confidence 99999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.69 E-value=3.6e-08 Score=96.33 Aligned_cols=134 Identities=18% Similarity=0.057 Sum_probs=100.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc-----
Q 040700 70 KPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT----- 144 (512)
Q Consensus 70 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~----- 144 (512)
...+++.|++.+ + ++|+.+.|+|+|....+.+.+ +++ -+++|+.++++. .++++++|+.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 345677788877 5 899999999999887666543 454 345688888754 4799999998
Q ss_pred ---cccccccCccCCCCccccccccCCCCCCccccccc-hhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCceEE
Q 040700 145 ---ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGL-SVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCV 220 (512)
Q Consensus 145 ---~~~g~~~~~G~~~~vgvgG~~~gGg~g~~s~~~G~-~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~fGv 220 (512)
..+|+ .|....+||+| +.||+.-++.+.||. ++|.|.++++++ |+ + ...|+.|+||-+.. -.|
T Consensus 82 ~~~~~~gl---~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~--~~i 148 (257)
T PRK13904 82 NYAKKNNL---GGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI--NGV 148 (257)
T ss_pred HHHHHCCC---chhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC--CcE
Confidence 44555 66666777777 447777778888875 569999999998 42 2 24599999997752 259
Q ss_pred EEEEEEEEEecC
Q 040700 221 ILSWKIKLVQVP 232 (512)
Q Consensus 221 vt~~~~~l~p~~ 232 (512)
|++++||+.|..
T Consensus 149 Il~a~f~l~~~~ 160 (257)
T PRK13904 149 ILEARFKKTHGF 160 (257)
T ss_pred EEEEEEEECCCC
Confidence 999999998754
No 34
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=92.38 E-value=0.044 Score=54.41 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.9
Q ss_pred chhhhhcccccHHHHHHhhhccCCCCCCcCCCCC
Q 040700 474 KIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSI 507 (512)
Q Consensus 474 ~~w~~~yyG~ny~RL~~iK~kyDP~nvF~~~qsI 507 (512)
++|+ .-||+.|+|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 3685 57899999999999999999999988877
No 35
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.87 E-value=0.76 Score=44.88 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=22.6
Q ss_pred hhhhcccccHHHHHHhhhccCCCCCCcCC
Q 040700 476 YGIKYFKNNFDRLVRVKTSVDPDNFFTYE 504 (512)
Q Consensus 476 w~~~yyG~ny~RL~~iK~kyDP~nvF~~~ 504 (512)
....| .++++.++||+++||+++|.++
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 34455 6899999999999999999875
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=88.45 E-value=0.44 Score=44.02 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=43.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCC-cccCCCeEEEEecCC---ccEEEeCCCCeEEEecCcc
Q 040700 72 LVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLS-YVSNVPFVILDMFNL---RSINISLTDETAWVQAGAT 144 (512)
Q Consensus 72 ~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s-~~~~~~g~vIdl~~l---~~i~~d~~~~~v~v~~G~~ 144 (512)
..++.|+|.+|+.++++ .+-...+.+||++....- .+......+||++++ +.|+.+ ++.+++|++++
T Consensus 3 ~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~--~~~l~IGA~vt 73 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISED--DGGLRIGAAVT 73 (171)
T ss_dssp -EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEE--TSEEEEETTSB
T ss_pred eEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEe--ccEEEECCCcc
Confidence 45799999999999988 233578889998843111 110012478999876 445554 67999999998
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=87.28 E-value=1.4 Score=43.63 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=45.5
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCC--ccEEEeCCCCeEEEecCcc
Q 040700 73 VIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNL--RSINISLTDETAWVQAGAT 144 (512)
Q Consensus 73 ~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l--~~i~~d~~~~~v~v~~G~~ 144 (512)
-+..|+|.+|+.++++ +++-...+.+||++........ ...++||++++ +.|+ .+++.+++|++++
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~~~~-~~~~lIdi~~ieL~~I~--~~~~~l~IGA~vT 71 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATPTRT-DKKIAISLQDLELDWIE--WDNGALRIGAMSR 71 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhhCCC-CCCEEEEcCCCCCCeEE--ecCCEEEEccCCc
Confidence 3678999999988765 3433457899999974221111 12578999965 4444 4567999999999
No 38
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=86.51 E-value=0.95 Score=43.54 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHhhcccccCCCCccccccCCccCCCCCCCCccccchhhhhcccc-cHHHHHHhhhccCCCCCCc
Q 040700 426 EVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKN-NFDRLVRVKTSVDPDNFFT 502 (512)
Q Consensus 426 ~~~~~~~~w~~~~~~~l~p~~~~~~~g~Y~Ny~d~~l~~~~~~~~~~~~~w~~~yyG~-ny~RL~~iK~kyDP~nvF~ 502 (512)
++.+...++.+++++.+..+ +|+-.-+ +.. + .....|-..++|. .+.-+++||+.+||+|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~-----gG~is~e-HG~-G-------~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 181 EEPERAEALWDELYELVLEL-----GGSISAE-HGI-G-------KLKKPYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----T-BBSSS-SGG-G-------HHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHHHHHHHHHHHHHHhc-----ccccccc-cch-h-------hhhHHHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 45556667777776665544 1222221 111 1 0112344556665 7999999999999999986
No 39
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=84.19 E-value=1.1 Score=44.23 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=19.4
Q ss_pred hhhhhcccccHHHHHHhhhccCCCCCCcCC
Q 040700 475 IYGIKYFKNNFDRLVRVKTSVDPDNFFTYE 504 (512)
Q Consensus 475 ~w~~~yyG~ny~RL~~iK~kyDP~nvF~~~ 504 (512)
...+.| .++++..++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344555 8999999999999999999763
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=83.23 E-value=3 Score=41.25 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=44.0
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCC--ccEEEeCCCCeEEEecCcc
Q 040700 74 IVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNL--RSINISLTDETAWVQAGAT 144 (512)
Q Consensus 74 vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l--~~i~~d~~~~~v~v~~G~~ 144 (512)
+..|+|.+|..++++ +++-.-.+.+||++..-.-... ...++||++++ +.|+. +++.+++|++++
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~-~~~~lIdl~~ieL~~I~~--~~~~l~IGA~~t 70 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRT-DKKVAISLDKLALDKIEL--QGGALHIGAMCH 70 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhccc-CCCEEEEcCCCCCCcEEe--cCCEEEEEeCCc
Confidence 578999999887765 3332356789999975221111 12478999865 44544 456899999998
No 41
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=77.83 E-value=4.3 Score=44.66 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=22.9
Q ss_pred hhhhcccccHHHHHHhhhccCCCCCCcCC
Q 040700 476 YGIKYFKNNFDRLVRVKTSVDPDNFFTYE 504 (512)
Q Consensus 476 w~~~yyG~ny~RL~~iK~kyDP~nvF~~~ 504 (512)
..+.| .++++.++||+++||+++|.++
T Consensus 477 l~~~Y--P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 477 VIRKY--PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred HHHhC--CCHHHHHHHHHhcCCCCccCCH
Confidence 44555 5899999999999999999875
No 42
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=75.74 E-value=3 Score=44.15 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.8
Q ss_pred hhhhhccc-ccHHHHHHhhhccCCCCCCc
Q 040700 475 IYGIKYFK-NNFDRLVRVKTSVDPDNFFT 502 (512)
Q Consensus 475 ~w~~~yyG-~ny~RL~~iK~kyDP~nvF~ 502 (512)
.|....|| ..++-+++||+.+||+|+|+
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 46666677 47999999999999999986
No 43
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=73.33 E-value=4.8 Score=40.51 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=44.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCC-CCcccCCCeEEEEecCCc---cEEEeCCCCeEEEecCcc
Q 040700 73 VIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDG-LSYVSNVPFVILDMFNLR---SINISLTDETAWVQAGAT 144 (512)
Q Consensus 73 ~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~s~~~~~~g~vIdl~~l~---~i~~d~~~~~v~v~~G~~ 144 (512)
-++.|+|.+|..++++- +. ...+.+||++... ..........+||++++. .|+. .+++.+++|++++
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~-~~~~~l~IGA~vt 76 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITL-AEDGSIRIGAATT 76 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEe-cCCCEEEEEeCCc
Confidence 57889999999888763 22 3578999998631 111111125789998755 4544 2346799999998
No 44
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=70.77 E-value=5.9 Score=40.46 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCC-CCcccCCCeEEEEecCC---ccEEEeCCCCeEEEecCcc
Q 040700 73 VIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDG-LSYVSNVPFVILDMFNL---RSINISLTDETAWVQAGAT 144 (512)
Q Consensus 73 ~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g-~s~~~~~~g~vIdl~~l---~~i~~d~~~~~v~v~~G~~ 144 (512)
-++.|+|.+|..++++- +. .-.+.+||++... .-.+......+||++++ +.|+. +.+.+++|++++
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~--~~~~l~IGA~vT 75 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLST--LADGLRIGAGVT 75 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEe--cCCEEEEeccCc
Confidence 47899999998887653 22 3467999997531 11111112578999865 45554 456899999998
No 45
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=70.75 E-value=7.2 Score=42.02 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=46.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCC-CcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc
Q 040700 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGL-SYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 71 p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~ 144 (512)
..-++.|+|.+|+.++++- +. ...+.+||++.... .........+||++++..+ .+..+++.+++|++++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT 263 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVT 263 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCc
Confidence 3457999999999888763 22 35788999986321 1111112578999876543 2333456899999998
No 46
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=69.00 E-value=6.5 Score=38.92 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEeecccCCCCC-Ccc-cCCCeEEEEecCCccE-EEeCCCCeEEEecCcc
Q 040700 77 AKHESHVQATVICSKKFGLQIRIRSGGHDYDGL-SYV-SNVPFVILDMFNLRSI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 77 p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~-~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~ 144 (512)
|+|.+|+.++++-. . ...+.+||++..-. ... ......+||++++... .++.+++.+++|++++
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt 67 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTT 67 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCc
Confidence 77888888877642 2 35789999986311 111 0112578999876543 3444567999999998
No 47
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=66.83 E-value=9.7 Score=41.97 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=27.9
Q ss_pred hhhhhccc-ccHHHHHHhhhccCCCCCCcCCCCCC
Q 040700 475 IYGIKYFK-NNFDRLVRVKTSVDPDNFFTYEQSIP 508 (512)
Q Consensus 475 ~w~~~yyG-~ny~RL~~iK~kyDP~nvF~~~qsI~ 508 (512)
.|-..+|| +.++-+++||+.+||+|+++-..=|+
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 57778888 47999999999999999998655444
No 48
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=65.32 E-value=8.7 Score=41.80 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=25.7
Q ss_pred hhhhhccc-ccHHHHHHhhhccCCCCCCcCCCCC
Q 040700 475 IYGIKYFK-NNFDRLVRVKTSVDPDNFFTYEQSI 507 (512)
Q Consensus 475 ~w~~~yyG-~ny~RL~~iK~kyDP~nvF~~~qsI 507 (512)
.|-...|| +.++-+++||+.+||+|+++-..-|
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 45555677 6799999999999999999754433
No 49
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=63.33 E-value=3.6 Score=43.71 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.8
Q ss_pred hhhhcccccHHHHHHhhhccCCCCCCcCCC
Q 040700 476 YGIKYFKNNFDRLVRVKTSVDPDNFFTYEQ 505 (512)
Q Consensus 476 w~~~yyG~ny~RL~~iK~kyDP~nvF~~~q 505 (512)
.... |. ++++.++||+++||+++|.+++
T Consensus 386 l~~~-YP-~~~~F~~~r~~~DP~g~F~n~~ 413 (419)
T TIGR01679 386 LRER-YP-RWDDFAAVRDDLDPDRRFLNPY 413 (419)
T ss_pred HHHH-Cc-CHHHHHHHHHHhCCCCccCCHH
Confidence 4444 43 7999999999999999998764
No 50
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=62.16 E-value=14 Score=39.75 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=60.7
Q ss_pred ccccceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcC-CeEEE-----eeccc-CCCC
Q 040700 36 IAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFG-LQIRI-----RSGGH-DYDG 108 (512)
Q Consensus 36 ~~~~~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~-~~~~v-----~ggGh-~~~g 108 (512)
.+|.|.++.-+=|+-+++. .++..+. .+-.|..+++|.|+++|.+++++|+++- .|+.+ |+||| ||..
T Consensus 122 ~~I~gvvIsAGIP~le~A~-ElI~~L~----~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweD 196 (717)
T COG4981 122 APIDGVVISAGIPSLEEAV-ELIEELG----DDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWED 196 (717)
T ss_pred CCcceEEEecCCCcHHHHH-HHHHHHh----hcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhh
Confidence 3568999998888888874 2332221 2347889999999999999999999974 45554 34555 4654
Q ss_pred CCcccCCCeEEEEe-cCCccEEEeCCCCeEEEecCcc
Q 040700 109 LSYVSNVPFVILDM-FNLRSINISLTDETAWVQAGAT 144 (512)
Q Consensus 109 ~s~~~~~~g~vIdl-~~l~~i~~d~~~~~v~v~~G~~ 144 (512)
.. .++|-+ +.+++ .++-++.+|+|..
T Consensus 197 ld------~llL~tYs~lR~----~~NIvl~vGgGiG 223 (717)
T COG4981 197 LD------DLLLATYSELRS----RDNIVLCVGGGIG 223 (717)
T ss_pred cc------cHHHHHHHHHhc----CCCEEEEecCCcC
Confidence 32 122322 33332 1233567888876
No 51
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=44.41 E-value=11 Score=39.73 Aligned_cols=20 Identities=30% Similarity=0.873 Sum_probs=18.8
Q ss_pred ccHHHHHHhhhccCCCCCCc
Q 040700 483 NNFDRLVRVKTSVDPDNFFT 502 (512)
Q Consensus 483 ~ny~RL~~iK~kyDP~nvF~ 502 (512)
.|.++..++|+++||.++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 69999999999999999994
No 52
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=42.52 E-value=15 Score=38.03 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.5
Q ss_pred cc-HHHHHHhhhccCCCCCCc
Q 040700 483 NN-FDRLVRVKTSVDPDNFFT 502 (512)
Q Consensus 483 ~n-y~RL~~iK~kyDP~nvF~ 502 (512)
.+ .+-.++||++|||.++|+
T Consensus 324 ~~~~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCC
Confidence 45 688899999999999996
No 53
>PLN02906 xanthine dehydrogenase
Probab=39.11 E-value=32 Score=42.12 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=45.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCC-CcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc
Q 040700 72 LVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGL-SYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 72 ~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~ 144 (512)
.-.+.|+|.+|+.++++- +. .-.+.+||++.... ........++||++++..+ .|..+++.++||++++
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT 299 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVR 299 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCc
Confidence 357899999999887653 21 24678999986321 1111112578999875443 2333456899999998
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.02 E-value=22 Score=36.17 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=40.6
Q ss_pred ceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCC------HHHHHHHHHHHHhcC------CeEEEeecc
Q 040700 40 EAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKH------ESHVQATVICSKKFG------LQIRIRSGG 103 (512)
Q Consensus 40 ~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~dv~~~v~~a~~~~------~~~~v~ggG 103 (512)
|.|..|+...|.+.++. -+.||. ....+++|.. +++|.++++.+.+.+ +=+.+||||
T Consensus 18 ~vITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred EEEeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 45666888889998763 344764 3446666655 688999999998654 567778887
No 55
>PLN00192 aldehyde oxidase
Probab=36.85 E-value=56 Score=40.15 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=46.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc
Q 040700 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 71 p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~ 144 (512)
..-.+.|.|.+|+.++++-....+-...+..||++..-.-. .....++||++++..+ .+..+++.++||++++
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vT 306 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVT 306 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCc
Confidence 34688999999998876642100123667889998642211 1112578999875443 2334557899999998
No 56
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=36.48 E-value=55 Score=40.16 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=45.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCC-CcccCCCeEEEEecCCccE-EEeCCCCeEEEecCcc
Q 040700 72 LVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGL-SYVSNVPFVILDMFNLRSI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 72 ~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~~~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~ 144 (512)
.-.+.|+|.+|+.++++- +. .-++..||++..-. .........+||++++..+ .+..+++.++||++++
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT 307 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLS 307 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEecccc
Confidence 357899999999988764 22 35678999997421 1111112478999875543 2334567899999998
No 57
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=35.23 E-value=48 Score=35.33 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=41.9
Q ss_pred ceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCH------HHHHHHHHHHHhc--CCeEEEeecc
Q 040700 40 EAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHE------SHVQATVICSKKF--GLQIRIRSGG 103 (512)
Q Consensus 40 ~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~------~dv~~~v~~a~~~--~~~~~v~ggG 103 (512)
|.|..|....+.+.++ .-+.||.. -...++|..+ .+|.++++.+.+. ++=+.+||||
T Consensus 139 ~viTs~~gAa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILT--VLRRRFPL-----VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHH--HHHhcCCC-----CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 4566688888999876 33567742 3567777666 8899999998874 6677888888
No 58
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=34.95 E-value=51 Score=34.17 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=43.5
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCCccc-CCCeEEEEecCCccE-EEeCCCCeEEEecCcc
Q 040700 73 VIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVS-NVPFVILDMFNLRSI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 73 ~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~-~~~g~vIdl~~l~~i-~~d~~~~~v~v~~G~~ 144 (512)
.++.|.+.+|...++.. +-..++..|++++.-..... .+-..||-+.++..+ .++..++.+++|+|++
T Consensus 205 r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt 274 (493)
T COG4630 205 RFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVT 274 (493)
T ss_pred eeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCcc
Confidence 57899999998887643 33567777888864222111 011245556655553 4555678999999998
No 59
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=34.56 E-value=97 Score=31.09 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=46.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccCCCCCC-cccCCCeEEEEecCCc-cE-EEeCCCCeEEEecCcc
Q 040700 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLS-YVSNVPFVILDMFNLR-SI-NISLTDETAWVQAGAT 144 (512)
Q Consensus 71 p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~s-~~~~~~g~vIdl~~l~-~i-~~d~~~~~v~v~~G~~ 144 (512)
+..+.+|.|.+|..++++ +.+ .-.+.+|||+....- ........+||++++. .. .+..+.+.+++|+-++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt 75 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVT 75 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeeccc
Confidence 456789999988766665 444 667889999965311 1111124678998874 22 2333566799999998
No 60
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.34 E-value=42 Score=35.83 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=38.7
Q ss_pred ceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCC------HHHHHHHHHHHHhc---CCeEEEeecc
Q 040700 40 EAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKH------ESHVQATVICSKKF---GLQIRIRSGG 103 (512)
Q Consensus 40 ~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~dv~~~v~~a~~~---~~~~~v~ggG 103 (512)
|.|..|+...|.+.++ .-+.||.. -..+++|.. +.+|.++++.+.+. ++=+.+||||
T Consensus 133 ~vits~~~aa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGG 198 (432)
T TIGR00237 133 GVITSQTGAALADILH--ILKRRDPS-----LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGG 198 (432)
T ss_pred EEEeCCccHHHHHHHH--HHHhhCCC-----ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCC
Confidence 4566788889999876 33567742 234555544 48899999888763 4456777777
No 61
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=26.09 E-value=38 Score=37.18 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=20.8
Q ss_pred hhhhcccccHHHHHHhhhccCCCCCCcCC
Q 040700 476 YGIKYFKNNFDRLVRVKTSVDPDNFFTYE 504 (512)
Q Consensus 476 w~~~yyG~ny~RL~~iK~kyDP~nvF~~~ 504 (512)
|.+.| . +++-++|++++||+++|.++
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 44444 3 78889999999999999875
No 62
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=25.64 E-value=39 Score=37.39 Aligned_cols=27 Identities=11% Similarity=0.378 Sum_probs=22.6
Q ss_pred hhhhhcccccHHHHHHhhhccCCCCCCcCC
Q 040700 475 IYGIKYFKNNFDRLVRVKTSVDPDNFFTYE 504 (512)
Q Consensus 475 ~w~~~yyG~ny~RL~~iK~kyDP~nvF~~~ 504 (512)
.+.+.| . +++.+++++++||+++|.++
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 455655 4 99999999999999999875
No 63
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.07 E-value=1.1e+02 Score=30.23 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=43.6
Q ss_pred CccccceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccC
Q 040700 35 SIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105 (512)
Q Consensus 35 ~~~~~~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~ 105 (512)
++-|+|.++-.+..-..+.+..+.+. .-...+.+.++++|+++|+.|.++ ..+.|.+||=+
T Consensus 11 ~ElL~G~ivdtNa~~la~~L~~~G~~---------v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLG 71 (255)
T COG1058 11 DELLSGRIVDTNAAFLADELTELGVD---------LARITTVGDNPDRIVEALREASER-ADVVITTGGLG 71 (255)
T ss_pred cceecCceecchHHHHHHHHHhcCce---------EEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcC
Confidence 45567777765555445444333222 234678999999999999999999 89999999843
No 64
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.47 E-value=1.1e+02 Score=27.31 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCeEEEee
Q 040700 73 VIVAAKHESHVQATVICSKKFGLQIRIRS 101 (512)
Q Consensus 73 ~vv~p~s~~dv~~~v~~a~~~~~~~~v~g 101 (512)
.|+.|.+.+|++.+++.|-+..-|+.+|=
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999998887887763
No 65
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=85 Score=29.40 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCeEEEeecccCCCCC
Q 040700 83 VQATVICSKKFGLQIRIRSGGHDYDGL 109 (512)
Q Consensus 83 v~~~v~~a~~~~~~~~v~ggGh~~~g~ 109 (512)
....++|++++++|+.|.++|.++.-.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~ 104 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIY 104 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHH
Confidence 466788999999999999999986543
No 66
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.55 E-value=62 Score=34.40 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=38.8
Q ss_pred ceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCH------HHHHHHHHHHHhcC-Ce--EEEeecc
Q 040700 40 EAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHE------SHVQATVICSKKFG-LQ--IRIRSGG 103 (512)
Q Consensus 40 ~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~------~dv~~~v~~a~~~~-~~--~~v~ggG 103 (512)
|.|..|......+.++ .-..||.. -..+|+|..+ ++|.++|+.|++.+ +. +..||||
T Consensus 139 GVITS~tgAairDIl~--~~~rR~P~-----~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 139 GVITSPTGAALRDILH--TLSRRFPS-----VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred EEEcCCchHHHHHHHH--HHHhhCCC-----CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 4566677777777765 33557752 3466777654 89999999999887 44 4455555
No 67
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=21.21 E-value=1.4e+02 Score=27.28 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=26.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHh--cCCeEEEeecc
Q 040700 72 LVIVAAKHESHVQATVICSKK--FGLQIRIRSGG 103 (512)
Q Consensus 72 ~~vv~p~s~~dv~~~v~~a~~--~~~~~~v~ggG 103 (512)
..|+.|.+.+|+..+++.|-+ .+-|+.+|-..
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 479999999999999999999 56788887653
No 68
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.76 E-value=1.4e+02 Score=25.71 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhcCCeEEEeecccC
Q 040700 71 PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHD 105 (512)
Q Consensus 71 p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~ 105 (512)
+.+++.-++.+.+...+++|.++++++.+--+|.+
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred CCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 77999999999999999999999999999777865
No 69
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.52 E-value=86 Score=33.65 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEe--ecccC
Q 040700 77 AKHESHVQATVICSKKFGLQIRIR--SGGHD 105 (512)
Q Consensus 77 p~s~~dv~~~v~~a~~~~~~~~v~--ggGh~ 105 (512)
.-|.+||+++|++|+.+|++|.+- .-||.
T Consensus 246 vYT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 246 VYTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred eecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 347899999999999999998764 34564
Done!