BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040703
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 26 QIVISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNALKE 74
Q VI +FY VDP +RNQ +F +F + E + K++ E +Q WR AL E
Sbjct: 99 QTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNE 147
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 29 ISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNALKEFMPSLSGF 82
I +FY++ P + G FGD+F L+E+ K + E+ Q W+ AL E +P L G
Sbjct: 102 IPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQEAL-ESIPKLKGL 154
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 28 VISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNAL 72
V+ VFY+VDP D+R Q G FG SF LE + E+ +WR AL
Sbjct: 99 VMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRAL 141
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 26 QIVISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTE-KLQSWRNAL 72
Q+VI +F+ VD +++ Q G FG F EE K +E + QSW+ AL
Sbjct: 97 QMVIPIFFHVDASEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQAL 141
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 VLYTLPFRDSISLLSCIDTICHDPTQ---IVISVFYQVDPPDMRNQNGNFGDSFLKLEER 57
V++++ F S L+ + I Q IVI +FY+V P ++ G FGD+F LE
Sbjct: 72 VIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERN 131
Query: 58 LKENTEKLQSWRNALKEFMPSL 79
+ Q W+ AL+ S+
Sbjct: 132 NRHMLPITQKWKEALESIPGSI 153
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 27 IVISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNAL 72
I+I +FY++D +++ G FGD+F L ++ + +KL W AL
Sbjct: 108 IIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHKWTEAL 153
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 IVISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNAL 72
+V+ VFY+++ + G FGD+ LE + E++Q W+ AL
Sbjct: 444 VVVPVFYRLNATACKRFMGAFGDNLRNLEWEYRSEPERIQKWKEAL 489
>sp|Q62158|TRI27_MOUSE Zinc finger protein RFP OS=Mus musculus GN=Trim27 PE=1 SV=2
Length = 513
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 35 VDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNALKEF 75
+ PPD++ + F L L E LK+ TEK+QS ++E
Sbjct: 268 ITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQEL 308
>sp|P14373|TRI27_HUMAN Zinc finger protein RFP OS=Homo sapiens GN=TRIM27 PE=1 SV=1
Length = 513
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 35 VDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNALKEF 75
+ PPD++ + F L L E LK+ TEK+QS ++E
Sbjct: 268 ITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQEL 308
>sp|Q8NN37|SYV_CORGL Valine--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=valS PE=3 SV=2
Length = 903
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 6 PFRDSISLLSCID--------------TICHDPTQIVISVFYQVDPPDMRNQNGNFGDSF 51
PFRD +SL D T HDP + + + +D P + ++ G D+
Sbjct: 267 PFRDDLSLKVVADDYVDPEFGSGAVKITPAHDPNDYALGLRHNLDMPTIMDKTGRIADTG 326
Query: 52 LKLEERLKENT-----EKLQSWRNALKEFMP 77
+ + +E E+L + +KE P
Sbjct: 327 TQFDGLTREEARIKVREELAAQGRIVKEIRP 357
>sp|Q3JCL5|MUTS_NITOC DNA mismatch repair protein MutS OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=mutS PE=3 SV=1
Length = 863
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 6 PFRDSISLLSCIDTICHDPTQI-----VISVFYQVDPPDMRNQNGNFGDSFLKLEERLKE 60
PF + LL IC +P + VI++ + + ++R+ +GN G +KLE+R +E
Sbjct: 405 PFPNLHELLQ--RAICENPPVLIRDGGVIALGFDSELDELRHLSGNAGQFLVKLEQRERE 462
Query: 61 NTE 63
T+
Sbjct: 463 RTK 465
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 47 FGDSFLKLEERLKENTEKLQSWRNALKE 74
G +LE+R+K+ EK+ W++ L+E
Sbjct: 296 LGADIARLEQRIKDTQEKIHQWQSELEE 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,252,972
Number of Sequences: 539616
Number of extensions: 1221352
Number of successful extensions: 3627
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3616
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)