Query 040703
Match_columns 88
No_of_seqs 129 out of 979
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.5E-32 3.3E-37 230.5 7.2 84 2-88 69-158 (1153)
2 PLN03194 putative disease resi 100.0 6.8E-29 1.5E-33 175.5 6.1 72 1-86 83-157 (187)
3 PF01582 TIR: TIR domain; Int 99.6 2E-16 4.4E-21 105.2 -1.2 72 2-73 58-140 (141)
4 smart00255 TIR Toll - interleu 99.4 1.8E-12 3.9E-17 84.7 7.6 76 1-78 57-139 (140)
5 PF13676 TIR_2: TIR domain; PD 97.8 8.8E-06 1.9E-10 50.7 1.0 32 2-33 53-86 (102)
6 PF08937 DUF1863: MTH538 TIR-l 64.4 10 0.00022 24.6 3.2 32 1-32 73-106 (130)
7 cd03028 GRX_PICOT_like Glutare 62.7 4.2 9E-05 24.8 1.0 15 3-17 10-24 (90)
8 KOG2792 Putative cytochrome C 53.3 10 0.00022 28.8 1.9 24 15-38 154-187 (280)
9 PF12128 DUF3584: Protein of u 53.0 2.7 5.9E-05 37.0 -1.3 28 26-54 34-61 (1201)
10 KOG4302 Microtubule-associated 48.5 14 0.0003 31.2 2.1 64 21-85 137-202 (660)
11 TIGR00295 conserved hypothetic 39.4 53 0.0012 22.3 3.7 33 46-79 131-163 (164)
12 cd01223 PH_Vav Vav pleckstrin 39.0 29 0.00062 23.0 2.2 21 60-80 95-115 (116)
13 cd01241 PH_Akt Akt pleckstrin 38.8 32 0.0007 21.4 2.3 16 60-75 86-101 (102)
14 PF05060 MGAT2: N-acetylglucos 37.2 56 0.0012 25.6 3.8 38 2-41 62-112 (356)
15 cd01260 PH_CNK Connector enhan 34.3 38 0.00083 20.3 2.1 16 60-75 81-96 (96)
16 PF14709 DND1_DSRM: double str 34.1 69 0.0015 19.4 3.2 30 12-41 2-33 (80)
17 PF10579 Rapsyn_N: Rapsyn N-te 32.3 33 0.00071 21.4 1.5 20 61-81 22-41 (80)
18 cd01266 PH_Gab Gab (Grb2-assoc 31.7 49 0.0011 20.6 2.3 16 60-75 92-107 (108)
19 PF00603 Flu_PA: Influenza RNA 31.6 40 0.00087 28.5 2.3 20 17-36 427-447 (670)
20 smart00233 PH Pleckstrin homol 30.6 57 0.0012 18.1 2.4 16 60-75 85-100 (102)
21 PF00169 PH: PH domain; Inter 30.6 56 0.0012 18.6 2.4 16 60-75 87-102 (104)
22 KOG2540 Cytochrome oxidase ass 30.5 21 0.00045 26.7 0.5 27 15-41 202-229 (269)
23 cd01246 PH_oxysterol_bp Oxyste 29.9 52 0.0011 19.0 2.1 16 60-75 76-91 (91)
24 cd00900 PH-like Pleckstrin hom 28.1 56 0.0012 18.1 2.0 15 61-75 85-99 (99)
25 cd01235 PH_SETbf Set binding f 27.6 62 0.0013 19.3 2.2 16 60-75 85-100 (101)
26 cd01238 PH_Tec Tec pleckstrin 27.4 57 0.0012 20.4 2.1 16 60-75 91-106 (106)
27 PF11214 Med2: Mediator comple 27.4 22 0.00048 23.3 0.2 11 10-20 68-78 (105)
28 PF15335 CAAP1: Caspase activi 26.5 38 0.00082 20.3 1.0 7 14-20 46-52 (64)
29 PF01320 Colicin_Pyocin: Colic 26.1 52 0.0011 20.6 1.7 16 62-82 68-83 (85)
30 cd00821 PH Pleckstrin homology 26.1 64 0.0014 17.7 2.0 16 60-75 81-96 (96)
31 cd01251 PH_centaurin_alpha Cen 25.2 73 0.0016 19.8 2.3 16 60-75 84-99 (103)
32 cd01250 PH_centaurin Centaurin 25.2 65 0.0014 18.7 2.0 15 60-74 79-93 (94)
33 COG2719 SpoVR Uncharacterized 24.5 70 0.0015 26.2 2.5 48 12-59 7-76 (495)
34 cd01233 Unc104 Unc-104 pleckst 24.2 80 0.0017 19.4 2.3 16 60-75 82-97 (100)
35 cd01219 PH_FGD FGD (faciogenit 23.8 73 0.0016 19.7 2.1 16 60-75 83-98 (101)
36 PF03429 MSP1b: Major surface 23.6 53 0.0011 27.2 1.7 44 30-79 209-253 (726)
37 PF07756 DUF1612: Protein of u 22.6 75 0.0016 21.5 2.0 19 61-80 9-27 (128)
38 PF15409 PH_8: Pleckstrin homo 22.4 85 0.0018 19.7 2.1 15 61-75 74-88 (89)
39 PHA00407 phage lambda Rz1-like 22.3 61 0.0013 20.3 1.4 23 61-84 24-51 (84)
40 cd01252 PH_cytohesin Cytohesin 22.3 88 0.0019 19.9 2.3 16 60-75 97-112 (125)
41 PRK15183 Vi polysaccharide bio 22.0 1.3E+02 0.0028 20.1 3.0 26 49-74 99-124 (143)
42 PRK02797 4-alpha-L-fucosyltran 21.8 2E+02 0.0044 22.3 4.5 15 61-75 303-317 (322)
43 cd01244 PH_RasGAP_CG9209 RAS_G 21.6 83 0.0018 19.8 2.0 16 60-75 83-98 (98)
44 PF15043 CNRIP1: CB1 cannabino 21.2 44 0.00096 23.5 0.7 7 30-36 22-28 (161)
45 PF12006 DUF3500: Protein of u 20.7 65 0.0014 24.5 1.6 20 26-45 143-162 (313)
46 TIGR00365 monothiol glutaredox 20.2 55 0.0012 20.2 0.9 15 3-17 14-28 (97)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=1.5e-32 Score=230.52 Aligned_cols=84 Identities=30% Similarity=0.615 Sum_probs=78.4
Q ss_pred EEEEecCCCCCchhhHHHH-----hhc-CCCeEEEEeeecCCCcccccccchHHHHHHHHHhhccChHHHHHHHHHHHhh
Q 040703 2 LYTLPFRDSISLLSCIDTI-----CHD-PTQIVISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNALKEF 75 (88)
Q Consensus 2 ~~vifS~~Ya~S~wCLdEL-----~~~-~~~~ViPVFY~V~psdVr~q~g~fg~af~~~~~~~~~~~e~v~~Wr~AL~~v 75 (88)
-+||||+|||+|+|||||| |++ .+++|+||||+|||||||+|+|.||++|.+++++. +.+++++||+||++|
T Consensus 69 ~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~ 146 (1153)
T PLN03210 69 AVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDV 146 (1153)
T ss_pred EEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHH
Confidence 5899999999999999999 788 89999999999999999999999999999998764 578999999999999
Q ss_pred cCCceeeeecCCC
Q 040703 76 MPSLSGFHSLNIT 88 (88)
Q Consensus 76 ~~~l~G~~~~~~~ 88 (88)
++++|+++++++
T Consensus 147 -~~~~g~~~~~~~ 158 (1153)
T PLN03210 147 -ANILGYHSQNWP 158 (1153)
T ss_pred -hCcCceecCCCC
Confidence 999999998763
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=99.95 E-value=6.8e-29 Score=175.55 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=63.0
Q ss_pred CEEEEecCCCCCchhhHHHH--hhcCCCeEEEEeeecCCCccccc-ccchHHHHHHHHHhhccChHHHHHHHHHHHhhcC
Q 040703 1 VLYTLPFRDSISLLSCIDTI--CHDPTQIVISVFYQVDPPDMRNQ-NGNFGDSFLKLEERLKENTEKLQSWRNALKEFMP 77 (88)
Q Consensus 1 ~~~vifS~~Ya~S~wCLdEL--~~~~~~~ViPVFY~V~psdVr~q-~g~fg~af~~~~~~~~~~~e~v~~Wr~AL~~v~~ 77 (88)
+.+||||+|||+|.|||||| .++.+..||||||+|+|+|||+| .|. .+.+++++||+||++| +
T Consensus 83 i~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~v-a 148 (187)
T PLN03194 83 VGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEA-K 148 (187)
T ss_pred EEEEEECCCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHH-h
Confidence 36899999999999999999 66656789999999999999997 443 1468999999999999 9
Q ss_pred CceeeeecC
Q 040703 78 SLSGFHSLN 86 (88)
Q Consensus 78 ~l~G~~~~~ 86 (88)
+++|++++.
T Consensus 149 ~l~G~~~~~ 157 (187)
T PLN03194 149 YTVGLTFDS 157 (187)
T ss_pred ccccccCCC
Confidence 999998754
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.56 E-value=2e-16 Score=105.24 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=61.3
Q ss_pred EEEEecCCCCCchhhHHHH-----hhc-C--CCeEEEEeeecCCCccc-ccccchHHHHHHHHHhhccC--hHHHHHHHH
Q 040703 2 LYTLPFRDSISLLSCIDTI-----CHD-P--TQIVISVFYQVDPPDMR-NQNGNFGDSFLKLEERLKEN--TEKLQSWRN 70 (88)
Q Consensus 2 ~~vifS~~Ya~S~wCLdEL-----~~~-~--~~~ViPVFY~V~psdVr-~q~g~fg~af~~~~~~~~~~--~e~v~~Wr~ 70 (88)
+++|||++|++|.||++|| ++. . ..+|+||||+|.|++++ .|.+.|+..|..+....+++ .++...|++
T Consensus 58 ~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~ 137 (141)
T PF01582_consen 58 TIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKK 137 (141)
T ss_dssp EEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHH
T ss_pred eEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHH
Confidence 6899999999999999999 333 3 59999999999999999 79999999998887765543 578999999
Q ss_pred HHH
Q 040703 71 ALK 73 (88)
Q Consensus 71 AL~ 73 (88)
++.
T Consensus 138 l~~ 140 (141)
T PF01582_consen 138 LRY 140 (141)
T ss_dssp HHH
T ss_pred Hhc
Confidence 975
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.39 E-value=1.8e-12 Score=84.70 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=62.9
Q ss_pred CEEEEecCCCCCchhhHHHH-----hh-c-CCCeEEEEeeecCCCcccccccchHHHHHHHHHhhccChHHHHHHHHHHH
Q 040703 1 VLYTLPFRDSISLLSCIDTI-----CH-D-PTQIVISVFYQVDPPDMRNQNGNFGDSFLKLEERLKENTEKLQSWRNALK 73 (88)
Q Consensus 1 ~~~vifS~~Ya~S~wCLdEL-----~~-~-~~~~ViPVFY~V~psdVr~q~g~fg~af~~~~~~~~~~~e~v~~Wr~AL~ 73 (88)
.+++|+|++|..|.||..|+ ++ + .+..||||+|+..|+++..+.+.++..+..+..+..++..+ +.|++++.
T Consensus 57 ~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~ 135 (140)
T smart00255 57 IAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALY 135 (140)
T ss_pred EEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHH
Confidence 36899999999999999999 22 3 56899999999999999999999999998875555444443 78999998
Q ss_pred hhcCC
Q 040703 74 EFMPS 78 (88)
Q Consensus 74 ~v~~~ 78 (88)
.+ ++
T Consensus 136 ~l-~~ 139 (140)
T smart00255 136 AV-PS 139 (140)
T ss_pred Hh-cc
Confidence 87 53
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=97.77 E-value=8.8e-06 Score=50.72 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=27.8
Q ss_pred EEEEecCCCCCchhhHHHH-hhc-CCCeEEEEee
Q 040703 2 LYTLPFRDSISLLSCIDTI-CHD-PTQIVISVFY 33 (88)
Q Consensus 2 ~~vifS~~Ya~S~wCLdEL-~~~-~~~~ViPVFY 33 (88)
+++++|++|..|.||..|+ ..+ .+..|+||..
T Consensus 53 ~i~~~S~~~~~s~~~~~E~~~a~~~~~~iipv~~ 86 (102)
T PF13676_consen 53 VIVLLSPNYLKSPWCRFELGAAWKRGKPIIPVRL 86 (102)
T ss_dssp EEEEEEHHHHCTHHHHHHHHHHHCTSESEEEEEC
T ss_pred EEEEECcccccChHHHHHHHHHHHCCCEEEEEEE
Confidence 6889999999999999999 444 7779999983
No 6
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=64.37 E-value=10 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=17.6
Q ss_pred CEEEEecCCCCCchhhHHHH--hhcCCCeEEEEe
Q 040703 1 VLYTLPFRDSISLLSCIDTI--CHDPTQIVISVF 32 (88)
Q Consensus 1 ~~~vifS~~Ya~S~wCLdEL--~~~~~~~ViPVF 32 (88)
+++|+.|++=+.|.|+--|+ ..+.+..||-|-
T Consensus 73 ~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V~ 106 (130)
T PF08937_consen 73 VTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGVY 106 (130)
T ss_dssp EEEEE--TT----HHHHHHHHHHTTT---EEEEE
T ss_pred EEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEEE
Confidence 46888899999999999999 334666676664
No 7
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=62.74 E-value=4.2 Score=24.82 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=12.3
Q ss_pred EEEecCCCCCchhhH
Q 040703 3 YTLPFRDSISLLSCI 17 (88)
Q Consensus 3 ~vifS~~Ya~S~wCL 17 (88)
+||||+.+++..||-
T Consensus 10 vvvf~k~~~~~~~Cp 24 (90)
T cd03028 10 VVLFMKGTPEEPRCG 24 (90)
T ss_pred EEEEEcCCCCCCCCc
Confidence 689999888777775
No 8
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=53.25 E-value=10 Score=28.82 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=19.1
Q ss_pred hhHHHH---------hhc-CCCeEEEEeeecCCC
Q 040703 15 SCIDTI---------CHD-PTQIVISVFYQVDPP 38 (88)
Q Consensus 15 wCLdEL---------~~~-~~~~ViPVFY~V~ps 38 (88)
=|-||| ... .+..++|||=-|||.
T Consensus 154 ICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 154 ICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred cChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 399999 223 678888999999994
No 9
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.98 E-value=2.7 Score=36.99 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=18.9
Q ss_pred CeEEEEeeecCCCcccccccchHHHHHHH
Q 040703 26 QIVISVFYQVDPPDMRNQNGNFGDSFLKL 54 (88)
Q Consensus 26 ~~ViPVFY~V~psdVr~q~g~fg~af~~~ 54 (88)
+..||+||+-+|+.|-..+ .=-+.|.++
T Consensus 34 LRlip~FYGa~p~rlv~k~-~~rksF~~y 61 (1201)
T PF12128_consen 34 LRLIPFFYGADPSRLVPKT-SGRKSFDDY 61 (1201)
T ss_pred HHHHHHhcCCCccccCCcc-chhhhHHHH
Confidence 6789999999999974433 113444444
No 10
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.49 E-value=14 Score=31.25 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=49.7
Q ss_pred hhc-CCCeEEEEeeecCCCccccc-ccchHHHHHHHHHhhccChHHHHHHHHHHHhhcCCceeeeec
Q 040703 21 CHD-PTQIVISVFYQVDPPDMRNQ-NGNFGDSFLKLEERLKENTEKLQSWRNALKEFMPSLSGFHSL 85 (88)
Q Consensus 21 ~~~-~~~~ViPVFY~V~psdVr~q-~g~fg~af~~~~~~~~~~~e~v~~Wr~AL~~v~~~l~G~~~~ 85 (88)
|.+ +|...+|-|.-+|++|+-.. ...|...+..+++.+....++|..-+.++... +..-|.+..
T Consensus 137 ~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l-~~~Lg~~~~ 202 (660)
T KOG4302|consen 137 CEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSL-CSVLGLDFS 202 (660)
T ss_pred HHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcc
Confidence 777 78899999999999999743 45676677666666555678889999999988 877776654
No 11
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=39.35 E-value=53 Score=22.26 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhhccChHHHHHHHHHHHhhcCCc
Q 040703 46 NFGDSFLKLEERLKENTEKLQSWRNALKEFMPSL 79 (88)
Q Consensus 46 ~fg~af~~~~~~~~~~~e~v~~Wr~AL~~v~~~l 79 (88)
.-.+-+.+..++++.++....+|+.+..++ .++
T Consensus 131 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 163 (164)
T TIGR00295 131 TIDEVIKKLEERLGKNHPSIERARKLKEEL-ERL 163 (164)
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHH-Hhh
Confidence 345667777888888888999999999998 654
No 12
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.99 E-value=29 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.3
Q ss_pred cChHHHHHHHHHHHhhcCCce
Q 040703 60 ENTEKLQSWRNALKEFMPSLS 80 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v~~~l~ 80 (88)
.+++.-.+|++||..+|+|+.
T Consensus 95 Ktee~K~kWm~al~~a~sni~ 115 (116)
T cd01223 95 KTEHLRKKWLKALEMAMSNIR 115 (116)
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 467888999999999877764
No 13
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.77 E-value=32 Score=21.40 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=14.0
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+..+.|.+||..|
T Consensus 86 ~s~ee~~eWi~ai~~v 101 (102)
T cd01241 86 ESPEEREEWIHAIQTV 101 (102)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4678899999999887
No 14
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=37.23 E-value=56 Score=25.61 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=26.8
Q ss_pred EEEEecCCCCCchhhHHHHhhc-CCCeEEEEee------------ecCCCccc
Q 040703 2 LYTLPFRDSISLLSCIDTICHD-PTQIVISVFY------------QVDPPDMR 41 (88)
Q Consensus 2 ~~vifS~~Ya~S~wCLdEL~~~-~~~~ViPVFY------------~V~psdVr 41 (88)
.++|||.+|-+.. +++|... .=-.|+.||| +.||.|-.
T Consensus 62 ~llifSHd~~~~e--in~~v~~I~Fc~v~QIf~P~S~ql~p~~FPG~dP~DCp 112 (356)
T PF05060_consen 62 ALLIFSHDFYSEE--INDLVQSIDFCRVMQIFYPYSIQLYPNEFPGQDPNDCP 112 (356)
T ss_pred eEEEEeccCChHH--HHHHHHhCCcceeEEEecccchhhCCCCCCCCCccccc
Confidence 4789999998865 6777332 2235788887 67887765
No 15
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=34.34 E-value=38 Score=20.35 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.3
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+.+++|..||.++
T Consensus 81 ~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 81 ETLDDLSQWVNHLITA 96 (96)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5788899999999753
No 16
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=34.10 E-value=69 Score=19.35 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=18.8
Q ss_pred CchhhHHHHhhc--CCCeEEEEeeecCCCccc
Q 040703 12 SLLSCIDTICHD--PTQIVISVFYQVDPPDMR 41 (88)
Q Consensus 12 ~S~wCLdEL~~~--~~~~ViPVFY~V~psdVr 41 (88)
+..-.|+|||.+ -+..+.-+.-+..|++.+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~ 33 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRK 33 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccE
Confidence 345689999875 555555544456666633
No 17
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=32.33 E-value=33 Score=21.42 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHhhcCCcee
Q 040703 61 NTEKLQSWRNALKEFMPSLSG 81 (88)
Q Consensus 61 ~~e~v~~Wr~AL~~v~~~l~G 81 (88)
+.+-+.+|+.||... .+-.+
T Consensus 22 ~~~Al~~W~~aL~k~-~~~~~ 41 (80)
T PF10579_consen 22 TQQALQKWRKALEKI-TDRED 41 (80)
T ss_pred HHHHHHHHHHHHhhc-CChHH
Confidence 456799999999998 77543
No 18
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=31.70 E-value=49 Score=20.64 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=14.4
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+.++.|..|+.++
T Consensus 92 ~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 92 KNEEEMTLWVNCICKL 107 (108)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5789999999999887
No 19
>PF00603 Flu_PA: Influenza RNA-dependent RNA polymerase subunit PA; InterPro: IPR001009 RNA-directed RNA polymerase (RdRp) (2.7.7.48 from EC) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage [, ]. It catalyses synthesis of the RNA strand complementary to a given RNA template, but the precise molecular mechanism remains unclear. The postulated RNA replication process is a two-step mechanism. First, the initiation step of RNA synthesis begins at or near the 3' end of the RNA template by means of a primer-independent (de novo) mechanism. The de novo initiation consists in the addition of a nucleotide tri-phosphate (NTP) to the 3'-OH of the first initiating NTP. During the following so-called elongation phase, this nucleotidyl transfer reaction is repeated with subsequent NTPs to generate the complementary RNA product []. All the RNA-directed RNA polymerases, and many DNA-directed polymerases, employ a fold whose organisation has been likened to the shape of a right hand with three subdomains termed fingers, palm and thumb []. Only the catalytic palm subdomain, composed of a four-stranded antiparallel beta-sheet with two alpha-helices, is well conserved among all of these enzymes. In RdRp, the palm subdomain comprises three well conserved motifs (A, B and C). Motif A (D-x(4,5)-D) and motif C (GDD) are spatially juxtaposed; the Asp residues of these motifs are implied in the binding of Mg2+ and/or Mn2+. The Asn residue of motif B is involved in selection of ribonucleoside triphosphates over dNTPs and thus determines whether RNA is synthesised rather than DNA []. The domain organisation [] and the 3D structure of the catalytic centre of a wide range of RdPp's, even those with a low overall sequence homology, are conserved. The catalytic centre is formed by several motifs containing a number of conserved amino acid residues. There are 4 superfamilies of viruses that cover all RNA containing viruses with no DNA stage: Viruses containing positive-strand RNA or double-strand RNA, except retroviruses and Birnaviridae: viral RNA-directed RNA polymerases including all positive-strand RNA viruses with no DNA stage, double-strand RNA viruses, and the Cystoviridae, Reoviridae, Hypoviridae, Partitiviridae, Totiviridae families. Mononegavirales (negative-strand RNA viruses with non-segmented genomes). Negative-strand RNA viruses with segmented genomes, i.e. Orthomyxoviruses (including influenza A, B, and C viruses, Thogotoviruses, and the infectious salmon anemia virus), Arenaviruses, Bunyaviruses, Hantaviruses, Nairoviruses, Phleboviruses, Tenuiviruses and Tospoviruses. Birnaviridae family of dsRNA viruses. The RNA-directed RNA polymerases in the first of the above superfamilies can be divided into the following three subgroups: All positive-strand RNA eukaryotic viruses with no DNA stage. All RNA-containing bacteriophages -there are two families of RNA-containing bacteriophages: Leviviridae (positive ssRNA phages) and Cystoviridae (dsRNA phages). Reoviridae family of dsRNA viruses. The pattern describes the P2 subunit of Influenza RNA polymerase 2.7.7.48 from EC,an enzyme which is composed of three subunits: P1 (or PB1), P2 (or PA), and P3 (or PB2). The P2 subunit in addition to the P1 subunit is required for viral RNA synthesis in replication of the Influenza virus genome [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3CM8_A 3L3H_C 3HW5_A 3HW4_C 3EBJ_D 3HW3_D 3HW6_D 1YN7_C 1YN6_C 2ZNL_A ....
Probab=31.58 E-value=40 Score=28.54 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=14.8
Q ss_pred HHHHhhc-CCCeEEEEeeecC
Q 040703 17 IDTICHD-PTQIVISVFYQVD 36 (88)
Q Consensus 17 LdEL~~~-~~~~ViPVFY~V~ 36 (88)
|.|+|.. ....|+||.++..
T Consensus 427 lne~~~~~~ri~viPIitR~~ 447 (670)
T PF00603_consen 427 LNESHTDRSRIKVIPIITRDK 447 (670)
T ss_dssp HHHHHCTSSSEEEEEEEEEEE
T ss_pred hhhhhhChhhceEeeeEEeec
Confidence 4455666 7789999998755
No 20
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=30.63 E-value=57 Score=18.06 Aligned_cols=16 Identities=31% Similarity=0.653 Sum_probs=13.7
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
.+.+..++|..||..+
T Consensus 85 ~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 85 ESEEEREEWVDALRKA 100 (102)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4678899999999887
No 21
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=30.62 E-value=56 Score=18.62 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=14.0
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+....|.+||..+
T Consensus 87 ~s~~~~~~W~~~i~~~ 102 (104)
T PF00169_consen 87 ESEEERKRWIQAIQKA 102 (104)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4788899999999887
No 22
>KOG2540 consensus Cytochrome oxidase assembly factor COX11 [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=21 Score=26.69 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=20.7
Q ss_pred hhHHHHhhc-CCCeEEEEeeecCCCccc
Q 040703 15 SCIDTICHD-PTQIVISVFYQVDPPDMR 41 (88)
Q Consensus 15 wCLdEL~~~-~~~~ViPVFY~V~psdVr 41 (88)
.|.+|-... .-++=+|||+-+||.-..
T Consensus 202 FCFEEQ~L~pgE~vDmPVFFyIDPefa~ 229 (269)
T KOG2540|consen 202 FCFEEQKLNPGEQVDMPVFFYIDPEFAT 229 (269)
T ss_pred EeehhhccCCCcccCcceEEEeCccccc
Confidence 577776555 668899999999997443
No 23
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.93 E-value=52 Score=18.98 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.1
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+...+|..||..+
T Consensus 76 ~s~~e~~~Wi~al~~a 91 (91)
T cd01246 76 NSEEERQRWVDALELA 91 (91)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4688899999999753
No 24
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=28.11 E-value=56 Score=18.13 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHhh
Q 040703 61 NTEKLQSWRNALKEF 75 (88)
Q Consensus 61 ~~e~v~~Wr~AL~~v 75 (88)
+.+..+.|..||.++
T Consensus 85 ~~~~~~~W~~al~~~ 99 (99)
T cd00900 85 SEEEAQEWVEALQQA 99 (99)
T ss_pred CHHHHHHHHHHHhcC
Confidence 677899999999763
No 25
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=27.63 E-value=62 Score=19.35 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=13.7
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+..+.|.+||.++
T Consensus 85 ~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 85 ENINEAQRWKEKIQQC 100 (101)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5788899999999875
No 26
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=27.44 E-value=57 Score=20.44 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.5
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+..+.|.+||.+|
T Consensus 91 ~s~~er~~WI~ai~~~ 106 (106)
T cd01238 91 PTEELRKRWIKALKQV 106 (106)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4678899999999875
No 27
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=27.39 E-value=22 Score=23.29 Aligned_cols=11 Identities=18% Similarity=0.014 Sum_probs=9.5
Q ss_pred CCCchhhHHHH
Q 040703 10 SISLLSCIDTI 20 (88)
Q Consensus 10 Ya~S~wCLdEL 20 (88)
|..|.||++++
T Consensus 68 l~~sk~~v~~m 78 (105)
T PF11214_consen 68 LNDSKWYVDTM 78 (105)
T ss_pred HHHHHHHHHHH
Confidence 56789999998
No 28
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=26.48 E-value=38 Score=20.27 Aligned_cols=7 Identities=14% Similarity=0.705 Sum_probs=6.1
Q ss_pred hhhHHHH
Q 040703 14 LSCIDTI 20 (88)
Q Consensus 14 ~wCLdEL 20 (88)
.||+|||
T Consensus 46 ~lCl~eL 52 (64)
T PF15335_consen 46 ELCLEEL 52 (64)
T ss_pred HHHHHHH
Confidence 5899999
No 29
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=26.15 E-value=52 Score=20.64 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHhhcCCceee
Q 040703 62 TEKLQSWRNALKEFMPSLSGF 82 (88)
Q Consensus 62 ~e~v~~Wr~AL~~v~~~l~G~ 82 (88)
.+.|.+||+| -.++||
T Consensus 68 v~~vKeWRa~-----nG~pgF 83 (85)
T PF01320_consen 68 VKEVKEWRAS-----NGKPGF 83 (85)
T ss_dssp HHHHHHHHHH-----TT---S
T ss_pred HHHHHHHHHH-----cCCCcc
Confidence 4568999998 666765
No 30
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=26.13 E-value=64 Score=17.68 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=12.8
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+...+|.+||..+
T Consensus 81 ~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 81 ESEEEREEWIEALQSA 96 (96)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3678899999999753
No 31
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=25.22 E-value=73 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+....|.+||..|
T Consensus 84 ~s~~e~~~Wi~ai~~v 99 (103)
T cd01251 84 ETEQDRREWIAAFQNV 99 (103)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5788899999999998
No 32
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.16 E-value=65 Score=18.65 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=12.6
Q ss_pred cChHHHHHHHHHHHh
Q 040703 60 ENTEKLQSWRNALKE 74 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~ 74 (88)
++.+..++|..||..
T Consensus 79 ~s~~~~~~Wi~al~~ 93 (94)
T cd01250 79 DSEEERDDWISAIQE 93 (94)
T ss_pred CCHHHHHHHHHHHhc
Confidence 478889999999964
No 33
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=24.51 E-value=70 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=37.7
Q ss_pred CchhhHHHH---------hhc-CCCeEEEEeeecCCCc------------ccccccchHHHHHHHHHhhc
Q 040703 12 SLLSCIDTI---------CHD-PTQIVISVFYQVDPPD------------MRNQNGNFGDSFLKLEERLK 59 (88)
Q Consensus 12 ~S~wCLdEL---------~~~-~~~~ViPVFY~V~psd------------Vr~q~g~fg~af~~~~~~~~ 59 (88)
.|.|-..+| ..+ .|+-.-|+=|.|=|++ .|.+--+||+.|.+.+..++
T Consensus 7 ~~d~~~~~L~~~~~eI~~ia~~~gLD~Yp~q~Evi~~eqM~da~ss~GMP~rY~HWSfGKkf~k~k~~Y~ 76 (495)
T COG2719 7 GSDWTFKLLDRYLEEIERIAKEYGLDTYPVQYEVITSEQMMDAYSSVGMPTRYPHWSFGKKFEKTKQLYK 76 (495)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCceEEEecHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHHh
Confidence 577888887 334 7899999999999987 44455699999999877664
No 34
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=24.17 E-value=80 Score=19.41 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=13.6
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+..+.|..||...
T Consensus 82 ~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 82 LSDKEMIDWLYALNPL 97 (100)
T ss_pred CCHHHHHHHHHHhhhh
Confidence 4688899999999866
No 35
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.81 E-value=73 Score=19.69 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=14.1
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+...+|.+||..+
T Consensus 83 ~s~eEk~~W~~ai~~~ 98 (101)
T cd01219 83 RTQKEKNDWVQAIFSI 98 (101)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4678899999999988
No 36
>PF03429 MSP1b: Major surface protein 1B; InterPro: IPR005091 The major surface protein (MSP1) of the cattle pathogen Anaplasma is a heterodimer comprised of MSP1a and MSP1b. This family is the MSP1b chain. The MSP1 proteins are putative adhesins for bovine erythrocytes.
Probab=23.59 E-value=53 Score=27.22 Aligned_cols=44 Identities=27% Similarity=0.518 Sum_probs=31.4
Q ss_pred EEeeecCCCcccccccch-HHHHHHHHHhhccChHHHHHHHHHHHhhcCCc
Q 040703 30 SVFYQVDPPDMRNQNGNF-GDSFLKLEERLKENTEKLQSWRNALKEFMPSL 79 (88)
Q Consensus 30 PVFY~V~psdVr~q~g~f-g~af~~~~~~~~~~~e~v~~Wr~AL~~v~~~l 79 (88)
-+-|+|+ .+.+..|.| |+.+.+..++. .+--++|-+||.+| -++
T Consensus 209 easyGvs--yane~MGK~AGKGLEKCknKL---~~A~~KW~~A~~Ei-eaL 253 (726)
T PF03429_consen 209 EASYGVS--YANETMGKYAGKGLEKCKNKL---EAACQKWHDALQEI-EAL 253 (726)
T ss_pred Hhhhhhh--hhhchhhhhhcccHHHHHHHH---HHHHHHHHHHHHHH-HHH
Confidence 3445554 455567877 78888887776 46679999999998 543
No 37
>PF07756 DUF1612: Protein of unknown function (DUF1612); InterPro: IPR011670 This family includes sequences of largely unknown function but which share a number of features in common. They are expressed by bacterial species, and in many cases these bacteria are known to associate symbiotically with plants. Moreover, the majority are coded for by plasmids, which in many cases are known to confer on the organism the ability to interact symbiotically with leguminous plants. An example of such a plasmid is NGR234, which encodes Y4CF, a protein of unknown function that is a member of this family []. Other members of this family are expressed by organisms with a documented genomic similarity to plant symbionts [].
Probab=22.58 E-value=75 Score=21.52 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHhhcCCce
Q 040703 61 NTEKLQSWRNALKEFMPSLS 80 (88)
Q Consensus 61 ~~e~v~~Wr~AL~~v~~~l~ 80 (88)
..+++..||..|.++ .+++
T Consensus 9 E~~RL~eWr~vl~~~-~~LP 27 (128)
T PF07756_consen 9 EDERLDEWRAVLREA-EALP 27 (128)
T ss_pred hHHHHHHHHHHHHHH-hhCC
Confidence 467899999999999 8776
No 38
>PF15409 PH_8: Pleckstrin homology domain
Probab=22.40 E-value=85 Score=19.70 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHhh
Q 040703 61 NTEKLQSWRNALKEF 75 (88)
Q Consensus 61 ~~e~v~~Wr~AL~~v 75 (88)
+.+..+.|..||..+
T Consensus 74 s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 74 SQEDFQRWVSALQKA 88 (89)
T ss_pred CHHHHHHHHHHHHhc
Confidence 678899999999875
No 39
>PHA00407 phage lambda Rz1-like protein
Probab=22.30 E-value=61 Score=20.28 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHH-----hhcCCceeeee
Q 040703 61 NTEKLQSWRNALK-----EFMPSLSGFHS 84 (88)
Q Consensus 61 ~~e~v~~Wr~AL~-----~v~~~l~G~~~ 84 (88)
...+.++||.||. -| +.++|..+
T Consensus 24 tkktl~rwkaaLIGlllicv-~tISGCaS 51 (84)
T PHA00407 24 TKKTLRRWKAALIGLLLICV-ATISGCAS 51 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHH-HHHhhhhh
Confidence 4677999999974 45 66677544
No 40
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.26 E-value=88 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+..+.|.+||..+
T Consensus 97 ~s~~e~~~Wi~al~~~ 112 (125)
T cd01252 97 ANDEEMDEWIKSIKAS 112 (125)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5788899999999988
No 41
>PRK15183 Vi polysaccharide biosynthesis protein TviA; Provisional
Probab=21.96 E-value=1.3e+02 Score=20.14 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=20.0
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHh
Q 040703 49 DSFLKLEERLKENTEKLQSWRNALKE 74 (88)
Q Consensus 49 ~af~~~~~~~~~~~e~v~~Wr~AL~~ 74 (88)
..+.++++||-+.+..+-+||..|+-
T Consensus 99 sgmeelqdrfmns~st~yrwrke~a~ 124 (143)
T PRK15183 99 SGMEELQDRFMNSSSTMYRWRKELAV 124 (143)
T ss_pred ccHHHHHHHHccChHHHHHHHHHHHH
Confidence 34567778887788899999987753
No 42
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=21.85 E-value=2e+02 Score=22.33 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHhh
Q 040703 61 NTEKLQSWRNALKEF 75 (88)
Q Consensus 61 ~~e~v~~Wr~AL~~v 75 (88)
++.-++.|++||..+
T Consensus 303 ~pn~~~~W~~~l~~~ 317 (322)
T PRK02797 303 SPNYLQGWRNALAIA 317 (322)
T ss_pred CHhHHHHHHHHHHHh
Confidence 355689999999987
No 43
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.64 E-value=83 Score=19.79 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.2
Q ss_pred cChHHHHHHHHHHHhh
Q 040703 60 ENTEKLQSWRNALKEF 75 (88)
Q Consensus 60 ~~~e~v~~Wr~AL~~v 75 (88)
++.+..+.|..||.+|
T Consensus 83 ~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 83 EAPVEATDWLNALEKQ 98 (98)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4678889999999875
No 44
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=21.15 E-value=44 Score=23.46 Aligned_cols=7 Identities=57% Similarity=1.213 Sum_probs=6.5
Q ss_pred EEeeecC
Q 040703 30 SVFYQVD 36 (88)
Q Consensus 30 PVFY~V~ 36 (88)
||||+||
T Consensus 22 PVffKvD 28 (161)
T PF15043_consen 22 PVFFKVD 28 (161)
T ss_pred cEEEEec
Confidence 8999998
No 45
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=20.71 E-value=65 Score=24.50 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=17.2
Q ss_pred CeEEEEeeecCCCccccccc
Q 040703 26 QIVISVFYQVDPPDMRNQNG 45 (88)
Q Consensus 26 ~~ViPVFY~V~psdVr~q~g 45 (88)
..+-|+||+.+|..+....|
T Consensus 143 v~~tP~F~Ga~P~~~~~~~G 162 (313)
T PF12006_consen 143 VSITPTFFGAEPAEVDEYKG 162 (313)
T ss_pred EEECceeeCCCCCcccccCC
Confidence 46779999999999987766
No 46
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.21 E-value=55 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=10.3
Q ss_pred EEEecCCCCCchhhH
Q 040703 3 YTLPFRDSISLLSCI 17 (88)
Q Consensus 3 ~vifS~~Ya~S~wCL 17 (88)
+||||+.+.+-+||-
T Consensus 14 Vvvf~kg~~~~~~Cp 28 (97)
T TIGR00365 14 VVLYMKGTPQFPQCG 28 (97)
T ss_pred EEEEEccCCCCCCCc
Confidence 688998775555553
Done!