Query 040710
Match_columns 202
No_of_seqs 200 out of 864
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 9.6E-46 2.1E-50 314.6 21.7 191 4-196 27-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 1.6E-44 3.4E-49 306.6 16.4 187 6-194 29-236 (236)
3 cd01951 lectin_L-type legume l 100.0 2.1E-34 4.6E-39 241.8 19.4 178 4-195 29-223 (223)
4 cd07308 lectin_leg-like legume 99.6 3.8E-14 8.2E-19 118.9 17.9 172 4-194 33-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 99.1 1.1E-08 2.3E-13 86.9 17.4 177 3-195 34-223 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 99.0 8.1E-08 1.8E-12 82.7 18.6 177 3-199 32-226 (248)
7 cd06903 lectin_EMP46_EMP47 EMP 98.3 7E-05 1.5E-09 63.3 16.2 166 3-194 33-212 (215)
8 PF03388 Lectin_leg-like: Legu 98.1 0.00017 3.8E-09 61.2 14.9 170 3-192 34-224 (229)
9 KOG3838 Mannose lectin ERGIC-5 96.0 0.076 1.7E-06 48.7 10.4 107 82-192 136-251 (497)
10 cd06900 lectin_VcfQ VcfQ bacte 96.0 0.82 1.8E-05 39.6 16.0 183 7-194 35-254 (255)
11 KOG3839 Lectin VIP36, involved 95.9 0.098 2.1E-06 46.9 10.3 170 3-191 84-270 (351)
12 KOG3514 Neurexin III-alpha [Si 27.4 4.1E+02 0.0089 28.4 8.9 25 120-144 914-939 (1591)
13 KOG3516 Neurexin IV [Signal tr 25.3 4.6E+02 0.0099 28.1 8.9 58 78-145 832-889 (1306)
14 PHA02104 hypothetical protein 20.5 83 0.0018 22.3 2.0 17 123-139 55-71 (89)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=9.6e-46 Score=314.60 Aligned_cols=191 Identities=32% Similarity=0.481 Sum_probs=161.2
Q ss_pred ceEEEEEEe--ceEEeeeeecCeEeccc-----cceeeEEe-eeeeeeCC---ccee-eeecc--CCCCCCCCCeeeeec
Q 040710 4 TQILLVLEM--GWRLFLHLIACPRQLSV-----LAHFSESW-INILKISD---RKRL-VSISS--IRPLLYVANSLRVIN 69 (202)
Q Consensus 4 ~~~~~~~~~--g~~~~~~~y~~p~~l~~-----~asFsT~F-F~i~~~~~---~~~~-~~~~~--~~P~~~~gg~LGL~~ 69 (202)
..|-|+... ..++++++|++|++||+ ++||+|+| |.|.+... ..++ |.+.. ..|.+..|++|||.+
T Consensus 27 ~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~gdGlAF~i~~~~~~~~~~~G~~lG~~~ 106 (236)
T cd06899 27 GALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLGGDGLAFFLAPTDSLPPASSGGYLGLFN 106 (236)
T ss_pred CeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCCCCeEEEEEecCCCCCCCCCcceeeeec
Confidence 456777776 77899999999999997 79999999 99975431 2233 33222 233356789999998
Q ss_pred cccccCCCCCcEEEEEEeCCCC-CC-CCCCCeEEEecCCCcCceeeeecCCCccccCCCceEEEEEEEcCCccEEEEEEe
Q 040710 70 YMLEIVGTDMHQLAVELDTFKN-DF-DVDGNHVAIDTTSISQPVAVESLNSTGVDLKSGKNITVIIQYNGSQNLIYVNVR 147 (202)
Q Consensus 70 ~~~~~~~~~n~~vAVEFDT~~n-~~-Dp~~nHVgIdvns~~~S~~~~~~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~ 147 (202)
....+ .+.++.|||||||++| ++ ||++||||||+|++. |..+..+......|.+|+.++|||+||+.+++|+|+|.
T Consensus 107 ~~~~~-~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~-S~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~ 184 (236)
T cd06899 107 SSNNG-NSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLV-SVKAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLA 184 (236)
T ss_pred CCCCC-CcccceEEEEeecccCcccCCCCCCeEEEEcCCcc-cceeeccccccccccCCCeEEEEEEEcCCCCEEEEEEE
Confidence 76554 2678999999999999 67 999999999999998 88887776445668999999999999999999999999
Q ss_pred eC--CCCCceeeeeeeccCCCCCCeEEEEEeeecCCCccceEEEEEEEeec
Q 040710 148 DT--DHPPKNVIKQPINLSDIVPSSVYVGFTAATGALAESHQLLEWSLTSQ 196 (202)
Q Consensus 148 ~~--~kp~~plLs~~vdLs~~l~~~v~VGFSAsTG~~~~~h~I~sWsF~s~ 196 (202)
.. .||..|+|++++||+.+|+++|||||||+||...|.|+|++|+|++.
T Consensus 185 ~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 185 YSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred eCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEcC
Confidence 85 37899999999999999999999999999999999999999999985
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=1.6e-44 Score=306.60 Aligned_cols=187 Identities=31% Similarity=0.424 Sum_probs=154.8
Q ss_pred EEEEEEec-eEEeeeeecCeEeccc-----cceeeEEe-eeeeee---CC--ccee-eee--ccCCCCCCCCCeeeeecc
Q 040710 6 ILLVLEMG-WRLFLHLIACPRQLSV-----LAHFSESW-INILKI---SD--RKRL-VSI--SSIRPLLYVANSLRVINY 70 (202)
Q Consensus 6 ~~~~~~~g-~~~~~~~y~~p~~l~~-----~asFsT~F-F~i~~~---~~--~~~~-~~~--~~~~P~~~~gg~LGL~~~ 70 (202)
+-|+.... .++++++|++|++||+ +++|+|+| |.|... .. ..++ |.+ ...+|..+.|++|||.+.
T Consensus 29 l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~~~~~dGlAFvi~~~~~~~~~~~g~~lG~~~~ 108 (236)
T PF00139_consen 29 LQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSSNNGGDGLAFVIQPDPNLPGGSSGGYLGLFNS 108 (236)
T ss_dssp EESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSSSS-BEEEEEEEEETTSSTTTSSGGGTTTSSS
T ss_pred EEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCCccCCCceEEEEecCcccccCCCCCccCcccc
Confidence 45666676 8999999999999998 69999999 999543 11 2222 222 225566678899999887
Q ss_pred ccccCCCCCcEEEEEEeCCCC-CC-CCCCCeEEEecCCCcCceeeeecC---CCccccCCCceEEEEEEEcCCccEEEEE
Q 040710 71 MLEIVGTDMHQLAVELDTFKN-DF-DVDGNHVAIDTTSISQPVAVESLN---STGVDLKSGKNITVIIQYNGSQNLIYVN 145 (202)
Q Consensus 71 ~~~~~~~~n~~vAVEFDT~~n-~~-Dp~~nHVgIdvns~~~S~~~~~~~---~~~~~l~~G~~~~vwI~Yd~~~~~L~V~ 145 (202)
...+. +.+++|||||||++| ++ ||++|||||++|++. +..+.+++ .....|.+|+.++|||+||+.+++|+|+
T Consensus 109 ~~~~~-~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~-s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~ 186 (236)
T PF00139_consen 109 STDGN-GINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVV-SNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVY 186 (236)
T ss_dssp SSTTG-GGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSS-ESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEE
T ss_pred ccCCC-ccCcEEEEEEeeeecccccccCCCEEEEECCCCc-ccccccccccccccccccCCcEEEEEEEEcCCccEEEEE
Confidence 66542 578899999999999 77 999999999999998 87775543 2357889999999999999999999999
Q ss_pred EeeC-CCCCceeeeeeeccCCCCCCeEEEEEeeecCCCccceEEEEEEEe
Q 040710 146 VRDT-DHPPKNVIKQPINLSDIVPSSVYVGFTAATGALAESHQLLEWSLT 194 (202)
Q Consensus 146 l~~~-~kp~~plLs~~vdLs~~l~~~v~VGFSAsTG~~~~~h~I~sWsF~ 194 (202)
|... .||..|+|++.+||+.+|+++||||||||||...|.|.|++|+|+
T Consensus 187 l~~~~~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 187 LDDNSSKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp EEETTTTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred EecccCCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEEEEeC
Confidence 9996 689999999999999999999999999999999999999999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=2.1e-34 Score=241.80 Aligned_cols=178 Identities=28% Similarity=0.382 Sum_probs=139.2
Q ss_pred ceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeC--Cccee-eeeccCCC--CCCCC--CeeeeeccccccC
Q 040710 4 TQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKIS--DRKRL-VSISSIRP--LLYVA--NSLRVINYMLEIV 75 (202)
Q Consensus 4 ~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~--~~~~~-~~~~~~~P--~~~~g--g~LGL~~~~~~~~ 75 (202)
.-+.|+....+++++++|++|+++| ++|+|+| |.|.... ...+. |.+....+ ....| +.||.
T Consensus 29 ~~l~Lt~~~~~~~G~~~~~~~i~~~--~~F~~~F~f~i~~~~~~~gdG~aF~l~~~~~~~~~~~g~~~~lG~-------- 98 (223)
T cd01951 29 GVLRLTPDTGNQAGSAWYKTPIDLS--KDFTTTFKFYLGTKGTNGADGIAFVLQNDPAGALGGGGGGGGLGY-------- 98 (223)
T ss_pred CEEEECCCCCCcEEEEEECCcEecc--CCEEEEEEEEEeCCCCCCCCcEEEEEecCCCCccccCCCCCccCc--------
Confidence 4567887888999999999999998 6999999 9996542 22222 33332222 22223 45664
Q ss_pred CCCCcEEEEEEeCCCC-CC-CCCCCeEEEecCCCcCce-------eeeecCCCccccCCCceEEEEEEEcCCccEEEEEE
Q 040710 76 GTDMHQLAVELDTFKN-DF-DVDGNHVAIDTTSISQPV-------AVESLNSTGVDLKSGKNITVIIQYNGSQNLIYVNV 146 (202)
Q Consensus 76 ~~~n~~vAVEFDT~~n-~~-Dp~~nHVgIdvns~~~S~-------~~~~~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l 146 (202)
...++.+||||||++| ++ ||+.+||||++|+.. +. ....++ ....+|+.++|||+|++.+++|+|+|
T Consensus 99 ~~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~-~~~~~~~~~~~~~~~---~~~~~g~~~~v~I~Y~~~~~~L~v~l 174 (223)
T cd01951 99 GGIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNG-NNTALATSLGSASLP---NGTGLGNEHTVRITYDPTTNTLTVYL 174 (223)
T ss_pred cccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCC-CCcccccccceeeCC---CccCCCCEEEEEEEEeCCCCEEEEEE
Confidence 2467899999999999 65 999999999999986 43 122221 22223999999999999999999999
Q ss_pred eeCCCCCceeeeeeeccCCCCCCeEEEEEeeecCCCccceEEEEEEEee
Q 040710 147 RDTDHPPKNVIKQPINLSDIVPSSVYVGFTAATGALAESHQLLEWSLTS 195 (202)
Q Consensus 147 ~~~~kp~~plLs~~vdLs~~l~~~v~VGFSAsTG~~~~~h~I~sWsF~s 195 (202)
.....|..|+|+.++||+..++++||||||||||...+.|.|++|+|+.
T Consensus 175 ~~~~~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 175 DNGSTLTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred CCCCccccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 9755577899999999999999999999999999999999999999974
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.62 E-value=3.8e-14 Score=118.89 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=107.6
Q ss_pred ceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCC--ccee-eeeccCCCCCCCCCeeeeeccccccCCCCC
Q 040710 4 TQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISD--RKRL-VSISSIRPLLYVANSLRVINYMLEIVGTDM 79 (202)
Q Consensus 4 ~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~--~~~~-~~~~~~~P~~~~gg~LGL~~~~~~~~~~~n 79 (202)
..|.|+.....+.|.++|..|+++. +|+|.| |.|..... ..+. |-+.... ...|..+|- ....
T Consensus 33 ~~i~LT~~~~~~~G~~~~~~pi~~~---~F~~~f~F~i~~~~~~~gdG~af~~~~~~--~~~g~~~G~--------~~~~ 99 (218)
T cd07308 33 NYIRLTPDVPSQSGSLWSRVPIPAK---DFEIEVEFSIHGGSGLGGDGFAFWYTEEP--GSDGPLFGG--------PDKF 99 (218)
T ss_pred CEEEeCCCCCCCEeEEEeCCCccCC---CEEEEEEEEEeCCCCCCCCEEEEEEECCC--CCCCccccc--------CCCC
Confidence 4678887777788899999999994 999999 99965421 2222 2222211 123433432 1245
Q ss_pred cEEEEEEeCCCCCCCCCCCeEEEecC-CCcCcee------eeecCCCccccC-CCceEEEEEEEcCCccEEEEEEeeCCC
Q 040710 80 HQLAVELDTFKNDFDVDGNHVAIDTT-SISQPVA------VESLNSTGVDLK-SGKNITVIIQYNGSQNLIYVNVRDTDH 151 (202)
Q Consensus 80 ~~vAVEFDT~~n~~Dp~~nHVgIdvn-s~~~S~~------~~~~~~~~~~l~-~G~~~~vwI~Yd~~~~~L~V~l~~~~k 151 (202)
+-+||||||++|. +-...+|.+.+| +.. +.. ....+.-.+... .+++++++|.|+ .+.|.|.+....
T Consensus 100 ~Glai~fdt~~n~-~~~~p~i~~~~Ndg~~-~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~~- 174 (218)
T cd07308 100 KGLAIFFDTYDND-GKGFPSISVFLNDGTK-SYDYETDGEKLELASCSLKFRNSNAPTTLRISYL--NNTLKVDITYSE- 174 (218)
T ss_pred CEEEEEEEcCCCC-CCCCCeEEEEEeCCCc-eecccCCCccccccceeEecccCCCCeEEEEEEE--CCEEEEEEeCCC-
Confidence 6799999999984 223345655544 221 211 011111011222 267999999999 678889887531
Q ss_pred CCceeeeeeeccCCCCCCeEEEEEeeecCCCccceEEEEEEEe
Q 040710 152 PPKNVIKQPINLSDIVPSSVYVGFTAATGALAESHQLLEWSLT 194 (202)
Q Consensus 152 p~~plLs~~vdLs~~l~~~v~VGFSAsTG~~~~~h~I~sWsF~ 194 (202)
+....+...++.- .+++.+|+||||+||...+.|+|++|.+.
T Consensus 175 ~~~~~~c~~~~~~-~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 175 GNNWKECFTVEDV-ILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred CCCccEEEEcCCc-ccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 2222233333221 46789999999999999999999999864
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.09 E-value=1.1e-08 Score=86.93 Aligned_cols=177 Identities=16% Similarity=0.201 Sum_probs=104.9
Q ss_pred cceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCCc--cee-eeeccCCCCCCCCCeeeeeccccccCCCC
Q 040710 3 STQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISDR--KRL-VSISSIRPLLYVANSLRVINYMLEIVGTD 78 (202)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~~--~~~-~~~~~~~P~~~~gg~LGL~~~~~~~~~~~ 78 (202)
.++|.||-....+.+..+-..|++.- +|+..| |.|...... .+. +-+....+ ..|..+|-. ..
T Consensus 34 ~~~IrLTp~~~~~~G~iw~~~~~~~~---~w~ie~~Fri~g~~~~~gdG~a~W~t~~~~--~~G~~~G~~--------~~ 100 (225)
T cd06902 34 LEQVRLTPSLRSKKGSVWTKNPFSFE---NWEVEVTFRVTGRGRIGADGLAIWYTKERG--EEGPVFGSS--------DK 100 (225)
T ss_pred CCEEEECCCCCCCEEEEeeCCCcCCC---CEEEEEEEEEecCCCCCCCEEEEEEECCCC--CCCCccCCC--------Cc
Confidence 46788888777777777888888855 899999 998644321 122 22222221 123323321 12
Q ss_pred CcEEEEEEeCCCCCCCCCCCeEEEecC-CCcCceee------eecCCCcccc-CCCceEEEEEEEcCCccEEEEEEeeCC
Q 040710 79 MHQLAVELDTFKNDFDVDGNHVAIDTT-SISQPVAV------ESLNSTGVDL-KSGKNITVIIQYNGSQNLIYVNVRDTD 150 (202)
Q Consensus 79 n~~vAVEFDT~~n~~Dp~~nHVgIdvn-s~~~S~~~------~~~~~~~~~l-~~G~~~~vwI~Yd~~~~~L~V~l~~~~ 150 (202)
-.=+||.|||+.|.-..+...|.+-.| +.. .... ..++.-.... +...+.+++|.|... +|.|.++...
T Consensus 101 f~Gl~I~~Dt~~n~~~~~~p~i~~~~NDGt~-~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~~~--~l~V~~d~~~ 177 (225)
T cd06902 101 WNGVGIFFDSFDNDGKKNNPAILVVGNDGTK-SYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYYQN--VLTVSINNGF 177 (225)
T ss_pred ccEEEEEEECCCCCCCCCCcEEEEEECCCCe-eccccCCCcccccceEEEeccCCCCCeEEEEEEECC--eEEEEEeCCc
Confidence 335899999998722222346655543 222 1111 0111001122 234578999999994 6888887533
Q ss_pred CCCceeeeeeeccCC-CCCCeEEEEEeeecCCCccceEEEEEEEee
Q 040710 151 HPPKNVIKQPINLSD-IVPSSVYVGFTAATGALAESHQLLEWSLTS 195 (202)
Q Consensus 151 kp~~plLs~~vdLs~-~l~~~v~VGFSAsTG~~~~~h~I~sWsF~s 195 (202)
++.......-+++.+ .||+..|+||||+||...+.|+|++|.+.+
T Consensus 178 ~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 178 TPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred CCCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 333222222233343 467889999999999999999999999864
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=98.98 E-value=8.1e-08 Score=82.73 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=101.1
Q ss_pred cceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCC---ccee-eeeccCCCCCCCCCeeeeeccccccCCC
Q 040710 3 STQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISD---RKRL-VSISSIRPLLYVANSLRVINYMLEIVGT 77 (202)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~---~~~~-~~~~~~~P~~~~gg~LGL~~~~~~~~~~ 77 (202)
.+.|.|+...--+.|.++|..|+++- +|++.| |.|..... +.+. +-+.... ...|..+|-. .
T Consensus 32 ~~~IrLTp~~~~~~G~~w~~~p~~~~---~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~--~~~G~~fG~~--------~ 98 (248)
T cd06901 32 SQYIRLTPDHQSKQGSIWNRVPCYLR---DWEMHVHFKVHGSGKNLFGDGFAIWYTKER--MQPGPVFGSK--------D 98 (248)
T ss_pred CCeEEECCCCCCCEEEEeccCCccCC---CEEEEEEEEEeCCCCCCCCCEEEEEEEcCC--CccCcccccC--------C
Confidence 35677887666577888999999995 899999 99965321 1122 2223221 1222222210 1
Q ss_pred CCcEEEEEEeCCCC-C--CCCCCCeEEEecC-CCcCceee------eecCCCcccc-CCCceEEEEEEEcCCccEEEEEE
Q 040710 78 DMHQLAVELDTFKN-D--FDVDGNHVAIDTT-SISQPVAV------ESLNSTGVDL-KSGKNITVIIQYNGSQNLIYVNV 146 (202)
Q Consensus 78 ~n~~vAVEFDT~~n-~--~Dp~~nHVgIdvn-s~~~S~~~------~~~~~~~~~l-~~G~~~~vwI~Yd~~~~~L~V~l 146 (202)
.-.=+||-|||+.| . .....+-|.+-+| +.. .-.. ..++.-.... +.+....++|.|... .|.|.+
T Consensus 99 ~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~-~yd~~~Dg~~~~~~~C~~~~rn~~~~t~~rI~Y~~~--~l~v~v 175 (248)
T cd06901 99 NFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSL-SYDHDRDGTHTELAGCSAPFRNKDHDTFVAIRYSKG--RLTVMT 175 (248)
T ss_pred CCceEEEEEECCCCCCCcccCCCceEEEEEcCCCe-eecccCCCchhhcCceeeeccCCCCCeEEEEEEECC--eEEEEE
Confidence 22348999999998 2 1122233433333 322 1110 1111001112 234456899999975 577777
Q ss_pred eeCCCCC-ceeeeeeeccCC-CCCCeEEEEEeeecCCCccceEEEEEEEeecCCC
Q 040710 147 RDTDHPP-KNVIKQPINLSD-IVPSSVYVGFTAATGALAESHQLLEWSLTSQPLP 199 (202)
Q Consensus 147 ~~~~kp~-~plLs~~vdLs~-~l~~~v~VGFSAsTG~~~~~h~I~sWsF~s~~~p 199 (202)
+...+.. ..|+.. .. .||...|+||||+||...+.|+|++-.+..-..|
T Consensus 176 d~~~~~~w~~Cf~~----~~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~l~~~ 226 (248)
T cd06901 176 DIDGKNEWKECFDV----TGVRLPTGYYFGASAATGDLSDNHDIISMKLYELDVE 226 (248)
T ss_pred ecCCCCceeeeEEe----CCeecCCCCEEEEEecCCCCCCcEEEEEEEEecCccc
Confidence 6432221 223322 22 3677799999999999999999999777654444
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=98.28 E-value=7e-05 Score=63.30 Aligned_cols=166 Identities=18% Similarity=0.175 Sum_probs=91.9
Q ss_pred cceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCC--ccee-eeeccCCCCCCCC-CeeeeeccccccCCC
Q 040710 3 STQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISD--RKRL-VSISSIRPLLYVA-NSLRVINYMLEIVGT 77 (202)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~--~~~~-~~~~~~~P~~~~g-g~LGL~~~~~~~~~~ 77 (202)
..+|.|+-. .-|.|..+-..|+++-+ +|+..| |.|..... ..++ +-+.... +...| ..+| .. .
T Consensus 33 ~~~IrLTp~-~s~~G~iWs~~pl~~~~--~w~ie~~Fri~G~~~~~gdGla~W~t~~~-~~~~g~~~fG---~~-----~ 100 (215)
T cd06903 33 SGRIILTPP-GNQRGSLWLKKPLSLKD--EWTIEWTFRSTGPEGRSGGGLNFWLVKDG-NADVGTSSIY---GP-----S 100 (215)
T ss_pred CCeEEECCC-CCceEeEeeCCcCCCCC--CEEEEEEEEecccCCcCCCEEEEEEECCC-cccCCccccC---CC-----C
Confidence 357788863 33333335577777775 899999 99854432 1122 2222221 11111 1121 10 1
Q ss_pred CCcEEEEEEeCCCCCCCCCCCeEEEecC-CCcCceeee-----ecCCCcc-ccCCCceEEEEEEEcCCccEEEEEEeeCC
Q 040710 78 DMHQLAVELDTFKNDFDVDGNHVAIDTT-SISQPVAVE-----SLNSTGV-DLKSGKNITVIIQYNGSQNLIYVNVRDTD 150 (202)
Q Consensus 78 ~n~~vAVEFDT~~n~~Dp~~nHVgIdvn-s~~~S~~~~-----~~~~~~~-~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~ 150 (202)
.-.=+||.|||+.| ....|.+-.| +.. ..... .++.=.. ..+.+.+.+++|.|....+.|+|.++.
T Consensus 101 ~f~Gl~I~~Dt~~n----~~p~i~~~~NDGt~-~yd~~~d~~~~~g~C~~~~rn~~~p~~iri~Y~~~~~~l~v~vd~-- 173 (215)
T cd06903 101 KFDGLQLLIDNNGG----SGGSLRGFLNDGSK-DYKNEDVDSLAFGSCLFAYQDSGVPSTIRLSYDALNSLFKVQVDN-- 173 (215)
T ss_pred CCcEEEEEEECCCC----CCceEEEEECCCCe-eccccCCcccccceeeEeccCCCCCEEEEEEEECCCCEEEEEECC--
Confidence 22238999999976 1233433333 322 11111 1111001 134566789999999977788888753
Q ss_pred CCCceeeee-eeccCCCCC-CeEEEEEeeecCCCccceEEEEEEEe
Q 040710 151 HPPKNVIKQ-PINLSDIVP-SSVYVGFTAATGALAESHQLLEWSLT 194 (202)
Q Consensus 151 kp~~plLs~-~vdLs~~l~-~~v~VGFSAsTG~~~~~h~I~sWsF~ 194 (202)
+.+... .+. || ...|+||||+||...+.|+|++-.+-
T Consensus 174 ---~~Cf~~~~v~----lP~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 174 ---RLCFQTDKVQ----LPQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred ---CEEEecCCee----cCCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 233332 233 45 45679999999999999999986543
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=98.09 E-value=0.00017 Score=61.23 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=93.4
Q ss_pred cceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCCc---cee-eeeccCCCCCCCCCeeeeeccccccCCC
Q 040710 3 STQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISDR---KRL-VSISSIRPLLYVANSLRVINYMLEIVGT 77 (202)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~~---~~~-~~~~~~~P~~~~gg~LGL~~~~~~~~~~ 77 (202)
...|.|+-...-+.+..+-..|+++- +|+..| |.|.....+ .+. +-+...... .|..+|-. .
T Consensus 34 ~~~IrLTp~~~~~~G~iws~~~~~~~---~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~~--~G~~fG~~--------~ 100 (229)
T PF03388_consen 34 DNFIRLTPDRQSQSGSIWSRKPIPFD---NWEIEFTFRISGQEKGLGGDGMAFWYTKDPGS--DGPVFGGP--------D 100 (229)
T ss_dssp SSEEEEE-SSTTEEEEEEESS-BEES---EEEEEEEEEEESS-SSS-S-EEEEEEESSSSS--SCSBTTB---------S
T ss_pred CCEEEECCCcccCEEEEEEcCCCCcc---CEEEEEEEEEeccccCcCCCeEEEEEEcCccc--cccccCCC--------c
Confidence 35688887766677777788999885 999999 998654221 111 222222211 33333311 1
Q ss_pred CCcEEEEEEeCCCC-CC--CCCCCeEEEecC-CCcCceeee------ecCCCccccC-CCceEEEEEEEcCCccEEEEEE
Q 040710 78 DMHQLAVELDTFKN-DF--DVDGNHVAIDTT-SISQPVAVE------SLNSTGVDLK-SGKNITVIIQYNGSQNLIYVNV 146 (202)
Q Consensus 78 ~n~~vAVEFDT~~n-~~--Dp~~nHVgIdvn-s~~~S~~~~------~~~~~~~~l~-~G~~~~vwI~Yd~~~~~L~V~l 146 (202)
.-.=++|=|||+.| +- .-....|.+-+| +.. ..... .++.-....+ .+.+..++|.|... .|.|.+
T Consensus 101 ~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~-~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ri~Y~~~--~l~v~i 177 (229)
T PF03388_consen 101 KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTK-SYDHDNDGKDQSLGSCSADYRNSDVPTRIRISYSKN--TLTVSI 177 (229)
T ss_dssp S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS----GGGTTTTT-SEEEE---BTESSEEEEEEEEETT--EEEEEE
T ss_pred ccceEEEEEEcccCCCcccccccceEEEEecCCCc-cccccccCcccccccceeccCcCCCCEEEEEEEECC--eEEEEE
Confidence 22348999999988 31 123345555554 211 11110 1110011222 34567899999987 466666
Q ss_pred eeC----CCCCceeeee-eeccCCCCCCeEEEEEeeecCCCccceEEEEEE
Q 040710 147 RDT----DHPPKNVIKQ-PINLSDIVPSSVYVGFTAATGALAESHQLLEWS 192 (202)
Q Consensus 147 ~~~----~kp~~plLs~-~vdLs~~l~~~v~VGFSAsTG~~~~~h~I~sWs 192 (202)
... ...-..|+.. .|+ ||+..|+||||+||...+.|+|++-.
T Consensus 178 d~~~~~~~~~~~~Cf~~~~v~----LP~~~yfGvSA~Tg~~~d~hdi~s~~ 224 (229)
T PF03388_consen 178 DSNYLKNQDDWELCFTTDGVD----LPEGYYFGVSAATGELSDNHDILSVK 224 (229)
T ss_dssp ETSCCSECCTTEEEEEESTEE----GGSSBEEEEEEEESSSGGEEEEEEEE
T ss_pred ecccccCCcCCcEEEEcCCee----cCCCCEEEEEecCCCCCCcEEEEEEE
Confidence 521 1223445543 233 57778999999999999999999853
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.076 Score=48.72 Aligned_cols=107 Identities=22% Similarity=0.429 Sum_probs=63.3
Q ss_pred EEEEEeCCCCCCCCCCCeEEEecC-CCcCceeee------ecCCCccccCCC-ceEEEEEEEcCCccEEEEEEeeCCCCC
Q 040710 82 LAVELDTFKNDFDVDGNHVAIDTT-SISQPVAVE------SLNSTGVDLKSG-KNITVIIQYNGSQNLIYVNVRDTDHPP 153 (202)
Q Consensus 82 vAVEFDT~~n~~Dp~~nHVgIdvn-s~~~S~~~~------~~~~~~~~l~~G-~~~~vwI~Yd~~~~~L~V~l~~~~kp~ 153 (202)
+++=||.+.|+---|..-|.+-.| +-. +-... -+++---+.+|. -+..++|+|-.. +|+|-+...-.|+
T Consensus 136 igiffDSfdnD~qknnP~Is~~lndGt~-~ydh~~DGasQ~LssCqrDFRNkPyPvRarItY~~n--vLtv~innGmtp~ 212 (497)
T KOG3838|consen 136 IGIFFDSFDNDGQKNNPAISVLLNDGTI-PYDHPGDGASQGLSSCQRDFRNKPYPVRARITYYGN--VLTVMINNGMTPS 212 (497)
T ss_pred eEEEeecccccCCcCCccEEEEecCCcc-cccCCCccHHHHHHHhhHHhccCCCCceEEEEEecc--EEEEEEcCCCCCC
Confidence 789999997722223345555544 211 11100 011000122221 156899999875 8888887633343
Q ss_pred ceeeeeeeccCC-CCCCeEEEEEeeecCCCccceEEEEEE
Q 040710 154 KNVIKQPINLSD-IVPSSVYVGFTAATGALAESHQLLEWS 192 (202)
Q Consensus 154 ~plLs~~vdLs~-~l~~~v~VGFSAsTG~~~~~h~I~sWs 192 (202)
.+ ...-++... .||..-|+|.||+||+...-|+|+++.
T Consensus 213 d~-yE~C~rve~~~lp~nGyFGvSAATGgLADDHDVl~Fl 251 (497)
T KOG3838|consen 213 DD-YEFCVRVENLLLPPNGYFGVSAATGGLADDHDVLSFL 251 (497)
T ss_pred CC-cceeEeccceeccCCCeeeeeecccccccccceeeeE
Confidence 21 222233344 468899999999999999999999974
No 10
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=95.96 E-value=0.82 Score=39.58 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=93.2
Q ss_pred EEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCCc--c--eeeeecc-CCC-CCCCCCeeeeeccccccCCCCC
Q 040710 7 LLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISDR--K--RLVSISS-IRP-LLYVANSLRVINYMLEIVGTDM 79 (202)
Q Consensus 7 ~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~~--~--~~~~~~~-~~P-~~~~gg~LGL~~~~~~~~~~~n 79 (202)
-|++-.+.++.-+.|.++++--. .-....| +..-..... . ..+..+. ..| ....||.||..-......|-..
T Consensus 35 RLT~~~~nqata~~~~~~FPs~~-n~v~veFd~yayg~~g~GADGia~vLsDasv~p~~G~fGGsLGYa~~~~~~~GfaG 113 (255)
T cd06900 35 RLTDASGNQATAVTLQRLFPSAG-NYVEVEFDYYAYGSGGNGADGVALVLSDASVTPQAGAFGGSLGYAQRNDGVPGFAG 113 (255)
T ss_pred EeccCccCcceeEEEeeeeccCC-CeEEEEEEEEEecCCCCCCceEEEEEeCCCcCCcCCCcCcccccccccCCCCcccc
Confidence 36777777877788888777653 1255666 333221111 1 1233222 333 2346888998755432233456
Q ss_pred cEEEEEEeCCCCCC-CCCC----------CeEEEecCCCcCce--eeeecC-----CCccccCC----CceEEEEEEEcC
Q 040710 80 HQLAVELDTFKNDF-DVDG----------NHVAIDTTSISQPV--AVESLN-----STGVDLKS----GKNITVIIQYNG 137 (202)
Q Consensus 80 ~~vAVEFDT~~n~~-Dp~~----------nHVgIdvns~~~S~--~~~~~~-----~~~~~l~~----G~~~~vwI~Yd~ 137 (202)
..+.|-||.|-| | .+.+ +.|+| .+.- +. ....+. ...++..+ ...|.=+|+-|+
T Consensus 114 GwLGiGlDEyGN-Fsn~~eg~~~~~g~r~~sV~v--RGsg-~g~~gY~yl~gt~~~~~~id~~~~~~~~~~hrY~i~Ids 189 (255)
T cd06900 114 GWLGIGLDEYGN-FSNPNEGRNGFSGRRPQSVTV--RGSG-SGYTGYKYITGTGVLPPGIDNNSTSTPAPGHRYRITIDS 189 (255)
T ss_pred ceEEEEEecccc-ccCCCCCccCCcccccceEEE--ECCC-CCCcCceEecccCCCCcccccCCCCCCCCceEEEEEEec
Confidence 689999999988 2 2221 22222 2222 11 001110 00111111 122444444444
Q ss_pred C---ccEEEEEEeeCCCC-Cceeee-e-eeccC--CCCCCeEEEEEeeecCCCccceEEEEEEEe
Q 040710 138 S---QNLIYVNVRDTDHP-PKNVIK-Q-PINLS--DIVPSSVYVGFTAATGALAESHQLLEWSLT 194 (202)
Q Consensus 138 ~---~~~L~V~l~~~~kp-~~plLs-~-~vdLs--~~l~~~v~VGFSAsTG~~~~~h~I~sWsF~ 194 (202)
. ...|+|.-+....- -.+++. . .++.. ..+|+..+++|++|||.+...|.|-....+
T Consensus 190 ~~~~~~~vsV~R~~~~gg~~~~~I~~~d~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~VC 254 (255)
T cd06900 190 TNGDNAWLSVERDIGNGGAYFVVILTFDALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQVC 254 (255)
T ss_pred CCCCceEEEEEEEccCCceeEEeecceeeccccCCCCCCccEEEEEEecCCCcccceeecceEec
Confidence 3 23455544422111 122221 1 12333 467899999999999999999999876543
No 11
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.098 Score=46.93 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=91.4
Q ss_pred cceEEEEEEeceEEeeeeecCeEeccccceeeEEe-eeeeeeCCcce----eeeeccCCCCCCCCCeeeeeccccccCCC
Q 040710 3 STQILLVLEMGWRLFLHLIACPRQLSVLAHFSESW-INILKISDRKR----LVSISSIRPLLYVANSLRVINYMLEIVGT 77 (202)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~y~~p~~l~~~asFsT~F-F~i~~~~~~~~----~~~~~~~~P~~~~gg~LGL~~~~~~~~~~ 77 (202)
+.+|-|+--+=|+.+-.+=..||-.. +|.--+ |.+........ +..++..+-. .|-.||-++
T Consensus 84 ~~~irLT~d~qsk~GAv~n~~Pv~s~---~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~q--~GPvFG~~d-------- 150 (351)
T KOG3839|consen 84 SNYIRLTPDEQSKSGAVWNRQPVFSR---DWEVLVHFKVHGQSKNLFGDGMAIWYTKERAQ--PGPVFGSKD-------- 150 (351)
T ss_pred eeeeeccccccccccccccCCCcccc---ceeEEEEEEEecCCCcccccceEEEeeccccc--CCCCCCCcc--------
Confidence 44566666566665544556666544 788888 88765444221 1222222211 344454322
Q ss_pred CCcEEEEEEeCCCCCCCCC---CCeEEEecC-CCcCcee------eeecCCCccccCCCc-eEEEEEEEcCCccEEEEEE
Q 040710 78 DMHQLAVELDTFKNDFDVD---GNHVAIDTT-SISQPVA------VESLNSTGVDLKSGK-NITVIIQYNGSQNLIYVNV 146 (202)
Q Consensus 78 ~n~~vAVEFDT~~n~~Dp~---~nHVgIdvn-s~~~S~~------~~~~~~~~~~l~~G~-~~~vwI~Yd~~~~~L~V~l 146 (202)
+-+-+||=.|||.|..-|. -.-|.+.+| +.. |.. .+.++.-...+++.. .-.+-|.|+. ++|++..
T Consensus 151 kF~GL~vfidtY~n~~g~~~~v~P~isvmv~~gs~-sYD~~~Dg~~tel~gc~a~~rn~~~dt~~~iry~~--~~l~~~~ 227 (351)
T KOG3839|consen 151 KFTGLAVFIDTYGNHNGPHEHVFPYISVMVNIGSL-SYDHSKDGTHTELAGCTANFRNLPHDTLVVIRYEK--KTLSISI 227 (351)
T ss_pred cceeEEEEEeccCCcCCCcccceeeEEEEeccCCc-ccccCCCCCccccccceeeeccCCCcceeEEEecC--CceEEEE
Confidence 2345899999998722111 123444433 111 111 111110011222222 2357789998 5666665
Q ss_pred eeCCCCCceeeeeeeccCCC-CCCeEEEEEeeecCCCccceEEEEE
Q 040710 147 RDTDHPPKNVIKQPINLSDI-VPSSVYVGFTAATGALAESHQLLEW 191 (202)
Q Consensus 147 ~~~~kp~~plLs~~vdLs~~-l~~~v~VGFSAsTG~~~~~h~I~sW 191 (202)
+...+ . ....-.+|..+ ||.--|+|+||+||.....|+|.+-
T Consensus 228 dl~~~-~--~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~ 270 (351)
T KOG3839|consen 228 DLEGP-N--EWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSL 270 (351)
T ss_pred ecCCC-c--eeeeeeeecceecccceEEeeeeccCccchhhHHHHh
Confidence 55332 1 13334566654 6778899999999999999999874
No 12
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=27.39 E-value=4.1e+02 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=16.1
Q ss_pred ccccCCCceEEEEEEEcCC-ccEEEE
Q 040710 120 GVDLKSGKNITVIIQYNGS-QNLIYV 144 (202)
Q Consensus 120 ~~~l~~G~~~~vwI~Yd~~-~~~L~V 144 (202)
...|++.+-|+|-|.=|.. ++.|.|
T Consensus 914 r~hlnDnrWHnV~I~rd~~~~HtL~v 939 (1591)
T KOG3514|consen 914 RQHLNDNRWHNVLIYRDKTNTHTLKV 939 (1591)
T ss_pred cCcCccccceeEEEEcCCCCceEEEe
Confidence 3567788888888877743 234443
No 13
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=25.27 E-value=4.6e+02 Score=28.08 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=42.9
Q ss_pred CCcEEEEEEeCCCCCCCCCCCeEEEecCCCcCceeeeecCCCccccCCCceEEEEEEEcCCccEEEEE
Q 040710 78 DMHQLAVELDTFKNDFDVDGNHVAIDTTSISQPVAVESLNSTGVDLKSGKNITVIIQYNGSQNLIYVN 145 (202)
Q Consensus 78 ~n~~vAVEFDT~~n~~Dp~~nHVgIdvns~~~S~~~~~~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~ 145 (202)
.+.++-||.-+-.+ =-+++|+++.. +..+... ...++|++-|+|.++=|....+|.|-
T Consensus 832 ~~dfir~eL~~~~~------vtf~~dvgnGp-~~~~V~s---~t~~nD~qWH~V~~Ern~K~a~LqVD 889 (1306)
T KOG3516|consen 832 INDFIRLELSSPVE------VTFAFDVGNGP-SQLTVRS---PTELNDNQWHQVRAERNSKEASLQVD 889 (1306)
T ss_pred CCceEEEEEcCCCc------eEEEEEcCCCc-eeEEEcC---CcccCCCceEEEEEEeccccceEEEc
Confidence 56688899877433 44577776655 5544444 25788999999999999999999884
No 14
>PHA02104 hypothetical protein
Probab=20.50 E-value=83 Score=22.32 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.6
Q ss_pred cCCCceEEEEEEEcCCc
Q 040710 123 LKSGKNITVIIQYNGSQ 139 (202)
Q Consensus 123 l~~G~~~~vwI~Yd~~~ 139 (202)
-.+|+..++.|||++..
T Consensus 55 a~~gkiynatidynak~ 71 (89)
T PHA02104 55 AQNGKIYNATIDYNAKR 71 (89)
T ss_pred hhCCeEEeeEEccCceE
Confidence 35899999999999974
Done!