Query 040711
Match_columns 501
No_of_seqs 220 out of 791
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.6E-34 1.2E-38 235.9 6.1 75 259-334 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.2E-33 4E-38 233.8 5.0 75 259-334 4-78 (78)
3 2zxx_A Geminin; coiled-coil, c 90.6 0.17 5.9E-06 42.0 3.3 28 94-121 41-68 (79)
4 1t2k_D Cyclic-AMP-dependent tr 82.0 2.5 8.6E-05 32.6 5.5 42 91-132 19-60 (61)
5 2wt7_A Proto-oncogene protein 80.9 3.8 0.00013 32.0 6.2 42 91-132 20-61 (63)
6 1wlq_A Geminin; coiled-coil; 2 80.2 1.6 5.4E-05 36.6 4.0 28 93-120 44-71 (83)
7 1uii_A Geminin; human, DNA rep 80.1 1.9 6.6E-05 36.0 4.5 27 94-120 53-79 (83)
8 1ci6_A Transcription factor AT 78.7 3.8 0.00013 32.1 5.6 42 91-132 20-61 (63)
9 1jnm_A Proto-oncogene C-JUN; B 75.2 2.4 8.2E-05 32.9 3.5 42 91-132 19-60 (62)
10 4dzo_A Mitotic spindle assembl 71.3 5.3 0.00018 35.3 5.2 34 94-127 4-37 (123)
11 2wvr_A Geminin; DNA replicatio 71.1 3.8 0.00013 39.3 4.5 27 94-120 122-148 (209)
12 3s9g_A Protein hexim1; cyclin 70.6 3 0.0001 35.9 3.3 21 94-114 65-85 (104)
13 2wt7_B Transcription factor MA 70.0 3.9 0.00013 34.6 3.8 35 94-128 55-89 (90)
14 3m91_A Proteasome-associated A 69.6 15 0.00052 27.9 6.7 42 93-134 8-49 (51)
15 1ci6_A Transcription factor AT 68.3 4.6 0.00016 31.6 3.7 28 93-120 36-63 (63)
16 1hjb_A Ccaat/enhancer binding 68.3 8.1 0.00028 32.4 5.4 39 94-132 36-74 (87)
17 3hnw_A Uncharacterized protein 67.7 12 0.00039 33.7 6.7 42 93-134 88-129 (138)
18 1dh3_A Transcription factor CR 67.6 6.1 0.00021 30.2 4.2 35 91-125 19-53 (55)
19 2rpr_A Flywch-type zinc finger 67.6 2.2 7.4E-05 34.8 1.8 51 269-332 21-73 (87)
20 2oa5_A Hypothetical protein BQ 66.8 4.1 0.00014 35.7 3.4 25 93-117 7-31 (110)
21 1t6f_A Geminin; coiled-coil, c 66.0 4.7 0.00016 28.8 3.0 24 93-116 13-36 (37)
22 2j5u_A MREC protein; bacterial 60.9 3.9 0.00013 39.8 2.5 23 96-118 38-60 (255)
23 1hjb_A Ccaat/enhancer binding 60.9 6.7 0.00023 32.9 3.5 30 93-122 49-78 (87)
24 1t2k_D Cyclic-AMP-dependent tr 58.4 10 0.00035 29.1 4.0 25 93-117 35-59 (61)
25 1gu4_A CAAT/enhancer binding p 57.2 9.2 0.00031 31.4 3.7 39 94-132 36-74 (78)
26 2dgc_A Protein (GCN4); basic d 56.5 13 0.00044 29.1 4.3 34 91-124 27-60 (63)
27 1wrd_A TOM1, target of MYB pro 52.5 36 0.0012 28.8 6.8 43 94-136 6-64 (103)
28 1gu4_A CAAT/enhancer binding p 50.4 7.5 0.00025 31.9 2.1 27 94-120 50-76 (78)
29 1gd2_E Transcription factor PA 48.6 15 0.00053 29.5 3.7 28 96-123 38-65 (70)
30 2w6b_A RHO guanine nucleotide 48.1 59 0.002 25.2 6.6 36 94-129 10-45 (56)
31 2c9l_Y EB1, zebra, BZLF1 trans 47.5 21 0.00074 27.7 4.1 20 104-123 32-51 (63)
32 3a7p_A Autophagy protein 16; c 45.9 53 0.0018 30.2 7.2 42 93-134 67-115 (152)
33 2oxj_A Hybrid alpha/beta pepti 45.8 26 0.00091 24.7 4.0 25 94-118 8-32 (34)
34 2yy0_A C-MYC-binding protein; 45.1 31 0.0011 26.2 4.7 27 95-121 20-46 (53)
35 3a5t_A Transcription factor MA 44.2 0.36 1.2E-05 42.1 -7.1 35 98-132 69-103 (107)
36 3m9b_A Proteasome-associated A 43.3 23 0.00078 35.0 4.7 42 93-134 53-94 (251)
37 3l4f_A RHO guanine nucleotide 43.3 77 0.0026 25.1 6.7 44 96-139 9-52 (61)
38 3oja_A Leucine-rich immune mol 43.3 41 0.0014 34.5 6.9 44 94-137 435-478 (487)
39 4h22_A Leucine-rich repeat fli 42.9 50 0.0017 28.6 6.2 37 95-131 45-81 (103)
40 4etp_A Kinesin-like protein KA 42.9 37 0.0013 35.1 6.5 40 95-134 4-43 (403)
41 2wt7_A Proto-oncogene protein 42.8 29 0.00098 26.9 4.3 26 93-118 36-61 (63)
42 3n7n_E Monopolin complex subun 42.7 5.2 0.00018 34.2 0.0 24 93-116 49-72 (95)
43 2oc5_A Hypothetical protein; D 41.3 24 0.00081 34.1 4.3 42 94-135 171-213 (244)
44 3mud_A DNA repair protein XRCC 40.7 24 0.00083 33.1 4.2 33 93-125 141-173 (175)
45 2z5i_A TM, general control pro 40.6 30 0.001 26.2 4.0 34 93-126 18-51 (52)
46 1lwu_C Fibrinogen gamma chain; 39.4 60 0.002 33.0 7.2 46 93-138 11-56 (323)
47 3a7o_A Autophagy protein 16; c 39.1 81 0.0028 25.7 6.4 41 94-134 18-58 (75)
48 2yy0_A C-MYC-binding protein; 38.2 54 0.0018 24.9 5.1 28 91-118 23-50 (53)
49 3mtu_E Head morphogenesis prot 37.7 43 0.0015 27.6 4.7 33 93-125 43-75 (77)
50 2wuj_A Septum site-determining 36.4 28 0.00096 26.6 3.3 28 94-121 27-54 (57)
51 1jnm_A Proto-oncogene C-JUN; B 35.0 16 0.00054 28.2 1.7 25 94-118 36-60 (62)
52 1zxa_A CGMP-dependent protein 34.7 40 0.0014 27.0 4.0 32 91-122 22-53 (67)
53 1wt6_A Myotonin-protein kinase 33.7 99 0.0034 25.7 6.3 37 97-133 27-63 (81)
54 3q8t_A Beclin-1; autophagy, AT 33.6 1.3E+02 0.0044 25.2 7.2 40 98-137 36-75 (96)
55 2efr_A General control protein 32.8 93 0.0032 28.5 6.7 42 94-135 105-146 (155)
56 1uii_A Geminin; human, DNA rep 32.7 78 0.0027 26.4 5.5 28 94-121 46-73 (83)
57 3q4f_C DNA repair protein XRCC 32.2 32 0.0011 32.5 3.6 22 94-115 161-182 (186)
58 3bas_A Myosin heavy chain, str 32.2 1.2E+02 0.004 24.9 6.7 40 93-132 20-59 (89)
59 2xdj_A Uncharacterized protein 31.3 1.4E+02 0.0048 24.5 6.9 42 96-137 22-63 (83)
60 3v86_A De novo design helix; c 30.9 39 0.0013 22.3 2.7 21 93-113 6-26 (27)
61 1wmi_B RELB, hypothetical prot 30.1 28 0.00094 27.6 2.3 20 99-118 9-28 (67)
62 2jee_A YIIU; FTSZ, septum, coi 30.0 1.7E+02 0.0057 24.3 7.1 39 93-131 19-57 (81)
63 1am9_A Srebp-1A, protein (ster 28.4 57 0.002 26.3 4.1 28 92-119 48-75 (82)
64 1oxz_A ADP-ribosylation factor 27.9 93 0.0032 29.2 5.9 47 91-137 66-129 (186)
65 1naf_A ADP-ribosylation factor 27.3 85 0.0029 28.8 5.4 48 90-137 49-113 (158)
66 2oqq_A Transcription factor HY 27.3 74 0.0025 23.4 4.0 23 95-117 18-40 (42)
67 3o0z_A RHO-associated protein 27.2 1.5E+02 0.0053 27.5 7.2 33 96-128 106-138 (168)
68 1nkp_B MAX protein, MYC proto- 26.4 47 0.0016 26.6 3.2 7 69-75 16-22 (83)
69 1fxk_C Protein (prefoldin); ar 25.6 1.4E+02 0.0048 25.5 6.3 48 90-137 84-131 (133)
70 1o3x_A ADP-ribosylation factor 25.5 1.1E+02 0.0036 27.5 5.6 31 90-120 40-70 (140)
71 1p9i_A Cortexillin I/GCN4 hybr 25.5 78 0.0027 21.4 3.5 23 99-121 4-26 (31)
72 4etp_A Kinesin-like protein KA 24.3 1.2E+02 0.0042 31.2 6.7 46 93-138 9-57 (403)
73 3s9g_A Protein hexim1; cyclin 24.2 1.9E+02 0.0066 24.9 6.6 39 97-135 40-78 (104)
74 3bas_A Myosin heavy chain, str 24.0 1.7E+02 0.0059 23.9 6.3 42 97-138 10-51 (89)
75 3w03_C DNA repair protein XRCC 23.5 82 0.0028 29.7 4.7 26 94-119 152-177 (184)
76 1odh_A MGCM1; transcription fa 23.5 54 0.0018 30.6 3.3 39 295-336 122-160 (174)
77 3u06_A Protein claret segregat 23.3 1.4E+02 0.0047 31.0 6.8 33 98-130 7-39 (412)
78 1go4_E MAD1 (mitotic arrest de 23.0 70 0.0024 27.5 3.7 25 96-120 70-94 (100)
79 1fmh_A General control protein 23.0 1.4E+02 0.0049 20.4 4.5 28 95-122 2-29 (33)
80 3m9b_A Proteasome-associated A 22.9 55 0.0019 32.3 3.5 20 95-114 76-95 (251)
81 2xdj_A Uncharacterized protein 22.9 1.7E+02 0.006 24.0 6.0 43 94-136 27-69 (83)
82 3sja_C Golgi to ER traffic pro 22.8 1.6E+02 0.0056 23.4 5.5 39 94-132 6-56 (65)
83 3hnw_A Uncharacterized protein 22.4 2.3E+02 0.0078 25.2 7.2 37 96-132 84-120 (138)
84 4h22_A Leucine-rich repeat fli 22.4 2.2E+02 0.0075 24.6 6.7 42 93-134 36-77 (103)
85 2zqm_A Prefoldin beta subunit 22.2 1.5E+02 0.0052 24.4 5.7 46 92-137 68-113 (117)
86 1go4_E MAD1 (mitotic arrest de 22.0 96 0.0033 26.6 4.4 26 93-118 11-36 (100)
87 3sjb_C Golgi to ER traffic pro 21.9 1.5E+02 0.0052 25.1 5.5 43 91-133 20-74 (93)
88 3u06_A Protein claret segregat 21.4 1.5E+02 0.0052 30.7 6.7 33 94-126 10-42 (412)
89 2wg5_A General control protein 20.9 78 0.0027 26.9 3.7 24 95-118 8-31 (109)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.6e-34 Score=235.95 Aligned_cols=75 Identities=52% Similarity=1.108 Sum_probs=72.1
Q ss_pred ccEEEeeCCCCCCCCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCC
Q 040711 259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 334 (501)
Q Consensus 259 ~rv~v~~~s~~~~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~ 334 (501)
.||.|++.++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 389999999999999999999999999999999999999998 699999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.98 E-value=1.2e-33 Score=233.84 Aligned_cols=75 Identities=56% Similarity=1.058 Sum_probs=68.8
Q ss_pred ccEEEeeCCCCCCCCCcchhhcccCcccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCC
Q 040711 259 ARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 334 (501)
Q Consensus 259 ~rv~v~~~s~~~~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~ 334 (501)
.||.|+++++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478899999999999999999999999999999999999999 799999999999999999999999999999874
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.62 E-value=0.17 Score=41.97 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTT 121 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~ 121 (501)
.++..+++||.++++||+.|++|++++.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999874
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.95 E-value=2.5 Score=32.61 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
+++..+..|+.+.+.+..||..|+.-+..+......|..+|+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556788999999999999999999999999999998887764
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.87 E-value=3.8 Score=31.96 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
+++..+..|+.+.+.+..||..|+.-+..+..-+..|...|.
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999988888888876553
No 6
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=80.19 E-value=1.6 Score=36.55 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
..++..+++|+.++++||++|+.+-+++
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999887765
No 7
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=80.10 E-value=1.9 Score=36.02 Aligned_cols=27 Identities=26% Similarity=0.542 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
.++..|++|+..+++||++||.+.+++
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776665
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.75 E-value=3.8 Score=32.08 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=35.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
+++.+...|+.+.+.+..||..|+.-++.+..-+..|..-|.
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999988888876554
No 9
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.24 E-value=2.4 Score=32.89 Aligned_cols=42 Identities=12% Similarity=0.320 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
+++..+..|+.+.+.+..||..|+.-++.+......|...|+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999998888887776654
No 10
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=71.31 E-value=5.3 Score=35.28 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDL 127 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaL 127 (501)
.|++.|++|++....-|+|||++...=...|..-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRea 37 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKA 37 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998877777654
No 11
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=71.07 E-value=3.8 Score=39.34 Aligned_cols=27 Identities=26% Similarity=0.542 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
.++..|++|+.++++||+.||.+.+++
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888776
No 12
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.58 E-value=3 Score=35.94 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLR 114 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk 114 (501)
..+..|++||+|++.||++|+
T Consensus 65 ~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999997
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.99 E-value=3.9 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQ 128 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQ 128 (501)
.+...|+.|+++++.||.+++.=++.+-..|.+|+
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678999999999999999999999999999885
No 14
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.58 E-value=15 Score=27.94 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~l 134 (501)
...+..|+.++..+.+-|.||..+|..-...-..|+.++-.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999998888888876543
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.35 E-value=4.6 Score=31.60 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
+.+...|++++.++..|+..||.||..|
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567899999999999999999999764
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.30 E-value=8.1 Score=32.37 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
.....++.+...+..||.+|+.-+.++......|+.-|+
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999988887665
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.66 E-value=12 Score=33.68 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~l 134 (501)
+.|+..|+.||-...+++..++.-+..+.+.++.||.++..+
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777788888888888887765
No 18
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.63 E-value=6.1 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=30.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSYN 125 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYn 125 (501)
+++.-+..|+.++..+.+||..|+.-|+.+...|.
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55677899999999999999999999988877663
No 19
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=67.61 E-value=2.2 Score=34.78 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCCCCcchhhcccCcccCCCCCCccccccccC--CCCccccceeeecCCCcEEEEEecccCCCCC
Q 040711 269 APLISDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNHPL 332 (501)
Q Consensus 269 ~~~~~DGy~WRKYGQK~ikgnp~pRsYYrCt~~--~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~ 332 (501)
..++-|||...+--+ . ..+-|.+|+.. .+|.|+-.... + . + ...+.||||.
T Consensus 21 ~~Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~--~-~--~~~~~HnH~p 73 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--H--R-I--MVMRSHCHQP 73 (87)
T ss_dssp EEEEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--T--E-E--EECSCCSSCC
T ss_pred cEEEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--C--C-E--ECCCCcCCCC
Confidence 346779998775321 1 23579999973 58999754432 1 2 2 2468899974
No 20
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=66.83 E-value=4.1 Score=35.68 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNML 117 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML 117 (501)
..-++.|.+||.|++-||+.||.-|
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999544
No 21
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=66.04 E-value=4.7 Score=28.83 Aligned_cols=24 Identities=33% Similarity=0.655 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNM 116 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~M 116 (501)
..++++-++|+.++++||..|+++
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhh
Confidence 357888899999999999999864
No 22
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=60.91 E-value=3.9 Score=39.82 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040711 96 LSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
|.....+++.+++||+|||.+|.
T Consensus 38 l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555566667777776654
No 23
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=60.89 E-value=6.7 Score=32.88 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTK 122 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~ 122 (501)
..|.+.|++|++.++.|...||.||.++-.
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 356688999999999999999999987543
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.39 E-value=10 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNML 117 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML 117 (501)
..+...|+.|+..+.+|+..|+.+|
T Consensus 35 ~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 35 SSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999887
No 25
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.18 E-value=9.2 Score=31.40 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
.....++.+...+..||..|+.-+.++......|+.-|+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999998888888876554
No 26
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=56.49 E-value=13 Score=29.13 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTKSY 124 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nY 124 (501)
+++..+..|+.+++.+..||..|+.-+.++..-|
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998777665443
No 27
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=52.54 E-value=36 Score=28.84 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhhhHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQ----------------TTKSYNDLQSQLLLAMQ 136 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~----------------v~~nYnaLQmql~~lmQ 136 (501)
++++.+..||++|+.==+-|.+||+. +...|..+|-.++.++.
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~ 64 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIP 64 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999988999999984 44556666777776665
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=50.44 E-value=7.5 Score=31.94 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
.|...|+.|+..+..|...||.||.++
T Consensus 50 ~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 50 AENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 466789999999999999999988664
No 29
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.62 E-value=15 Score=29.49 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040711 96 LSELKGELQRLHEENRKLRNMLDQTTKS 123 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~~v~~n 123 (501)
+..|+.+...+..||..||..+..+...
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566777777666655543
No 30
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=48.14 E-value=59 Score=25.24 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQS 129 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQm 129 (501)
+-+=+|+.|+..++.||++|+..|+.=.+--..|-.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999988876665555544
No 31
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=47.53 E-value=21 Score=27.74 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 040711 104 QRLHEENRKLRNMLDQTTKS 123 (501)
Q Consensus 104 ~Rv~eENkrLk~ML~~v~~n 123 (501)
.-..+||.|||-++.|||-.
T Consensus 32 aaks~en~rlr~l~kqmcps 51 (63)
T 2c9l_Y 32 AAKSSENDRLRLLLKQMCPS 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCTT
T ss_pred HhhcccchHHHHHHHHhCCc
Confidence 34468999999999999853
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.91 E-value=53 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLR-------NMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk-------~ML~~v~~nYnaLQmql~~l 134 (501)
...+..|+.|+..+..+.+.|. ..+..+..-|-+||.||-.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999888888888 66788889999999998644
No 33
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.85 E-value=26 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
+.++.|-.|=..+..|..|||.||.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3456666677778888899999884
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.14 E-value=31 Score=26.23 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 95 ELSELKGELQRLHEENRKLRNMLDQTT 121 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk~ML~~v~ 121 (501)
+++.|+.|+.+++.++..|+.-+..++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555555555555544444
No 35
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=44.20 E-value=0.36 Score=42.13 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 98 ELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 98 ~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
.|+.|++++.+||.+|+.=++.+...|.+|+.++.
T Consensus 69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~ 103 (107)
T 3a5t_A 69 ELQQEVEKLASENASMKLELDALRSKYEALQNFAR 103 (107)
T ss_dssp TTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999999996654
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.35 E-value=23 Score=34.98 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~l 134 (501)
...+..|+.++..+.+.|++|+..|....+....|+.++-.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999999999999999999998544
No 37
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=43.31 E-value=77 Score=25.06 Aligned_cols=44 Identities=23% Similarity=0.490 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Q 040711 96 LSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKLA 139 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQqq~ 139 (501)
+=+|+-|+..++.||++++..|+..-+-=..|..-+-.++.+.+
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44789999999999999999999988888888776666665543
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.27 E-value=41 Score=34.52 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQq 137 (501)
.+++..++|.+++++||.||+..+.++...-..-...+.++.++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 44566777777778888888888877666555554455555443
No 39
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.94 E-value=50 Score=28.57 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 040711 95 ELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQL 131 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql 131 (501)
.++.++-|+++...|-++||.+.+.+...+..||.+|
T Consensus 45 ~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 45 QLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544
No 40
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.91 E-value=37 Score=35.07 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 040711 95 ELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~l 134 (501)
++++|++||+++++|.+.|..-+.++...+..|+.+|...
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666555543
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.81 E-value=29 Score=26.88 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
..+...|+.|+..+.+|...|+.||.
T Consensus 36 ~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 36 EDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999998885
No 42
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=42.70 E-value=5.2 Score=34.16 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNM 116 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~M 116 (501)
..++..|-.||..++.||.+||++
T Consensus 49 QrQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 49 QRQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999975
No 43
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=41.26 E-value=24 Score=34.13 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKL-RNMLDQTTKSYNDLQSQLLLAM 135 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrL-k~ML~~v~~nYnaLQmql~~lm 135 (501)
.-+++.++||++++.||--| +.||++|..+-..|.|-=..+|
T Consensus 171 ~~f~~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~Mekealv 213 (244)
T 2oc5_A 171 ANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLI 213 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44688999999999999876 7899999999999998755554
No 44
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=40.66 E-value=24 Score=33.10 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYN 125 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYn 125 (501)
+.++..|++||.+.+++|+.+.++|++.....+
T Consensus 141 qkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 141 EKSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677788888888888888888877665543
No 45
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=40.62 E-value=30 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYND 126 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYna 126 (501)
..++..|+.||..-+++|+.+..+|++....++.
T Consensus 18 ek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~~ 51 (52)
T 2z5i_A 18 KKLVDDLEDELYAQKLKYKAISEELDHALNDMTS 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999998766553
No 46
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=39.44 E-value=60 Score=32.96 Aligned_cols=46 Identities=20% Similarity=0.082 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKL 138 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQqq 138 (501)
.+|+..|+.-|.++.++-+.|+.+|..+..+...|+.++.+++.+-
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888999999999999999999999998887653
No 47
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=39.11 E-value=81 Score=25.69 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~l 134 (501)
..++.|++||..--.|=.+|++.|..=.+||..|---+..+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 37899999999999999999999999999999988777654
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.18 E-value=54 Score=24.88 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
.-+.|++.|+++++.+.++|+.|+.=|.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677777777777777777766553
No 49
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=37.68 E-value=43 Score=27.61 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYN 125 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYn 125 (501)
..++..|+.+|...+++|+.+..+|++....-+
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELn 75 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQMLDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 467888999999999999999999998876654
No 50
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=36.44 E-value=28 Score=26.57 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTT 121 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~ 121 (501)
.=|..+..+++++..||..|++-|..+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888887776554
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.98 E-value=16 Score=28.19 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
.+...|+.|+..+.+|+..||.||-
T Consensus 36 ~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 36 AQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999988874
No 52
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.69 E-value=40 Score=27.04 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQTTK 122 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~ 122 (501)
.++.-+..|+.+|+.-.+|.+.||.-|++++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999988877654
No 53
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.67 E-value=99 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 040711 97 SELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLL 133 (501)
Q Consensus 97 ~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~ 133 (501)
..+++||.+|++.|.-+-.=|......+..|+.++-.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998888888888888888887643
No 54
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.55 E-value=1.3e+02 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 040711 98 ELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 98 ~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQq 137 (501)
.|..||..+.+|=++|..==.+.-..||+++.+++.+..+
T Consensus 36 ~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 36 VVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455667799999998876543
No 55
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=32.78 E-value=93 Score=28.49 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAM 135 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lm 135 (501)
.++..|..+|...++.++.+..+|+++...++.++.-|..+-
T Consensus 105 k~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 105 KSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 457788888999999999999999999999999988887653
No 56
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.71 E-value=78 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTT 121 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~ 121 (501)
.|...|..+++.+.+|+..||.|+..+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777766654
No 57
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=32.24 E-value=32 Score=32.52 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRN 115 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ 115 (501)
..++.|+++.+.+.+||+||..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999964
No 58
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.23 E-value=1.2e+02 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
+.++..|++.|.+....=+.|..-...+...++.|+.|+.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ 59 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMK 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556677777777778888887743
No 59
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.34 E-value=1.4e+02 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 040711 96 LSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQq 137 (501)
+..|+-.|+.++.|..+||+.+++....-+.|+.+--++.+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999988888888887776665554
No 60
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=30.92 E-value=39 Score=22.25 Aligned_cols=21 Identities=43% Similarity=0.730 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKL 113 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrL 113 (501)
++|+..|+.|.+-++.|=+.|
T Consensus 6 kdevgelkgevralkdevkdl 26 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhcc
Confidence 455666666666666665554
No 61
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=30.06 E-value=28 Score=27.64 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040711 99 LKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 99 Lq~EL~Rv~eENkrLk~ML~ 118 (501)
.-.||+|++-|-|||..||=
T Consensus 9 vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66799999999999998874
No 62
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.05 E-value=1.7e+02 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQL 131 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql 131 (501)
-+.+..||.|++.++++|..|..=...+...-..|....
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en 57 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELEREN 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345677888999999999887766666444444444443
No 63
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.37 E-value=57 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 92 SHTELSELKGELQRLHEENRKLRNMLDQ 119 (501)
Q Consensus 92 ~k~el~~Lq~EL~Rv~eENkrLk~ML~~ 119 (501)
+-+=+..|+.+++++.+||..|+..+.+
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345678999999999999999987654
No 64
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.91 E-value=93 Score=29.19 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=36.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENRKLRNMLDQ-----------------TTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENkrLk~ML~~-----------------v~~nYnaLQmql~~lmQq 137 (501)
...++++.+..||++|+.-=+-|.+||+. +...|..+|-.|+.+...
T Consensus 66 ~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 66 KRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577889999999999988899999985 555666666666666653
No 65
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.30 E-value=85 Score=28.77 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=37.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHHHHH
Q 040711 90 DKSHTELSELKGELQRLHEENRKLRNMLDQ-----------------TTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 90 k~~k~el~~Lq~EL~Rv~eENkrLk~ML~~-----------------v~~nYnaLQmql~~lmQq 137 (501)
.+..++++.+..||++|+.==+-|.+||+. +...|..+|-.|+.++..
T Consensus 49 ~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 49 QKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677899999999999988999999985 556666777777766654
No 66
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.29 E-value=74 Score=23.44 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 040711 95 ELSELKGELQRLHEENRKLRNML 117 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk~ML 117 (501)
..+.|.+.+.-+..||+.||.+|
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 34556666666778888888766
No 67
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.17 E-value=1.5e+02 Score=27.49 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 040711 96 LSELKGELQRLHEENRKLRNMLDQTTKSYNDLQ 128 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQ 128 (501)
|+.++.-+.++..||++|-+.|+.+.+.+..|.
T Consensus 106 l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 106 VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444455699999999999999999998
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.39 E-value=47 Score=26.64 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=3.5
Q ss_pred ccccccC
Q 040711 69 GVNIGLN 75 (501)
Q Consensus 69 ~VNtGLn 75 (501)
.||.++.
T Consensus 16 ~in~~f~ 22 (83)
T 1nkp_B 16 HIKDSFH 22 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3555554
No 69
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.59 E-value=1.4e+02 Score=25.46 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 040711 90 DKSHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 90 k~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQq 137 (501)
...++.++-|+..++.+.+.=++|..-|..+...+..++..+-.+|++
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556677888888888888888888888889999999888887765
No 70
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=25.54 E-value=1.1e+02 Score=27.47 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=26.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 90 DKSHTELSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 90 k~~k~el~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
.+..++++.+..||++|+.==+-|.+||+.+
T Consensus 40 ~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~ 70 (140)
T 1o3x_A 40 QKRMEKISKRVNAIEEVNNNVKLLTEMVMSH 70 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446778999999999999889999999863
No 71
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.53 E-value=78 Score=21.42 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040711 99 LKGELQRLHEENRKLRNMLDQTT 121 (501)
Q Consensus 99 Lq~EL~Rv~eENkrLk~ML~~v~ 121 (501)
|-+=|..+..||+.||.-++++.
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566789999987766554
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.34 E-value=1.2e+02 Score=31.15 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHh
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYND---LQSQLLLAMQKL 138 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYna---LQmql~~lmQqq 138 (501)
+.|+..|+.|++++.++.++|+.-|.++.+.|.. ++.+|...+|.-
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556655555555555555555555555544 344455445443
No 73
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.17 E-value=1.9e+02 Score=24.90 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 040711 97 SELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAM 135 (501)
Q Consensus 97 ~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lm 135 (501)
-.|...|.++.+||.||+..-...+..-.+|+..+-.+-
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 468889999999999999987777777777777665543
No 74
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.05 E-value=1.7e+02 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 040711 97 SELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQKL 138 (501)
Q Consensus 97 ~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQqq 138 (501)
+...+||..+.+|-++|++-|.........|..+++.+++.-
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777777777777653
No 75
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.51 E-value=82 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQ 119 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~ 119 (501)
+.+..|+++..++.+||+||+.=.++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777754443
No 76
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=23.47 E-value=54 Score=30.61 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=23.0
Q ss_pred ccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCCcc
Q 040711 295 YYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAA 336 (501)
Q Consensus 295 YYrCt~~~~CpvrKqVqr~~~D~~i~~~tY~G~HnH~~p~~~ 336 (501)
-+.|.---|=||. .+.|.. ...+...-+|.|+||.|++.
T Consensus 122 ~~~Crgh~GyPVT-hFWrh~--~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWRHD--GRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp EECCCTBTTBCCE-EEEEEC--SSBEEEEEECCCCSCCCCCH
T ss_pred eEeccCcCCCcce-EEEEEc--CCEEEEecccccCCCCCCCc
Confidence 3455543344553 344433 33355567899999999873
No 77
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.28 E-value=1.4e+02 Score=31.01 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 040711 98 ELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQ 130 (501)
Q Consensus 98 ~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmq 130 (501)
.|++||.+++++.+.|..-+.++...+..|..|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333333333333
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.99 E-value=70 Score=27.47 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 96 LSELKGELQRLHEENRKLRNMLDQT 120 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~~v 120 (501)
...++.+++.+.+|++|||..|..|
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888877544
No 79
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.96 E-value=1.4e+02 Score=20.37 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040711 95 ELSELKGELQRLHEENRKLRNMLDQTTK 122 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk~ML~~v~~ 122 (501)
|+++|+.|......||-.|..-+.++..
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6788999999999999988876666543
No 80
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.88 E-value=55 Score=32.29 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 040711 95 ELSELKGELQRLHEENRKLR 114 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk 114 (501)
+|..++.||.++++|+++|+
T Consensus 76 ~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444
No 81
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.87 E-value=1.7e+02 Score=23.99 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQ 136 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQ 136 (501)
.+|..|+.|+.+++=.++.+.--|+++.+.-..++..|=..+.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999888888888888888888877777776654443
No 82
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.81 E-value=1.6e+02 Score=23.41 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhHHHHHHHH
Q 040711 94 TELSELKGELQRLHEENR------------KLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENk------------rLk~ML~~v~~nYnaLQmql~ 132 (501)
.+...|+.|+.+++.|+. ||+.=++.+...|..|...+-
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467789999999999985 889999999999998887764
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.37 E-value=2.3e+02 Score=25.16 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 040711 96 LSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLL 132 (501)
Q Consensus 96 l~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~ 132 (501)
++.+..|+..++.|...++.=++.+.+.+..|+..+-
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444555555555555443
No 84
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.35 E-value=2.2e+02 Score=24.59 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLA 134 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~l 134 (501)
|+.|+.+++.|-.++.|++....=++.....+..|+.++-.+
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666777777777777776543
No 85
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.24 E-value=1.5e+02 Score=24.39 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 040711 92 SHTELSELKGELQRLHEENRKLRNMLDQTTKSYNDLQSQLLLAMQK 137 (501)
Q Consensus 92 ~k~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYnaLQmql~~lmQq 137 (501)
..+-+..|...++.+.++=++|..-+..+.+.+..|+.+|..++++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455678888999999999999999999999999999999887754
No 86
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.01 E-value=96 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 93 HTELSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 93 k~el~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
..++..|+.|++.+..||.||+.=.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999987664
No 87
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.93 E-value=1.5e+02 Score=25.10 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=35.5
Q ss_pred cchhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhHHHHHHHHH
Q 040711 91 KSHTELSELKGELQRLHEENR------------KLRNMLDQTTKSYNDLQSQLLL 133 (501)
Q Consensus 91 ~~k~el~~Lq~EL~Rv~eENk------------rLk~ML~~v~~nYnaLQmql~~ 133 (501)
+.-.+...|+.|+.+++.|+. ||+.=++.+.+.|..|...|..
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577889999999999985 8899999999999999888753
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.41 E-value=1.5e+02 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 040711 94 TELSELKGELQRLHEENRKLRNMLDQTTKSYND 126 (501)
Q Consensus 94 ~el~~Lq~EL~Rv~eENkrLk~ML~~v~~nYna 126 (501)
.||..|+++++.+.+++++++.-+..+.+.|..
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555544
No 89
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.95 E-value=78 Score=26.92 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 040711 95 ELSELKGELQRLHEENRKLRNMLD 118 (501)
Q Consensus 95 el~~Lq~EL~Rv~eENkrLk~ML~ 118 (501)
.+.+|++|++++++|.++||+-|.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~ 31 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVA 31 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777775443
Done!