Query 040712
Match_columns 179
No_of_seqs 125 out of 1057
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692 Putative cargo transpo 100.0 9.3E-50 2E-54 285.9 16.5 168 1-175 31-200 (201)
2 KOG1691 emp24/gp25L/p24 family 100.0 5.3E-42 1.2E-46 250.5 18.7 172 1-176 33-210 (210)
3 KOG1693 emp24/gp25L/p24 family 100.0 1.5E-40 3.3E-45 239.8 16.5 169 1-175 34-206 (209)
4 KOG1690 emp24/gp25L/p24 family 100.0 2.2E-39 4.7E-44 233.4 16.0 174 1-176 31-215 (215)
5 KOG3287 Membrane trafficking p 100.0 1.6E-35 3.5E-40 216.2 17.1 170 1-176 46-229 (236)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 8.8E-38 1.9E-42 230.8 0.8 165 1-171 12-183 (183)
7 PF01835 A2M_N: MG2 domain; I 94.8 0.54 1.2E-05 30.7 8.9 67 10-76 13-88 (99)
8 PF13897 GOLD_2: Golgi-dynamic 92.6 0.17 3.8E-06 35.3 3.5 28 58-85 104-133 (136)
9 PF09315 DUF1973: Domain of un 89.5 3.5 7.7E-05 30.4 8.1 54 32-85 41-98 (179)
10 PF04151 PPC: Bacterial pre-pe 88.5 3.4 7.4E-05 25.1 6.4 60 2-71 4-68 (70)
11 smart00557 IG_FLMN Filamin-typ 88.3 4.1 9E-05 26.3 7.0 44 31-74 31-77 (93)
12 PF13860 FlgD_ig: FlgD Ig-like 84.2 5.7 0.00012 25.0 5.9 31 12-49 12-42 (81)
13 PF11589 DUF3244: Domain of un 82.8 5.2 0.00011 26.7 5.5 45 32-76 48-96 (106)
14 PF05738 Cna_B: Cna protein B- 79.5 3.1 6.8E-05 25.1 3.3 43 33-75 3-47 (70)
15 PF07495 Y_Y_Y: Y_Y_Y domain; 78.9 11 0.00024 22.2 6.3 44 30-75 6-49 (66)
16 PF07210 DUF1416: Protein of u 78.5 13 0.00028 23.8 5.8 59 11-76 7-65 (85)
17 PRK06655 flgD flagellar basal 78.3 5.8 0.00012 30.4 5.1 43 32-74 126-179 (225)
18 PF10779 XhlA: Haemolysin XhlA 76.4 15 0.00033 22.6 7.9 16 144-159 52-67 (71)
19 PRK12812 flgD flagellar basal 76.0 8.8 0.00019 30.1 5.6 43 32-74 141-194 (259)
20 KOG3202 SNARE protein TLG1/Syn 75.6 25 0.00054 27.2 7.8 67 99-165 151-234 (235)
21 PRK12813 flgD flagellar basal 74.3 11 0.00023 28.9 5.6 43 32-75 124-175 (223)
22 PF00630 Filamin: Filamin/ABP2 73.8 21 0.00045 22.9 7.9 43 32-74 42-91 (101)
23 TIGR03503 conserved hypothetic 72.8 54 0.0012 27.2 10.3 44 30-73 240-286 (374)
24 PF13620 CarboxypepD_reg: Carb 72.2 8.7 0.00019 23.7 4.0 45 32-76 15-59 (82)
25 PRK05842 flgD flagellar basal 71.3 16 0.00034 29.3 6.0 43 32-74 166-221 (295)
26 PF04728 LPP: Lipoprotein leuc 69.2 21 0.00045 21.1 6.1 44 101-144 4-47 (56)
27 PF08114 PMP1_2: ATPase proteo 68.7 7.1 0.00015 21.4 2.5 29 150-178 14-42 (43)
28 COG5415 Predicted integral mem 66.2 42 0.0009 25.5 6.9 32 100-131 15-46 (251)
29 PF07125 DUF1378: Protein of u 65.1 12 0.00025 21.9 3.1 30 142-173 6-35 (59)
30 PF07888 CALCOCO1: Calcium bin 64.9 98 0.0021 27.1 11.3 63 11-76 19-99 (546)
31 PRK15396 murein lipoprotein; P 64.8 33 0.00072 21.7 6.0 45 100-144 25-69 (78)
32 COG1723 Uncharacterized conser 63.8 13 0.00028 30.0 4.1 55 105-165 271-325 (331)
33 PF07835 COX4_pro_2: Bacterial 63.2 24 0.00053 19.6 4.2 28 133-160 14-41 (44)
34 KOG2861 Uncharacterized conser 62.7 24 0.00052 29.5 5.7 55 105-165 338-392 (399)
35 KOG0518 Actin-binding cytoskel 61.9 19 0.0004 33.7 5.2 46 30-75 881-929 (1113)
36 PRK14081 triple tyrosine motif 60.6 63 0.0014 29.0 8.2 54 32-86 416-476 (667)
37 PRK09619 flgD flagellar basal 60.1 31 0.00068 26.3 5.6 43 32-75 123-173 (218)
38 PRK12633 flgD flagellar basal 59.9 70 0.0015 24.6 7.5 43 32-74 129-182 (230)
39 PRK09973 putative outer membra 59.8 44 0.00096 21.5 5.9 47 100-146 24-70 (85)
40 KOG2678 Predicted membrane pro 59.3 80 0.0017 24.3 8.1 32 142-173 212-243 (244)
41 PF09323 DUF1980: Domain of un 59.1 16 0.00035 26.8 3.9 33 140-172 27-59 (182)
42 PF12669 P12: Virus attachment 58.3 9.3 0.0002 22.7 2.0 9 166-174 17-25 (58)
43 PRK12634 flgD flagellar basal 58.2 51 0.0011 25.2 6.5 43 32-74 122-175 (221)
44 PF15417 DUF4624: Domain of un 57.0 59 0.0013 22.1 6.9 54 34-87 62-122 (132)
45 PF09577 Spore_YpjB: Sporulati 55.9 94 0.002 24.0 8.7 26 144-169 198-223 (232)
46 PF01519 DUF16: Protein of unk 54.3 61 0.0013 21.6 5.4 43 102-144 55-97 (102)
47 PF08372 PRT_C: Plant phosphor 53.4 84 0.0018 22.7 7.9 54 97-150 49-102 (156)
48 PF12690 BsuPI: Intracellular 53.0 40 0.00086 21.4 4.4 21 30-50 22-42 (82)
49 COG5415 Predicted integral mem 52.1 1E+02 0.0023 23.5 8.7 49 99-154 7-55 (251)
50 PHA02650 hypothetical protein; 51.7 24 0.00052 22.3 3.0 32 138-169 42-73 (81)
51 PF05739 SNARE: SNARE domain; 51.6 47 0.001 19.3 5.4 45 100-144 4-48 (63)
52 PF05377 FlaC_arch: Flagella a 51.4 49 0.0011 19.4 5.6 30 102-131 2-31 (55)
53 PF10648 Gmad2: Immunoglobulin 50.7 38 0.00082 21.8 4.1 38 8-49 8-46 (88)
54 PF10528 PA14_2: GLEYA domain; 50.6 38 0.00082 23.0 4.2 39 5-49 64-102 (113)
55 PF03554 Herpes_UL73: UL73 vir 50.6 34 0.00075 21.9 3.7 27 140-166 45-71 (82)
56 PF10754 DUF2569: Protein of u 48.2 64 0.0014 22.9 5.3 33 146-178 54-86 (149)
57 TIGR02878 spore_ypjB sporulati 48.2 58 0.0013 25.1 5.3 25 141-165 196-220 (233)
58 PF04136 Sec34: Sec34-like fam 48.1 1E+02 0.0022 22.1 7.1 53 102-154 30-82 (157)
59 PF00517 GP41: Retroviral enve 47.2 1E+02 0.0022 23.2 6.6 59 103-161 104-168 (204)
60 PRK14081 triple tyrosine motif 46.8 97 0.0021 27.9 7.1 43 32-74 223-265 (667)
61 PHA03054 IMV membrane protein; 46.7 35 0.00076 21.1 3.2 28 140-167 43-70 (72)
62 PHA02819 hypothetical protein; 45.9 43 0.00094 20.6 3.5 28 140-167 41-68 (71)
63 PF14654 Epiglycanin_C: Mucin, 45.4 53 0.0011 21.7 4.0 34 144-177 20-53 (106)
64 PHA02975 hypothetical protein; 44.8 50 0.0011 20.3 3.6 28 141-168 40-67 (69)
65 PF14524 Wzt_C: Wzt C-terminal 44.7 46 0.00099 22.5 4.1 58 11-72 34-91 (142)
66 PHA03163 hypothetical protein; 44.3 69 0.0015 20.7 4.4 28 139-166 53-80 (92)
67 TIGR02962 hdxy_isourate hydrox 43.3 89 0.0019 21.2 5.1 13 63-75 56-68 (112)
68 PF10805 DUF2730: Protein of u 42.5 70 0.0015 21.3 4.5 48 97-144 32-88 (106)
69 PRK14163 heat shock protein Gr 42.4 1.4E+02 0.003 22.8 6.5 46 101-146 48-93 (214)
70 PF08234 Spindle_Spc25: Chromo 42.4 81 0.0018 19.4 5.6 29 61-89 3-33 (74)
71 PF14109 GldH_lipo: GldH lipop 42.3 88 0.0019 21.7 5.2 13 62-74 103-115 (131)
72 PRK01844 hypothetical protein; 41.1 86 0.0019 19.5 4.3 26 147-172 6-31 (72)
73 PF13544 N_methyl_2: Type IV p 40.3 36 0.00078 17.2 2.2 20 141-160 10-29 (31)
74 PRK00523 hypothetical protein; 40.2 92 0.002 19.4 4.4 27 146-172 6-32 (72)
75 PF05371 Phage_Coat_Gp8: Phage 40.0 55 0.0012 18.9 3.1 22 151-172 30-51 (52)
76 PRK14155 heat shock protein Gr 39.3 1.7E+02 0.0037 22.2 7.2 42 101-142 21-62 (208)
77 PHA02844 putative transmembran 39.2 59 0.0013 20.3 3.4 25 143-167 46-70 (75)
78 PF13473 Cupredoxin_1: Cupredo 39.0 1.1E+02 0.0024 19.9 5.5 16 54-69 75-90 (104)
79 PF09753 Use1: Membrane fusion 38.4 1.9E+02 0.004 22.4 8.5 20 146-166 228-247 (251)
80 PF00957 Synaptobrevin: Synapt 38.0 1E+02 0.0023 19.4 10.0 34 114-147 31-64 (89)
81 PF05753 TRAP_beta: Translocon 37.9 1.6E+02 0.0036 21.7 6.8 26 10-40 36-61 (181)
82 PRK14143 heat shock protein Gr 37.9 1.8E+02 0.004 22.5 6.7 38 102-139 76-113 (238)
83 TIGR00383 corA magnesium Mg(2+ 37.8 2E+02 0.0044 22.7 8.9 22 135-156 249-270 (318)
84 PRK14149 heat shock protein Gr 36.9 1.8E+02 0.0039 21.8 7.1 44 99-142 42-85 (191)
85 PHA03156 hypothetical protein; 36.8 1E+02 0.0023 19.9 4.3 28 139-166 52-79 (90)
86 PF07963 N_methyl: Prokaryotic 35.7 40 0.00087 15.4 1.7 13 147-159 3-15 (20)
87 PRK14139 heat shock protein Gr 35.6 1.9E+02 0.004 21.6 6.5 49 101-149 40-88 (185)
88 PF10805 DUF2730: Protein of u 35.2 50 0.0011 22.0 2.9 27 145-171 7-33 (106)
89 PRK14156 heat shock protein Gr 35.0 1.9E+02 0.004 21.4 6.5 44 99-142 33-76 (177)
90 PF07116 DUF1372: Protein of u 34.8 76 0.0017 21.1 3.6 30 138-167 6-35 (104)
91 PF04678 DUF607: Protein of un 34.4 1.9E+02 0.004 21.2 9.5 44 106-149 56-99 (180)
92 PF05015 Plasmid_killer: Plasm 34.2 82 0.0018 20.3 3.8 35 41-77 49-83 (93)
93 PF14686 fn3_3: Polysaccharide 34.0 1.4E+02 0.0029 19.5 5.0 62 12-74 3-69 (95)
94 PRK14161 heat shock protein Gr 33.5 2E+02 0.0043 21.3 6.7 44 100-143 26-69 (178)
95 PF11166 DUF2951: Protein of u 33.2 1.4E+02 0.0031 19.6 8.5 37 132-170 60-96 (98)
96 PF07086 DUF1352: Protein of u 32.8 1.8E+02 0.0039 21.7 5.7 35 126-160 19-53 (186)
97 COG0598 CorA Mg2+ and Co2+ tra 31.9 2.7E+02 0.0059 22.4 7.2 55 106-160 219-278 (322)
98 PF06156 DUF972: Protein of un 31.6 1.6E+02 0.0035 19.7 5.4 38 102-139 10-47 (107)
99 PF08537 NBP1: Fungal Nap bind 31.4 1.4E+02 0.003 24.3 5.2 41 101-141 183-223 (323)
100 KOG0518 Actin-binding cytoskel 31.3 1.7E+02 0.0038 27.8 6.4 58 11-74 375-436 (1113)
101 PRK14157 heat shock protein Gr 31.2 2.5E+02 0.0054 21.7 6.7 44 100-143 84-127 (227)
102 PRK14164 heat shock protein Gr 31.2 2.4E+02 0.0052 21.6 7.2 52 99-150 76-127 (218)
103 PF09889 DUF2116: Uncharacteri 31.2 1.2E+02 0.0026 18.0 5.0 12 141-152 37-48 (59)
104 PRK10803 tol-pal system protei 31.1 1.1E+02 0.0025 23.9 4.8 39 100-138 61-99 (263)
105 cd05860 Ig4_SCFR Fourth immuno 31.1 86 0.0019 20.8 3.5 26 61-87 74-99 (101)
106 PF09116 gp45-slide_C: gp45 sl 30.7 87 0.0019 21.3 3.5 40 35-74 25-72 (112)
107 PRK14147 heat shock protein Gr 30.6 2.2E+02 0.0047 20.9 7.1 46 101-146 26-71 (172)
108 PRK14154 heat shock protein Gr 30.4 2.4E+02 0.0053 21.4 7.3 49 101-149 60-108 (208)
109 PRK14151 heat shock protein Gr 30.3 2.2E+02 0.0048 20.9 6.5 41 101-141 28-68 (176)
110 PF13260 DUF4051: Protein of u 29.8 99 0.0022 17.6 3.0 18 153-170 9-26 (54)
111 COG2373 Large extracellular al 29.6 3.8E+02 0.0083 27.1 8.7 66 10-75 407-479 (1621)
112 COG4467 Regulator of replicati 29.5 1.8E+02 0.0039 19.6 5.0 44 101-144 9-52 (114)
113 PF09125 COX2-transmemb: Cytoc 29.3 99 0.0021 16.5 5.2 29 133-161 5-33 (38)
114 PF01483 P_proprotein: Proprot 29.3 1.5E+02 0.0032 18.5 4.5 54 14-73 4-70 (87)
115 PHA02955 hypothetical protein; 29.2 69 0.0015 24.4 3.0 27 146-173 180-206 (213)
116 PF13314 DUF4083: Domain of un 29.2 53 0.0011 19.5 1.9 22 96-117 35-56 (58)
117 PF10256 Erf4: Golgin subfamil 29.0 1.8E+02 0.0039 19.4 5.2 32 141-172 50-81 (118)
118 KOG1924 RhoA GTPase effector D 28.9 1.4E+02 0.003 27.7 5.2 50 107-156 365-414 (1102)
119 PF03061 4HBT: Thioesterase su 28.9 1.2E+02 0.0026 17.9 3.8 38 4-46 41-78 (79)
120 PF14257 DUF4349: Domain of un 28.7 2.6E+02 0.0057 21.6 6.4 30 102-131 164-193 (262)
121 TIGR02542 B_forsyth_147 Bacter 28.7 35 0.00075 23.4 1.3 13 63-75 115-127 (145)
122 PRK14158 heat shock protein Gr 28.5 2.6E+02 0.0055 21.0 6.6 45 102-146 49-93 (194)
123 PF11044 TMEMspv1-c74-12: Plec 28.1 1.1E+02 0.0025 17.0 3.0 17 146-162 8-27 (49)
124 PRK14159 heat shock protein Gr 27.4 2.6E+02 0.0055 20.6 6.7 43 99-141 29-71 (176)
125 PF04109 APG9: Autophagy prote 27.4 1.5E+02 0.0033 24.6 5.0 36 130-165 107-142 (370)
126 cd05864 Ig2_VEGFR-2 Second imm 27.3 85 0.0018 18.9 2.8 24 62-85 44-68 (70)
127 PF14235 DUF4337: Domain of un 26.8 2.5E+02 0.0053 20.2 8.6 66 103-168 69-134 (157)
128 PF03408 Foamy_virus_ENV: Foam 26.8 2.4E+02 0.0052 26.2 6.3 42 127-168 44-85 (981)
129 PF05399 EVI2A: Ectropic viral 26.6 1.3E+02 0.0028 22.9 4.1 40 135-174 119-169 (227)
130 cd09011 Glo_EDI_BRP_like_23 Th 26.6 56 0.0012 21.4 2.1 16 33-48 101-116 (120)
131 COG4676 Uncharacterized protei 26.5 1.4E+02 0.0031 22.9 4.2 43 30-72 152-209 (268)
132 cd08356 Glo_EDI_BRP_like_17 Th 26.3 55 0.0012 21.4 2.0 15 33-47 96-110 (113)
133 PF11598 COMP: Cartilage oligo 26.3 1.3E+02 0.0028 16.9 5.7 35 104-138 5-39 (45)
134 PF01166 TSC22: TSC-22/dip/bun 26.0 1.5E+02 0.0033 17.6 4.3 32 97-128 11-42 (59)
135 cd04976 Ig2_VEGFR Second immun 25.9 95 0.0021 18.4 2.9 24 62-85 45-69 (71)
136 TIGR01837 PHA_granule_1 poly(h 25.8 48 0.001 22.6 1.6 25 96-120 92-116 (118)
137 PRK14145 heat shock protein Gr 25.8 2.9E+02 0.0063 20.8 6.6 42 102-143 54-95 (196)
138 PF08918 PhoQ_Sensor: PhoQ Sen 25.8 31 0.00067 25.2 0.7 41 34-74 75-118 (180)
139 PRK14153 heat shock protein Gr 25.5 2.9E+02 0.0064 20.7 6.8 41 100-140 40-80 (194)
140 PF02460 Patched: Patched fami 25.2 2.2E+02 0.0048 26.1 6.1 45 128-172 730-774 (798)
141 PF06196 DUF997: Protein of un 25.1 1.9E+02 0.0041 18.3 4.3 27 146-172 45-71 (80)
142 PF11797 DUF3324: Protein of u 24.9 1.4E+02 0.003 20.8 3.9 46 31-76 60-117 (140)
143 PF14584 DUF4446: Protein of u 24.8 1.6E+02 0.0035 21.1 4.2 42 100-141 39-80 (151)
144 PF08329 ChitinaseA_N: Chitina 24.8 2E+02 0.0044 20.1 4.6 54 11-72 37-90 (133)
145 PRK13169 DNA replication intia 24.5 2.3E+02 0.005 19.1 5.4 40 102-141 10-49 (110)
146 PF09425 CCT_2: Divergent CCT 24.2 39 0.00084 16.8 0.7 10 165-174 7-16 (27)
147 PF10670 DUF4198: Domain of un 24.0 2.6E+02 0.0056 20.4 5.5 19 53-71 191-209 (215)
148 KOG2604 Subunit of cis-Golgi t 24.0 2.5E+02 0.0054 25.4 5.9 49 105-153 124-172 (733)
149 PF07680 DoxA: TQO small subun 24.0 2.5E+02 0.0053 19.7 4.9 60 11-73 28-96 (133)
150 PF04178 Got1: Got1/Sft2-like 23.9 1.1E+02 0.0023 20.8 3.1 36 142-177 25-62 (118)
151 PF08842 Mfa2: Fimbrillin-A as 23.8 70 0.0015 24.5 2.4 43 31-73 28-76 (283)
152 PRK14141 heat shock protein Gr 23.8 3.3E+02 0.0072 20.7 7.2 41 101-141 39-79 (209)
153 cd07628 BAR_Atg24p The Bin/Amp 23.6 3E+02 0.0066 20.2 6.0 53 101-153 5-57 (185)
154 cd07666 BAR_SNX7 The Bin/Amphi 23.5 2.5E+02 0.0054 21.9 5.3 54 100-153 54-107 (243)
155 PF13715 DUF4480: Domain of un 23.4 1.9E+02 0.0041 17.8 5.9 40 32-76 16-55 (88)
156 KOG0256 1-aminocyclopropane-1- 23.3 49 0.0011 28.0 1.4 19 58-76 427-445 (471)
157 COG4062 MtrB Tetrahydromethano 23.2 1.1E+02 0.0023 20.4 2.7 23 101-123 32-54 (108)
158 PF12932 Sec16: Vesicle coat t 23.2 2E+02 0.0043 19.4 4.3 42 107-154 72-113 (118)
159 KOG3091 Nuclear pore complex, 23.0 3.6E+02 0.0077 23.4 6.4 47 104-150 352-398 (508)
160 PF01025 GrpE: GrpE; InterPro 23.0 2.8E+02 0.0061 19.6 7.3 40 99-138 17-56 (165)
161 PRK06798 fliD flagellar cappin 22.9 4.8E+02 0.01 22.2 7.9 12 162-173 426-437 (440)
162 PF08651 DASH_Duo1: DASH compl 22.8 2.1E+02 0.0045 18.0 7.3 43 108-150 9-51 (78)
163 COG0576 GrpE Molecular chapero 22.7 3.3E+02 0.0072 20.3 7.4 45 101-145 44-88 (193)
164 PHA02692 hypothetical protein; 22.5 1.5E+02 0.0032 18.3 3.1 16 152-167 53-68 (70)
165 TIGR02532 IV_pilin_GFxxxE prep 22.5 80 0.0017 15.2 1.6 14 147-160 4-17 (26)
166 PF09771 Tmemb_18A: Transmembr 22.3 2.8E+02 0.006 19.3 5.5 44 123-166 6-49 (125)
167 COG4932 Predicted outer membra 21.9 2E+02 0.0043 28.1 5.1 68 7-74 1147-1215(1531)
168 PF05644 Miff: Mitochondrial a 21.9 2.7E+02 0.0059 21.7 5.2 28 104-131 199-226 (246)
169 COG1382 GimC Prefoldin, chaper 21.9 2.8E+02 0.006 19.1 4.7 41 99-139 69-109 (119)
170 COG1585 Membrane protein impli 21.9 1.4E+02 0.0031 21.0 3.4 24 150-173 49-72 (140)
171 PRK00965 tetrahydromethanopter 21.9 1.1E+02 0.0025 20.1 2.7 23 101-123 32-54 (96)
172 PF07523 Big_3: Bacterial Ig-l 21.8 1.9E+02 0.0041 17.1 5.7 42 32-75 17-58 (67)
173 PRK13415 flagella biosynthesis 21.7 1.5E+02 0.0032 22.7 3.7 36 138-173 57-92 (219)
174 PF05440 MtrB: Tetrahydrometha 21.5 1.2E+02 0.0026 20.1 2.7 23 101-123 31-53 (97)
175 cd03455 SAV4209 SAV4209 is a S 21.1 2.6E+02 0.0057 18.5 5.2 41 5-49 78-118 (123)
176 PHA01750 hypothetical protein 20.9 2E+02 0.0043 17.5 3.3 29 143-171 4-33 (75)
177 cd08350 BLMT_like BLMT, a bleo 20.8 84 0.0018 20.6 2.1 15 33-47 101-115 (120)
178 PRK15036 hydroxyisourate hydro 20.5 3.1E+02 0.0068 19.2 5.2 58 16-75 29-93 (137)
179 PF04234 CopC: CopC domain; I 20.5 93 0.002 20.1 2.2 44 32-75 33-82 (97)
180 cd07261 Glo_EDI_BRP_like_11 Th 20.3 88 0.0019 20.1 2.1 13 34-46 98-110 (114)
181 PF06624 RAMP4: Ribosome assoc 20.3 52 0.0011 19.9 0.8 23 144-166 38-60 (63)
182 PRK14160 heat shock protein Gr 20.2 4E+02 0.0087 20.3 6.5 37 102-138 70-106 (211)
183 cd07235 MRD Mitomycin C resist 20.1 80 0.0017 20.6 1.8 13 34-46 106-118 (122)
184 PF12911 OppC_N: N-terminal TM 20.1 1.4E+02 0.003 16.8 2.7 21 142-162 15-35 (56)
No 1
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-50 Score=285.94 Aligned_cols=168 Identities=35% Similarity=0.544 Sum_probs=162.1
Q ss_pred CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCC--Cc
Q 040712 1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSP--YH 78 (179)
Q Consensus 1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s--~~ 78 (179)
+||+|++. +|+.+.++|+|.+|| ..++++.|++|+|+.++..++.++|+|+|+++.+|.|++||+|..| +|
T Consensus 31 eCf~e~~~-~gd~~~vsF~v~~gg------~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~s~mtp 103 (201)
T KOG1692|consen 31 ECFFENLE-EGDKLSVSFEVIDGG------FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKMSTMTP 103 (201)
T ss_pred hhHhhhhc-cCCEEEEEEEEecCC------ccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCCCCCCc
Confidence 69999999 799999999999986 5799999999999999999988999999999999999999999998 59
Q ss_pred eeeEEEEEecccCCCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHH
Q 040712 79 ETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITA 158 (179)
Q Consensus 79 ~~V~f~~~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~ 158 (179)
|.|.|++++|+.+..++.+++++.++|++.+++|.+.|..++.||+|+..|+++||.++|+||+||+|||++|.++||++
T Consensus 104 k~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~ 183 (201)
T KOG1692|consen 104 KTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAM 183 (201)
T ss_pred eEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHH
Confidence 99999999999987778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccC
Q 040712 159 SFLQIHLLKRLFDRKQG 175 (179)
Q Consensus 159 ~~~Qv~~lk~fF~~k~~ 175 (179)
+++|||||||||++|++
T Consensus 184 s~~QVyYLkRfFEvkrv 200 (201)
T KOG1692|consen 184 SVLQVYYLKRFFEVKRV 200 (201)
T ss_pred HHHHHHHHHHhheeeec
Confidence 99999999999999986
No 2
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-42 Score=250.47 Aligned_cols=172 Identities=22% Similarity=0.381 Sum_probs=159.1
Q ss_pred CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcC--CCC-
Q 040712 1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNK--SPY- 77 (179)
Q Consensus 1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~--~s~- 77 (179)
+|+.|++. +|..+.|.|.+.+.... ....+++.|+||.|+.+++.++.++|+|+|++.+.|.|.+||.+. ...
T Consensus 33 kCi~EeI~-~n~lv~g~y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p 108 (210)
T KOG1691|consen 33 KCISEEIH-ENVLVVGDYEIINPNGD---HSHKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYEACFTADVPGHKP 108 (210)
T ss_pred Eeehhhhc-cCeEEEEEEEEecCCCC---ccceEEEEEEcCCCceeehhhccccceEEEEeccCCcEEEEEecccCCCCC
Confidence 59999999 69999999999975421 115799999999999999999999999999999999999999993 332
Q ss_pred --ceeeEEEEEecccC-CCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHH
Q 040712 78 --HETPDFDIHVAHYA-YHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFF 154 (179)
Q Consensus 78 --~~~V~f~~~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v 154 (179)
...|+|++..|.++ ||+++||+++++|++.++++|++.+..|+++.-|+|.||+++|+++|+||+||.|+|++.+++
T Consensus 109 ~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi~Sl~v 188 (210)
T KOG1691|consen 109 ETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSILSLVV 188 (210)
T ss_pred CcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 37899999999876 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q 040712 155 LITASFLQIHLLKRLFDRKQGL 176 (179)
Q Consensus 155 li~~~~~Qv~~lk~fF~~k~~~ 176 (179)
++++++||++|||+||++||++
T Consensus 189 ~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 189 LLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999974
No 3
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-40 Score=239.81 Aligned_cols=169 Identities=20% Similarity=0.338 Sum_probs=154.0
Q ss_pred CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCCC--c
Q 040712 1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPY--H 78 (179)
Q Consensus 1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s~--~ 78 (179)
+|||+++++.++.++..|+|..||+ .+|++.|++|+|++++...++..+.|.|++...|+|++||+|.+|+ +
T Consensus 34 qC~Y~d~~~~~~~~~~~fqV~tGG~------fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN~fstf~~ 107 (209)
T KOG1693|consen 34 QCFYEDLKKDDDTTSFEFQVQTGGH------FDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSNEFSTFSH 107 (209)
T ss_pred hheeeecccCCceEEEEEEEEeCCc------eeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecCccccccc
Confidence 6999999965566999999999985 4999999999999999999999999999999999999999999985 7
Q ss_pred eeeEEEEEecccCCCCcc--ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHH
Q 040712 79 ETPDFDIHVAHYAYHDQH--AKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLI 156 (179)
Q Consensus 79 ~~V~f~~~~~~~~~~~~~--a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli 156 (179)
|.|.++++.|.+.+..+. +.+...+.++..+..+++.|+.|.+.|.|.|.||++.+.+++++++||+|||++++++++
T Consensus 108 Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv 187 (209)
T KOG1693|consen 108 KIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLLEIIAVV 187 (209)
T ss_pred eEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHHHHHHHH
Confidence 999999999977643322 233456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 040712 157 TASFLQIHLLKRLFDRKQG 175 (179)
Q Consensus 157 ~~~~~Qv~~lk~fF~~k~~ 175 (179)
++++.||+.||.||..|+.
T Consensus 188 ~iSi~Qv~ilk~fFt~~r~ 206 (209)
T KOG1693|consen 188 VISIAQVFILKFFFTDRRK 206 (209)
T ss_pred HHHHHHHHHHHHHHhccCc
Confidence 9999999999999998875
No 4
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-39 Score=233.39 Aligned_cols=174 Identities=18% Similarity=0.259 Sum_probs=150.3
Q ss_pred CcceeeecCCCcEEEEEEEEEeCCC---CC-CCCCCceEEEEECCCCC--eeecccceeeeeEEEEcccccceeEeEEcC
Q 040712 1 KKVSHNVECEGDTLHCSFVVVKADN---PW-HYSDEGVELTVTGPSDE--RVRDFDRRSTATFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 1 ~Cf~e~v~~~~~~i~~~y~v~~~~~---~~-~~~~~~i~~~v~~P~g~--~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~ 74 (179)
+||++++| +++.+.|+|.+.--+. .| ..++.++.+.|.+|.++ +|+++...++|+|+|++..+|+|+||+.+.
T Consensus 31 KCF~eelp-k~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~ 109 (215)
T KOG1690|consen 31 KCFIEELP-KGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSN 109 (215)
T ss_pred cchhhhCC-CCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecc
Confidence 79999999 6999999999864221 12 24578899999999655 999999999999999999999999999866
Q ss_pred CC-----CceeeEEEEEecccCCCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH
Q 040712 75 SP-----YHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAM 149 (179)
Q Consensus 75 ~s-----~~~~V~f~~~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si 149 (179)
.+ +..+|.+++.+|..+..+ ...++..+.++.++..|++.+..|+.||.++|.||.++|++.||+|+|++|||+
T Consensus 110 s~awf~~aklRvhld~qvG~~a~l~-a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv 188 (215)
T KOG1690|consen 110 STAWFNGAKLRVHLDIQVGDHANLD-AQIKETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSV 188 (215)
T ss_pred cchhhccceEEEEEEEeeCchhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhH
Confidence 43 256899999999765221 123466788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 040712 150 LGSFFLITASFLQIHLLKRLFDRKQGL 176 (179)
Q Consensus 150 ~~i~vli~~~~~Qv~~lk~fF~~k~~~ 176 (179)
+|++||+++|+||+.+||+||.++|++
T Consensus 189 ~Q~vvL~~tc~wQmrhL~~FFvkqKlv 215 (215)
T KOG1690|consen 189 AQLVVLLVTCIWQMRHLKSFFVKQKLV 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999974
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=216.15 Aligned_cols=170 Identities=19% Similarity=0.320 Sum_probs=149.9
Q ss_pred CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCCC--c
Q 040712 1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPY--H 78 (179)
Q Consensus 1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s~--~ 78 (179)
+|||+.++ .+..+..+|+|++|. ++.+|+|++.+|.|.++.+...+..|.+++.+.+.|.|++||+|++|+ .
T Consensus 46 eCf~Q~v~-~~~tle~eyQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDNsFS~fs~ 119 (236)
T KOG3287|consen 46 ECFYQPVP-QGATLEVEYQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDNSFSTFSR 119 (236)
T ss_pred eeeeeecc-CCeEEEEEEEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcCccccccc
Confidence 69999999 599999999999982 257999999999999999998899999999999999999999999995 7
Q ss_pred eeeEEEEEeccc---C----CCCcccc-----ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 040712 79 ETPDFDIHVAHY---A----YHDQHAK-----DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY 146 (179)
Q Consensus 79 ~~V~f~~~~~~~---~----~~~~~a~-----~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 146 (179)
|.|.|++-+... . .|.+..+ .-.++.+++.+..+.++|..+...|..+|+||.|+|.+.+++..||.|
T Consensus 120 K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~ 199 (236)
T KOG3287|consen 120 KLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNF 199 (236)
T ss_pred eEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhH
Confidence 999999954321 1 1222222 135678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 040712 147 KAMLGSFFLITASFLQIHLLKRLFDRKQGL 176 (179)
Q Consensus 147 ~si~~i~vli~~~~~Qv~~lk~fF~~k~~~ 176 (179)
||++|+++||+++++|+++|||+|+.|+..
T Consensus 200 WS~vq~~vmi~v~~iQVf~lrslFe~~~~~ 229 (236)
T KOG3287|consen 200 WSMVQTLVMILVGIIQVFMLRSLFEVKSKS 229 (236)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence 999999999999999999999999988654
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=8.8e-38 Score=230.83 Aligned_cols=165 Identities=27% Similarity=0.467 Sum_probs=5.6
Q ss_pred CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEE--CCCCCeeeccccee-eeeEEEEcccccceeEeEEcCCCC
Q 040712 1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVT--GPSDERVRDFDRRS-TATFEFVAYKKGLYKFCFTNKSPY 77 (179)
Q Consensus 1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~--~P~g~~v~~~~~~~-~g~f~f~~~~~G~y~~Cf~n~~s~ 77 (179)
+||+++++ +++.+.|+|.+.+++. ..++++.|+ +|+|+.++...+.. +|.|+|+++++|+|++||+|+.+.
T Consensus 12 ~Cf~e~v~-~~~~i~~~y~v~~~~~-----~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~ 85 (183)
T PF01105_consen 12 ECFYEEVP-KGTTIRGSYRVTDGGG-----AYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFDNSSSS 85 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEcC-CCcEEEEEEEEeeccc-----cceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEEcCCCC
Confidence 69999999 5999999999998761 358999999 56669999886554 579999999999999999999874
Q ss_pred --c-eeeEEEEEecccC-CCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHH
Q 040712 78 --H-ETPDFDIHVAHYA-YHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSF 153 (179)
Q Consensus 78 --~-~~V~f~~~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~ 153 (179)
+ +.|+|++++|.+. +..+.++++++++++..|++|.+.+..|.++|+|++.|+.+|+.++++++.|+++|++++++
T Consensus 86 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~si~~~~ 165 (183)
T PF01105_consen 86 FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWSIIQIV 165 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHHHHHHH
Confidence 4 8999999998653 45667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 040712 154 FLITASFLQIHLLKRLFD 171 (179)
Q Consensus 154 vli~~~~~Qv~~lk~fF~ 171 (179)
+++++++||+++||+||+
T Consensus 166 vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 166 VLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp ------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999999996
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.78 E-value=0.54 Score=30.74 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=43.1
Q ss_pred CCcEEEEEEEEEeCCC-CCCCCCCceEEEEECCCCCeeecccc-e--eeeeEEEE--cc---cccceeEeEEcCCC
Q 040712 10 EGDTLHCSFVVVKADN-PWHYSDEGVELTVTGPSDERVRDFDR-R--STATFEFV--AY---KKGLYKFCFTNKSP 76 (179)
Q Consensus 10 ~~~~i~~~y~v~~~~~-~~~~~~~~i~~~v~~P~g~~v~~~~~-~--~~g~f~f~--~~---~~G~y~~Cf~n~~s 76 (179)
+|+.|.+...+.+.++ ..++.+..+.+.|.||+|+.+..... . ..|.+++. .+ ..|.|++=+....+
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~ 88 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD 88 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence 5788888887766542 22345678999999999998877544 1 24443332 22 35999998887543
No 8
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=92.62 E-value=0.17 Score=35.28 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.0
Q ss_pred EEEcccccceeEeEEcCCC--CceeeEEEE
Q 040712 58 EFVAYKKGLYKFCFTNKSP--YHETPDFDI 85 (179)
Q Consensus 58 ~f~~~~~G~y~~Cf~n~~s--~~~~V~f~~ 85 (179)
+++.+..|.|-++|+|++| ..|++.+.+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence 3566799999999999998 378887765
No 9
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=89.53 E-value=3.5 Score=30.42 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=34.3
Q ss_pred CceEEEEECCCCCeeec-ccceeeeeEEEEc---ccccceeEeEEcCCCCceeeEEEE
Q 040712 32 EGVELTVTGPSDERVRD-FDRRSTATFEFVA---YKKGLYKFCFTNKSPYHETPDFDI 85 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~-~~~~~~g~f~f~~---~~~G~y~~Cf~n~~s~~~~V~f~~ 85 (179)
....+.+++|+|+.+.. ..+.......+.. .+.|.+++.+.|..+.+..+.+.+
T Consensus 41 ~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~~q~v~vtV 98 (179)
T PF09315_consen 41 SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSSSQTVTVTV 98 (179)
T ss_pred CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCCcceEEEEE
Confidence 36788899999998866 1122233333333 568999999987765444444443
No 10
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=88.47 E-value=3.4 Score=25.11 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=39.9
Q ss_pred cceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccce-----eeeeEEEEcccccceeEeE
Q 040712 2 KVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRR-----STATFEFVAYKKGLYKFCF 71 (179)
Q Consensus 2 Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~-----~~g~f~f~~~~~G~y~~Cf 71 (179)
.|.-.++ ++..+++.. .... .+.++.+++++|..+...... ......|+++.+|.|-+=+
T Consensus 4 ~y~f~v~-ag~~l~i~l--~~~~-------~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 4 YYSFTVP-AGGTLTIDL--SGGS-------GDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEES-TTEEEEEEE--CETT-------SSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEc-CCCEEEEEE--cCCC-------CCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 3566788 587776553 3222 278899999998777663211 2345778889999998744
No 11
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=88.28 E-value=4.1 Score=26.33 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcC
Q 040712 31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~ 74 (179)
...+.+.|.+|+|+.+.-. .+...| ..+|+....|.|.+.+.-.
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~ 77 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFG 77 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEEC
Confidence 4689999999999654332 122233 4667788888888888754
No 12
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=84.19 E-value=5.7 Score=25.01 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=23.5
Q ss_pred cEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc
Q 040712 12 DTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF 49 (179)
Q Consensus 12 ~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~ 49 (179)
..+.+.|.+..+. ..+.+.|+|.+|++|++.
T Consensus 12 ~~~~~~~~l~~~a-------~~v~v~I~d~~G~~V~t~ 42 (81)
T PF13860_consen 12 TKGSIEYTLPEDA-------DNVTVTIYDSNGQVVRTI 42 (81)
T ss_dssp CEEEEEEEECSSC-------EEEEEEEEETTS-EEEEE
T ss_pred EEEEEEEeCCCcc-------cEEEEEEEcCCCCEEEEE
Confidence 4677777776543 379999999999999874
No 13
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=82.76 E-value=5.2 Score=26.65 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=30.4
Q ss_pred CceEEEEECCCCCeeeccccee--e--eeEEEEcccccceeEeEEcCCC
Q 040712 32 EGVELTVTGPSDERVRDFDRRS--T--ATFEFVAYKKGLYKFCFTNKSP 76 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~--~--g~f~f~~~~~G~y~~Cf~n~~s 76 (179)
..+.++|.|-+|+++|+..-.. . -.+.......|.|.+=+.+...
T Consensus 48 ~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 48 GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 4799999999999999873222 2 2444444578999999988765
No 14
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=79.46 E-value=3.1 Score=25.09 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=34.0
Q ss_pred ceEEEEECCCCCeeec--ccceeeeeEEEEcccccceeEeEEcCC
Q 040712 33 GVELTVTGPSDERVRD--FDRRSTATFEFVAYKKGLYKFCFTNKS 75 (179)
Q Consensus 33 ~i~~~v~~P~g~~v~~--~~~~~~g~f~f~~~~~G~y~~Cf~n~~ 75 (179)
++.|.+++.++..+.. ..-...|.+.|.--..|.|.+=.....
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP 47 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAP 47 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECC
Confidence 6889999998887765 333358999999889999999888743
No 15
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=78.85 E-value=11 Score=22.25 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCC
Q 040712 30 SDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKS 75 (179)
Q Consensus 30 ~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~ 75 (179)
.+......+.+.+++-+....... .++|+...+|.|++-+....
T Consensus 6 ~~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 6 ENIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp TTEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEE
T ss_pred CceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEEC
Confidence 345667778887777665543322 89999999999999998654
No 16
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=78.51 E-value=13 Score=23.84 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=39.3
Q ss_pred CcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCC
Q 040712 11 GDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSP 76 (179)
Q Consensus 11 ~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s 76 (179)
.+.|+|... .+|+. -.+--+.+.|++|+.--.-.-..+|+|.|-+ .+|.+++=--.+..
T Consensus 7 e~VItG~V~-~~G~P-----v~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g 65 (85)
T PF07210_consen 7 ETVITGRVT-RDGEP-----VGGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGG 65 (85)
T ss_pred eEEEEEEEe-cCCcC-----CCCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCC
Confidence 566666665 33331 2466788899999875444444689999987 67888876665543
No 17
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=78.28 E-value=5.8 Score=30.44 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=31.8
Q ss_pred CceEEEEECCCCCeeeccc--ceeeeeEEEEc---------ccccceeEeEEcC
Q 040712 32 EGVELTVTGPSDERVRDFD--RRSTATFEFVA---------YKKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~--~~~~g~f~f~~---------~~~G~y~~Cf~n~ 74 (179)
..+.+.|+|.+|++|++.. ..+.|.+.|+- ..+|.|++=+...
T Consensus 126 ~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 126 DNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred cEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 4799999999999998642 23467777732 3478999988755
No 18
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=76.38 E-value=15 Score=22.56 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 040712 144 AIYKAMLGSFFLITAS 159 (179)
Q Consensus 144 v~~~si~~i~vli~~~ 159 (179)
-.|+.++..++..+++
T Consensus 52 W~~r~iiGaiI~~i~~ 67 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIY 67 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444433
No 19
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=76.00 E-value=8.8 Score=30.13 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=31.9
Q ss_pred CceEEEEECCCCCeeeccc--ceeeeeEEEEcc---------cccceeEeEEcC
Q 040712 32 EGVELTVTGPSDERVRDFD--RRSTATFEFVAY---------KKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~--~~~~g~f~f~~~---------~~G~y~~Cf~n~ 74 (179)
..+.+.|+|.+|++|+... ..+.|.+.|.-. ..|.|++=+...
T Consensus 141 ~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~ 194 (259)
T PRK12812 141 DEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYN 194 (259)
T ss_pred ceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 4799999999999998753 334676666543 368999999754
No 20
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.60 E-value=25 Score=27.20 Aligned_cols=67 Identities=7% Similarity=-0.013 Sum_probs=37.2
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHH-----------------HHHHHHHHHHHHHHHHHH
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRR-----------------AIYKAMLGSFFLITASFL 161 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r-----------------v~~~si~~i~vli~~~~~ 161 (179)
+++++.|...+.++...-..+..|..-+-..-..+-+-.+.|.+| --.|+++.+++.++.-++
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lvv 230 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLVV 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 467777888887777766666655433333222333333333332 223666666666666666
Q ss_pred HHHH
Q 040712 162 QIHL 165 (179)
Q Consensus 162 Qv~~ 165 (179)
++|.
T Consensus 231 ~i~~ 234 (235)
T KOG3202|consen 231 IIFI 234 (235)
T ss_pred HHhc
Confidence 6664
No 21
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=74.31 E-value=11 Score=28.93 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=30.4
Q ss_pred CceEEEEECCCCCeeecccceeee--eEEEEc-------ccccceeEeEEcCC
Q 040712 32 EGVELTVTGPSDERVRDFDRRSTA--TFEFVA-------YKKGLYKFCFTNKS 75 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~-------~~~G~y~~Cf~n~~ 75 (179)
..+.+.|+|.+|++|+...- +.| .|.+.- ..+|.|++=+....
T Consensus 124 ~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~ 175 (223)
T PRK12813 124 DKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYS 175 (223)
T ss_pred ceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEe
Confidence 47999999999999987532 334 444442 23689999987654
No 22
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=73.85 E-value=21 Score=22.94 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=28.1
Q ss_pred CceEEEEECCCCC----eeec-ccceeee--eEEEEcccccceeEeEEcC
Q 040712 32 EGVELTVTGPSDE----RVRD-FDRRSTA--TFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~----~v~~-~~~~~~g--~f~f~~~~~G~y~~Cf~n~ 74 (179)
..+.+.|.+|++. .+.- -.....| ..+|++...|.|++++.-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 4688999999987 2222 1222334 4567778888888887643
No 23
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=72.79 E-value=54 Score=27.24 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=28.1
Q ss_pred CCCceEEEEECCCCCeeecccceeeeeEEEEc---ccccceeEeEEc
Q 040712 30 SDEGVELTVTGPSDERVRDFDRRSTATFEFVA---YKKGLYKFCFTN 73 (179)
Q Consensus 30 ~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~---~~~G~y~~Cf~n 73 (179)
++..+.+.+++|+|..........++.-.+.. .+.|.|++-..-
T Consensus 240 ~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~ 286 (374)
T TIGR03503 240 GSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTV 286 (374)
T ss_pred ccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEE
Confidence 46778888999999844443333444444433 356888887653
No 24
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=72.20 E-value=8.7 Score=23.71 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=29.9
Q ss_pred CceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCC
Q 040712 32 EGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSP 76 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s 76 (179)
.+..+.+.++++.......-...|.|.|..-..|.|.+=+.....
T Consensus 15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY 59 (82)
T ss_dssp TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence 467888888777766655445689999996666999998876653
No 25
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=71.25 E-value=16 Score=29.26 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred CceEEEEECCCCCeeecccce----eeeeEEEEc---------ccccceeEeEEcC
Q 040712 32 EGVELTVTGPSDERVRDFDRR----STATFEFVA---------YKKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~----~~g~f~f~~---------~~~G~y~~Cf~n~ 74 (179)
..+.+.|+|.+|++|++.... ..|.+.|+- ...|.|+|=+...
T Consensus 166 ~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 166 GVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred ceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 479999999999999875322 347777763 2368999998654
No 26
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.24 E-value=21 Score=21.06 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRA 144 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 144 (179)
.++.|...++.|...+..|..+..-++.--..-.+-+...|.|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777666644444444444555554
No 27
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=68.73 E-value=7.1 Score=21.36 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcC
Q 040712 150 LGSFFLITASFLQIHLLKRLFDRKQGLSR 178 (179)
Q Consensus 150 ~~i~vli~~~~~Qv~~lk~fF~~k~~~~~ 178 (179)
+-++-++++++.-.+.-|++-.+|+.+.|
T Consensus 14 F~lVglv~i~iva~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQARKRALQR 42 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677778888899999999998876
No 28
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=66.21 E-value=42 Score=25.53 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTE 131 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~ 131 (179)
++++.|+.+|.+++-.+..++...+-.+.|-.
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~t 46 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRLT 46 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777777776665555444
No 29
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=65.08 E-value=12 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040712 142 RRAIYKAMLGSFFLITASFLQIHLLKRLFDRK 173 (179)
Q Consensus 142 ~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~k 173 (179)
.-++||+.+-+++.++.++|- .+|.||++|
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 346777777777777777764 478888875
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=64.85 E-value=98 Score=27.14 Aligned_cols=63 Identities=16% Similarity=0.368 Sum_probs=31.9
Q ss_pred CcEEEEEEEEEeCCC------------CCC-CCCCceEEEEECCCCCeeecccceeeeeEEEEc---c--cccceeEeEE
Q 040712 11 GDTLHCSFVVVKADN------------PWH-YSDEGVELTVTGPSDERVRDFDRRSTATFEFVA---Y--KKGLYKFCFT 72 (179)
Q Consensus 11 ~~~i~~~y~v~~~~~------------~~~-~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~---~--~~G~y~~Cf~ 72 (179)
|+.|...|.+..+-. +|. +.++---+++..|.+..-.+ .......|.+ + .+..|.||-.
T Consensus 19 ~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf~Wa~~p~~~~~~s---~~~~~V~F~ayyLPk~~~e~YqfcYv 95 (546)
T PF07888_consen 19 GTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTFVWAPVPENYVEGS---AVNCQVQFQAYYLPKDDDEFYQFCYV 95 (546)
T ss_pred CCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeEEeeccCccccCCC---ccceEEEECcccCCCCCCCeEEEEEE
Confidence 678888998876421 122 11222223444454311111 1123455544 2 3568999998
Q ss_pred cCCC
Q 040712 73 NKSP 76 (179)
Q Consensus 73 n~~s 76 (179)
+...
T Consensus 96 ~~~g 99 (546)
T PF07888_consen 96 DQKG 99 (546)
T ss_pred CCCc
Confidence 8764
No 31
>PRK15396 murein lipoprotein; Provisional
Probab=64.76 E-value=33 Score=21.70 Aligned_cols=45 Identities=7% Similarity=0.110 Sum_probs=31.5
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRA 144 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 144 (179)
.+++.|...++.|...+..+..+..-.+.--..-.+-++..|.|+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888877776655555555566666665
No 32
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=63.81 E-value=13 Score=30.03 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 105 ILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHL 165 (179)
Q Consensus 105 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 165 (179)
+..+++-|+.++.-|.+..+.+.+ .++.+...++-||-|+-|++-+++++++++.
T Consensus 271 I~~RvnvLN~Rl~vi~d~l~il~e------~ln~~~s~~lEWivIiLI~~eVllsl~~i~~ 325 (331)
T COG1723 271 INPRVNVLNRRLEVISDLLDILNE------QLNHSHSTRLEWIVIILIGLEVLLSLYNIIV 325 (331)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH------HhhhcccceeEEEehhHHHHHHHHHHHHHHH
Confidence 666777777777777777765543 5566777889999999999999999987753
No 33
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=63.22 E-value=24 Score=19.63 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=16.7
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 040712 133 QSIVNKTMSRRAIYKAMLGSFFLITASF 160 (179)
Q Consensus 133 ~~~~~es~~~rv~~~si~~i~vli~~~~ 160 (179)
|.++-+.--.-..|.+++-+++++.+++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666666677776665
No 34
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.69 E-value=24 Score=29.50 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 105 ILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHL 165 (179)
Q Consensus 105 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 165 (179)
|..++.-|+..++.+.+..+.+++ .++++...++-||-|+-|++-++..++|++.
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~e------~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQE------NLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------HhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 566677777888888877777664 4556677889999999999999999998753
No 35
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=61.86 E-value=19 Score=33.71 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=34.7
Q ss_pred CCCceEEEEECCCCCeeec---ccceeeeeEEEEcccccceeEeEEcCC
Q 040712 30 SDEGVELTVTGPSDERVRD---FDRRSTATFEFVAYKKGLYKFCFTNKS 75 (179)
Q Consensus 30 ~~~~i~~~v~~P~g~~v~~---~~~~~~g~f~f~~~~~G~y~~Cf~n~~ 75 (179)
..+++.+.+.+|+|...-. .-+...-+..|+..+.|.|++|+.+..
T Consensus 881 ~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~ 929 (1113)
T KOG0518|consen 881 SSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKD 929 (1113)
T ss_pred CccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecC
Confidence 4678999999999875432 222234467889999999999999875
No 36
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=60.64 E-value=63 Score=29.01 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=34.9
Q ss_pred CceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcC--CCC-----ceeeEEEEE
Q 040712 32 EGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNK--SPY-----HETPDFDIH 86 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~--~s~-----~~~V~f~~~ 86 (179)
..+.+.|+. +|+.+....=.....+.|++..+|.|++=+... .|. .+.|+|.+.
T Consensus 416 ~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 416 LRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred EEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 344445544 566555444445788999999999999888755 342 456666553
No 37
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=60.06 E-value=31 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=30.5
Q ss_pred CceEEEEECCCCCeeecc-c-ceeeeeEEEEcc------cccceeEeEEcCC
Q 040712 32 EGVELTVTGPSDERVRDF-D-RRSTATFEFVAY------KKGLYKFCFTNKS 75 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~-~-~~~~g~f~f~~~------~~G~y~~Cf~n~~ 75 (179)
..+.+.|+|.+|++ +.. . ....|.+.|+-. .+|.|++=+....
T Consensus 123 ~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 123 PTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred cEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 36999999999997 443 2 234677777642 4689999997554
No 38
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=59.88 E-value=70 Score=24.61 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=32.3
Q ss_pred CceEEEEECCCCCeeeccc--ceeeeeEEEEcc---------cccceeEeEEcC
Q 040712 32 EGVELTVTGPSDERVRDFD--RRSTATFEFVAY---------KKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~--~~~~g~f~f~~~---------~~G~y~~Cf~n~ 74 (179)
..+.+.|+|.+|++|+... ..+.|.+.|+-. .+|.|++=+...
T Consensus 129 ~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~ 182 (230)
T PRK12633 129 TKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSAS 182 (230)
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 4799999999999998752 345677777532 468999999754
No 39
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=59.81 E-value=44 Score=21.51 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=34.9
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY 146 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 146 (179)
.+++.|...++.|......+..+..-.+.--..-.+.++..|.|+=-
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888888888888777776666666677777777543
No 40
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=59.25 E-value=80 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040712 142 RRAIYKAMLGSFFLITASFLQIHLLKRLFDRK 173 (179)
Q Consensus 142 ~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~k 173 (179)
+...+|--+-++|+|+++++-.+++=++|++-
T Consensus 212 sk~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 212 SKLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33467777778888888888888888888763
No 41
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=59.09 E-value=16 Score=26.81 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040712 140 MSRRAIYKAMLGSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 140 ~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
.+-|..+++.+-++++++++++|++.+-+--.+
T Consensus 27 I~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 27 IHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999987665554
No 42
>PF12669 P12: Virus attachment protein p12 family
Probab=58.26 E-value=9.3 Score=22.67 Aligned_cols=9 Identities=11% Similarity=0.597 Sum_probs=6.5
Q ss_pred HHHHhhccc
Q 040712 166 LKRLFDRKQ 174 (179)
Q Consensus 166 lk~fF~~k~ 174 (179)
+|++|+++|
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887754
No 43
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=58.23 E-value=51 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=32.6
Q ss_pred CceEEEEECCCCCeeeccc--ceeeeeEEEEcc---------cccceeEeEEcC
Q 040712 32 EGVELTVTGPSDERVRDFD--RRSTATFEFVAY---------KKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~--~~~~g~f~f~~~---------~~G~y~~Cf~n~ 74 (179)
..+.+.|+|.+|++|+... ..+.|.+.|.-. .+|.|++-+...
T Consensus 122 ~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~ 175 (221)
T PRK12634 122 GFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT 175 (221)
T ss_pred CeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 5799999999999998753 344677777653 359999999643
No 44
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=57.02 E-value=59 Score=22.10 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=30.6
Q ss_pred eEEEEECCC-CCeeeccc---ceeeeeEEEEc---ccccceeEeEEcCCCCceeeEEEEEe
Q 040712 34 VELTVTGPS-DERVRDFD---RRSTATFEFVA---YKKGLYKFCFTNKSPYHETPDFDIHV 87 (179)
Q Consensus 34 i~~~v~~P~-g~~v~~~~---~~~~g~f~f~~---~~~G~y~~Cf~n~~s~~~~V~f~~~~ 87 (179)
-.+.|.|.+ ..++|+.. ......|+... +...+|-+||.-..=....|.+.|+.
T Consensus 62 ~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ftGtkInhAvv~vtFeS 122 (132)
T PF15417_consen 62 GIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFTGTKINHAVVKVTFES 122 (132)
T ss_pred ceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEeccEeeeEEEEEEecc
Confidence 345666654 35666542 22234455533 45679999999776434455555543
No 45
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=55.90 E-value=94 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 144 AIYKAMLGSFFLITASFLQIHLLKRL 169 (179)
Q Consensus 144 v~~~si~~i~vli~~~~~Qv~~lk~f 169 (179)
-++|.++.++.+|++++.=+-+=|--
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRKYr 223 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRKYR 223 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998888777665533
No 46
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=54.30 E-value=61 Score=21.60 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRA 144 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 144 (179)
++.+...++...+.+.++..+++-.-++-...-++..+++.|+
T Consensus 55 I~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 55 INKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555544444444455555555554
No 47
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=53.36 E-value=84 Score=22.71 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=39.2
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHH
Q 040712 97 AKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150 (179)
Q Consensus 97 a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~ 150 (179)
.++...+.+..+.++|.+....+++-....-..-++.+.+..=..-+.++..++
T Consensus 49 ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~ 102 (156)
T PF08372_consen 49 PSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVV 102 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHH
Confidence 344556678888999999999998888888887777777776555555544433
No 48
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=53.04 E-value=40 Score=21.38 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=13.5
Q ss_pred CCCceEEEEECCCCCeeeccc
Q 040712 30 SDEGVELTVTGPSDERVRDFD 50 (179)
Q Consensus 30 ~~~~i~~~v~~P~g~~v~~~~ 50 (179)
++...++.|+|++|+.+|...
T Consensus 22 sgq~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 22 SGQRYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp SS--EEEEEE-TT--EEEETT
T ss_pred CCCEEEEEEECCCCCEEEEec
Confidence 457899999999999999863
No 49
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=52.13 E-value=1e+02 Score=23.45 Aligned_cols=49 Identities=6% Similarity=0.169 Sum_probs=31.0
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHH
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFF 154 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v 154 (179)
+.-+-+....|.+|+..+.+..-..+ +.+.+..+..+|++.+|++-.++
T Consensus 7 K~~~~~~~~~L~rle~qi~q~~~~~~-------~~qs~l~~~~~r~tv~slAl~~l 55 (251)
T COG5415 7 KDFVTKYTADLSRLESQIHQLDVALK-------KSQSILSQWQSRLTVYSLALTVL 55 (251)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34456678888888888776655444 44555566666666666654444
No 50
>PHA02650 hypothetical protein; Provisional
Probab=51.71 E-value=24 Score=22.30 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=21.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 138 KTMSRRAIYKAMLGSFFLITASFLQIHLLKRL 169 (179)
Q Consensus 138 es~~~rv~~~si~~i~vli~~~~~Qv~~lk~f 169 (179)
.+..+.-.++-++-++++++++++-..|||-.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666777777788888888743
No 51
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=51.58 E-value=47 Score=19.33 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=30.1
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRA 144 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 144 (179)
+.++.|+..+..|......|..+..-....-.+.-..++.+..++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 446778888888888888887777666655555555555555444
No 52
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.41 E-value=49 Score=19.44 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTE 131 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~ 131 (179)
++.++..+.++...+..++.+.+-++.--.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888776665333
No 53
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=50.69 E-value=38 Score=21.84 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=25.5
Q ss_pred cCCCcEEEEEEEEEeCCC-CCCCCCCceEEEEECCCCCeeecc
Q 040712 8 ECEGDTLHCSFVVVKADN-PWHYSDEGVELTVTGPSDERVRDF 49 (179)
Q Consensus 8 ~~~~~~i~~~y~v~~~~~-~~~~~~~~i~~~v~~P~g~~v~~~ 49 (179)
|++++.+...+.|..... | +..+.+.|.|.+|+++...
T Consensus 8 P~pg~~V~sp~~V~G~A~~F----Egtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 8 PAPGDTVSSPVKVSGKARVF----EGTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred CCCcCCcCCCEEEEEEEEEe----eeEEEEEEEcCCCcEEEEe
Confidence 334666666666665221 2 4579999999999998553
No 54
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=50.64 E-value=38 Score=22.95 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=19.5
Q ss_pred eeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc
Q 040712 5 HNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF 49 (179)
Q Consensus 5 e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~ 49 (179)
..+. +|...=+..-...++ ....+++.|++|+|..+...
T Consensus 64 v~L~-aG~yyPiRi~~~N~~-----g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 64 VYLT-AGTYYPIRIVYANGG-----GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp EEE--TT-BEEEEEEEEE-S-----S-EEEEEEEEETT-S--B--
T ss_pred EEEE-CCcEEEEEEEEEcCC-----CceEEEEEEECCCCcEEecC
Confidence 3444 355444444444443 24689999999999988765
No 55
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=50.62 E-value=34 Score=21.85 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 140 MSRRAIYKAMLGSFFLITASFLQIHLL 166 (179)
Q Consensus 140 ~~~rv~~~si~~i~vli~~~~~Qv~~l 166 (179)
..+-..+|.++..+++++.+++=+.|+
T Consensus 45 l~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 45 LSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678999999999999888766554
No 56
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=48.20 E-value=64 Score=22.85 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcC
Q 040712 146 YKAMLGSFFLITASFLQIHLLKRLFDRKQGLSR 178 (179)
Q Consensus 146 ~~si~~i~vli~~~~~Qv~~lk~fF~~k~~~~~ 178 (179)
..-.++++..+++.++.++.+-.||++|+.+-|
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~ 86 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPK 86 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 444577788888889999999999999987643
No 57
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=48.17 E-value=58 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 141 SRRAIYKAMLGSFFLITASFLQIHL 165 (179)
Q Consensus 141 ~~rv~~~si~~i~vli~~~~~Qv~~ 165 (179)
..-.++|.|+.++.+|++++-=|-+
T Consensus 196 aDPSLiWvmistGg~IvltLTYVGw 220 (233)
T TIGR02878 196 ADPSLLWVMISTGGIIVATLTYVGW 220 (233)
T ss_pred CCcHHHHHHHHhhHHHHHHHhhhhh
Confidence 3446899999999999988765543
No 58
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=48.06 E-value=1e+02 Score=22.14 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFF 154 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v 154 (179)
++.+...-..+.+....++....-+-..+.+....+++...++.+|.-++.+.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 44455555555566666666777777778889999999999999998877654
No 59
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=47.18 E-value=1e+02 Score=23.16 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh------HhHHHHHHHHHHHHHHHHHHHH
Q 040712 103 NPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKT------MSRRAIYKAMLGSFFLITASFL 161 (179)
Q Consensus 103 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es------~~~rv~~~si~~i~vli~~~~~ 161 (179)
..-+++++.+.+.+..+..+..-.+++........++ -..-..|+..+.++++|++++.
T Consensus 104 ~~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 104 QQWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665555444444444444443 2333445555666666555544
No 60
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=46.79 E-value=97 Score=27.89 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=31.9
Q ss_pred CceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcC
Q 040712 32 EGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~ 74 (179)
.-..|.+.+++|.....+.-.....|++++..+|.|++=....
T Consensus 223 ~LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VK 265 (667)
T PRK14081 223 ILYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVK 265 (667)
T ss_pred EEEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEe
Confidence 4455666677777666555556889999999999999866544
No 61
>PHA03054 IMV membrane protein; Provisional
Probab=46.73 E-value=35 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 140 MSRRAIYKAMLGSFFLITASFLQIHLLK 167 (179)
Q Consensus 140 ~~~rv~~~si~~i~vli~~~~~Qv~~lk 167 (179)
.++.-.+|-++-++.++++.++-..|||
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555667777777777788876
No 62
>PHA02819 hypothetical protein; Provisional
Probab=45.86 E-value=43 Score=20.65 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 140 MSRRAIYKAMLGSFFLITASFLQIHLLK 167 (179)
Q Consensus 140 ~~~rv~~~si~~i~vli~~~~~Qv~~lk 167 (179)
..+.-.++-++-++.++++.++-..|||
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555667777777777788887
No 63
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=45.39 E-value=53 Score=21.71 Aligned_cols=34 Identities=0% Similarity=-0.041 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 040712 144 AIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLS 177 (179)
Q Consensus 144 v~~~si~~i~vli~~~~~Qv~~lk~fF~~k~~~~ 177 (179)
++.-+++.+++-+++.+.=.+++|++|.-+..+.
T Consensus 20 IfLItLasVvvavGl~aGLfFcvR~~lslrn~~~ 53 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCVRNSLSLRNTFD 53 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 4445566666666777777889999887766554
No 64
>PHA02975 hypothetical protein; Provisional
Probab=44.85 E-value=50 Score=20.27 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 141 SRRAIYKAMLGSFFLITASFLQIHLLKR 168 (179)
Q Consensus 141 ~~rv~~~si~~i~vli~~~~~Qv~~lk~ 168 (179)
.+...+|-++-++.+++++++-..|||-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666677777778888888873
No 65
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=44.73 E-value=46 Score=22.54 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=27.7
Q ss_pred CcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEE
Q 040712 11 GDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFT 72 (179)
Q Consensus 11 ~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~ 72 (179)
++.+.+.+.+.-.... ++..+.+.|++.+|..++.... ......+....+|.|++++.
T Consensus 34 ge~~~i~i~~~~~~~i---~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~~ 91 (142)
T PF14524_consen 34 GEPIRIRIDYEVNEDI---DDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTFT 91 (142)
T ss_dssp TSEEEEEEEEEESS-E---EEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEEE
T ss_pred CCEEEEEEEEEECCCC---CccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEEE
Confidence 5555555555542211 2356888999999988876321 11122333322555555554
No 66
>PHA03163 hypothetical protein; Provisional
Probab=44.31 E-value=69 Score=20.74 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=21.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 139 TMSRRAIYKAMLGSFFLITASFLQIHLL 166 (179)
Q Consensus 139 s~~~rv~~~si~~i~vli~~~~~Qv~~l 166 (179)
+..+--.+|+++..+++++.++.=+.|+
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y~ 80 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIYM 80 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999998887766554
No 67
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=43.28 E-value=89 Score=21.16 Aligned_cols=13 Identities=31% Similarity=0.674 Sum_probs=10.4
Q ss_pred cccceeEeEEcCC
Q 040712 63 KKGLYKFCFTNKS 75 (179)
Q Consensus 63 ~~G~y~~Cf~n~~ 75 (179)
..|.|++.|....
T Consensus 56 ~~G~Y~l~F~~g~ 68 (112)
T TIGR02962 56 AAGIYKLRFDTGD 68 (112)
T ss_pred CCeeEEEEEEhhh
Confidence 5799999998653
No 68
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.54 E-value=70 Score=21.33 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=23.8
Q ss_pred ccccCcccH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHhHhHHH
Q 040712 97 AKDEHINPI-------LDQIAKLEEALYDI--HFQQHWFDAQTERQSIVNKTMSRRA 144 (179)
Q Consensus 97 a~~~~~~~l-------~~~l~~l~~~l~~i--~~~q~~~~~re~~~~~~~es~~~rv 144 (179)
+++++++.+ +.+++.++..+.++ +++..-++.+-.+.+.....++.++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445556666 44455555555554 3444444444445554444444443
No 69
>PRK14163 heat shock protein GrpE; Provisional
Probab=42.39 E-value=1.4e+02 Score=22.84 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY 146 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 146 (179)
.++.++..+..+.+.+..++.+.+-+|.|..+-+.........-+.
T Consensus 48 ~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~ 93 (214)
T PRK14163 48 QLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLL 93 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777778777777777666666554443333
No 70
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=42.37 E-value=81 Score=19.40 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=15.8
Q ss_pred cccccceeEeEEcCCCC--ceeeEEEEEecc
Q 040712 61 AYKKGLYKFCFTNKSPY--HETPDFDIHVAH 89 (179)
Q Consensus 61 ~~~~G~y~~Cf~n~~s~--~~~V~f~~~~~~ 89 (179)
+.+.+..++.|.|-... .+..+|.+.++.
T Consensus 3 ~~~~d~lkf~F~~id~~d~~re~s~~l~i~~ 33 (74)
T PF08234_consen 3 AIGGDQLKFVFTNIDPNDPDREFSFTLDISS 33 (74)
T ss_dssp --STT-EEEEE-S-BTTBSSS-EEEEEE-SS
T ss_pred ccCCceEEEEEeEcCCCCCCceEEEEEEECC
Confidence 34556688889887653 567888888765
No 71
>PF14109 GldH_lipo: GldH lipoprotein
Probab=42.31 E-value=88 Score=21.68 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.0
Q ss_pred ccccceeEeEEcC
Q 040712 62 YKKGLYKFCFTNK 74 (179)
Q Consensus 62 ~~~G~y~~Cf~n~ 74 (179)
+.+|.|.+.+.--
T Consensus 103 ~~~G~Y~~~i~q~ 115 (131)
T PF14109_consen 103 PRKGSYTFTIEQA 115 (131)
T ss_pred CCCCcEEEEEEec
Confidence 4677888777644
No 72
>PRK01844 hypothetical protein; Provisional
Probab=41.08 E-value=86 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040712 147 KAMLGSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 147 ~si~~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
|-++-++.+++-.+.=.|.-|++|++
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445565666654
No 73
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=40.27 E-value=36 Score=17.25 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 040712 141 SRRAIYKAMLGSFFLITASF 160 (179)
Q Consensus 141 ~~rv~~~si~~i~vli~~~~ 160 (179)
..+--.|+++|+++.+++..
T Consensus 10 ~~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 10 RRRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHHHH
Confidence 45567899999988877654
No 74
>PRK00523 hypothetical protein; Provisional
Probab=40.17 E-value=92 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040712 146 YKAMLGSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 146 ~~si~~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
.|-++-++.+++-.+.=.|.-|++|++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555665666654
No 75
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=40.03 E-value=55 Score=18.90 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 040712 151 GSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 151 ~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
-+++.+..+++=+...|+|+.+
T Consensus 30 ~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 30 PVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3567778888889999998865
No 76
>PRK14155 heat shock protein GrpE; Provisional
Probab=39.26 E-value=1.7e+02 Score=22.20 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSR 142 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 142 (179)
.++.++.++..+.+.+..+..+.+-+|.|..+-+........
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~ 62 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAI 62 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788877888887777777766655544333
No 77
>PHA02844 putative transmembrane protein; Provisional
Probab=39.17 E-value=59 Score=20.28 Aligned_cols=25 Identities=28% Similarity=0.374 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 143 RAIYKAMLGSFFLITASFLQIHLLK 167 (179)
Q Consensus 143 rv~~~si~~i~vli~~~~~Qv~~lk 167 (179)
.-.++-++-++.++++.++-..|||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444556666667777777776
No 78
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.97 E-value=1.1e+02 Score=19.89 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=10.6
Q ss_pred eeeEEEEcccccceeE
Q 040712 54 TATFEFVAYKKGLYKF 69 (179)
Q Consensus 54 ~g~f~f~~~~~G~y~~ 69 (179)
+..+.|++.+.|+|.+
T Consensus 75 ~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 75 TATVTFTPLKPGEYEF 90 (104)
T ss_dssp EEEEEEEE-S-EEEEE
T ss_pred EEEEEEcCCCCEEEEE
Confidence 4567788888888875
No 79
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=38.42 E-value=1.9e+02 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040712 146 YKAMLGSFFLITASFLQIHLL 166 (179)
Q Consensus 146 ~~si~~i~vli~~~~~Qv~~l 166 (179)
||..+-+++ +++.++-++.+
T Consensus 228 ~~~~~~i~~-v~~~Fi~mvl~ 247 (251)
T PF09753_consen 228 CWTWLMIFV-VIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHH
Confidence 555553333 33344444433
No 80
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=38.05 E-value=1e+02 Score=19.42 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHH
Q 040712 114 EALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYK 147 (179)
Q Consensus 114 ~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~ 147 (179)
+.|+.+.+.-+-+......++..+...+.+..|-
T Consensus 31 e~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 31 EKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666666555443
No 81
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.95 E-value=1.6e+02 Score=21.67 Aligned_cols=26 Identities=12% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCcEEEEEEEEEeCCCCCCCCCCceEEEEEC
Q 040712 10 EGDTLHCSFVVVKADNPWHYSDEGVELTVTG 40 (179)
Q Consensus 10 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~ 40 (179)
+|..+++.|.+-.-|. ....++.+.|
T Consensus 36 ~g~~v~V~~~iyN~G~-----~~A~dV~l~D 61 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGS-----SAAYDVKLTD 61 (181)
T ss_pred CCcEEEEEEEEEECCC-----CeEEEEEEEC
Confidence 5899999999998664 5688999998
No 82
>PRK14143 heat shock protein GrpE; Provisional
Probab=37.95 E-value=1.8e+02 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKT 139 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es 139 (179)
+..++..+..+.+.+..+..+.+-+|.|..+.+.....
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777666665554443
No 83
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=37.83 E-value=2e+02 Score=22.73 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=10.9
Q ss_pred HHHHhHhHHHHHHHHHHHHHHH
Q 040712 135 IVNKTMSRRAIYKAMLGSFFLI 156 (179)
Q Consensus 135 ~~~es~~~rv~~~si~~i~vli 156 (179)
..++.+|..+...+++.++++.
T Consensus 249 ~~s~~~N~~mk~LTvvt~IflP 270 (318)
T TIGR00383 249 LVNNKMNEIMKILTVVSTIFIP 270 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444433
No 84
>PRK14149 heat shock protein GrpE; Provisional
Probab=36.94 E-value=1.8e+02 Score=21.78 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=32.3
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhH
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSR 142 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 142 (179)
++.++.++..+..+.+.+..+..+..-+|.|..+-+........
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~ 85 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAY 85 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999988888888777776666555544333
No 85
>PHA03156 hypothetical protein; Provisional
Probab=36.83 E-value=1e+02 Score=19.94 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=21.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 139 TMSRRAIYKAMLGSFFLITASFLQIHLL 166 (179)
Q Consensus 139 s~~~rv~~~si~~i~vli~~~~~Qv~~l 166 (179)
+..+--.+|.++..+++++.+++=+.|+
T Consensus 52 sl~SFSSIWallN~~i~~~A~~ifL~y~ 79 (90)
T PHA03156 52 SIKTFSSIWAILNGIIFFCASLFFLRHL 79 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999998887665553
No 86
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=35.70 E-value=40 Score=15.40 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 040712 147 KAMLGSFFLITAS 159 (179)
Q Consensus 147 ~si~~i~vli~~~ 159 (179)
|+++|+++.+++.
T Consensus 3 FTLiE~~v~l~i~ 15 (20)
T PF07963_consen 3 FTLIELLVALAII 15 (20)
T ss_pred eeHHHHHHHHHHH
Confidence 6777777665543
No 87
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.59 E-value=1.9e+02 Score=21.57 Aligned_cols=49 Identities=4% Similarity=0.117 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAM 149 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si 149 (179)
.++.++.++..+.+.+..+..+.+-+|.|..+-+.........-+.-.+
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~L 88 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESL 88 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777776666655554443333333
No 88
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.22 E-value=50 Score=22.03 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040712 145 IYKAMLGSFFLITASFLQIHLLKRLFD 171 (179)
Q Consensus 145 ~~~si~~i~vli~~~~~Qv~~lk~fF~ 171 (179)
.+|+++..++.++.+++..+.=++|-+
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~ 33 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAK 33 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 579998898888888888877666654
No 89
>PRK14156 heat shock protein GrpE; Provisional
Probab=35.02 E-value=1.9e+02 Score=21.40 Aligned_cols=44 Identities=5% Similarity=0.082 Sum_probs=32.4
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhH
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSR 142 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 142 (179)
...++.++..+..+.+.+..+..+.+-+|.|..+-+........
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~ 76 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRS 76 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888888777766666554433
No 90
>PF07116 DUF1372: Protein of unknown function (DUF1372); InterPro: IPR010779 This entry is represented by Streptococcus phage Sfi11, Gp93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
Probab=34.76 E-value=76 Score=21.12 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=22.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 138 KTMSRRAIYKAMLGSFFLITASFLQIHLLK 167 (179)
Q Consensus 138 es~~~rv~~~si~~i~vli~~~~~Qv~~lk 167 (179)
+....++..+..+-+++.++.+++|+++.-
T Consensus 6 ~~~~~~~~~~~~~~il~s~~~~~~~v~~~~ 35 (104)
T PF07116_consen 6 KEKRDNLKRFATIIILISLLFNIWQVIYVI 35 (104)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 444556777777888888889999987744
No 91
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=34.40 E-value=1.9e+02 Score=21.23 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH
Q 040712 106 LDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAM 149 (179)
Q Consensus 106 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si 149 (179)
......|...+..+..+..-+.....+....++...++++|..+
T Consensus 56 ~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl 99 (180)
T PF04678_consen 56 NSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGL 99 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888877777777777777777777776554
No 92
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=34.20 E-value=82 Score=20.31 Aligned_cols=35 Identities=11% Similarity=0.322 Sum_probs=24.8
Q ss_pred CCCCeeecccceeeeeEEEEcccccceeEeEEcCCCC
Q 040712 41 PSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPY 77 (179)
Q Consensus 41 P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s~ 77 (179)
|-+...+.-.|...|.++... +|.|++||.-....
T Consensus 49 ~p~~r~h~L~G~~~g~~Si~i--~~~~RliF~~~~~~ 83 (93)
T PF05015_consen 49 PPSNRLHKLKGDRKGQWSIRI--NGNWRLIFRFEDGD 83 (93)
T ss_pred CcCCCcccccCCCCCcEEEEe--CCCEEEEEEEeCCC
Confidence 335555565666788888864 67899999977653
No 93
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=33.96 E-value=1.4e+02 Score=19.51 Aligned_cols=62 Identities=8% Similarity=0.093 Sum_probs=27.8
Q ss_pred cEEEEEEEEEeCCCCCCCCCCceEEEEECC-----CCCeeecccceeeeeEEEEcccccceeEeEEcC
Q 040712 12 DTLHCSFVVVKADNPWHYSDEGVELTVTGP-----SDERVRDFDRRSTATFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 12 ~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P-----~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~ 74 (179)
..+.|...+.++-.. .+....+-+-+..| +....|..+-..+|.|++.--.+|.|.+-....
T Consensus 3 G~VsG~l~l~dg~~~-~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~ 69 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTN-PPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYAD 69 (95)
T ss_dssp BEEEEEEE---SS---TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE-
T ss_pred CEEEEEEEEccCccc-CccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEe
Confidence 356777777665210 00122344444544 333444444447999999999999999988774
No 94
>PRK14161 heat shock protein GrpE; Provisional
Probab=33.52 E-value=2e+02 Score=21.25 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=30.8
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRR 143 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 143 (179)
+.++.++.++..+.+.+..+..+.+-+|.|..+-+.........
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~ 69 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIA 69 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888888887777777666555544433
No 95
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=33.17 E-value=1.4e+02 Score=19.57 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=18.4
Q ss_pred HhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040712 132 RQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLF 170 (179)
Q Consensus 132 ~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF 170 (179)
.....+..+-.-+..|-+.-++.+++.-+ +-.||.+|
T Consensus 60 e~k~~n~Knir~~KmwilGlvgTi~gsli--ia~lr~~f 96 (98)
T PF11166_consen 60 ENKKKNDKNIRDIKMWILGLVGTIFGSLI--IALLRTIF 96 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 34444444444477776655555443322 33455555
No 96
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=32.80 E-value=1.8e+02 Score=21.70 Aligned_cols=35 Identities=3% Similarity=0.068 Sum_probs=28.2
Q ss_pred HHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 040712 126 FDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASF 160 (179)
Q Consensus 126 ~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~ 160 (179)
.|+|-+.|.+......+|+.+.-+++.++.+++.+
T Consensus 19 hRerVas~Yq~sa~~Ks~lk~l~~~h~ll~l~~~a 53 (186)
T PF07086_consen 19 HRERVASHYQMSAQLKSRLKKLILFHALLWLLMAA 53 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888889999998988888877644
No 97
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=31.88 E-value=2.7e+02 Score=22.36 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 040712 106 LDQIAKLEEALYDIHFQQHWFDAQT-----ERQSIVNKTMSRRAIYKAMLGSFFLITASF 160 (179)
Q Consensus 106 ~~~l~~l~~~l~~i~~~q~~~~~re-----~~~~~~~es~~~rv~~~si~~i~vli~~~~ 160 (179)
...++.+.+.+..+.+....++++- ......+...|.-+..+|++.++++..+-+
T Consensus 219 ~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlI 278 (322)
T COG0598 219 REYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLI 278 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444444444444444333333 334445566677777777766665544443
No 98
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.58 E-value=1.6e+02 Score=19.72 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKT 139 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es 139 (179)
++.++..+..+...+..|+.....+-+--.+.+--++.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444333333333333
No 99
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=31.42 E-value=1.4e+02 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=30.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMS 141 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 141 (179)
.++.++..|..+...|+.+...+.|.+++-.-...+..+.+
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35567777777778888888888888887777777666544
No 100
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=31.31 E-value=1.7e+02 Score=27.76 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=38.7
Q ss_pred CcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeec---cccee-eeeEEEEcccccceeEeEEcC
Q 040712 11 GDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRD---FDRRS-TATFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 11 ~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~---~~~~~-~g~f~f~~~~~G~y~~Cf~n~ 74 (179)
...+.+.|.+.+.+ +..+.+.|.||+|+.... ..+.. ...++|.....|.|.+=+.-.
T Consensus 375 s~~~d~~fD~~Dag------eg~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~ 436 (1113)
T KOG0518|consen 375 SVEVDFTFDEGDAG------EGLLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYG 436 (1113)
T ss_pred cccceeeEEccccc------cceEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEEC
Confidence 34455666666554 345999999999975422 11112 457888888999999888644
No 101
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.21 E-value=2.5e+02 Score=21.69 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=31.4
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRR 143 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 143 (179)
..++.++.++..+.+.+..+..+.+-+|.|..+.+.........
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~ 127 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGII 127 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888888888888888887777777766665544433
No 102
>PRK14164 heat shock protein GrpE; Provisional
Probab=31.17 E-value=2.4e+02 Score=21.57 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=37.0
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHH
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~ 150 (179)
...+..++.++..+.+.+..+..+.+-+|.|..+-+.........-+.-.++
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LL 127 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLL 127 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778899999999999999888888888777766665544444433333
No 103
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=31.15 E-value=1.2e+02 Score=18.05 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHH
Q 040712 141 SRRAIYKAMLGS 152 (179)
Q Consensus 141 ~~rv~~~si~~i 152 (179)
+.+.++|+++-+
T Consensus 37 ~~~~i~~~~~i~ 48 (59)
T PF09889_consen 37 KTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.11 E-value=1.1e+02 Score=23.88 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=28.0
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNK 138 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 138 (179)
.+++.+..++.+|...++....+.+-+++|+.....-.+
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888777777766554443
No 105
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=31.05 E-value=86 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=20.1
Q ss_pred cccccceeEeEEcCCCCceeeEEEEEe
Q 040712 61 AYKKGLYKFCFTNKSPYHETPDFDIHV 87 (179)
Q Consensus 61 ~~~~G~y~~Cf~n~~s~~~~V~f~~~~ 87 (179)
..+.|.|.+=..|... ...+.|++.+
T Consensus 74 ~~E~G~YTf~a~N~~~-~~s~tF~l~v 99 (101)
T cd05860 74 GTEGGTYTFLVSNSDA-SASVTFNVYV 99 (101)
T ss_pred hhhCcEEEEEEECCCC-eEEEEEEEEE
Confidence 3578999999999875 3667777765
No 106
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=30.70 E-value=87 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=23.4
Q ss_pred EEEEECCCCCeeecc-----cceeeeeEEEEccc-ccc--eeEeEEcC
Q 040712 35 ELTVTGPSDERVRDF-----DRRSTATFEFVAYK-KGL--YKFCFTNK 74 (179)
Q Consensus 35 ~~~v~~P~g~~v~~~-----~~~~~g~f~f~~~~-~G~--y~~Cf~n~ 74 (179)
++.+.+.+|+++... .+.++..|++...+ .|. |.+||.-.
T Consensus 25 dl~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~e 72 (112)
T PF09116_consen 25 DLCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKME 72 (112)
T ss_dssp EEEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGG
T ss_pred eEEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEec
Confidence 445555567766654 23457778887743 355 88888743
No 107
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.58 E-value=2.2e+02 Score=20.86 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=30.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY 146 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 146 (179)
.++.++.++..+.+.+..+..+.+-+|.|..+.+.........-+.
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~ 71 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLL 71 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666655544443333
No 108
>PRK14154 heat shock protein GrpE; Provisional
Probab=30.39 E-value=2.4e+02 Score=21.38 Aligned_cols=49 Identities=4% Similarity=0.121 Sum_probs=32.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAM 149 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si 149 (179)
.++.++.++..+.+.+..+..+.+-+|.|..+-+.........-+.-.+
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~L 108 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDL 108 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888877777777766666554444333333
No 109
>PRK14151 heat shock protein GrpE; Provisional
Probab=30.30 E-value=2.2e+02 Score=20.90 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=27.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMS 141 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 141 (179)
.++.++.++..+.+.+..+..+.+-+|.|..+-+.......
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a 68 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFA 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777666665544433
No 110
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=29.82 E-value=99 Score=17.55 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 040712 153 FFLITASFLQIHLLKRLF 170 (179)
Q Consensus 153 ~vli~~~~~Qv~~lk~fF 170 (179)
++++++.+.-..++|++-
T Consensus 9 vli~lv~~gy~~hmkryc 26 (54)
T PF13260_consen 9 VLIVLVVVGYFCHMKRYC 26 (54)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555567788763
No 111
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=29.60 E-value=3.8e+02 Score=27.13 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=40.6
Q ss_pred CCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccce--ee--eeEEEEccc---ccceeEeEEcCC
Q 040712 10 EGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRR--ST--ATFEFVAYK---KGLYKFCFTNKS 75 (179)
Q Consensus 10 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~--~~--g~f~f~~~~---~G~y~~Cf~n~~ 75 (179)
+|+.+++....-+.+.....++..+.+.+.+|+|..+.+..-. .+ +.++|+.++ .|.|.+=+.-..
T Consensus 407 pGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~~~~~~ 479 (1621)
T COG2373 407 PGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYTLELYTGG 479 (1621)
T ss_pred CCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEEEEEEeCC
Confidence 3556655554433221102356789999999999887764221 23 456666665 489998887543
No 112
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.52 E-value=1.8e+02 Score=19.62 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=26.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRA 144 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 144 (179)
.++.++..|..+...+..|+.....+-+--...+--++....|+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 35566667777777777777766666654444554455544443
No 113
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=29.28 E-value=99 Score=16.48 Aligned_cols=29 Identities=14% Similarity=-0.062 Sum_probs=19.2
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 040712 133 QSIVNKTMSRRAIYKAMLGSFFLITASFL 161 (179)
Q Consensus 133 ~~~~~es~~~rv~~~si~~i~vli~~~~~ 161 (179)
.....+.-.+.-..|++.-+++++++..+
T Consensus 5 ~hkai~aYEr~Wi~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 5 AHKAIEAYERGWIAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555566777888877777776654
No 114
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=29.26 E-value=1.5e+02 Score=18.51 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=27.4
Q ss_pred EEEEEEEEeCCCCCCCCCCceEEEEECCCCCee--ecccce-----eeeeEEEEcc------cccceeEeEEc
Q 040712 14 LHCSFVVVKADNPWHYSDEGVELTVTGPSDERV--RDFDRR-----STATFEFVAY------KKGLYKFCFTN 73 (179)
Q Consensus 14 i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v--~~~~~~-----~~g~f~f~~~------~~G~y~~Cf~n 73 (179)
+.+.+.+.... -.++.+.+.+|+|..+ ....+. ....+.|... ..|.+++=+..
T Consensus 4 v~v~v~i~H~~------~gdL~i~L~SP~Gt~~~L~~~~~~d~~~~~~~~~~f~~~~f~Ge~~~G~W~L~v~D 70 (87)
T PF01483_consen 4 VQVSVDITHPY------RGDLRITLISPSGTRSTLKDRRGSDDSGSGFLNWTFTSVAFWGESANGTWTLRVTD 70 (87)
T ss_dssp EEEEEEEEESS------GGGEEEEEE-TT--EEEEE-SSTTHHHSTSEEEEEEEESTTTT-B--EEEEEEEEE
T ss_pred EEEEEEEEcCC------cCCEEEEEECCCCCEEEEECCcCCCcccccccccEEEEEeecCccCCCEEEEEEEE
Confidence 44555555443 3589999999999744 332222 1233344421 35777777766
No 115
>PHA02955 hypothetical protein; Provisional
Probab=29.23 E-value=69 Score=24.37 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040712 146 YKAMLGSFFLITASFLQIHLLKRLFDRK 173 (179)
Q Consensus 146 ~~si~~i~vli~~~~~Qv~~lk~fF~~k 173 (179)
-|.++-++++++..++ ++|+||-.+-|
T Consensus 180 ~w~ii~~v~ii~~~v~-l~yikR~i~~k 206 (213)
T PHA02955 180 KWFIIYIVLCLLILII-LGYIYRTVRIK 206 (213)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHheee
Confidence 4556666666666666 99999866544
No 116
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=29.20 E-value=53 Score=19.46 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.4
Q ss_pred cccccCcccHHHHHHHHHHHHH
Q 040712 96 HAKDEHINPILDQIAKLEEALY 117 (179)
Q Consensus 96 ~a~~~~~~~l~~~l~~l~~~l~ 117 (179)
.+++.+.++++..++++.+.|+
T Consensus 35 ~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 35 NAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred cccccchhHHHHHHHHHHHHHc
Confidence 4567888899999988887764
No 117
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=29.00 E-value=1.8e+02 Score=19.43 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040712 141 SRRAIYKAMLGSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 141 ~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
.....+++++..++-+++++.-.+.++.++++
T Consensus 50 ~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~ 81 (118)
T PF10256_consen 50 FEPISWRNIIENILGCLTLGLSSLCFKTHYKR 81 (118)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877777776666666655554
No 118
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.92 E-value=1.4e+02 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHH
Q 040712 107 DQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLI 156 (179)
Q Consensus 107 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli 156 (179)
+.+..|...|++|+.+++-...=-.-..++++.|..--.+.||+|-+++|
T Consensus 365 ~Dl~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhllli 414 (1102)
T KOG1924|consen 365 DDLEELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLI 414 (1102)
T ss_pred hhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Confidence 45667778888888888877777778888999999889999999988765
No 119
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=28.86 E-value=1.2e+02 Score=17.86 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=23.0
Q ss_pred eeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCee
Q 040712 4 SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERV 46 (179)
Q Consensus 4 ~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v 46 (179)
...++ .++.+.+.-.+..-+. ....+.+.+++.++..+
T Consensus 41 ~~p~~-~gd~l~~~~~v~~~g~----~~~~~~~~v~~~~~~~~ 78 (79)
T PF03061_consen 41 LRPVR-PGDTLRVEARVVRVGR----KSFTVEVEVYSEDGRLC 78 (79)
T ss_dssp SS-BB-TTSEEEEEEEEEEEES----SEEEEEEEEEETTSCEE
T ss_pred ccccC-CCeEEEEEEEEEEECC----EEEEEEEEEEECCCcEE
Confidence 34555 5777777777776432 24567777777666543
No 120
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.73 E-value=2.6e+02 Score=21.60 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTE 131 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~ 131 (179)
+-.++.+|.+++..++.+...+.++..|-.
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335677777777777777777777776643
No 121
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=28.71 E-value=35 Score=23.41 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.3
Q ss_pred cccceeEeEEcCC
Q 040712 63 KKGLYKFCFTNKS 75 (179)
Q Consensus 63 ~~G~y~~Cf~n~~ 75 (179)
..|.|++||.-..
T Consensus 115 P~GsYRiCFrL~~ 127 (145)
T TIGR02542 115 PEGSYRICFRLFN 127 (145)
T ss_pred CCCceEEEEEEec
Confidence 4689999998554
No 122
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.54 E-value=2.6e+02 Score=21.00 Aligned_cols=45 Identities=2% Similarity=-0.045 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY 146 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 146 (179)
++.++..+..+.+.+..+..+.+-+|.|..+-+.........-+.
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~ 93 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLI 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666665555544433333
No 123
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=28.08 E-value=1.1e+02 Score=17.01 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=8.8
Q ss_pred HHHHHHHHHH---HHHHHHH
Q 040712 146 YKAMLGSFFL---ITASFLQ 162 (179)
Q Consensus 146 ~~si~~i~vl---i~~~~~Q 162 (179)
.||++-++-+ ++++++|
T Consensus 8 iFsvvIil~If~~iGl~IyQ 27 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQ 27 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 6666666
No 124
>PRK14159 heat shock protein GrpE; Provisional
Probab=27.43 E-value=2.6e+02 Score=20.64 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=31.8
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMS 141 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 141 (179)
++.++.++..+..+.+.+..+..+.+-+|.|..+-+.......
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a 71 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYA 71 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888877776666555433
No 125
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=27.43 E-value=1.5e+02 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 130 TERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHL 165 (179)
Q Consensus 130 e~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~ 165 (179)
..+..++++...+|+.+.+++.+++.=.+.++|+.+
T Consensus 107 ~~~r~~l~~~Lr~Rf~~~gi~nlll~Pfi~i~~il~ 142 (370)
T PF04109_consen 107 NSRRKELAEELRKRFRLAGILNLLLSPFILIYQILY 142 (370)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345678899999999999999999998888888653
No 126
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=27.34 E-value=85 Score=18.87 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.5
Q ss_pred ccccceeEeEEcCCCC-ceeeEEEE
Q 040712 62 YKKGLYKFCFTNKSPY-HETPDFDI 85 (179)
Q Consensus 62 ~~~G~y~~Cf~n~~s~-~~~V~f~~ 85 (179)
...|.|+.+..|.... .....|.+
T Consensus 44 ~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 44 KDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred HHCEEEEEEEEECCCceeeEEEEEE
Confidence 4569999999999753 45565554
No 127
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=26.80 E-value=2.5e+02 Score=20.24 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 103 NPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKR 168 (179)
Q Consensus 103 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~ 168 (179)
..+...+.+.......+..+.+-+..+-.......+....+=-.|.+..+++=|++++.-|-.|.+
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~Lt~ 134 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITALTK 134 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777766666666666667777777778777777777777777666654
No 128
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=26.77 E-value=2.4e+02 Score=26.17 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 127 DAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKR 168 (179)
Q Consensus 127 ~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~ 168 (179)
+.|-.-.-.+.=+|..||+.|-++-+++++++.+--+..+-|
T Consensus 44 ~~R~kY~~Y~~CATSTRim~Wilf~cvll~Iv~iscfvti~R 85 (981)
T PF03408_consen 44 RMRCKYLCYLCCATSTRIMAWILFVCVLLSIVLISCFVTIAR 85 (981)
T ss_pred HHhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667788999999999998888877776665555544
No 129
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.62 E-value=1.3e+02 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHhH-hHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhccc
Q 040712 135 IVNKTM-SRRAIYKAMLGSFFLITASFL----------QIHLLKRLFDRKQ 174 (179)
Q Consensus 135 ~~~es~-~~rv~~~si~~i~vli~~~~~----------Qv~~lk~fF~~k~ 174 (179)
+..|.. ++..+.-.+|-|+||+++|.+ +|-+|||==...|
T Consensus 119 ~~CEen~~K~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ~gK 169 (227)
T PF05399_consen 119 EICEENNNKMAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQVGK 169 (227)
T ss_pred hhhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445544 344444444555555444432 5667776555333
No 130
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.59 E-value=56 Score=21.40 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=12.7
Q ss_pred ceEEEEECCCCCeeec
Q 040712 33 GVELTVTGPSDERVRD 48 (179)
Q Consensus 33 ~i~~~v~~P~g~~v~~ 48 (179)
.-.+.++||+|+.+.-
T Consensus 101 ~r~~~~~DPdGn~iei 116 (120)
T cd09011 101 QRVVRFYDPDKHIIEV 116 (120)
T ss_pred cEEEEEECCCCCEEEE
Confidence 3688999999998743
No 131
>COG4676 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.49 E-value=1.4e+02 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCCceEEEEECCCCCeeecccce-----------ee----eeEEEEcccccceeEeEE
Q 040712 30 SDEGVELTVTGPSDERVRDFDRR-----------ST----ATFEFVAYKKGLYKFCFT 72 (179)
Q Consensus 30 ~~~~i~~~v~~P~g~~v~~~~~~-----------~~----g~f~f~~~~~G~y~~Cf~ 72 (179)
++.++++.|..|+|...|..... .. --|+..++..|.|-+-+.
T Consensus 152 d~tdlDlHvvtPdG~Hawygn~~lsngg~LDvDvttGyGPEifa~paP~~G~ylvYVN 209 (268)
T COG4676 152 DNTDLDLHVVTPDGDHAWYGNPVLSNGGALDVDVTTGYGPEIFAMPAPVHGTYLVYVN 209 (268)
T ss_pred CCCceeEEEecCCCceeeecCceecCCcccCcccccCCCcceeccCCCCCccEEEEEE
Confidence 57899999999999877764221 11 247777788898888775
No 132
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.26 E-value=55 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.5
Q ss_pred ceEEEEECCCCCeee
Q 040712 33 GVELTVTGPSDERVR 47 (179)
Q Consensus 33 ~i~~~v~~P~g~~v~ 47 (179)
.-.+.++||+|+.+.
T Consensus 96 ~r~f~~~DPdGn~~~ 110 (113)
T cd08356 96 GREFFLHDPSGVLWH 110 (113)
T ss_pred cEEEEEECCCccEEE
Confidence 467899999999874
No 133
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=26.25 E-value=1.3e+02 Score=16.85 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040712 104 PILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNK 138 (179)
Q Consensus 104 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 138 (179)
.+-..+..+...+.+++...+.+..-....|++.+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888877665554444454443
No 134
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.98 E-value=1.5e+02 Score=17.59 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=25.7
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 97 AKDEHINPILDQIAKLEEALYDIHFQQHWFDA 128 (179)
Q Consensus 97 a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 128 (179)
|-.+.++-+.+.|..|.+....+..+-.++|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888999999999999988888877764
No 135
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=25.93 E-value=95 Score=18.45 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.6
Q ss_pred ccccceeEeEEcCCCC-ceeeEEEE
Q 040712 62 YKKGLYKFCFTNKSPY-HETPDFDI 85 (179)
Q Consensus 62 ~~~G~y~~Cf~n~~s~-~~~V~f~~ 85 (179)
...|.|+.+..|.... .+.+++.+
T Consensus 45 ~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 45 EDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred HHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4679999999998754 45666554
No 136
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=25.81 E-value=48 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=17.6
Q ss_pred cccccCcccHHHHHHHHHHHHHHHH
Q 040712 96 HAKDEHINPILDQIAKLEEALYDIH 120 (179)
Q Consensus 96 ~a~~~~~~~l~~~l~~l~~~l~~i~ 120 (179)
++++++++.|+..|+.|...+..+.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777776654
No 137
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.78 E-value=2.9e+02 Score=20.75 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRR 143 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 143 (179)
++.++..+..+.+.+..+..+.+-+|.|..+-+.........
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e 95 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKE 95 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666667777777777666666555544433
No 138
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=25.76 E-value=31 Score=25.21 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=25.1
Q ss_pred eEEEEECCCCCeeecccceeeeeEEEEc---ccccceeEeEEcC
Q 040712 34 VELTVTGPSDERVRDFDRRSTATFEFVA---YKKGLYKFCFTNK 74 (179)
Q Consensus 34 i~~~v~~P~g~~v~~~~~~~~g~f~f~~---~~~G~y~~Cf~n~ 74 (179)
--+.|+|.+|+++|.++..++-.=.... ++.|.|++--+..
T Consensus 75 tL~~IYD~~G~lLW~qr~vP~l~~~I~~~WL~k~gf~Eidtd~~ 118 (180)
T PF08918_consen 75 TLVLIYDENGKLLWRQRDVPELEKRIQPEWLKKNGFYEIDTDVD 118 (180)
T ss_dssp EEEEEEETTS-EEEESS--HHHHCCS-GGGGGSSEEEEEEEEHH
T ss_pred eEEEEEcCCCcEEEecCccHHHHHhcCHHHccCCCceEEecCcc
Confidence 4568899999999998877643222222 3578888777654
No 139
>PRK14153 heat shock protein GrpE; Provisional
Probab=25.49 E-value=2.9e+02 Score=20.69 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.3
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTM 140 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~ 140 (179)
..++.++..+..+.+.+..+..+.+-+|.|..+-+......
T Consensus 40 ~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~ 80 (194)
T PRK14153 40 SETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKF 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888877777766655554433
No 140
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=25.19 E-value=2.2e+02 Score=26.07 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040712 128 AQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 128 ~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
.|.+|.++...++..-|+.-++-.++.++.+++.+.+.++.||+.
T Consensus 730 ~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~~~ff~~ 774 (798)
T PF02460_consen 730 TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIFRVFFKT 774 (798)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 677788888888888888888888888899999999999999863
No 141
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=25.06 E-value=1.9e+02 Score=18.31 Aligned_cols=27 Identities=15% Similarity=-0.097 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040712 146 YKAMLGSFFLITASFLQIHLLKRLFDR 172 (179)
Q Consensus 146 ~~si~~i~vli~~~~~Qv~~lk~fF~~ 172 (179)
||-.--++..++..+.=.+.+|.+|+.
T Consensus 45 WF~~SCi~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 45 WFFYSCIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344555666667777889999974
No 142
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=24.92 E-value=1.4e+02 Score=20.83 Aligned_cols=46 Identities=26% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCceEEEEECCCC-Ceeecccc-----eeeeeEEEEcc------cccceeEeEEcCCC
Q 040712 31 DEGVELTVTGPSD-ERVRDFDR-----RSTATFEFVAY------KKGLYKFCFTNKSP 76 (179)
Q Consensus 31 ~~~i~~~v~~P~g-~~v~~~~~-----~~~g~f~f~~~------~~G~y~~Cf~n~~s 76 (179)
+..++..|++.++ ++++.... .|...|.|... .+|.|++=+.....
T Consensus 60 ~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~~ 117 (140)
T PF11797_consen 60 KLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKSG 117 (140)
T ss_pred CcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEEcC
Confidence 4677778888775 56665432 24677888765 46899998887654
No 143
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.84 E-value=1.6e+02 Score=21.05 Aligned_cols=42 Identities=7% Similarity=0.054 Sum_probs=28.3
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMS 141 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 141 (179)
.+-+.+++.+....+.+..+..+.+-.+.+............
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344567888888888888888887766666555555554443
No 144
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=24.78 E-value=2e+02 Score=20.13 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=29.4
Q ss_pred CcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEE
Q 040712 11 GDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFT 72 (179)
Q Consensus 11 ~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~ 72 (179)
...|.+++.+=.|++ +=...++- +|.+|++......+.-.|+...+|.|++=..
T Consensus 37 ~v~V~VtwN~WsG~~-------Gd~~kly~-dG~~V~tG~~~~~~~a~~~~~~gG~y~~~Ve 90 (133)
T PF08329_consen 37 QVDVSVTWNVWSGTN-------GDTAKLYF-DGVLVWTGPSPQQKSATFTVTKGGRYQMQVE 90 (133)
T ss_dssp SEEEEEEEE-SSS----------SEEEEEE-TTEEEEEEE--SEEEEEEEE-S-EEEEEEEE
T ss_pred ceEEEEEEEEecCCC-------CCEEEEEE-CCEEEEeCCCccCceEEEEecCCCEEEEEEE
Confidence 455666666555543 33444443 7888887544334555788889998887765
No 145
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.48 E-value=2.3e+02 Score=19.14 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMS 141 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 141 (179)
+..++..+..+...+..|+.....+-+--.+.+--++...
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444433333333333333
No 146
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=24.25 E-value=39 Score=16.76 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=6.8
Q ss_pred HHHHHhhccc
Q 040712 165 LLKRLFDRKQ 174 (179)
Q Consensus 165 ~lk~fF~~k~ 174 (179)
.|.+|++++|
T Consensus 7 SLqRFLeKRK 16 (27)
T PF09425_consen 7 SLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHHH
Confidence 5778888765
No 147
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=24.04 E-value=2.6e+02 Score=20.43 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=14.2
Q ss_pred eeeeEEEEcccccceeEeE
Q 040712 53 STATFEFVAYKKGLYKFCF 71 (179)
Q Consensus 53 ~~g~f~f~~~~~G~y~~Cf 71 (179)
.+|.++|+....|.|-+=.
T Consensus 191 ~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 191 ANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred CCCEEEEecCCCEEEEEEE
Confidence 4788888888888876543
No 148
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.04 E-value=2.5e+02 Score=25.44 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHH
Q 040712 105 ILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSF 153 (179)
Q Consensus 105 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~ 153 (179)
+.+.-+.+......++...+-+-+-+.+..+++|+..+++.+|+-++-+
T Consensus 124 l~~k~~~vs~kt~~l~eace~l~~eq~kl~elae~I~k~L~yF~~le~l 172 (733)
T KOG2604|consen 124 LQKKFEFVSQKTSALHEACEQLLEEQSKLSELAEGIRKKLHYFAELEEL 172 (733)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3333444444555566677777788889999999999999999998876
No 149
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=24.03 E-value=2.5e+02 Score=19.74 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=35.1
Q ss_pred CcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccce---------eeeeEEEEcccccceeEeEEc
Q 040712 11 GDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRR---------STATFEFVAYKKGLYKFCFTN 73 (179)
Q Consensus 11 ~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~---------~~g~f~f~~~~~G~y~~Cf~n 73 (179)
+..+.++....+|.+.| .+.-+.+.+.|++|+++++.... -..+|.-. -..|.|.++.--
T Consensus 28 ~~~L~f~vyr~~G~D~Y--gsfl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv~~-~~~g~~gl~vpL 96 (133)
T PF07680_consen 28 NGTLSFHVYRVEGPDVY--GSFLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYVAK-VKPGKHGLVVPL 96 (133)
T ss_pred CCeEEEEEEEcCCCccC--CceeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEEcc-ccCCceeEEEEc
Confidence 34454544444443322 35678899999999999875322 13444322 346777777643
No 150
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=23.86 E-value=1.1e+02 Score=20.81 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhcccCCc
Q 040712 142 RRAIYKAMLGSFFLITASFLQ--IHLLKRLFDRKQGLS 177 (179)
Q Consensus 142 ~rv~~~si~~i~vli~~~~~Q--v~~lk~fF~~k~~~~ 177 (179)
.-...|++..++.+.++++.. .-++|.+++++|...
T Consensus 25 kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~ 62 (118)
T PF04178_consen 25 KFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIA 62 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 445678888888888877765 667788888877654
No 151
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=23.76 E-value=70 Score=24.53 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCceEEEEECCCCCeeecccce---ee-eeEEE--EcccccceeEeEEc
Q 040712 31 DEGVELTVTGPSDERVRDFDRR---ST-ATFEF--VAYKKGLYKFCFTN 73 (179)
Q Consensus 31 ~~~i~~~v~~P~g~~v~~~~~~---~~-g~f~f--~~~~~G~y~~Cf~n 73 (179)
-..+++.|+|.+|+.+...... .. +.|.. .....|.|+++.-.
T Consensus 28 v~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~ 76 (283)
T PF08842_consen 28 VKRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWG 76 (283)
T ss_dssp --EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEE
T ss_pred EeEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEE
Confidence 3689999999999966553211 12 44544 33467899998865
No 152
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.75 E-value=3.3e+02 Score=20.68 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMS 141 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 141 (179)
.++.++.++..+.+.+..+..+.+-+|.|..+-+.......
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a 79 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYG 79 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777766665555544433
No 153
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.64 E-value=3e+02 Score=20.19 Aligned_cols=53 Identities=17% Similarity=0.023 Sum_probs=38.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSF 153 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~ 153 (179)
....+.+.+++|...|..|..-..-+..|....-.-.......+.-|+.++-.
T Consensus 5 ~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~ 57 (185)
T cd07628 5 EFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESG 57 (185)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 34557777888888887777777766666666666666777777788777754
No 154
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.49 E-value=2.5e+02 Score=21.88 Aligned_cols=54 Identities=4% Similarity=-0.098 Sum_probs=39.4
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHH
Q 040712 100 EHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSF 153 (179)
Q Consensus 100 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~ 153 (179)
+....+.+.+++|...|..+..-..-+..|+..+.+....-..-...||-++--
T Consensus 54 ~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~ 107 (243)
T cd07666 54 EEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE 107 (243)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh
Confidence 446677888888888888888777777777777777777777777777765544
No 155
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=23.37 E-value=1.9e+02 Score=17.78 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=26.2
Q ss_pred CceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCC
Q 040712 32 EGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSP 76 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s 76 (179)
.++.+.+.+++.. ..+ ...|.|++.+ ..|.|.+-|+...-
T Consensus 16 ~~a~V~~~~~~~~-~~T---d~~G~F~i~~-~~g~~~l~is~~Gy 55 (88)
T PF13715_consen 16 PGATVYLKNTKKG-TVT---DENGRFSIKL-PEGDYTLKISYIGY 55 (88)
T ss_pred cCeEEEEeCCcce-EEE---CCCeEEEEEE-cCCCeEEEEEEeCE
Confidence 3555666655411 112 2489999994 58999999987764
No 156
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=23.34 E-value=49 Score=27.96 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=16.7
Q ss_pred EEEcccccceeEeEEcCCC
Q 040712 58 EFVAYKKGLYKFCFTNKSP 76 (179)
Q Consensus 58 ~f~~~~~G~y~~Cf~n~~s 76 (179)
++.+.+.|.+++||.|...
T Consensus 427 s~~C~EpGWFRvcFAn~~~ 445 (471)
T KOG0256|consen 427 SCHCHEPGWFRVCFANMSE 445 (471)
T ss_pred cceecCCCeEEEEeccCCH
Confidence 6888999999999999764
No 157
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=23.21 E-value=1.1e+02 Score=20.37 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQ 123 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q 123 (179)
+++|+++++++|+...+.+.+..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999998888877654
No 158
>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.
Probab=23.19 E-value=2e+02 Score=19.40 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHH
Q 040712 107 DQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFF 154 (179)
Q Consensus 107 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v 154 (179)
+-+.-|++.+..+.+...|.... .......+++.|.++.+++
T Consensus 72 dV~kwl~~~i~~~~~~~~~~~~~------~~~~~e~~~LLw~lL~llv 113 (118)
T PF12932_consen 72 DVIKWLEEKIEELERSLPYLANP------ESRRAEDKLLLWKLLKLLV 113 (118)
T ss_dssp HHHHHHHHHHHHH----------------HHH-TTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccc------ccccchhHHHHHHHHHHHH
Confidence 34556666666666555544433 3345567789999888765
No 159
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.00 E-value=3.6e+02 Score=23.43 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHH
Q 040712 104 PILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150 (179)
Q Consensus 104 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~ 150 (179)
.-...|+.+.+.+.+++.++.-.-.+-.+++....+...|++.-.+.
T Consensus 352 ~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik 398 (508)
T KOG3091|consen 352 QHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIK 398 (508)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777776666667777777777888887765443
No 160
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=22.95 E-value=2.8e+02 Score=19.59 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=27.9
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNK 138 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 138 (179)
.+.+..++.++..+.+.+.....+.+-++.|..+......
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~ 56 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAK 56 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888887777666655555544433
No 161
>PRK06798 fliD flagellar capping protein; Validated
Probab=22.91 E-value=4.8e+02 Score=22.21 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=6.2
Q ss_pred HHHHHHHHhhcc
Q 040712 162 QIHLLKRLFDRK 173 (179)
Q Consensus 162 Qv~~lk~fF~~k 173 (179)
|.-+|..+|..+
T Consensus 426 Q~s~l~~~~~~~ 437 (440)
T PRK06798 426 QLKTIKAMTKQK 437 (440)
T ss_pred HHHHHHHHhccc
Confidence 445555555544
No 162
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.79 E-value=2.1e+02 Score=18.00 Aligned_cols=43 Identities=7% Similarity=-0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHH
Q 040712 108 QIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150 (179)
Q Consensus 108 ~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~ 150 (179)
.|++++..+..+....+-......+...+.++++.-+-.|+=|
T Consensus 9 ~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~I 51 (78)
T PF08651_consen 9 QLRKINPVIEGLIETLRSAKSNMNRVQETVESTNTLLDKWIRI 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666678888999999888888654
No 163
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=3.3e+02 Score=20.28 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAI 145 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~ 145 (179)
.+..++..+..+.+.+..+..+.+-++.|..+.++.+......-+
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~ 88 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKF 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888888888888888888887777776665443333
No 164
>PHA02692 hypothetical protein; Provisional
Probab=22.54 E-value=1.5e+02 Score=18.30 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 040712 152 SFFLITASFLQIHLLK 167 (179)
Q Consensus 152 i~vli~~~~~Qv~~lk 167 (179)
+++.+++.++-..|||
T Consensus 53 ~~~~~~~vll~flYLK 68 (70)
T PHA02692 53 LIAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555666667777776
No 165
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=22.51 E-value=80 Score=15.20 Aligned_cols=14 Identities=0% Similarity=-0.017 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 040712 147 KAMLGSFFLITASF 160 (179)
Q Consensus 147 ~si~~i~vli~~~~ 160 (179)
|+++|+++.+.+..
T Consensus 4 fTLiEllial~i~~ 17 (26)
T TIGR02532 4 FTLIELLVVLAILG 17 (26)
T ss_pred eeHHHHHHHHHHHH
Confidence 56677666555443
No 166
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=22.32 E-value=2.8e+02 Score=19.28 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 123 QHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLL 166 (179)
Q Consensus 123 q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~l 166 (179)
.+-+++-|.|..+...+.......|-++-+++.+++++.-..+|
T Consensus 6 ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~wL 49 (125)
T PF09771_consen 6 CEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHWL 49 (125)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888887776666666655444444
No 167
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=21.95 E-value=2e+02 Score=28.14 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=50.2
Q ss_pred ecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccce-eeeeEEEEcccccceeEeEEcC
Q 040712 7 VECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRR-STATFEFVAYKKGLYKFCFTNK 74 (179)
Q Consensus 7 v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~-~~g~f~f~~~~~G~y~~Cf~n~ 74 (179)
|.+++....|+.+...-++...+.-.+..|.+.|.+|+.+-..--. ..|+...+--.+|.|+|.=.+-
T Consensus 1147 vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~VtdL~PGdYqFVETkA 1215 (1531)
T COG4932 1147 VTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINVTDLAPGDYQFVETKA 1215 (1531)
T ss_pred EeecccccccceEEEEecccccccccCcEEEEEcCCCcEeeccceecCCCcEEecccCCcceeeeeecC
Confidence 3346777888888887665333334678999999999999775222 3688888888999999987754
No 168
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=21.92 E-value=2.7e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040712 104 PILDQIAKLEEALYDIHFQQHWFDAQTE 131 (179)
Q Consensus 104 ~l~~~l~~l~~~l~~i~~~q~~~~~re~ 131 (179)
.|..++-+|+..|..|..+..--+.||.
T Consensus 199 ~lrrQi~klnrRl~~lE~~n~~r~~re~ 226 (246)
T PF05644_consen 199 SLRRQIIKLNRRLQALEEENKERQQREM 226 (246)
T ss_pred HHHHHHHHHhHHHHHHHHHhHHHHhHHH
Confidence 6778888999999988888875555554
No 169
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=2.8e+02 Score=19.10 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=30.4
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040712 99 DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKT 139 (179)
Q Consensus 99 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es 139 (179)
++-++.+++.+..|+-.+..+.+.++-+++|-...+....+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888877776666655544
No 170
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.89 E-value=1.4e+02 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 040712 150 LGSFFLITASFLQIHLLKRLFDRK 173 (179)
Q Consensus 150 ~~i~vli~~~~~Qv~~lk~fF~~k 173 (179)
+|++++.+.++.-++..|+|+++.
T Consensus 49 ~q~v~f~~lsv~~~~l~rr~~~~~ 72 (140)
T COG1585 49 LQLVLFAILSVLLALLGRRFVRRR 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788899999999999999999963
No 171
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=21.86 E-value=1.1e+02 Score=20.10 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQ 123 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q 123 (179)
+++|+.+++++|+...+.+.+-.
T Consensus 32 s~~pi~E~i~kLe~~addL~nsL 54 (96)
T PRK00965 32 DMDPIEEEINKLEALADDLENSL 54 (96)
T ss_pred echHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999888887654
No 172
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=21.75 E-value=1.9e+02 Score=17.09 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=25.8
Q ss_pred CceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCC
Q 040712 32 EGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKS 75 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~ 75 (179)
.+..+.+.+.+|..+-...-.-+| .+.+...|.|.+=+.-..
T Consensus 17 ~~~~v~at~~dG~~~~~~~~~vs~--~~d~~~~G~y~Vt~~y~~ 58 (67)
T PF07523_consen 17 TGLFVTATYSDGTSLPLSDVTVSG--TVDTSKAGTYTVTYTYKG 58 (67)
T ss_dssp HCHEEEEEETTS-ES-GCCSEEES-----TTS-CCEEEEEEECT
T ss_pred cCCEEEEEEcCCCEeceeeeEEEe--eeecCCCceEEEEEEECC
Confidence 467788888899885444433355 677788999998887655
No 173
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=21.68 E-value=1.5e+02 Score=22.72 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=24.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040712 138 KTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRK 173 (179)
Q Consensus 138 es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~k 173 (179)
.+...-+.+|.+++++..+++-++=+|.+-+|+.+|
T Consensus 57 ~~~~~~~s~~~l~qmi~aL~~VI~Liy~l~rwL~rR 92 (219)
T PRK13415 57 EAAASSVSAFDFVKLIGATLFVIFLIYALVKWLNKR 92 (219)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566788888888876666666666665555443
No 174
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.46 E-value=1.2e+02 Score=20.06 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHH
Q 040712 101 HINPILDQIAKLEEALYDIHFQQ 123 (179)
Q Consensus 101 ~~~~l~~~l~~l~~~l~~i~~~q 123 (179)
.++|+.+++++|+...+.+.+-.
T Consensus 31 s~~pi~eqi~kLe~~addl~nsL 53 (97)
T PF05440_consen 31 SMDPINEQIDKLEKAADDLVNSL 53 (97)
T ss_pred echHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999998888755
No 175
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=21.14 E-value=2.6e+02 Score=18.52 Aligned_cols=41 Identities=22% Similarity=0.119 Sum_probs=24.1
Q ss_pred eeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc
Q 040712 5 HNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF 49 (179)
Q Consensus 5 e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~ 49 (179)
-.+. .|+.+++...|.+-... .-..+.+.+++++|..+...
T Consensus 78 ~pv~-~Gdtl~~~~~v~~~~~~---~~v~~~~~~~nq~G~~v~~g 118 (123)
T cd03455 78 APLY-AGDTLRFGGRVTAKRDD---EVVTVELWARNSEGDHVMAG 118 (123)
T ss_pred cccc-CCCEEEEEEEEEeeccC---cEEEEEEEEEcCCCCEEEeE
Confidence 3455 57788888877753210 01246666777888766543
No 176
>PHA01750 hypothetical protein
Probab=20.88 E-value=2e+02 Score=17.55 Aligned_cols=29 Identities=10% Similarity=0.215 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 040712 143 RAIYKAMLGSFFLITASFLQIHL-LKRLFD 171 (179)
Q Consensus 143 rv~~~si~~i~vli~~~~~Qv~~-lk~fF~ 171 (179)
-|+..+++....-++.++.|+|+ +|..|+
T Consensus 4 ~VLvLtlmSTtaTtlFaIiqlYlKIKq~lk 33 (75)
T PHA01750 4 TVLVLTLMSTTATTLFAIIQLYLKIKQALK 33 (75)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888888888876 555554
No 177
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=20.83 E-value=84 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=12.0
Q ss_pred ceEEEEECCCCCeee
Q 040712 33 GVELTVTGPSDERVR 47 (179)
Q Consensus 33 ~i~~~v~~P~g~~v~ 47 (179)
.-.+.+.||+|+.+.
T Consensus 101 ~~~~~~~DPdG~~ie 115 (120)
T cd08350 101 MREFALVDPDGNLLR 115 (120)
T ss_pred eeEEEEECCCCCEEE
Confidence 456899999999774
No 178
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=20.52 E-value=3.1e+02 Score=19.21 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=31.5
Q ss_pred EEEEEEeCCCCCCCCCCceEEEEECCCC---CeeecccceeeeeEEEE----cccccceeEeEEcCC
Q 040712 16 CSFVVVKADNPWHYSDEGVELTVTGPSD---ERVRDFDRRSTATFEFV----AYKKGLYKFCFTNKS 75 (179)
Q Consensus 16 ~~y~v~~~~~~~~~~~~~i~~~v~~P~g---~~v~~~~~~~~g~f~f~----~~~~G~y~~Cf~n~~ 75 (179)
++=.|++.....|+ .+|.+.+...++ ..+.+..-...|++..- ....|.|++=|+...
T Consensus 29 Is~HVLDt~~G~PA--~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 29 LSVHILNQQTGKPA--ADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred eEEEEEeCCCCcCC--CCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 45556664332233 356666654332 23433333346777651 235799999998653
No 179
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=20.49 E-value=93 Score=20.11 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=27.8
Q ss_pred CceEEEEECCCCCeeecccceee---eeEEEEcc---cccceeEeEEcCC
Q 040712 32 EGVELTVTGPSDERVRDFDRRST---ATFEFVAY---KKGLYKFCFTNKS 75 (179)
Q Consensus 32 ~~i~~~v~~P~g~~v~~~~~~~~---g~f~f~~~---~~G~y~~Cf~n~~ 75 (179)
..-.+.|.+|+|+.+-....... ..+....+ ..|.|.+=.....
T Consensus 33 ~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 33 GFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp CC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 35778999999977755433222 34555544 4799999888654
No 180
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.28 E-value=88 Score=20.06 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=10.3
Q ss_pred eEEEEECCCCCee
Q 040712 34 VELTVTGPSDERV 46 (179)
Q Consensus 34 i~~~v~~P~g~~v 46 (179)
-.+.++||+|+.+
T Consensus 98 ~~~~~~DPdGn~i 110 (114)
T cd07261 98 YTFVALDPDGHRL 110 (114)
T ss_pred cEEEEECCCCCEE
Confidence 4578899999876
No 181
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=20.26 E-value=52 Score=19.88 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040712 144 AIYKAMLGSFFLITASFLQIHLL 166 (179)
Q Consensus 144 v~~~si~~i~vli~~~~~Qv~~l 166 (179)
--||-.+-+.|+++.+++|++-+
T Consensus 38 gp~~L~l~iFVV~Gs~ifqiir~ 60 (63)
T PF06624_consen 38 GPWLLGLFIFVVCGSAIFQIIRS 60 (63)
T ss_pred CHHHHhhhheeeEcHHHHHHHHH
Confidence 34666677888889999998754
No 182
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.18 E-value=4e+02 Score=20.29 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040712 102 INPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNK 138 (179)
Q Consensus 102 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 138 (179)
+..++..+..+.+.+..+..+..-+|.|..+-+....
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 106 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIY 106 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555666655655555544443
No 183
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=20.12 E-value=80 Score=20.56 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=10.3
Q ss_pred eEEEEECCCCCee
Q 040712 34 VELTVTGPSDERV 46 (179)
Q Consensus 34 i~~~v~~P~g~~v 46 (179)
-.+.++||+|+.+
T Consensus 106 ~~~~~~DPdG~~i 118 (122)
T cd07235 106 RYAIVKDPDGNLV 118 (122)
T ss_pred EEEEEECCCCCEE
Confidence 4568899999876
No 184
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.08 E-value=1.4e+02 Score=16.84 Aligned_cols=21 Identities=5% Similarity=0.142 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040712 142 RRAIYKAMLGSFFLITASFLQ 162 (179)
Q Consensus 142 ~rv~~~si~~i~vli~~~~~Q 162 (179)
+++-..+++-++++++++++-
T Consensus 15 nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 15 NKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666543
Done!