BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040713
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-----ELPSLEEDGLPTN 50
A L RL + DC L LP +H LT L++L + G LPSL LP N
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 26/100 (26%)
Query: 17 LEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRF 76
L LP GL L+ P LP+ L LWI GN+ ++ G
Sbjct: 96 LPVLPPGLLELSIFSN-------PLTHLPALPSGLCKLWIFGNQLTSLPVLPPG------ 142
Query: 77 SSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIW 116
L+ L++S D+ + S P LPS L +LW +
Sbjct: 143 --LQELSVS--DNQLASLP---------ALPSELCKLWAY 169
>pdb|4AH4|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH4|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH5|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide.
pdb|4AH5|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide
Length = 315
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 55 WIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF------PPELKYFPEKGLPS 108
+++ + IW+ + G+G+H ++ + I G + ++S+ P+L+ + + G
Sbjct: 233 FVNSDNTIWQVXWDHGKGYHDKGTITPV-IQGSEVAIISWGSFANNGPDLRLYFQNGTYI 291
Query: 109 SLLQLWIW 116
S + W+W
Sbjct: 292 SAVSEWVW 299
>pdb|4AGI|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AHB|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 55 WIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF------PPELKYFPEKGLPS 108
+++ + IW+ + G+G+H ++ + I G + ++S+ P+L+ + + G
Sbjct: 233 FVNSDNTIWQVXWDHGKGYHDKGTITPV-IQGSEVAIISWGSFANNGPDLRLYFQNGTYI 291
Query: 109 SLLQLWIW 116
S + W+W
Sbjct: 292 SAVSEWVW 299
>pdb|4AGT|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AGT|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AHA|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHA|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHB|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 55 WIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF------PPELKYFPEKGLPS 108
+++ + IW+ + G+G+H ++ + I G + ++S+ P+L+ + + G
Sbjct: 233 FVNSDNTIWQVCWDHGKGYHDKGTITPV-IQGSEVAIISWGSFANNGPDLRLYFQNGTYI 291
Query: 109 SLLQLWIW 116
S + W+W
Sbjct: 292 SAVSEWVW 299
>pdb|4AHB|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose.
pdb|4AHB|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 55 WIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF------PPELKYFPEKGLPS 108
+++ + IW+ + G+G+H ++ + I G + ++S+ P+L+ + + G
Sbjct: 233 FVNSDNTIWQVCWDHGKGYHDKGTITPV-IQGSEVAIISWGSFANNGPDLRLYFQNGTYI 291
Query: 109 SLLQLWIW 116
S + W+W
Sbjct: 292 SAVSEWVW 299
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 81 HLTISG----CDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119
H T++G C+ D+V YF P+ + QL +WGCP
Sbjct: 68 HDTVAGGDWLCEQDVVD------YFVHH-CPTEMTQLELWGCP 103
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 81 HLTISG----CDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119
H T++G C+ D+V YF P+ + QL +WGCP
Sbjct: 68 HDTVAGGDWLCEQDVVD------YFVHH-CPTEMTQLELWGCP 103
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 81 HLTISG----CDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119
H T++G C+ D+V YF P+ + QL +WGCP
Sbjct: 68 HDTVAGGDWLCEQDVVD------YFVHH-CPTEMTQLELWGCP 103
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 81 HLTISG----CDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119
H T++G C+ D+V YF P+ + QL +WGCP
Sbjct: 68 HDTVAGGDWLCEQDVVD------YFVHH-CPTEMTQLELWGCP 103
>pdb|2RA8|A Chain A, Crystal Structure Of The Q64v53_bacfr Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr43
Length = 362
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 13 DCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRG 72
+ K LE + GL + S+ E +G +LP+LE+ L + DG+ +++ + +
Sbjct: 194 NLKSLEIISGGLPD--SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDXNVFRPLFSK--- 248
Query: 73 FHRFSSLRHLTISGCDDDMV 92
RF +L+ L I ++ V
Sbjct: 249 -DRFPNLKWLGIVDAEEQNV 267
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 37 GELPSLEE-----DGLPTNLHSLWIDGNKKIWKSMIER 69
GELP+L+E G + SL D NKK W++M+ +
Sbjct: 47 GELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTK 84
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 8 RLEIYD--CKRLEALPKGLHNLTSLQELKIGGELPSLEEDGL---PTNLHSLWIDGN 59
R+++ D +++++PK + L +LQEL + DG+ T+L +W+ N
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|4GMO|A Chain A, Crystal Structure Of Syo1
Length = 684
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLE-EDGLPTNLHSLWIDGNKKIW 63
+L RL E+L H L++L I + LE +G N+H+ W KKIW
Sbjct: 424 QLIRLSNLPIDSDESLTIQSHALSALN--NISWTISCLEFANGENANIHNAWYPTAKKIW 481
Query: 64 KSMI 67
+ I
Sbjct: 482 RKTI 485
>pdb|4GMN|A Chain A, Structural Basis Of Rpl5 Recognition By Syo1
Length = 676
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLE-EDGLPTNLHSLWIDGNKKIW 63
+L RL E+L H L++L I + LE +G N+H+ W KKIW
Sbjct: 424 QLIRLSNLPIDSDESLTIQSHALSALN--NISWTISCLEFANGENANIHNAWYPTAKKIW 481
Query: 64 KSMI 67
+ I
Sbjct: 482 RKTI 485
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGL---PTNLHSLWIDGN 59
K+ L++++ R+ ++PK + +L +LQEL + DG+ T+L +W+ N
Sbjct: 451 KVKVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGL---PTNLHSLWIDGN 59
LT L++ C+ + P ++L+SLQ L + DG+ T+L +W+ N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,543,506
Number of Sequences: 62578
Number of extensions: 241026
Number of successful extensions: 434
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 25
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)