Query 040713
Match_columns 157
No_of_seqs 221 out of 1675
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.1 1.9E-10 4E-15 101.8 8.6 111 4-122 778-907 (1153)
2 PLN03210 Resistant to P. syrin 99.0 2.5E-09 5.3E-14 94.8 8.4 105 4-121 611-717 (1153)
3 PLN00113 leucine-rich repeat r 98.7 4.6E-08 9.9E-13 85.3 7.3 104 3-118 92-198 (968)
4 PLN00113 leucine-rich repeat r 98.7 5.2E-08 1.1E-12 85.0 6.8 103 5-118 141-246 (968)
5 PRK15386 type III secretion pr 98.6 4.6E-08 1E-12 77.4 5.3 104 3-121 51-169 (426)
6 KOG0617 Ras suppressor protein 98.6 1.2E-09 2.6E-14 76.8 -3.6 109 4-119 33-161 (264)
7 PF13855 LRR_8: Leucine rich r 98.4 7.8E-07 1.7E-11 52.0 4.5 55 4-59 1-59 (61)
8 KOG0617 Ras suppressor protein 98.4 2.1E-08 4.6E-13 70.6 -2.7 101 5-118 57-183 (264)
9 PF14580 LRR_9: Leucine-rich r 98.3 8.4E-07 1.8E-11 62.9 3.4 103 5-120 20-125 (175)
10 PF13855 LRR_8: Leucine rich r 98.2 3E-06 6.5E-11 49.4 4.9 54 29-86 2-58 (61)
11 PRK15386 type III secretion pr 98.2 3.4E-06 7.3E-11 67.0 6.4 76 4-91 72-169 (426)
12 KOG0472 Leucine-rich repeat pr 98.2 3.1E-07 6.7E-12 72.1 -0.7 103 4-119 435-539 (565)
13 KOG0618 Serine/threonine phosp 98.1 1E-06 2.3E-11 75.0 0.5 41 50-96 384-424 (1081)
14 PLN03150 hypothetical protein; 98.0 1.2E-05 2.5E-10 67.6 6.4 104 6-119 420-526 (623)
15 KOG0444 Cytoskeletal regulator 98.0 9.9E-07 2.1E-11 73.0 -0.0 89 20-120 95-185 (1255)
16 KOG4194 Membrane glycoprotein 98.0 5.8E-07 1.3E-11 73.6 -1.9 106 4-119 317-427 (873)
17 PRK15387 E3 ubiquitin-protein 98.0 1.9E-05 4.2E-10 67.5 6.4 48 5-58 223-271 (788)
18 KOG0444 Cytoskeletal regulator 97.9 5.1E-07 1.1E-11 74.7 -3.2 93 17-122 280-376 (1255)
19 KOG0472 Leucine-rich repeat pr 97.9 1.2E-06 2.6E-11 68.9 -2.4 85 5-96 184-269 (565)
20 KOG0532 Leucine-rich repeat (L 97.8 1.7E-06 3.7E-11 70.5 -1.6 87 6-101 123-211 (722)
21 PRK15370 E3 ubiquitin-protein 97.8 4.5E-05 9.8E-10 65.2 6.6 79 4-95 199-278 (754)
22 PRK15370 E3 ubiquitin-protein 97.8 5.8E-05 1.3E-09 64.6 6.4 79 4-95 220-299 (754)
23 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.4E-10 42.6 2.6 39 4-43 1-40 (44)
24 KOG0618 Serine/threonine phosp 97.8 3.8E-06 8.3E-11 71.7 -1.2 102 4-120 383-488 (1081)
25 KOG4194 Membrane glycoprotein 97.7 2.8E-05 6E-10 64.1 2.5 87 3-96 101-214 (873)
26 PRK15387 E3 ubiquitin-protein 97.6 0.00022 4.7E-09 61.2 7.3 46 8-58 205-251 (788)
27 KOG4658 Apoptotic ATPase [Sign 97.5 3.1E-05 6.7E-10 67.2 1.4 80 3-86 570-651 (889)
28 PF14580 LRR_9: Leucine-rich r 97.5 0.00012 2.7E-09 51.9 4.1 81 25-119 16-99 (175)
29 KOG1259 Nischarin, modulator o 97.3 5.2E-05 1.1E-09 58.0 0.3 57 5-63 285-342 (490)
30 KOG0532 Leucine-rich repeat (L 97.3 4.7E-05 1E-09 62.4 -0.6 99 6-119 145-245 (722)
31 PF12799 LRR_4: Leucine Rich r 97.3 0.00063 1.4E-08 37.0 3.9 39 49-94 1-39 (44)
32 cd00116 LRR_RI Leucine-rich re 97.2 9.3E-05 2E-09 56.4 0.7 11 49-59 137-147 (319)
33 KOG3665 ZYG-1-like serine/thre 97.1 9.5E-05 2.1E-09 62.8 -0.4 75 5-86 123-204 (699)
34 KOG4658 Apoptotic ATPase [Sign 97.0 0.00035 7.7E-09 60.8 2.2 86 4-95 545-635 (889)
35 COG4886 Leucine-rich repeat (L 97.0 0.00036 7.9E-09 55.2 1.6 84 5-96 117-203 (394)
36 KOG4237 Extracellular matrix p 96.9 6.3E-05 1.4E-09 59.2 -2.8 79 4-86 67-149 (498)
37 PLN03150 hypothetical protein; 96.9 0.0022 4.8E-08 54.1 5.6 87 3-94 441-531 (623)
38 KOG1259 Nischarin, modulator o 96.8 0.00021 4.5E-09 54.9 -0.9 102 4-119 307-410 (490)
39 KOG3665 ZYG-1-like serine/thre 96.7 0.0007 1.5E-08 57.6 1.7 106 4-117 148-259 (699)
40 COG4886 Leucine-rich repeat (L 96.6 0.00077 1.7E-08 53.3 1.1 76 5-86 141-218 (394)
41 cd00116 LRR_RI Leucine-rich re 96.5 0.0016 3.5E-08 49.6 2.3 12 108-119 250-261 (319)
42 KOG3207 Beta-tubulin folding c 96.4 0.00051 1.1E-08 54.8 -1.1 80 3-86 145-231 (505)
43 KOG1859 Leucine-rich repeat pr 96.0 0.00017 3.7E-09 60.9 -5.8 102 4-119 187-290 (1096)
44 KOG2120 SCF ubiquitin ligase, 96.0 0.0019 4.2E-08 49.5 0.1 103 4-118 234-373 (419)
45 KOG0531 Protein phosphatase 1, 95.8 0.0036 7.8E-08 50.1 1.0 76 4-86 95-171 (414)
46 PF00560 LRR_1: Leucine Rich R 95.8 0.0048 1E-07 28.2 1.0 21 5-26 1-21 (22)
47 KOG4237 Extracellular matrix p 95.6 0.0041 8.9E-08 49.3 0.6 77 4-85 274-354 (498)
48 PF13504 LRR_7: Leucine rich r 95.3 0.011 2.3E-07 25.4 1.1 17 4-21 1-17 (17)
49 KOG0531 Protein phosphatase 1, 95.2 0.0081 1.7E-07 48.1 1.2 82 22-118 89-172 (414)
50 KOG3207 Beta-tubulin folding c 94.6 0.014 3E-07 46.9 0.8 33 4-37 197-231 (505)
51 KOG4579 Leucine-rich repeat (L 94.0 0.0039 8.4E-08 42.8 -2.8 83 6-96 29-117 (177)
52 KOG1644 U2-associated snRNP A' 93.8 0.25 5.5E-06 36.0 5.9 75 7-86 45-122 (233)
53 KOG2739 Leucine-rich acidic nu 93.8 0.017 3.7E-07 43.2 -0.0 12 26-37 63-74 (260)
54 KOG2739 Leucine-rich acidic nu 93.7 0.036 7.7E-07 41.5 1.5 87 25-120 40-128 (260)
55 PF13306 LRR_5: Leucine rich r 93.5 0.34 7.3E-06 31.7 5.8 76 4-86 12-90 (129)
56 KOG1859 Leucine-rich repeat pr 93.2 0.0036 7.8E-08 53.3 -4.9 90 15-118 174-264 (1096)
57 KOG3864 Uncharacterized conser 92.5 0.019 4.1E-07 41.6 -1.4 62 49-121 125-189 (221)
58 KOG1947 Leucine rich repeat pr 91.4 0.04 8.6E-07 44.2 -1.0 33 4-36 188-222 (482)
59 KOG3864 Uncharacterized conser 90.4 0.18 3.9E-06 36.7 1.8 65 50-123 102-166 (221)
60 KOG2123 Uncharacterized conser 90.0 0.015 3.3E-07 44.4 -4.1 83 5-93 20-103 (388)
61 KOG2982 Uncharacterized conser 89.8 0.069 1.5E-06 41.3 -0.8 75 5-86 72-155 (418)
62 KOG4341 F-box protein containi 89.7 0.16 3.4E-06 40.8 1.1 113 4-122 320-440 (483)
63 smart00367 LRR_CC Leucine-rich 88.9 0.3 6.4E-06 23.0 1.4 16 3-18 1-16 (26)
64 KOG2120 SCF ubiquitin ligase, 88.5 0.2 4.3E-06 38.8 0.9 83 4-89 286-375 (419)
65 KOG1644 U2-associated snRNP A' 88.4 1.2 2.6E-05 32.6 4.7 59 27-92 41-101 (233)
66 KOG4579 Leucine-rich repeat (L 88.4 0.088 1.9E-06 36.3 -1.0 59 49-119 53-111 (177)
67 KOG1909 Ran GTPase-activating 86.3 0.24 5.2E-06 38.9 0.2 37 3-40 91-133 (382)
68 KOG2123 Uncharacterized conser 83.1 0.026 5.7E-07 43.1 -6.0 79 27-119 18-99 (388)
69 PF13306 LRR_5: Leucine rich r 83.1 6.8 0.00015 25.3 6.2 78 24-116 8-89 (129)
70 smart00364 LRR_BAC Leucine-ric 79.9 1.2 2.6E-05 21.2 1.2 18 4-22 2-19 (26)
71 COG5238 RNA1 Ran GTPase-activa 77.7 1.8 3.9E-05 33.3 2.1 40 3-42 91-135 (388)
72 KOG1947 Leucine rich repeat pr 77.6 1 2.3E-05 36.0 0.9 85 3-91 213-308 (482)
73 PF05725 FNIP: FNIP Repeat; I 77.3 5.3 0.00012 21.2 3.4 9 48-56 11-19 (44)
74 KOG4341 F-box protein containi 68.5 2.1 4.5E-05 34.7 0.6 45 76-123 371-416 (483)
75 PF13516 LRR_6: Leucine Rich r 65.6 4.1 8.8E-05 18.4 1.1 12 4-15 2-13 (24)
76 KOG2982 Uncharacterized conser 56.7 5.1 0.00011 31.3 0.8 55 3-58 96-155 (418)
77 smart00365 LRR_SD22 Leucine-ri 42.8 21 0.00046 16.8 1.5 10 77-86 2-11 (26)
78 smart00368 LRR_RI Leucine rich 29.5 37 0.0008 15.9 1.1 11 4-14 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.13 E-value=1.9e-10 Score=101.81 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=76.2
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecCCCCchhhhhhcc-----------
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERG----------- 70 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~----------- 70 (157)
++|+.|++++|..+..+|..++++++|+.|++++ .+..+|....+++|+.|++++|..+. .+|...
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccccccccCEeECCCC
Confidence 5889999999888888999999999999999987 78888876666788999998887775 554310
Q ss_pred ------ccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713 71 ------RGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIA 122 (157)
Q Consensus 71 ------~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~ 122 (157)
..+..+++|+.|++.+ |+.++.+|..+..+ ++|+.+++.+|+.+.
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~-C~~L~~l~~~~~~L------~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNG-CNNLQRVSLNISKL------KHLETVDFSDCGALT 907 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCC-CCCcCccCcccccc------cCCCeeecCCCcccc
Confidence 0133445555555555 55555544433333 456666666666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.95 E-value=2.5e-09 Score=94.82 Aligned_cols=105 Identities=24% Similarity=0.446 Sum_probs=79.5
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
.+|+.|++.++ .++.++.++..+++|+.|++++ .+..+|.....++|+.|++.+|..+. .+|. .++.+++|+.
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~---si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPS---SIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccch---hhhccCCCCE
Confidence 46777777774 5777777778888899999887 67777766666789999999998887 7887 5788899999
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhH
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLI 121 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l 121 (157)
|++++ |..++.+|..+ . +++|+.|.+++|..+
T Consensus 686 L~L~~-c~~L~~Lp~~i-~------l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 686 LDMSR-CENLEILPTGI-N------LKSLYRLNLSGCSRL 717 (1153)
T ss_pred EeCCC-CCCcCccCCcC-C------CCCCCEEeCCCCCCc
Confidence 99998 88877777533 1 256666666666543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.69 E-value=4.6e-08 Score=85.31 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=64.6
Q ss_pred CCCcceEeeecCcCCcccCcccC-CCCcccEEEeeC-cccC-CCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLH-NLTSLQELKIGG-ELPS-LEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~-~l~~-lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
.++|+.|+++++.--..+|..+. .+++|++|++++ .+.. +|. +..++|++|++++|. +...+|. .++++++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~-~~~~~p~---~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNM-LSGEIPN---DIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCc-ccccCCh---HHhcCCCC
Confidence 35788888888643346776654 788888888887 5543 343 344578888887753 3325555 46777888
Q ss_pred CEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 80 RHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
++|++++ |.....+|..+..+ ++|+.|++.+|
T Consensus 167 ~~L~L~~-n~l~~~~p~~~~~l------~~L~~L~L~~n 198 (968)
T PLN00113 167 KVLDLGG-NVLVGKIPNSLTNL------TSLEFLTLASN 198 (968)
T ss_pred CEEECcc-CcccccCChhhhhC------cCCCeeeccCC
Confidence 8888877 55444555433333 34444444443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.66 E-value=5.2e-08 Score=84.97 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=49.5
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
+|++|++++|.-...+|..++++++|++|++++ .+. .+|.. +..++|++|++++|.-.. .+|. .++++++|++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~---~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPR---ELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCCh---HHcCcCCccE
Confidence 455555555432234555555666666666665 333 22321 122456666665543222 4444 3555566666
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
|++++ |.....+|..+..+ ++|++|++.+|
T Consensus 217 L~L~~-n~l~~~~p~~l~~l------~~L~~L~L~~n 246 (968)
T PLN00113 217 IYLGY-NNLSGEIPYEIGGL------TSLNHLDLVYN 246 (968)
T ss_pred EECcC-CccCCcCChhHhcC------CCCCEEECcCc
Confidence 66655 43333344333332 45555555544
No 5
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.64 E-value=4.6e-08 Score=77.41 Aligned_cols=104 Identities=31% Similarity=0.437 Sum_probs=75.6
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
+.+++.|++++| .++.+|. -.++|+.|.+++ .+..+|. .++++|+.|.|++|..+. .+|. +|+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~-sLP~---------sLe 115 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEIS-GLPE---------SVR 115 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccc-cccc---------ccc
Confidence 357889999998 7888883 345799999987 7777774 467899999999998886 6664 355
Q ss_pred EEEEecC-CCCCcccCcccccCCC------------CCCCCCccEEeeeCChhH
Q 040713 81 HLTISGC-DDDMVSFPPELKYFPE------------KGLPSSLLQLWIWGCPLI 121 (157)
Q Consensus 81 ~L~i~~~-c~~l~~lp~~l~~lp~------------~~l~~~L~~L~i~~c~~l 121 (157)
.|.+.+. |..+..+|..|+.|.- ..+|++|+.|.+.+|..+
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 5555430 4457778877666532 135679999999988754
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-09 Score=76.84 Aligned_cols=109 Identities=20% Similarity=0.346 Sum_probs=67.4
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
.+.++|.+++ +++..+|+.+..+.+|+.|++++ +++.+|... -.+.|+.|.+. .+.+. .+|. ++++++.|+.
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~-~lpr---gfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLN-ILPR---GFGSFPALEV 106 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhh-cCcc---ccCCCchhhh
Confidence 4567777777 47777787788888888888887 777777542 22466666663 35554 5665 4777777777
Q ss_pred EEEecCCCC-CcccCc----------------ccccCCCC-CCCCCccEEeeeCCh
Q 040713 82 LTISGCDDD-MVSFPP----------------ELKYFPEK-GLPSSLLQLWIWGCP 119 (157)
Q Consensus 82 L~i~~~c~~-l~~lp~----------------~l~~lp~~-~l~~~L~~L~i~~c~ 119 (157)
|++.+ .+. -.++|- .++.+|.. |-.++||.|.+++..
T Consensus 107 ldlty-nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 107 LDLTY-NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhccc-cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 77765 221 122332 22333333 334777888777765
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=7.8e-07 Score=51.96 Aligned_cols=55 Identities=27% Similarity=0.506 Sum_probs=32.2
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCC--CCccEEEecCC
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGN 59 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c 59 (157)
|+|++|++++| .+..+|. .+..+++|++|++++ .+..++++.+. ++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46677777765 5666664 445666666666666 55555554332 45666665554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.36 E-value=2.1e-08 Score=70.61 Aligned_cols=101 Identities=25% Similarity=0.393 Sum_probs=57.7
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCC-----------------------
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGN----------------------- 59 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c----------------------- 59 (157)
+|+.|++++ +.++.+|..+..+++|+.|++.- .+..+|.+ |-.|.|+.|++.+.
T Consensus 57 nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 57 NLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 455566655 35666666666666666666655 55555543 22235555555442
Q ss_pred -CCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 60 -KKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 60 -~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
+..+ .+|. .++.+++|+.|.+++ +.+-++|.++..+ ..|++|+|.+.
T Consensus 136 dndfe-~lp~---dvg~lt~lqil~lrd--ndll~lpkeig~l------t~lrelhiqgn 183 (264)
T KOG0617|consen 136 DNDFE-ILPP---DVGKLTNLQILSLRD--NDLLSLPKEIGDL------TRLRELHIQGN 183 (264)
T ss_pred CCCcc-cCCh---hhhhhcceeEEeecc--CchhhCcHHHHHH------HHHHHHhcccc
Confidence 2333 4455 367788888888887 5565666654444 55666666554
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=8.4e-07 Score=62.87 Aligned_cols=103 Identities=22% Similarity=0.335 Sum_probs=35.9
Q ss_pred CcceEeeecCcCCcccCcccC-CCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccC-CCCCccCE
Q 040713 5 KLTRLEIYDCKRLEALPKGLH-NLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGF-HRFSSLRH 81 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l-~~l~~L~~ 81 (157)
.+++|++.++ .+..+. .++ .+.+|+.|++++ .+..+..-...++|+.|++++ +.++ .+.+ .+ ..+++|++
T Consensus 20 ~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~-N~I~-~i~~---~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN-NRIS-SISE---GLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--S-S----S-CH---HHHHH-TT--E
T ss_pred cccccccccc-cccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCC-CCCC-cccc---chHHhCCcCCE
Confidence 5788999985 566654 565 688999999999 888776544457999999987 5676 5643 23 35899999
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChh
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPL 120 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~ 120 (157)
|++++ +++..+-+ +..+ .-.++|+.|++.++|-
T Consensus 93 L~L~~--N~I~~l~~-l~~L---~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSN--NKISDLNE-LEPL---SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TT--S---SCCC-CGGG---GG-TT--EEE-TT-GG
T ss_pred EECcC--CcCCChHH-hHHH---HcCCCcceeeccCCcc
Confidence 99998 65654431 2222 1137899999999883
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=3e-06 Score=49.44 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=24.9
Q ss_pred cccEEEeeC-cccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713 29 SLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 29 ~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~ 86 (157)
+|++|++++ .+..+|.+.+. ++|+.|++++ +.++ .++.. .+.++++|++|++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~-~i~~~--~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLT-SIPPD--AFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSES-EEETT--TTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccC-ccCHH--HHcCCCCCCEEeCcC
Confidence 445555555 44444443322 4555555543 2443 44433 344555555555544
No 11
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=3.4e-06 Score=67.00 Aligned_cols=76 Identities=29% Similarity=0.540 Sum_probs=50.0
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecC--CCCchhhhhhccccCCC----
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDG--NKKIWKSMIERGRGFHR---- 75 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~--c~~l~~~lp~~~~~l~~---- 75 (157)
++|++|.+++|.+++.+|..+ .++|++|.+++ .+..+|. +|+.|.+.. |..+. .+|. ++..
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L~L~~n~~~~L~-~LPs---sLk~L~I~ 140 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSLEIKGSATDSIK-NVPN---GLTSLSIN 140 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceEEeCCCCCcccc-cCcc---hHhheecc
Confidence 489999999999998888655 35788888887 5655543 566666643 12233 3443 1211
Q ss_pred -------------C-CccCEEEEecCCCCC
Q 040713 76 -------------F-SSLRHLTISGCDDDM 91 (157)
Q Consensus 76 -------------l-~~L~~L~i~~~c~~l 91 (157)
+ ++|++|.+.+ |..+
T Consensus 141 ~~n~~~~~~lp~~LPsSLk~L~Is~-c~~i 169 (426)
T PRK15386 141 SYNPENQARIDNLISPSLKTLSLTG-CSNI 169 (426)
T ss_pred ccccccccccccccCCcccEEEecC-CCcc
Confidence 2 4788899988 7754
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.15 E-value=3.1e-07 Score=72.13 Aligned_cols=103 Identities=27% Similarity=0.390 Sum_probs=69.0
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
++|..|++++ +-+-.+|..++.+..|+.|+|+. .+..+|.-... ..++.+-.++ +.+. .+++. ++.+|.+|..
T Consensus 435 ~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~-~vd~~--~l~nm~nL~t 509 (565)
T KOG0472|consen 435 QKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIG-SVDPS--GLKNMRNLTT 509 (565)
T ss_pred hcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-cccc-ccChH--Hhhhhhhcce
Confidence 4566667766 35666777777777777777776 66666543221 2333333333 4554 56654 5888889999
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++.+ +.+..+|..++.. .+|++|.+++.|
T Consensus 510 LDL~n--Ndlq~IPp~Lgnm------tnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQN--NDLQQIPPILGNM------TNLRHLELDGNP 539 (565)
T ss_pred eccCC--CchhhCChhhccc------cceeEEEecCCc
Confidence 99987 7777777777766 899999999887
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.06 E-value=1e-06 Score=75.01 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=25.2
Q ss_pred CccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc
Q 040713 50 NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP 96 (157)
Q Consensus 50 ~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~ 96 (157)
+|+.|++++ +.+. .+|.. .+.++..|++|+++| +.++.+|.
T Consensus 384 hLKVLhLsy-NrL~-~fpas--~~~kle~LeeL~LSG--NkL~~Lp~ 424 (1081)
T KOG0618|consen 384 HLKVLHLSY-NRLN-SFPAS--KLRKLEELEELNLSG--NKLTTLPD 424 (1081)
T ss_pred ceeeeeecc-cccc-cCCHH--HHhchHHhHHHhccc--chhhhhhH
Confidence 566666665 3454 56654 456666666777766 55655554
No 14
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=1.2e-05 Score=67.56 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=75.7
Q ss_pred cceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++.|++.++.--..+|..+..+++|+.|++++ .+. .+|.. +..++|+.|+++++ .+...+|+ .++++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~---~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPE---SLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCch---HHhcCCCCCEE
Confidence 66788888654456888889999999999998 765 45532 34579999999886 55547777 58899999999
Q ss_pred EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++++ +.....+|..+..+. .++..+.+.+++
T Consensus 496 ~Ls~-N~l~g~iP~~l~~~~-----~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNG-NSLSGRVPAALGGRL-----LHRASFNFTDNA 526 (623)
T ss_pred ECcC-CcccccCChHHhhcc-----ccCceEEecCCc
Confidence 9998 665557776554431 345566666554
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.03 E-value=9.9e-07 Score=73.01 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=55.4
Q ss_pred cCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcc
Q 040713 20 LPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE 97 (157)
Q Consensus 20 lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~ 97 (157)
+|..+..+.-|..|++++ ++..+|.+- ...++-.|.+++ ++++ .+|.. .+-+++.|-.|+++. +.++.+|..
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~Ie-tIPn~--lfinLtDLLfLDLS~--NrLe~LPPQ 168 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIE-TIPNS--LFINLTDLLFLDLSN--NRLEMLPPQ 168 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-Cccc-cCCch--HHHhhHhHhhhcccc--chhhhcCHH
Confidence 555666666666666666 666666531 234555666665 4555 66653 344566666677776 666666666
Q ss_pred cccCCCCCCCCCccEEeeeCChh
Q 040713 98 LKYFPEKGLPSSLLQLWIWGCPL 120 (157)
Q Consensus 98 l~~lp~~~l~~~L~~L~i~~c~~ 120 (157)
++.+ ..|++|.++++|-
T Consensus 169 ~RRL------~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 169 IRRL------SMLQTLKLSNNPL 185 (1255)
T ss_pred HHHH------hhhhhhhcCCChh
Confidence 6665 6777777777763
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.00 E-value=5.8e-07 Score=73.55 Aligned_cols=106 Identities=24% Similarity=0.399 Sum_probs=51.8
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+.|+.|++++ +.+.++++ .+..+..|+.|++++ .+..+.++.| .++|+.|+++++ .+.-.+.+....+.+|++|
T Consensus 317 qkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 317 QKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred ccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhh
Confidence 3444455544 23444432 223444444444444 4444433322 256777777653 3321222221235567888
Q ss_pred CEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+.|.+.+ ++++++|. .+..+ .+|++|++.++.
T Consensus 395 rkL~l~g--Nqlk~I~krAfsgl------~~LE~LdL~~Na 427 (873)
T KOG4194|consen 395 RKLRLTG--NQLKSIPKRAFSGL------EALEHLDLGDNA 427 (873)
T ss_pred hheeecC--ceeeecchhhhccC------cccceecCCCCc
Confidence 8888887 65665554 11222 466777666544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.96 E-value=1.9e-05 Score=67.51 Aligned_cols=48 Identities=38% Similarity=0.484 Sum_probs=27.3
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG 58 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~ 58 (157)
+|+.|.+.+ ++++.+|.. +++|++|++++ .+..+|. .+++|+.|++.+
T Consensus 223 ~L~~L~L~~-N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~ 271 (788)
T PRK15387 223 HITTLVIPD-NNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 271 (788)
T ss_pred CCCEEEccC-CcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccC
Confidence 566666666 356666642 45666666666 6665553 234555555544
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.94 E-value=5.1e-07 Score=74.67 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=49.7
Q ss_pred CcccCcccCCCCcccEEEeeC---cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCc
Q 040713 17 LEALPKGLHNLTSLQELKIGG---ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMV 92 (157)
Q Consensus 17 l~~lp~~~~~l~~L~~L~l~~---~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~ 92 (157)
++.+|..+..++.|+.|+..+ ....+|.+ |.+.+|+.+...+ ++++ .+|+ ++.....|+.|.+. |+.+-
T Consensus 280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LE-lVPE---glcRC~kL~kL~L~--~NrLi 352 (1255)
T KOG0444|consen 280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLE-LVPE---GLCRCVKLQKLKLD--HNRLI 352 (1255)
T ss_pred hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccc-cCch---hhhhhHHHHHhccc--cccee
Confidence 334444444444444444444 33334432 2233455554443 3454 4555 45555666666655 35454
Q ss_pred ccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713 93 SFPPELKYFPEKGLPSSLLQLWIWGCPLIA 122 (157)
Q Consensus 93 ~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~ 122 (157)
.+|+.+.- .+.|+.|+++.+|++.
T Consensus 353 TLPeaIHl------L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 353 TLPEAIHL------LPDLKVLDLRENPNLV 376 (1255)
T ss_pred echhhhhh------cCCcceeeccCCcCcc
Confidence 55544444 4789999999998875
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.85 E-value=1.2e-06 Score=68.92 Aligned_cols=85 Identities=24% Similarity=0.284 Sum_probs=50.4
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
.|++|+... +.++.+|+.++.+.+|.-|++.. .+..+|+-+--+.|+.|++.. +.++ .+|.+ .+.++++|..|+
T Consensus 184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~-N~i~-~lpae--~~~~L~~l~vLD 258 (565)
T KOG0472|consen 184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE-NQIE-MLPAE--HLKHLNSLLVLD 258 (565)
T ss_pred HHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc-cHHH-hhHHH--Hhcccccceeee
Confidence 355566554 46788888888888888888888 666666421113455555533 3444 45543 344555555555
Q ss_pred EecCCCCCcccCc
Q 040713 84 ISGCDDDMVSFPP 96 (157)
Q Consensus 84 i~~~c~~l~~lp~ 96 (157)
+++ ++++++|.
T Consensus 259 LRd--Nklke~Pd 269 (565)
T KOG0472|consen 259 LRD--NKLKEVPD 269 (565)
T ss_pred ccc--cccccCch
Confidence 555 55555554
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.85 E-value=1.7e-06 Score=70.51 Aligned_cols=87 Identities=33% Similarity=0.501 Sum_probs=45.8
Q ss_pred cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
|++|+++. +.+..+|..+..++ |+.|.+++ +++.+|++ +...+|..|+.+.| ++. .+|. .++.+.+|+.|.
T Consensus 123 lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~-slps---ql~~l~slr~l~ 195 (722)
T KOG0532|consen 123 LTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQ-SLPS---QLGYLTSLRDLN 195 (722)
T ss_pred HHHhhhcc-chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhh-hchH---HhhhHHHHHHHH
Confidence 44555555 35555666555554 66666666 66666654 33445666666543 443 4554 255555555555
Q ss_pred EecCCCCCcccCcccccC
Q 040713 84 ISGCDDDMVSFPPELKYF 101 (157)
Q Consensus 84 i~~~c~~l~~lp~~l~~l 101 (157)
++. +.+..+|+++..|
T Consensus 196 vrR--n~l~~lp~El~~L 211 (722)
T KOG0532|consen 196 VRR--NHLEDLPEELCSL 211 (722)
T ss_pred Hhh--hhhhhCCHHHhCC
Confidence 554 4444444433333
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.84 E-value=4.5e-05 Score=65.22 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=49.0
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|+.|+++++ +++.+|..+. ++|+.|++++ .+..+|. .++++|+.|++++| .+. .+|.+ + .++|+.|
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N-~L~-~LP~~---l--~s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSIN-RIT-ELPER---L--PSALQSL 267 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCC-ccC-cCChh---H--hCCCCEE
Confidence 46777777774 6777776543 5777777777 7777765 34456777777664 454 56542 2 2456777
Q ss_pred EEecCCCCCcccC
Q 040713 83 TISGCDDDMVSFP 95 (157)
Q Consensus 83 ~i~~~c~~l~~lp 95 (157)
++++ +.+..+|
T Consensus 268 ~Ls~--N~L~~LP 278 (754)
T PRK15370 268 DLFH--NKISCLP 278 (754)
T ss_pred ECcC--CccCccc
Confidence 7764 4454444
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.78 E-value=5.8e-05 Score=64.57 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=48.3
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|+.|++++| .++.+|..+ ..+|+.|++++ .+..+|.. ++++|+.|++++ +++. .+|.. +. ++|+.|
T Consensus 220 ~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~-N~L~-~LP~~---l~--~sL~~L 288 (754)
T PRK15370 220 GNIKTLYANSN-QLTSIPATL--PDTIQEMELSINRITELPER-LPSALQSLDLFH-NKIS-CLPEN---LP--EELRYL 288 (754)
T ss_pred cCCCEEECCCC-ccccCChhh--hccccEEECcCCccCcCChh-HhCCCCEEECcC-CccC-ccccc---cC--CCCcEE
Confidence 47888888875 577777644 24677777777 66666643 445677777753 4565 56542 21 366666
Q ss_pred EEecCCCCCcccC
Q 040713 83 TISGCDDDMVSFP 95 (157)
Q Consensus 83 ~i~~~c~~l~~lp 95 (157)
++++ +.++.+|
T Consensus 289 ~Ls~--N~Lt~LP 299 (754)
T PRK15370 289 SVYD--NSIRTLP 299 (754)
T ss_pred ECCC--CccccCc
Confidence 6666 3454444
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.5e-05 Score=42.64 Aligned_cols=39 Identities=23% Similarity=0.510 Sum_probs=30.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLE 43 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp 43 (157)
++|++|+++++ .++.+|..++++++|+.|++++ .+..++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47899999885 7888887788999999999988 766654
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.75 E-value=3.8e-06 Score=71.70 Aligned_cols=102 Identities=27% Similarity=0.440 Sum_probs=64.6
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|+.|++++ +.+.++|.. +.++..|+.|++++ .++.+|... ..+.|++|...+ +.+. .+|+ +..++.|+
T Consensus 383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~-~fPe----~~~l~qL~ 455 (1081)
T KOG0618|consen 383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLL-SFPE----LAQLPQLK 455 (1081)
T ss_pred cceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Ccee-echh----hhhcCcce
Confidence 4677777777 456667653 35777777777777 777776432 224667776654 3454 6774 56677888
Q ss_pred EEEEecCCCCCcccCcccccCCCCCCC-CCccEEeeeCChh
Q 040713 81 HLTISGCDDDMVSFPPELKYFPEKGLP-SSLLQLWIWGCPL 120 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~-~~L~~L~i~~c~~ 120 (157)
.++++ |+++..+ .+|+ ..| ++|++|+++++..
T Consensus 456 ~lDlS--~N~L~~~-----~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLS--CNNLSEV-----TLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecc--cchhhhh-----hhhh-hCCCcccceeeccCCcc
Confidence 88887 4655332 1111 233 7899999988774
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.66 E-value=2.8e-05 Score=64.05 Aligned_cols=87 Identities=18% Similarity=0.370 Sum_probs=52.7
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-c------------------------ccCCCCCCCC--CCccEEE
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-E------------------------LPSLEEDGLP--TNLHSLW 55 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~------------------------l~~lp~~~~~--~~L~~L~ 55 (157)
.|||+.+.+.+ +.++.+|....-..+|+.|.+.+ . |..++...+| .++++|+
T Consensus 101 l~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 36788888877 46777776554444455555555 3 3334433444 4677777
Q ss_pred ecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc
Q 040713 56 IDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP 96 (157)
Q Consensus 56 i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~ 96 (157)
+++ +.++ .+..+ .+.++.+|..|.++. +.+..+|.
T Consensus 180 La~-N~It-~l~~~--~F~~lnsL~tlkLsr--NrittLp~ 214 (873)
T KOG4194|consen 180 LAS-NRIT-TLETG--HFDSLNSLLTLKLSR--NRITTLPQ 214 (873)
T ss_pred ecc-cccc-ccccc--cccccchheeeeccc--CcccccCH
Confidence 765 3454 45444 566677777777776 55666655
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.61 E-value=0.00022 Score=61.25 Aligned_cols=46 Identities=33% Similarity=0.497 Sum_probs=20.4
Q ss_pred eEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713 8 RLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG 58 (157)
Q Consensus 8 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~ 58 (157)
.|+++++ +++.+|..+. ++|+.|++.+ ++..+|. .+++|++|++++
T Consensus 205 ~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~ 251 (788)
T PRK15387 205 VLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSG 251 (788)
T ss_pred EEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecC
Confidence 3444443 4444444332 2444555554 4444443 234455555544
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.54 E-value=3.1e-05 Score=67.25 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=61.8
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
.|.|..|++++|..+..+|..++.+-+|++|++++ .+..+|.+ +....|.+|++..+..+. .+|. ....+++|+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~---i~~~L~~Lr 645 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPG---ILLELQSLR 645 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccc---hhhhccccc
Confidence 36899999999999999999999999999999999 99988875 234577788887766664 4432 344477777
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 777754
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.53 E-value=0.00012 Score=51.86 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccc-cC
Q 040713 25 HNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK-YF 101 (157)
Q Consensus 25 ~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~-~l 101 (157)
.+..+++.|++.+ .|+.+...+ ...+|+.|++++| .++ .++ ++..++.|++|++++ +.++++...+. .+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~-~l~----~l~~L~~L~~L~L~~--N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QIT-KLE----GLPGLPRLKTLDLSN--NRISSISEGLDKNL 87 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S---T----T----TT--EEE--S--S---S-CHHHHHH-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCC-CCc-ccc----CccChhhhhhcccCC--CCCCccccchHHhC
Confidence 3556789999999 777775544 3568999999985 676 665 478899999999998 76666543332 34
Q ss_pred CCCCCCCCccEEeeeCCh
Q 040713 102 PEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 102 p~~~l~~~L~~L~i~~c~ 119 (157)
++|++|++.++.
T Consensus 88 ------p~L~~L~L~~N~ 99 (175)
T PF14580_consen 88 ------PNLQELYLSNNK 99 (175)
T ss_dssp ------TT--EEE-TTS-
T ss_pred ------CcCCEEECcCCc
Confidence 689999997643
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.35 E-value=5.2e-05 Score=58.03 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=40.5
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCch
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIW 63 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~ 63 (157)
.|+.+++++ +.++.+.+.+.-+|.++.|+++. .+..+....+.++|+.|+++++ .+.
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N-~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGN-LLA 342 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccc-hhH
Confidence 467788877 46777777777788888888887 6666655555678888888763 443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.28 E-value=4.7e-05 Score=62.35 Aligned_cols=99 Identities=24% Similarity=0.374 Sum_probs=58.7
Q ss_pred cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
|+.|.+++ ++++.+|+.++.+..|..|+.+. .+.++|.. +.+.+|+.|.+... .+. .+|++ +..| .|..|+
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~-~lp~E---l~~L-pLi~lD 217 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLE-DLPEE---LCSL-PLIRLD 217 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhh-hCCHH---HhCC-ceeeee
Confidence 55666666 57888888888777777777777 66666643 33346666666553 443 55553 3332 355566
Q ss_pred EecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 84 ISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 84 i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++ |+++..||-.+..+ ..|++|-+.++|
T Consensus 218 fS--cNkis~iPv~fr~m------~~Lq~l~LenNP 245 (722)
T KOG0532|consen 218 FS--CNKISYLPVDFRKM------RHLQVLQLENNP 245 (722)
T ss_pred cc--cCceeecchhhhhh------hhheeeeeccCC
Confidence 66 46555555544444 455666555543
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.26 E-value=0.00063 Score=37.01 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=27.4
Q ss_pred CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCccc
Q 040713 49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF 94 (157)
Q Consensus 49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~l 94 (157)
++|++|+++++ +++ .+|. .++++++|+.|++++ + .+.++
T Consensus 1 ~~L~~L~l~~N-~i~-~l~~---~l~~l~~L~~L~l~~-N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QIT-DLPP---ELSNLPNLETLNLSN-N-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-S-SHGG---HGTTCTTSSEEEETS-S-CCSBE
T ss_pred CcceEEEccCC-CCc-ccCc---hHhCCCCCCEEEecC-C-CCCCC
Confidence 47888888874 776 7776 378889999999988 4 45544
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.24 E-value=9.3e-05 Score=56.44 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=5.6
Q ss_pred CCccEEEecCC
Q 040713 49 TNLHSLWIDGN 59 (157)
Q Consensus 49 ~~L~~L~i~~c 59 (157)
++|+.|++++|
T Consensus 137 ~~L~~L~L~~n 147 (319)
T cd00116 137 PALEKLVLGRN 147 (319)
T ss_pred CCceEEEcCCC
Confidence 34555555544
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=9.5e-05 Score=62.77 Aligned_cols=75 Identities=29% Similarity=0.496 Sum_probs=35.0
Q ss_pred CcceEeeecCcCC-cccCcccC-CCCcccEEEeeC-cccC--CCC--CCCCCCccEEEecCCCCchhhhhhccccCCCCC
Q 040713 5 KLTRLEIYDCKRL-EALPKGLH-NLTSLQELKIGG-ELPS--LEE--DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFS 77 (157)
Q Consensus 5 ~L~~L~l~~c~~l-~~lp~~~~-~l~~L~~L~l~~-~l~~--lp~--~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~ 77 (157)
+|++|+|++-..+ ..+|..++ .||+|++|.+.+ .+.. |.. ..| |+|..|+|+++ +++ .+. ++++++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~T-nI~-nl~----GIS~Lk 195 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGT-NIS-NLS----GISRLK 195 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCC-Ccc-CcH----HHhccc
Confidence 5666666663322 22343333 566666666666 2211 111 012 36666666664 333 331 344455
Q ss_pred ccCEEEEec
Q 040713 78 SLRHLTISG 86 (157)
Q Consensus 78 ~L~~L~i~~ 86 (157)
+|+.|.+.+
T Consensus 196 nLq~L~mrn 204 (699)
T KOG3665|consen 196 NLQVLSMRN 204 (699)
T ss_pred cHHHHhccC
Confidence 555554443
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.03 E-value=0.00035 Score=60.84 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=57.1
Q ss_pred CCcceEeeecCcC-CcccCcc-cCCCCcccEEEeeC--cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKR-LEALPKG-LHNLTSLQELKIGG--ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~-l~~lp~~-~~~l~~L~~L~l~~--~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
+.|++|-+.+... +..++.. +..++.|+.|++++ .+..+|.. +-.-+|++|++++ ..+. .+|. ++++|..
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~-~LP~---~l~~Lk~ 619 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGIS-HLPS---GLGNLKK 619 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcc-ccch---HHHHHHh
Confidence 3566666666332 4444443 56788888888885 77777765 3345788888876 4666 7777 5888888
Q ss_pred cCEEEEecCCCCCcccC
Q 040713 79 LRHLTISGCDDDMVSFP 95 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp 95 (157)
|.+|++.. ...+.++|
T Consensus 620 L~~Lnl~~-~~~l~~~~ 635 (889)
T KOG4658|consen 620 LIYLNLEV-TGRLESIP 635 (889)
T ss_pred hheecccc-cccccccc
Confidence 88888876 55554443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.96 E-value=0.00036 Score=55.16 Aligned_cols=84 Identities=25% Similarity=0.403 Sum_probs=57.2
Q ss_pred CcceEeeecCcCCcccCcccCCCC-cccEEEeeC-cccCCC-CCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLT-SLQELKIGG-ELPSLE-EDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~-~l~~lp-~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
+++.|.+.+ ..+..++.....+. +|+.|++++ .+..+| +.+.+++|+.|+++++ .+. .+|. ..+..+.|+.
T Consensus 117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~-~l~~---~~~~~~~L~~ 190 (394)
T COG4886 117 NLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLS-DLPK---LLSNLSNLNN 190 (394)
T ss_pred ceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhh-hhhh---hhhhhhhhhh
Confidence 566677766 46777777666674 888888888 777774 3355668888888774 555 5665 2336777888
Q ss_pred EEEecCCCCCcccCc
Q 040713 82 LTISGCDDDMVSFPP 96 (157)
Q Consensus 82 L~i~~~c~~l~~lp~ 96 (157)
|++++ +++..+|.
T Consensus 191 L~ls~--N~i~~l~~ 203 (394)
T COG4886 191 LDLSG--NKISDLPP 203 (394)
T ss_pred eeccC--CccccCch
Confidence 88887 55655554
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.94 E-value=6.3e-05 Score=59.20 Aligned_cols=79 Identities=23% Similarity=0.441 Sum_probs=57.8
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+.-..+++.. +.++++|++ ++.+++|+.|++++ .|+.+.+..|. .+|..|.+.+.++++ .+|.. .+.++.+|
T Consensus 67 ~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~--~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKG--AFGGLSSL 142 (498)
T ss_pred CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhh--HhhhHHHH
Confidence 4667788877 578888864 56899999999998 88877766443 467777777767887 88876 67777777
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
+.|.+.-
T Consensus 143 qrLllNa 149 (498)
T KOG4237|consen 143 QRLLLNA 149 (498)
T ss_pred HHHhcCh
Confidence 7666543
No 37
>PLN03150 hypothetical protein; Provisional
Probab=96.88 E-value=0.0022 Score=54.09 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=63.6
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCC-CCCCCccEEEecCCCCchhhhhhccccCCC-CCc
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHR-FSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~-l~~ 78 (157)
.++|+.|+++++.....+|..++.+++|+.|++++ .+.. +|.. +..++|+.|+++++ .+...+|.. +.. +.+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~---l~~~~~~ 516 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAA---LGGRLLH 516 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-cccccCChH---Hhhcccc
Confidence 36899999999754457898899999999999999 7764 4442 34469999999886 455578863 544 346
Q ss_pred cCEEEEecCCCCCccc
Q 040713 79 LRHLTISGCDDDMVSF 94 (157)
Q Consensus 79 L~~L~i~~~c~~l~~l 94 (157)
+..+++.+ ++.+...
T Consensus 517 ~~~l~~~~-N~~lc~~ 531 (623)
T PLN03150 517 RASFNFTD-NAGLCGI 531 (623)
T ss_pred CceEEecC-CccccCC
Confidence 67888887 5544433
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.81 E-value=0.00021 Score=54.85 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCC-CCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEE-DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~-~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
|.++.|+++++ .+..+.. ++.+++|+.|++++ .+..+-. ....-+.+.|.+.+ +.++ .+. +++.+-+|..
T Consensus 307 Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE-~LS----GL~KLYSLvn 378 (490)
T KOG1259|consen 307 PKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIE-TLS----GLRKLYSLVN 378 (490)
T ss_pred cceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHh-hhh----hhHhhhhhee
Confidence 57888888884 5655544 77889999999998 5554421 11224777887776 3554 554 4677778888
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++++ ++++.+ ..+..-|-.+.|+++.+.++|
T Consensus 379 LDl~~--N~Ie~l----deV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 379 LDLSS--NQIEEL----DEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccccc--cchhhH----HHhcccccccHHHHHhhcCCC
Confidence 88887 555533 222222223567777776665
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.0007 Score=57.60 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=66.4
Q ss_pred CCcceEeeecCcCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchh--hhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWK--SMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~--~lp~~~~~l~~l~~ 78 (157)
|+|++|.+.+- .+. .+-.-..++++|..|+|++ +++.+..-+.+.+|+.|.+.+. .++. .+- .+-+|++
T Consensus 148 PsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnL-e~e~~~~l~----~LF~L~~ 221 (699)
T KOG3665|consen 148 PSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNL-EFESYQDLI----DLFNLKK 221 (699)
T ss_pred cccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCC-CCCchhhHH----HHhcccC
Confidence 68999999883 221 1223345899999999999 8888855455678888877653 2220 111 3668999
Q ss_pred cCEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeC
Q 040713 79 LRHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWG 117 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~ 117 (157)
|+.|+|+. .....-+.-+ +++......++|+.|+.++
T Consensus 222 L~vLDIS~--~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 222 LRVLDISR--DKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred CCeeeccc--cccccchHHHHHHHHhcccCccccEEecCC
Confidence 99999997 3222222111 2222222246888888776
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.63 E-value=0.00077 Score=53.30 Aligned_cols=76 Identities=30% Similarity=0.456 Sum_probs=44.3
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
+|+.|++++ +.+..+|..++.+++|+.|++.+ .+..+|... ..+.|+.|++++ .++. .+|.. ......|+++
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~-~l~~~---~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKIS-DLPPE---IELLSALEEL 214 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-Cccc-cCchh---hhhhhhhhhh
Confidence 677777766 45666665666777777777777 666666553 445666666665 3444 45431 2223335555
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
.+++
T Consensus 215 ~~~~ 218 (394)
T COG4886 215 DLSN 218 (394)
T ss_pred hhcC
Confidence 5554
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.53 E-value=0.0016 Score=49.59 Aligned_cols=12 Identities=33% Similarity=0.116 Sum_probs=7.1
Q ss_pred CCccEEeeeCCh
Q 040713 108 SSLLQLWIWGCP 119 (157)
Q Consensus 108 ~~L~~L~i~~c~ 119 (157)
..|++|++.+|.
T Consensus 250 ~~L~~L~l~~n~ 261 (319)
T cd00116 250 ISLLTLSLSCND 261 (319)
T ss_pred CCceEEEccCCC
Confidence 456666666653
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00051 Score=54.75 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=47.3
Q ss_pred CCCcceEeeecCcCCcccC---cccCCCCcccEEEeeC-cccCCCCC---CCCCCccEEEecCCCCchhhhhhccccCCC
Q 040713 3 CAKLTRLEIYDCKRLEALP---KGLHNLTSLQELKIGG-ELPSLEED---GLPTNLHSLWIDGNKKIWKSMIERGRGFHR 75 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp---~~~~~l~~L~~L~l~~-~l~~lp~~---~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~ 75 (157)
+|+++.|+++.. -+..+- ...++|++|+.|+++. .+..+... ...++|+.|.++.|.--...+- | .+..
T Consensus 145 ~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~-~--~~~~ 220 (505)
T KOG3207|consen 145 LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ-W--ILLT 220 (505)
T ss_pred CCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH-H--HHHh
Confidence 457778888772 333332 3346889999999988 55544332 2446888999988843221221 1 2334
Q ss_pred CCccCEEEEec
Q 040713 76 FSSLRHLTISG 86 (157)
Q Consensus 76 l~~L~~L~i~~ 86 (157)
+++|+.|++.+
T Consensus 221 fPsl~~L~L~~ 231 (505)
T KOG3207|consen 221 FPSLEVLYLEA 231 (505)
T ss_pred CCcHHHhhhhc
Confidence 56666666655
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.00 E-value=0.00017 Score=60.87 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=65.9
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
|.|+.|+++++ ++.... .+..++.|++|+|+. .+..+|..+.- ..|+.|.+++ +.++ .+- ++.++.+|+.
T Consensus 187 ~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~-tL~----gie~LksL~~ 258 (1096)
T KOG1859|consen 187 PALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALT-TLR----GIENLKSLYG 258 (1096)
T ss_pred HHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHH-hhh----hHHhhhhhhc
Confidence 46778888873 555443 567788899999988 77777764432 4588888876 4565 554 4678888999
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++++ +.+.... .+.--+....|..|++.++|
T Consensus 259 LDlsy--Nll~~hs----eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 259 LDLSY--NLLSEHS----ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cchhH--hhhhcch----hhhHHHHHHHHHHHhhcCCc
Confidence 99987 3332211 11111223567777777766
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0019 Score=49.51 Aligned_cols=103 Identities=28% Similarity=0.404 Sum_probs=61.5
Q ss_pred CCcceEeeecCcCCcccCc--ccCCCCcccEEEeeC-ccc---------CCCCC-------C---------------CCC
Q 040713 4 AKLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGG-ELP---------SLEED-------G---------------LPT 49 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~-~l~---------~lp~~-------~---------------~~~ 49 (157)
.+|+.|+++.|.++++.-- -+.+++.|..|+|+. .+. .+.+. | --+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 3677777777777664321 234666677777765 111 01110 0 115
Q ss_pred CccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc---ccccCCCCCCCCCccEEeeeCC
Q 040713 50 NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP---ELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 50 ~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~---~l~~lp~~~l~~~L~~L~i~~c 118 (157)
+|..|++++|..++...-. .+..++.|++|.++. |-.+ +|+ .+++. ++|.+|++.+|
T Consensus 314 ~l~~LDLSD~v~l~~~~~~---~~~kf~~L~~lSlsR-CY~i--~p~~~~~l~s~------psl~yLdv~g~ 373 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQ---EFFKFNYLQHLSLSR-CYDI--IPETLLELNSK------PSLVYLDVFGC 373 (419)
T ss_pred ceeeeccccccccCchHHH---HHHhcchheeeehhh-hcCC--ChHHeeeeccC------cceEEEEeccc
Confidence 7778888887777632222 255688888888888 7654 222 23333 68999999887
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.81 E-value=0.0036 Score=50.14 Aligned_cols=76 Identities=30% Similarity=0.418 Sum_probs=42.5
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
.+|+.|++.+ +.++.+...+..+++|++|++++ .|..+......+.|+.|++.++ .+. .+. ++..+++|+.+
T Consensus 95 ~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N-~i~-~~~----~~~~l~~L~~l 167 (414)
T KOG0531|consen 95 KSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN-LIS-DIS----GLESLKSLKLL 167 (414)
T ss_pred cceeeeeccc-cchhhcccchhhhhcchheeccccccccccchhhccchhhheeccC-cch-hcc----CCccchhhhcc
Confidence 3555666655 34555544355667777777776 5555554444445666666653 443 333 24445666666
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++.+
T Consensus 168 ~l~~ 171 (414)
T KOG0531|consen 168 DLSY 171 (414)
T ss_pred cCCc
Confidence 6665
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.81 E-value=0.0048 Score=28.24 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.2
Q ss_pred CcceEeeecCcCCcccCcccCC
Q 040713 5 KLTRLEIYDCKRLEALPKGLHN 26 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~ 26 (157)
+|++|++++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5888999987 77788877654
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.62 E-value=0.0041 Score=49.32 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=36.2
Q ss_pred CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
|+|++|++++ +.++.+. .++..+..++.|++.. +++.+..+.|. +.|+.|++++ +.++ .+... .+..+.+|
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it-~~~~~--aF~~~~~l 348 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQIT-TVAPG--AFQTLFSL 348 (498)
T ss_pred ccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeE-EEecc--ccccccee
Confidence 3555555555 2444432 3444555555555555 55544443332 4555555555 2343 22221 34445555
Q ss_pred CEEEEe
Q 040713 80 RHLTIS 85 (157)
Q Consensus 80 ~~L~i~ 85 (157)
.+|.+-
T Consensus 349 ~~l~l~ 354 (498)
T KOG4237|consen 349 STLNLL 354 (498)
T ss_pred eeeehc
Confidence 555553
No 48
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.30 E-value=0.011 Score=25.36 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=9.9
Q ss_pred CCcceEeeecCcCCcccC
Q 040713 4 AKLTRLEIYDCKRLEALP 21 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp 21 (157)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 478888888874 66655
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.23 E-value=0.0081 Score=48.13 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=56.0
Q ss_pred cccCCCCcccEEEeeC-cccCCCC-CCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccc
Q 040713 22 KGLHNLTSLQELKIGG-ELPSLEE-DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK 99 (157)
Q Consensus 22 ~~~~~l~~L~~L~l~~-~l~~lp~-~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~ 99 (157)
..+..+++|+.|++.+ .+..+.. ....++|+.|++++ +.+. .+. ++..++.|+.|++++ +.+..+. .+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~-~i~----~l~~l~~L~~L~l~~--N~i~~~~-~~~ 159 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKIT-KLE----GLSTLTLLKELNLSG--NLISDIS-GLE 159 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccc-cccc-ccc----chhhccchhhheecc--Ccchhcc-CCc
Confidence 3466788999999998 7777766 44556999999987 4665 554 467788899999998 5444433 222
Q ss_pred cCCCCCCCCCccEEeeeCC
Q 040713 100 YFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 100 ~lp~~~l~~~L~~L~i~~c 118 (157)
. +.+|+.+++.++
T Consensus 160 ~------l~~L~~l~l~~n 172 (414)
T KOG0531|consen 160 S------LKSLKLLDLSYN 172 (414)
T ss_pred c------chhhhcccCCcc
Confidence 2 256666666554
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.014 Score=46.87 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCcceEeeecCcCCcc--cCcccCCCCcccEEEeeC
Q 040713 4 AKLTRLEIYDCKRLEA--LPKGLHNLTSLQELKIGG 37 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~ 37 (157)
++|++|.+++|. +.. +-..+..+|+|+.|++..
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~ 231 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEA 231 (505)
T ss_pred hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhc
Confidence 478888888884 321 111123455666665554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.99 E-value=0.0039 Score=42.76 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=57.5
Q ss_pred cceEeeecCcCCcccCccc---CCCCcccEEEeeC-cccCCCCC--CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 6 LTRLEIYDCKRLEALPKGL---HNLTSLQELKIGG-ELPSLEED--GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 6 L~~L~l~~c~~l~~lp~~~---~~l~~L~~L~l~~-~l~~lp~~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+..+++++|. +..+++.. .....|...+|++ .++.||+. ..++..+.|.+.+ +.+. .+|++ +..++.|
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neis-dvPeE---~Aam~aL 102 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEIS-DVPEE---LAAMPAL 102 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhh-hchHH---HhhhHHh
Confidence 4457777874 33344433 3455677778888 88888875 2345888898877 5776 78884 8889999
Q ss_pred CEEEEecCCCCCcccCc
Q 040713 80 RHLTISGCDDDMVSFPP 96 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~ 96 (157)
+.++++. +.+...|.
T Consensus 103 r~lNl~~--N~l~~~p~ 117 (177)
T KOG4579|consen 103 RSLNLRF--NPLNAEPR 117 (177)
T ss_pred hhccccc--CccccchH
Confidence 9999997 44555444
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.82 E-value=0.25 Score=36.03 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=44.7
Q ss_pred ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC--CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED--GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
..+++++. .+..++ .+..++.|.+|.+.+ .|..+.+. .+.++|+.|.+.+ +.+. .+-+- ..+..++.|++|.
T Consensus 45 d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~-~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 45 DAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQ-ELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchh-hhhhc-chhccCCccceee
Confidence 34455552 333332 345677788888888 77776553 2446788888876 3454 33221 0245677888888
Q ss_pred Eec
Q 040713 84 ISG 86 (157)
Q Consensus 84 i~~ 86 (157)
+-+
T Consensus 120 ll~ 122 (233)
T KOG1644|consen 120 LLG 122 (233)
T ss_pred ecC
Confidence 877
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.81 E-value=0.017 Score=43.18 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.2
Q ss_pred CCCcccEEEeeC
Q 040713 26 NLTSLQELKIGG 37 (157)
Q Consensus 26 ~l~~L~~L~l~~ 37 (157)
.+++|+.|.++.
T Consensus 63 ~Lp~LkkL~lsd 74 (260)
T KOG2739|consen 63 KLPKLKKLELSD 74 (260)
T ss_pred CcchhhhhcccC
Confidence 455666666655
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.74 E-value=0.036 Score=41.52 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCC-CchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCC
Q 040713 25 HNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNK-KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFP 102 (157)
Q Consensus 25 ~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~-~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp 102 (157)
..+..|+.|.+.+ .+.++...-..++|+.|.++.++ .....++. .....++|+++++++ ++++. +++++
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v---l~e~~P~l~~l~ls~--Nki~~----lstl~ 110 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV---LAEKAPNLKVLNLSG--NKIKD----LSTLR 110 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee---hhhhCCceeEEeecC--Ccccc----ccccc
Confidence 3566777777777 55544332244699999997641 12112322 133459999999998 55542 22332
Q ss_pred CCCCCCCccEEeeeCChh
Q 040713 103 EKGLPSSLLQLWIWGCPL 120 (157)
Q Consensus 103 ~~~l~~~L~~L~i~~c~~ 120 (157)
.-.-..+|..|.+.+|+-
T Consensus 111 pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSV 128 (260)
T ss_pred hhhhhcchhhhhcccCCc
Confidence 221226788888888863
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.46 E-value=0.34 Score=31.69 Aligned_cols=76 Identities=17% Similarity=0.375 Sum_probs=41.3
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
.+|+.+.+.. .++.++. .+.+.++|+.+.+.+.+..++...+. ++++.+.+.+ .+. .++.. .+...++|+
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~-~i~~~--~F~~~~~l~ 84 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN--NLK-SIGDN--AFSNCTNLK 84 (129)
T ss_dssp TT--EEEETS--T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS--TT--EE-TT--TTTT-TTEC
T ss_pred CCCCEEEECC--CeeEeChhhcccccccccccccccccccceeeeecccccccccccc--ccc-ccccc--ccccccccc
Confidence 3677777764 4555654 34577788888887666666655443 3688888854 444 45544 456677888
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
.+.+..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 888754
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.17 E-value=0.0036 Score=53.26 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=56.3
Q ss_pred cCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcc
Q 040713 15 KRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVS 93 (157)
Q Consensus 15 ~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~ 93 (157)
+.++.+...++-++.|+.|++++ ++..+....-.+.|++|+|++ +.+. .+|.- +..+. .|+.|.+++ +.+++
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy-N~L~-~vp~l--~~~gc-~L~~L~lrn--N~l~t 246 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY-NCLR-HVPQL--SMVGC-KLQLLNLRN--NALTT 246 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhccccccccccc-chhc-ccccc--chhhh-hheeeeecc--cHHHh
Confidence 45666666777788888999988 555554323346889999977 4565 56642 22233 388888887 54443
Q ss_pred cCcccccCCCCCCCCCccEEeeeCC
Q 040713 94 FPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 94 lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
+- .++.+ .+|+.|+++.+
T Consensus 247 L~-gie~L------ksL~~LDlsyN 264 (1096)
T KOG1859|consen 247 LR-GIENL------KSLYGLDLSYN 264 (1096)
T ss_pred hh-hHHhh------hhhhccchhHh
Confidence 32 33333 67777877653
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=0.019 Score=41.65 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCccEEEecCCCCchhhhhhccc-cCC-CCCccCEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCChhH
Q 040713 49 TNLHSLWIDGNKKIWKSMIERGR-GFH-RFSSLRHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCPLI 121 (157)
Q Consensus 49 ~~L~~L~i~~c~~l~~~lp~~~~-~l~-~l~~L~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~~l 121 (157)
++++.|.+.+|..+. +||- .++ -.++|+.|+|++ |+.+++--- .|..+ ++|+.|.+++.+..
T Consensus 125 ~~i~~l~l~~ck~~d----D~~L~~l~~~~~~L~~L~lsg-C~rIT~~GL~~L~~l------knLr~L~l~~l~~v 189 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFD----DWCLERLGGLAPSLQDLDLSG-CPRITDGGLACLLKL------KNLRRLHLYDLPYV 189 (221)
T ss_pred chhhhheeccccchh----hHHHHHhcccccchheeeccC-CCeechhHHHHHHHh------hhhHHHHhcCchhh
Confidence 578888888886654 2210 122 357899999999 887765310 22333 68888888887643
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.36 E-value=0.04 Score=44.21 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=17.8
Q ss_pred CCcceEeeecCcCCcc--cCcccCCCCcccEEEee
Q 040713 4 AKLTRLEIYDCKRLEA--LPKGLHNLTSLQELKIG 36 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~ 36 (157)
++|+.|.+.+|..+.. +-......+.|+.|+++
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 222 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS 222 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheeccc
Confidence 4566666666655543 22333455666666654
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=0.18 Score=36.68 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=43.7
Q ss_pred CccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHH
Q 040713 50 NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAE 123 (157)
Q Consensus 50 ~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~ 123 (157)
.++.++-+++.-.. ++.+.+..+++++.|.+.+ |..+... .|+.+.. +.++|+.|+|++|+.+++
T Consensus 102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~-ck~~dD~--~L~~l~~--~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLAN-CKYFDDW--CLERLGG--LAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHH----HHHHHHhccchhhhheecc-ccchhhH--HHHHhcc--cccchheeeccCCCeech
Confidence 45566666652221 2111467788899999999 8876553 4555543 558999999999997763
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=0.015 Score=44.38 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=50.1
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
+.++|+..+| .+..+. ....|+.|+.|.++- .|+++..-.--++|+.|++..+ .+. .+.+. .-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~-sldEL-~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIE-SLDEL-EYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccc-cHHHH-HHHhcCchhhhHh
Confidence 4567788887 444332 235788899999987 7776654222256777766542 232 33221 0267788888888
Q ss_pred EecCCCCCcc
Q 040713 84 ISGCDDDMVS 93 (157)
Q Consensus 84 i~~~c~~l~~ 93 (157)
+.. .|....
T Consensus 95 L~E-NPCc~~ 103 (388)
T KOG2123|consen 95 LDE-NPCCGE 103 (388)
T ss_pred hcc-CCcccc
Confidence 876 555443
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=0.069 Score=41.27 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=43.0
Q ss_pred CcceEeeecCcCCcccCc---ccCCCCcccEEEeeC-----cccCCCCCCCCCCccEEEecCCCCch-hhhhhccccCCC
Q 040713 5 KLTRLEIYDCKRLEALPK---GLHNLTSLQELKIGG-----ELPSLEEDGLPTNLHSLWIDGNKKIW-KSMIERGRGFHR 75 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~-----~l~~lp~~~~~~~L~~L~i~~c~~l~-~~lp~~~~~l~~ 75 (157)
.++.|++.+ +.+..+.+ .+.++|.|+.|+|+. .|.++|. -..+|+.|.+.+. .+. ..... .+..
T Consensus 72 ~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~--p~~nl~~lVLNgT-~L~w~~~~s---~l~~ 144 (418)
T KOG2982|consen 72 DVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL--PLKNLRVLVLNGT-GLSWTQSTS---SLDD 144 (418)
T ss_pred hhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc--cccceEEEEEcCC-CCChhhhhh---hhhc
Confidence 455566666 24443332 346899999999998 3444541 2268888888663 331 01111 2445
Q ss_pred CCccCEEEEec
Q 040713 76 FSSLRHLTISG 86 (157)
Q Consensus 76 l~~L~~L~i~~ 86 (157)
++.+++|+++.
T Consensus 145 lP~vtelHmS~ 155 (418)
T KOG2982|consen 145 LPKVTELHMSD 155 (418)
T ss_pred chhhhhhhhcc
Confidence 66667776665
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.69 E-value=0.16 Score=40.80 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCcceEeeecCcCCcccC--cccCCCCcccEEEeeC-c-ccC--CCC-CCCCCCccEEEecCCCCchhh-hhhccccCCC
Q 040713 4 AKLTRLEIYDCKRLEALP--KGLHNLTSLQELKIGG-E-LPS--LEE-DGLPTNLHSLWIDGNKKIWKS-MIERGRGFHR 75 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~-~-l~~--lp~-~~~~~~L~~L~i~~c~~l~~~-lp~~~~~l~~ 75 (157)
++|+.|.+++|..+...- .--.+.+.|+.+++.. . +.. +.. ...-+.|+.|.++.|..++.. +-.....-.+
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 456666666665443221 0012455555555554 1 110 100 011146777777777555411 0000001234
Q ss_pred CCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713 76 FSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIA 122 (157)
Q Consensus 76 l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~ 122 (157)
+..|..+.+.+ |+.+..- .++.+. ..++|+.+++.+|....
T Consensus 400 ~~~l~~lEL~n-~p~i~d~--~Le~l~---~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 400 LEGLEVLELDN-CPLITDA--TLEHLS---ICRNLERIELIDCQDVT 440 (483)
T ss_pred ccccceeeecC-CCCchHH--HHHHHh---hCcccceeeeechhhhh
Confidence 56677788888 7765431 222221 12578888888887654
No 63
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.87 E-value=0.3 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.814 Sum_probs=13.4
Q ss_pred CCCcceEeeecCcCCc
Q 040713 3 CAKLTRLEIYDCKRLE 18 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~ 18 (157)
+++|++|++++|.+++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4789999999998765
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=0.2 Score=38.82 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCcceEeeecCcCCcccC--ccc-CCCCcccEEEeeC--cccC--CCCCCCCCCccEEEecCCCCchhhhhhccccCCCC
Q 040713 4 AKLTRLEIYDCKRLEALP--KGL-HNLTSLQELKIGG--ELPS--LEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRF 76 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp--~~~-~~l~~L~~L~l~~--~l~~--lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l 76 (157)
++|+.|++++|..--... ..+ ...++|..|++++ .++. +..-...+.|++|.++.|..+....-- .+...
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---~l~s~ 362 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL---ELNSK 362 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee---eeccC
Confidence 578999999985321111 112 4789999999998 4442 111122358999999999887421111 36788
Q ss_pred CccCEEEEecCCC
Q 040713 77 SSLRHLTISGCDD 89 (157)
Q Consensus 77 ~~L~~L~i~~~c~ 89 (157)
++|.+|++.++++
T Consensus 363 psl~yLdv~g~vs 375 (419)
T KOG2120|consen 363 PSLVYLDVFGCVS 375 (419)
T ss_pred cceEEEEeccccC
Confidence 9999999999443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.44 E-value=1.2 Score=32.64 Aligned_cols=59 Identities=15% Similarity=0.336 Sum_probs=38.0
Q ss_pred CCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCC-CCCccCEEEEecCCCCCc
Q 040713 27 LTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFH-RFSSLRHLTISGCDDDMV 92 (157)
Q Consensus 27 l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~-~l~~L~~L~i~~~c~~l~ 92 (157)
+.+...+++++ .+..++.-..++.|.+|.+.+ +.+. .+.+ .+. -+++|+.|.+.+ +.+.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~n-NrIt-~I~p---~L~~~~p~l~~L~Ltn--Nsi~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNN-NRIT-RIDP---DLDTFLPNLKTLILTN--NSIQ 101 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecC-Ccce-eecc---chhhhccccceEEecC--cchh
Confidence 34566778887 555544323346899999976 5666 5544 243 467899999987 4444
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.37 E-value=0.088 Score=36.27 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
..|+..++++ +.++ .+|+. ....++.++.|++.. +.+..+|+++..+ +.|+.+.++.++
T Consensus 53 ~el~~i~ls~-N~fk-~fp~k--ft~kf~t~t~lNl~~--neisdvPeE~Aam------~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSD-NGFK-KFPKK--FTIKFPTATTLNLAN--NEISDVPEELAAM------PALRSLNLRFNP 111 (177)
T ss_pred ceEEEEeccc-chhh-hCCHH--Hhhccchhhhhhcch--hhhhhchHHHhhh------HHhhhcccccCc
Confidence 4677888887 5777 77764 334566788888887 7677777666666 688888888876
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.28 E-value=0.24 Score=38.87 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=21.4
Q ss_pred CCCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-ccc
Q 040713 3 CAKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELP 40 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~ 40 (157)
+|.|++|+++++ -+. .+-.-+.+...|+.|++.| .+.
T Consensus 91 ~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 91 CPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 357788888774 222 1112234677777777777 443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=0.026 Score=43.10 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=50.1
Q ss_pred CCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc--ccccCCC
Q 040713 27 LTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP--ELKYFPE 103 (157)
Q Consensus 27 l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~--~l~~lp~ 103 (157)
+.+.+.|+.++ .|..+.--.-.+.|+.|.++- ++++ ++. .+...+.|++|++.. +.+.+|-+ .|+.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSv-NkIs-sL~----pl~rCtrLkElYLRk--N~I~sldEL~YLknl-- 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSV-NKIS-SLA----PLQRCTRLKELYLRK--NCIESLDELEYLKNL-- 87 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeec-cccc-cch----hHHHHHHHHHHHHHh--cccccHHHHHHHhcC--
Confidence 55667778887 555443212224788888865 5665 554 256778899999987 54555432 33444
Q ss_pred CCCCCCccEEeeeCCh
Q 040713 104 KGLPSSLLQLWIWGCP 119 (157)
Q Consensus 104 ~~l~~~L~~L~i~~c~ 119 (157)
++|+.|++..+|
T Consensus 88 ----psLr~LWL~ENP 99 (388)
T KOG2123|consen 88 ----PSLRTLWLDENP 99 (388)
T ss_pred ----chhhhHhhccCC
Confidence 688888887754
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.09 E-value=6.8 Score=25.29 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=42.4
Q ss_pred cCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccC
Q 040713 24 LHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYF 101 (157)
Q Consensus 24 ~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~l 101 (157)
+.+.++|+.+.+.+.+..++...+. ++|+.+.+.+ .+. .++.. .+.+.++|+.+.+.+ .+..+
T Consensus 8 F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~--~~~-~i~~~--~F~~~~~l~~i~~~~----------~~~~i 72 (129)
T PF13306_consen 8 FYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPN--NLT-SIGDN--AFSNCKSLESITFPN----------NLKSI 72 (129)
T ss_dssp TTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESS--TTS-CE-TT--TTTT-TT-EEEEETS----------TT-EE
T ss_pred HhCCCCCCEEEECCCeeEeChhhcccccccccccccc--ccc-cccee--eeecccccccccccc----------ccccc
Confidence 4567788988887755666665554 4799999865 365 66665 677777899998864 22223
Q ss_pred CCCCC--CCCccEEeee
Q 040713 102 PEKGL--PSSLLQLWIW 116 (157)
Q Consensus 102 p~~~l--~~~L~~L~i~ 116 (157)
+...+ ..+|+.+.+.
T Consensus 73 ~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TTTTTT-TTECEEEET
T ss_pred ccccccccccccccccC
Confidence 32211 2577777774
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.94 E-value=1.2 Score=21.20 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=12.9
Q ss_pred CCcceEeeecCcCCcccCc
Q 040713 4 AKLTRLEIYDCKRLEALPK 22 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~ 22 (157)
++|+.|.+++ +.++++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 5778888877 46777775
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.75 E-value=1.8 Score=33.33 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCcceEeeecCcCCcccCc----ccCCCCcccEEEeeC-cccCC
Q 040713 3 CAKLTRLEIYDCKRLEALPK----GLHNLTSLQELKIGG-ELPSL 42 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~-~l~~l 42 (157)
||.|+..+++++.--...|+ .+.+-+.|++|++.+ .+..+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 56777777777432222333 335677788888877 55544
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=77.62 E-value=1 Score=36.02 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=45.1
Q ss_pred CCCcceEeeecC-cCCcccC----cccCCCCcccEEEeeC-c-ccCCCCC---CCCCCccEEEecCCCCchh-hhhhccc
Q 040713 3 CAKLTRLEIYDC-KRLEALP----KGLHNLTSLQELKIGG-E-LPSLEED---GLPTNLHSLWIDGNKKIWK-SMIERGR 71 (157)
Q Consensus 3 ~~~L~~L~l~~c-~~l~~lp----~~~~~l~~L~~L~l~~-~-l~~lp~~---~~~~~L~~L~i~~c~~l~~-~lp~~~~ 71 (157)
+++|+.|++++| ......+ .....+.+|+.|+++. . +....-. ..-++|+.|.+.+|..++. .+-.
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~--- 289 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS--- 289 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH---
Confidence 467888888773 2222222 1123456777777776 3 2211100 0124778877777765431 1222
Q ss_pred cCCCCCccCEEEEecCCCCC
Q 040713 72 GFHRFSSLRHLTISGCDDDM 91 (157)
Q Consensus 72 ~l~~l~~L~~L~i~~~c~~l 91 (157)
.....++|++|++++ |..+
T Consensus 290 i~~~~~~L~~L~l~~-c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSG-CHGL 308 (482)
T ss_pred HHHhcCcccEEeeec-Cccc
Confidence 134566788888877 6654
No 73
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=77.31 E-value=5.3 Score=21.22 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=4.2
Q ss_pred CCCccEEEe
Q 040713 48 PTNLHSLWI 56 (157)
Q Consensus 48 ~~~L~~L~i 56 (157)
|++++.|.+
T Consensus 11 P~~l~~L~~ 19 (44)
T PF05725_consen 11 PSSLKSLIF 19 (44)
T ss_pred CCCCeEEEE
Confidence 344444444
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=68.54 E-value=2.1 Score=34.69 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCccCEEEEecCCCCCcccCcccccCCCC-CCCCCccEEeeeCChhHHH
Q 040713 76 FSSLRHLTISGCDDDMVSFPPELKYFPEK-GLPSSLLQLWIWGCPLIAE 123 (157)
Q Consensus 76 l~~L~~L~i~~~c~~l~~lp~~l~~lp~~-~l~~~L~~L~i~~c~~l~~ 123 (157)
.+.|+.+.++. |..+..- .+..+... .-...|+.+.+.+||.+.+
T Consensus 371 C~~lr~lslsh-ce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 371 CPRLRVLSLSH-CELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred CchhccCChhh-hhhhhhh--hhhhhhhccccccccceeeecCCCCchH
Confidence 45566666665 5443321 22333221 1125678888888886654
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=65.61 E-value=4.1 Score=18.39 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=7.1
Q ss_pred CCcceEeeecCc
Q 040713 4 AKLTRLEIYDCK 15 (157)
Q Consensus 4 ~~L~~L~l~~c~ 15 (157)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 577888887763
No 76
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.74 E-value=5.1 Score=31.35 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCCcceEeeecCcCCcccCccc-CCCCcccEEEeeC-cccCCCCCC---CCCCccEEEecC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDG---LPTNLHSLWIDG 58 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~-~l~~lp~~~---~~~~L~~L~i~~ 58 (157)
.|.|+.|+++. +.+.+.-..+ ....+|++|-+.+ .+..-.... -.|.++.|.++.
T Consensus 96 lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 96 LPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred CccceEeeccC-CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 46899999976 4454322222 3567899999988 443221111 123556665554
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=42.84 E-value=21 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=6.5
Q ss_pred CccCEEEEec
Q 040713 77 SSLRHLTISG 86 (157)
Q Consensus 77 ~~L~~L~i~~ 86 (157)
++|++|+++.
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 4566777766
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=29.50 E-value=37 Score=15.95 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=7.7
Q ss_pred CCcceEeeecC
Q 040713 4 AKLTRLEIYDC 14 (157)
Q Consensus 4 ~~L~~L~l~~c 14 (157)
++|++|+++++
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 46777777774
Done!