Query 040713
Match_columns 157
No_of_seqs 221 out of 1675
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.4 4.7E-12 1.6E-16 96.6 10.1 107 4-122 183-291 (328)
2 4fcg_A Uncharacterized protein 99.3 1.2E-11 4E-16 94.4 9.0 130 4-146 127-286 (328)
3 3e6j_A Variable lymphocyte rec 99.2 1.2E-10 4.2E-15 84.4 11.6 102 4-118 40-145 (229)
4 2wfh_A SLIT homolog 2 protein 99.1 4.6E-10 1.6E-14 79.4 9.8 103 4-119 31-137 (193)
5 3m19_A Variable lymphocyte rec 99.1 9.1E-10 3.1E-14 80.6 11.5 78 4-86 35-116 (251)
6 4ezg_A Putative uncharacterize 99.1 5.2E-10 1.8E-14 79.1 9.4 122 5-147 67-191 (197)
7 2ell_A Acidic leucine-rich nuc 99.1 3.5E-10 1.2E-14 77.8 7.6 103 4-119 24-131 (168)
8 4g8a_A TOLL-like receptor 4; l 99.1 5.5E-10 1.9E-14 90.6 10.0 103 4-119 52-159 (635)
9 2xwt_C Thyrotropin receptor; s 99.1 4.2E-10 1.4E-14 81.7 8.0 102 4-118 31-140 (239)
10 2o6s_A Variable lymphocyte rec 99.1 2.4E-09 8.2E-14 76.1 11.8 125 4-146 28-157 (208)
11 4ezg_A Putative uncharacterize 99.1 2.4E-09 8.3E-14 75.6 11.5 125 4-147 44-169 (197)
12 2o6q_A Variable lymphocyte rec 99.1 2.7E-09 9.3E-14 78.8 12.1 54 4-58 37-94 (270)
13 2xwt_C Thyrotropin receptor; s 99.1 6.4E-10 2.2E-14 80.7 8.5 106 5-121 81-192 (239)
14 2v9t_B SLIT homolog 2 protein 99.0 1.5E-09 5.2E-14 78.1 10.2 77 5-86 33-113 (220)
15 1p9a_G Platelet glycoprotein I 99.0 2.1E-09 7.1E-14 80.6 11.2 85 4-95 77-164 (290)
16 2v9t_B SLIT homolog 2 protein 99.0 2.3E-09 7.8E-14 77.2 10.9 104 3-119 55-163 (220)
17 1ozn_A Reticulon 4 receptor; N 99.0 2.5E-09 8.6E-14 79.4 10.7 78 4-86 56-138 (285)
18 3m19_A Variable lymphocyte rec 99.0 4.7E-09 1.6E-13 76.7 11.5 127 3-147 58-189 (251)
19 3zyj_A Leucine-rich repeat-con 99.0 3.1E-09 1.1E-13 83.7 11.2 77 5-86 89-169 (440)
20 3zyi_A Leucine-rich repeat-con 99.0 2.5E-09 8.7E-14 84.5 10.6 66 24-94 119-187 (452)
21 2v70_A SLIT-2, SLIT homolog 2 99.0 2.5E-09 8.7E-14 77.0 9.3 77 5-86 33-114 (220)
22 2o6r_A Variable lymphocyte rec 99.0 4.2E-09 1.4E-13 73.0 10.1 103 4-119 28-135 (177)
23 3rfs_A Internalin B, repeat mo 99.0 5.4E-09 1.8E-13 77.4 11.3 77 4-86 63-142 (272)
24 2o6q_A Variable lymphocyte rec 99.0 6.5E-09 2.2E-13 76.8 11.6 78 4-86 61-142 (270)
25 2v70_A SLIT-2, SLIT homolog 2 99.0 4.4E-09 1.5E-13 75.7 10.0 103 4-119 57-164 (220)
26 1xeu_A Internalin C; cellular 99.0 6.6E-09 2.2E-13 76.8 11.0 98 4-119 63-161 (263)
27 2o6s_A Variable lymphocyte rec 99.0 6.3E-09 2.1E-13 73.9 10.3 104 3-119 51-159 (208)
28 1p9a_G Platelet glycoprotein I 99.0 5.1E-09 1.7E-13 78.5 10.3 104 3-119 99-206 (290)
29 1ozn_A Reticulon 4 receptor; N 99.0 7.8E-09 2.7E-13 76.7 11.0 85 4-94 32-120 (285)
30 3e6j_A Variable lymphocyte rec 98.9 4.9E-09 1.7E-13 75.9 9.5 103 3-119 63-170 (229)
31 2je0_A Acidic leucine-rich nuc 98.9 1.8E-09 6.3E-14 72.8 6.6 103 4-119 17-124 (149)
32 1w8a_A SLIT protein; signaling 98.9 5.7E-09 2E-13 73.5 9.4 103 4-119 29-137 (192)
33 2z80_A TOLL-like receptor 2, v 98.9 2.4E-09 8.1E-14 81.9 8.0 103 4-119 52-160 (353)
34 3zyj_A Leucine-rich repeat-con 98.9 9.8E-09 3.4E-13 80.8 11.4 79 4-86 160-240 (440)
35 3v47_A TOLL-like receptor 5B a 98.9 7.6E-09 2.6E-13 81.3 10.6 104 4-119 275-382 (455)
36 2r9u_A Variable lymphocyte rec 98.9 8.4E-09 2.9E-13 71.8 9.5 98 7-119 15-116 (174)
37 3zyi_A Leucine-rich repeat-con 98.9 1.1E-08 3.8E-13 80.8 11.2 78 5-86 172-251 (452)
38 1a9n_A U2A', U2A'; complex (nu 98.9 3.2E-09 1.1E-13 73.7 6.9 104 3-119 18-124 (176)
39 3rfs_A Internalin B, repeat mo 98.9 1.1E-08 3.7E-13 75.7 10.3 79 3-86 84-166 (272)
40 1h6u_A Internalin H; cell adhe 98.9 1.1E-08 3.6E-13 77.2 10.1 75 4-86 63-138 (308)
41 3g39_A Variable lymphocyte rec 98.9 1.3E-08 4.5E-13 70.4 9.4 99 6-119 11-113 (170)
42 2z62_A TOLL-like receptor 4, v 98.9 1.3E-08 4.4E-13 75.2 9.4 78 4-86 28-109 (276)
43 4b8c_D Glucose-repressible alc 98.9 2.1E-09 7.1E-14 90.1 5.6 103 3-119 223-327 (727)
44 3o6n_A APL1; leucine-rich repe 98.9 3.1E-08 1E-12 76.6 11.6 78 4-86 69-150 (390)
45 4fmz_A Internalin; leucine ric 98.9 6.5E-09 2.2E-13 79.0 7.6 75 4-86 199-274 (347)
46 4fmz_A Internalin; leucine ric 98.9 1.4E-08 4.9E-13 77.1 9.5 75 4-86 44-119 (347)
47 3o6n_A APL1; leucine-rich repe 98.8 5.9E-09 2E-13 80.7 7.4 103 4-119 45-152 (390)
48 2z66_A Variable lymphocyte rec 98.8 7.7E-09 2.6E-13 77.4 7.7 78 4-86 78-159 (306)
49 2ell_A Acidic leucine-rich nuc 98.8 4.6E-09 1.6E-13 72.2 6.0 102 4-119 49-158 (168)
50 4ecn_A Leucine-rich repeat pro 98.8 2E-08 6.7E-13 85.7 10.5 102 4-119 673-787 (876)
51 2z80_A TOLL-like receptor 2, v 98.8 9.5E-09 3.2E-13 78.6 7.8 78 4-86 76-158 (353)
52 2z62_A TOLL-like receptor 4, v 98.8 2.7E-08 9.3E-13 73.4 10.0 104 3-119 51-160 (276)
53 1dce_A Protein (RAB geranylger 98.8 5.8E-09 2E-13 85.1 6.8 100 4-119 441-544 (567)
54 2z66_A Variable lymphocyte rec 98.8 1.4E-08 4.8E-13 76.0 8.5 79 4-86 126-208 (306)
55 2xot_A Amphoterin-induced prot 98.8 1.9E-08 6.5E-13 77.4 9.4 77 5-86 40-121 (361)
56 1h6t_A Internalin B; cell adhe 98.8 2.1E-08 7E-13 75.1 9.3 75 4-86 68-143 (291)
57 1h6t_A Internalin B; cell adhe 98.8 2.1E-08 7.1E-13 75.1 9.3 99 3-118 89-188 (291)
58 3o53_A Protein LRIM1, AGAP0063 98.8 5.9E-09 2E-13 78.8 6.3 80 27-119 168-248 (317)
59 3oja_B Anopheles plasmodium-re 98.8 3.8E-08 1.3E-12 80.4 11.4 103 4-119 75-182 (597)
60 2id5_A Lingo-1, leucine rich r 98.8 2.9E-08 1E-12 78.6 10.5 77 5-86 33-113 (477)
61 3t6q_A CD180 antigen; protein- 98.8 2E-08 6.8E-13 81.7 9.4 79 4-86 278-359 (606)
62 2id5_A Lingo-1, leucine rich r 98.8 3.2E-08 1.1E-12 78.4 10.3 79 3-86 55-137 (477)
63 2z81_A CD282 antigen, TOLL-lik 98.8 1.5E-08 5.2E-13 81.4 8.4 103 4-119 26-134 (549)
64 3rgz_A Protein brassinosteroid 98.8 1.2E-08 4.3E-13 85.6 8.1 38 3-40 393-431 (768)
65 3vq2_A TLR4, TOLL-like recepto 98.8 1.4E-08 4.7E-13 82.6 8.1 40 73-119 517-556 (606)
66 3vq2_A TLR4, TOLL-like recepto 98.8 3.2E-08 1.1E-12 80.5 10.2 77 4-86 32-113 (606)
67 4eco_A Uncharacterized protein 98.8 1.9E-08 6.4E-13 82.9 8.9 102 4-119 433-547 (636)
68 2z81_A CD282 antigen, TOLL-lik 98.8 4.6E-08 1.6E-12 78.6 10.9 96 4-118 387-483 (549)
69 4g8a_A TOLL-like receptor 4; l 98.8 1.8E-08 6.1E-13 81.8 8.5 105 4-119 469-578 (635)
70 1m9s_A Internalin B; cell inva 98.8 3.6E-08 1.2E-12 81.0 10.2 75 4-86 65-140 (605)
71 3rgz_A Protein brassinosteroid 98.8 1.3E-08 4.6E-13 85.4 7.8 128 4-147 418-548 (768)
72 1a9n_A U2A', U2A'; complex (nu 98.8 5.7E-09 1.9E-13 72.4 4.6 104 4-120 42-152 (176)
73 3v47_A TOLL-like receptor 5B a 98.8 2.2E-08 7.6E-13 78.6 8.5 103 3-119 298-406 (455)
74 2xot_A Amphoterin-induced prot 98.8 4.8E-08 1.6E-12 75.1 10.1 108 3-119 63-174 (361)
75 4ay9_X Follicle-stimulating ho 98.8 2.7E-08 9.3E-13 76.2 8.2 86 4-95 30-120 (350)
76 2ft3_A Biglycan; proteoglycan, 98.7 8E-08 2.7E-12 72.8 10.6 77 4-86 78-156 (332)
77 1xku_A Decorin; proteoglycan, 98.7 9.5E-08 3.3E-12 72.3 10.7 77 4-86 145-225 (330)
78 2je0_A Acidic leucine-rich nuc 98.7 9.2E-09 3.2E-13 69.3 4.5 99 3-116 41-148 (149)
79 1ogq_A PGIP-2, polygalacturona 98.7 1.3E-08 4.3E-13 76.9 5.6 92 4-100 76-171 (313)
80 2z7x_B TOLL-like receptor 1, v 98.7 3.6E-08 1.2E-12 78.9 8.5 100 4-118 348-454 (520)
81 2z63_A TOLL-like receptor 4, v 98.7 5.2E-08 1.8E-12 78.5 9.5 54 5-59 29-86 (570)
82 2z7x_B TOLL-like receptor 1, v 98.7 8.4E-08 2.9E-12 76.7 10.6 104 4-119 324-432 (520)
83 3oja_A Leucine-rich immune mol 98.7 1.6E-08 5.5E-13 80.9 6.3 37 4-41 120-158 (487)
84 1w8a_A SLIT protein; signaling 98.7 9.3E-08 3.2E-12 67.3 9.6 121 7-147 11-136 (192)
85 3t6q_A CD180 antigen; protein- 98.7 8.5E-08 2.9E-12 78.0 10.3 78 4-86 33-114 (606)
86 1h6u_A Internalin H; cell adhe 98.7 6E-08 2E-12 73.1 8.5 53 4-58 85-138 (308)
87 4eco_A Uncharacterized protein 98.7 3.5E-08 1.2E-12 81.3 7.7 105 3-119 205-341 (636)
88 1xku_A Decorin; proteoglycan, 98.7 9.3E-08 3.2E-12 72.3 9.5 77 4-86 76-154 (330)
89 2o6r_A Variable lymphocyte rec 98.7 2.6E-07 8.9E-12 63.8 11.1 122 6-147 9-134 (177)
90 2z63_A TOLL-like receptor 4, v 98.7 6.7E-08 2.3E-12 77.8 9.2 33 4-37 373-405 (570)
91 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 1.4E-07 4.6E-12 76.4 10.9 100 4-119 52-157 (562)
92 1ogq_A PGIP-2, polygalacturona 98.7 3E-08 1E-12 74.9 6.6 90 4-98 101-194 (313)
93 3o53_A Protein LRIM1, AGAP0063 98.7 3.3E-08 1.1E-12 74.7 6.8 122 5-147 121-247 (317)
94 1m9s_A Internalin B; cell inva 98.7 7.1E-08 2.4E-12 79.3 9.2 122 4-149 87-209 (605)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 7E-08 2.4E-12 78.1 9.1 55 4-59 377-438 (562)
96 2r9u_A Variable lymphocyte rec 98.7 7.8E-08 2.7E-12 66.8 7.9 78 4-86 33-114 (174)
97 2wfh_A SLIT homolog 2 protein 98.7 2.4E-07 8.2E-12 65.3 10.2 120 7-146 13-135 (193)
98 2ft3_A Biglycan; proteoglycan, 98.7 7.2E-08 2.4E-12 73.1 7.8 107 5-119 194-305 (332)
99 1dce_A Protein (RAB geranylger 98.6 5.4E-08 1.9E-12 79.4 7.4 101 4-114 463-566 (567)
100 3oja_B Anopheles plasmodium-re 98.6 4.7E-08 1.6E-12 79.9 7.0 125 4-146 51-180 (597)
101 1xeu_A Internalin C; cellular 98.6 1.2E-07 4.1E-12 70.0 8.6 98 4-119 41-139 (263)
102 4ecn_A Leucine-rich repeat pro 98.6 1E-07 3.6E-12 81.3 9.3 86 4-97 548-637 (876)
103 1wwl_A Monocyte differentiatio 98.6 1.2E-07 4.3E-12 71.3 8.6 82 3-89 94-184 (312)
104 3j0a_A TOLL-like receptor 5; m 98.6 2.1E-07 7.2E-12 78.9 10.9 78 4-86 24-106 (844)
105 1ziw_A TOLL-like receptor 3; i 98.6 1.2E-07 4.1E-12 78.1 9.1 78 4-86 25-106 (680)
106 1ziw_A TOLL-like receptor 3; i 98.6 1.1E-07 3.7E-12 78.4 8.5 78 4-86 49-130 (680)
107 1jl5_A Outer protein YOPM; leu 98.6 2.8E-07 9.6E-12 73.1 10.3 73 4-86 131-204 (454)
108 1o6v_A Internalin A; bacterial 98.6 1.9E-07 6.6E-12 73.9 9.4 34 25-58 262-296 (466)
109 2ast_B S-phase kinase-associat 98.6 1.1E-08 3.8E-13 77.3 2.0 34 4-37 118-151 (336)
110 3g39_A Variable lymphocyte rec 98.6 2.3E-07 7.8E-12 64.1 8.1 78 4-86 30-111 (170)
111 4ay9_X Follicle-stimulating ho 98.6 1.4E-07 4.7E-12 72.2 7.7 63 29-96 155-219 (350)
112 3j0a_A TOLL-like receptor 5; m 98.6 2.8E-07 9.5E-12 78.2 10.2 106 3-118 47-158 (844)
113 3oja_A Leucine-rich immune mol 98.6 8.6E-08 3E-12 76.7 6.7 76 4-86 99-178 (487)
114 3bz5_A Internalin-J, INLJ; leu 98.6 6.6E-07 2.2E-11 71.1 11.5 52 4-59 85-137 (457)
115 3bz5_A Internalin-J, INLJ; leu 98.6 5.6E-07 1.9E-11 71.4 10.8 73 4-86 42-115 (457)
116 2ifg_A High affinity nerve gro 98.6 1.8E-07 6.2E-12 71.2 7.7 99 8-119 12-114 (347)
117 2ast_B S-phase kinase-associat 98.5 1.3E-08 4.3E-13 77.0 0.3 84 4-92 93-182 (336)
118 1wwl_A Monocyte differentiatio 98.5 3.9E-07 1.3E-11 68.5 8.1 80 4-86 121-210 (312)
119 4b8c_D Glucose-repressible alc 98.5 1.1E-07 3.9E-12 79.6 5.1 111 18-147 214-326 (727)
120 1o6v_A Internalin A; bacterial 98.5 4.4E-07 1.5E-11 71.8 8.0 75 4-86 265-340 (466)
121 3g06_A SSPH2 (leucine-rich rep 98.5 1.1E-06 3.7E-11 72.6 10.1 49 4-58 61-110 (622)
122 1jl5_A Outer protein YOPM; leu 98.5 1.2E-06 4E-11 69.6 10.0 79 5-95 174-253 (454)
123 1ds9_A Outer arm dynein; leuci 98.4 4.8E-09 1.6E-13 74.1 -3.6 101 4-120 48-152 (198)
124 3g06_A SSPH2 (leucine-rich rep 98.4 1.2E-06 4.2E-11 72.2 10.0 35 77-119 261-295 (622)
125 3cvr_A Invasion plasmid antige 98.4 9.7E-07 3.3E-11 72.1 8.7 12 108-119 230-241 (571)
126 3cvr_A Invasion plasmid antige 98.4 2.2E-06 7.5E-11 70.1 9.8 10 77-86 140-149 (571)
127 4glp_A Monocyte differentiatio 98.3 3.2E-07 1.1E-11 68.9 3.9 33 4-37 145-178 (310)
128 2ifg_A High affinity nerve gro 98.3 1.4E-06 4.9E-11 66.2 6.6 79 3-86 30-112 (347)
129 4glp_A Monocyte differentiatio 98.3 2.4E-06 8.2E-11 64.1 7.8 79 4-86 91-178 (310)
130 3e4g_A ATP synthase subunit S, 98.3 3.9E-07 1.3E-11 63.6 3.1 94 20-122 53-153 (176)
131 1ds9_A Outer arm dynein; leuci 98.0 7.8E-08 2.7E-12 67.8 -5.4 80 4-89 70-151 (198)
132 3e4g_A ATP synthase subunit S, 97.9 8.5E-06 2.9E-10 56.8 4.4 82 5-92 62-153 (176)
133 2ca6_A RAN GTPase-activating p 97.9 3.9E-06 1.3E-10 64.7 2.8 78 4-86 159-253 (386)
134 2ca6_A RAN GTPase-activating p 97.9 3.9E-06 1.4E-10 64.7 2.4 55 4-59 187-254 (386)
135 3sb4_A Hypothetical leucine ri 97.9 7E-05 2.4E-09 56.5 8.6 77 4-86 226-306 (329)
136 3goz_A Leucine-rich repeat-con 97.7 7.1E-06 2.4E-10 62.9 1.5 36 4-40 109-151 (362)
137 2p1m_B Transport inhibitor res 97.7 7.8E-06 2.7E-10 66.0 0.9 16 76-92 210-225 (594)
138 3ogk_B Coronatine-insensitive 97.6 3.2E-05 1.1E-09 62.4 3.3 102 4-119 403-524 (592)
139 2p1m_B Transport inhibitor res 97.5 1.6E-05 5.6E-10 64.1 0.0 107 4-120 397-518 (594)
140 3goz_A Leucine-rich repeat-con 97.5 4.6E-05 1.6E-09 58.3 2.4 32 5-37 23-60 (362)
141 3sb4_A Hypothetical leucine ri 97.4 0.00075 2.6E-08 50.8 8.2 34 49-86 226-259 (329)
142 3ogk_B Coronatine-insensitive 97.3 0.00017 5.7E-09 58.2 3.9 78 3-85 163-251 (592)
143 1z7x_W Ribonuclease inhibitor; 97.3 2.4E-05 8.1E-10 61.3 -1.2 78 4-86 28-122 (461)
144 1z7x_W Ribonuclease inhibitor; 97.3 1.4E-05 4.6E-10 62.7 -2.8 33 4-37 256-293 (461)
145 2ra8_A Uncharacterized protein 97.1 0.00033 1.1E-08 54.0 4.1 32 3-37 171-202 (362)
146 4fdw_A Leucine rich hypothetic 97.0 0.0042 1.4E-07 48.4 8.9 73 5-84 158-233 (401)
147 2ra8_A Uncharacterized protein 96.9 0.0053 1.8E-07 47.3 8.9 112 4-119 139-263 (362)
148 3rw6_A Nuclear RNA export fact 96.7 0.00058 2E-08 50.6 1.8 66 25-95 167-237 (267)
149 4fdw_A Leucine rich hypothetic 96.4 0.036 1.2E-06 43.0 10.3 74 4-84 203-278 (401)
150 1io0_A Tropomodulin; LRR prote 96.1 0.0012 4E-08 45.9 0.4 105 3-119 35-162 (185)
151 3un9_A NLR family member X1; l 96.1 0.00039 1.3E-08 53.7 -2.3 34 49-86 155-192 (372)
152 3rw6_A Nuclear RNA export fact 96.0 0.0069 2.4E-07 44.8 4.3 62 49-119 170-231 (267)
153 3rfe_A Platelet glycoprotein I 96.0 0.011 3.7E-07 38.8 4.7 50 32-86 12-64 (130)
154 3un9_A NLR family member X1; l 95.9 0.0014 4.7E-08 50.6 0.1 81 27-119 154-250 (372)
155 4gt6_A Cell surface protein; l 94.8 0.19 6.3E-06 38.5 9.0 79 26-119 286-368 (394)
156 4h09_A Hypothetical leucine ri 94.0 0.25 8.5E-06 37.4 7.9 13 25-37 237-249 (379)
157 4gt6_A Cell surface protein; l 93.5 0.2 6.7E-06 38.4 6.7 75 5-86 289-366 (394)
158 3rfe_A Platelet glycoprotein I 93.1 0.17 6E-06 32.8 5.0 43 15-59 18-65 (130)
159 4fs7_A Uncharacterized protein 91.6 0.41 1.4E-05 36.6 6.2 80 23-117 292-375 (394)
160 4h09_A Hypothetical leucine ri 90.4 0.56 1.9E-05 35.5 5.9 77 4-86 240-319 (379)
161 1io0_A Tropomodulin; LRR prote 89.8 0.039 1.3E-06 38.0 -1.0 78 4-86 65-160 (185)
162 4fs7_A Uncharacterized protein 87.4 1.4 4.6E-05 33.6 6.2 76 23-116 271-351 (394)
163 1pgv_A TMD-1, tropomodulin TMD 64.8 1.4 4.9E-05 30.8 0.1 79 4-86 41-135 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=4.7e-12 Score=96.60 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=63.8
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
++|++|++++| .++.+|.++..+++|++|++++ .+..+|.. +..++|+.|++++|.... .+|. .+..+++|++
T Consensus 183 ~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~---~~~~l~~L~~ 257 (328)
T 4fcg_A 183 VNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-NYPP---IFGGRAPLKR 257 (328)
T ss_dssp TTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-BCCC---CTTCCCCCCE
T ss_pred CCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-hhHH---HhcCCCCCCE
Confidence 45555555553 4445555556666666666666 55555442 123466667776665554 5555 3666667777
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIA 122 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~ 122 (157)
|++++ |+..+.+|..+..+ ++|+.|++++|+.+.
T Consensus 258 L~L~~-n~~~~~~p~~~~~l------~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 258 LILKD-CSNLLTLPLDIHRL------TQLEKLDLRGCVNLS 291 (328)
T ss_dssp EECTT-CTTCCBCCTTGGGC------TTCCEEECTTCTTCC
T ss_pred EECCC-CCchhhcchhhhcC------CCCCEEeCCCCCchh
Confidence 77776 66666666555555 577777777776543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.2e-11 Score=94.37 Aligned_cols=130 Identities=25% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCC----------CCCccEEEecCCCCchhhhhhccc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGL----------PTNLHSLWIDGNKKIWKSMIERGR 71 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~----------~~~L~~L~i~~c~~l~~~lp~~~~ 71 (157)
++|++|++++| .+..+|..+.++++|++|++++ .+..+|.... .++|+.|++++| .+. .+|.
T Consensus 127 ~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~--- 200 (328)
T 4fcg_A 127 AGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPA--- 200 (328)
T ss_dssp TTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCG---
T ss_pred CCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchH---
Confidence 46667777664 4556666666666666666665 3344443210 345666666553 444 4544
Q ss_pred cCCCCCccCEEEEecCCCCCcccCcccccC-----------------CCC-CCCCCccEEeeeCChhHHHhhccCCCCCc
Q 040713 72 GFHRFSSLRHLTISGCDDDMVSFPPELKYF-----------------PEK-GLPSSLLQLWIWGCPLIAEKCRKDGGQYW 133 (157)
Q Consensus 72 ~l~~l~~L~~L~i~~~c~~l~~lp~~l~~l-----------------p~~-~l~~~L~~L~i~~c~~l~~~~~~~~~~~~ 133 (157)
.+..+++|++|++++ +.+..+|..+..+ |.. +-.++|+.|++++|..... ....+
T Consensus 201 ~l~~l~~L~~L~L~~--N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-----~p~~~ 273 (328)
T 4fcg_A 201 SIANLQNLKSLKIRN--SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-----LPLDI 273 (328)
T ss_dssp GGGGCTTCCEEEEES--SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-----CCTTG
T ss_pred hhcCCCCCCEEEccC--CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-----cchhh
Confidence 245555555555555 2333343322222 110 1125677777776654321 11224
Q ss_pred ccccccceeEECc
Q 040713 134 DLLTHIPSVSIAN 146 (157)
Q Consensus 134 ~~i~~l~~l~i~~ 146 (157)
..+.++..+.+.+
T Consensus 274 ~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 274 HRLTQLEKLDLRG 286 (328)
T ss_dssp GGCTTCCEEECTT
T ss_pred hcCCCCCEEeCCC
Confidence 4455666666655
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=1.2e-10 Score=84.38 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=77.0
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..+ |..+..+++|+.|++++ .+..++...+ .++|+.|+++++ .++ .++.. .+..+++|
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~--~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLT-VLPSA--VFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCC-ccChh--HhCcchhh
Confidence 58999999986 55555 66778899999999999 8888887543 468999999885 676 66654 46788999
Q ss_pred CEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 80 RHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
++|++++ +.+..+|..+..+ ++|+.|+++++
T Consensus 115 ~~L~Ls~--N~l~~lp~~~~~l------~~L~~L~L~~N 145 (229)
T 3e6j_A 115 KELFMCC--NKLTELPRGIERL------THLTHLALDQN 145 (229)
T ss_dssp CEEECCS--SCCCSCCTTGGGC------TTCSEEECCSS
T ss_pred CeEeccC--CcccccCcccccC------CCCCEEECCCC
Confidence 9999987 5677777655444 56777777665
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=4.6e-10 Score=79.45 Aligned_cols=103 Identities=25% Similarity=0.406 Sum_probs=82.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|+++++ .+..+|..+..+++|+.|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~-~i~~~--~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLR-CIPPR--TFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-BCCTT--TTTTCTTCC
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccC-EeCHH--HhCCCCCCC
Confidence 58999999985 7888998889999999999999 8888887644 379999999885 676 66654 688899999
Q ss_pred EEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 81 HLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++++ +.+..+|.. +..+ ++|+.|++.+++
T Consensus 106 ~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHG--NDISVVPEGAFNDL------SALSHLAIGANP 137 (193)
T ss_dssp EEECCS--SCCCBCCTTTTTTC------TTCCEEECCSSC
T ss_pred EEECCC--CCCCeeChhhhhcC------ccccEEEeCCCC
Confidence 999998 556555542 3333 789999998754
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.11 E-value=9.1e-10 Score=80.59 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++++.|+++++ .+..++ ..+.++++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLA-SLPLG--VFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-ccc-ccChh--HhcccCCC
Confidence 35666666654 333333 2345556666666665 5555444322 245555555543 333 33322 34444555
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 110 ~~L~L~~ 116 (251)
T 3m19_A 110 DKLYLGG 116 (251)
T ss_dssp CEEECCS
T ss_pred CEEEcCC
Confidence 5555554
No 6
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=5.2e-10 Score=79.08 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=55.3
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCC--CCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSL--EEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~l--p~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
+|++|++++| .+..++ .+..+++|++|++++ .+... ..-+..++|+.|++++| .+....+. .+..+++|++
T Consensus 67 ~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~---~l~~l~~L~~ 140 (197)
T 4ezg_A 67 NIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILT---KINTLPKVNS 140 (197)
T ss_dssp TCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHH---HHTTCSSCCE
T ss_pred CCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHH---HHhhCCCCCE
Confidence 4455555544 333222 344455555555555 33321 11112245555555553 22212233 2455555666
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
|++++ |..+..+| .+..+ ++|+.|++++|. +. ....+..+.+++.+.+.+.
T Consensus 141 L~L~~-n~~i~~~~-~l~~l------~~L~~L~l~~n~-i~------~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 141 IDLSY-NGAITDIM-PLKTL------PELKSLNIQFDG-VH------DYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCS-CTBCCCCG-GGGGC------SSCCEEECTTBC-CC------CCTTGGGCSSCCEEEECBC
T ss_pred EEccC-CCCccccH-hhcCC------CCCCEEECCCCC-Cc------ChHHhccCCCCCEEEeeCc
Confidence 66655 44344443 23333 466666666553 11 1113444556666666653
No 7
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=3.5e-10 Score=77.84 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=79.7
Q ss_pred CCcceEeeecCcCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|++++| .+. .+|..+..+++|+.|++++ .+..+..-...++|+.|++++| .+...+|. .+..+++|+
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDM---LAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCH---HHHHCTTCC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHH---HHhhCCCCC
Confidence 68999999997 466 7888889999999999999 7777743344579999999986 45423555 355689999
Q ss_pred EEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCCh
Q 040713 81 HLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++++ +.+..+| ..+..+ ++|+.|++++|+
T Consensus 99 ~L~Ls~--N~l~~~~~~~~l~~l------~~L~~L~l~~N~ 131 (168)
T 2ell_A 99 HLNLSG--NKLKDISTLEPLKKL------ECLKSLDLFNCE 131 (168)
T ss_dssp EEECBS--SSCCSSGGGGGGSSC------SCCCEEECCSSG
T ss_pred EEeccC--CccCcchhHHHHhcC------CCCCEEEeeCCc
Confidence 999998 4566655 344444 789999999986
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.08 E-value=5.5e-10 Score=90.65 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=78.9
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+++++|++++ +.++.+|+ .+.++++|++|++++ .+..++++.+ .++|++|+++++ .++ .+|.. .+.++++|
T Consensus 52 ~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~-~l~~~--~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ-SLALG--AFSGLSSL 126 (635)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC-EECGG--GGTTCTTC
T ss_pred cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC-CCCHH--HhcCCCCC
Confidence 5899999998 47888875 678999999999999 8988887654 379999999886 576 77764 57889999
Q ss_pred CEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..+|. .+..+ ++|++|+++++.
T Consensus 127 ~~L~Ls~--N~l~~l~~~~~~~L------~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 127 QKLVAVE--TNLASLENFPIGHL------KTLKELNVAHNL 159 (635)
T ss_dssp CEEECTT--SCCCCSTTCCCTTC------TTCCEEECCSSC
T ss_pred CEEECCC--CcCCCCChhhhhcC------cccCeeccccCc
Confidence 9999998 44555543 13333 577777777653
No 9
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.07 E-value=4.2e-10 Score=81.69 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=74.8
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-c-ccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-E-LPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~-l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
++|++|+++++ .++.+|. .+..+++|++|++++ . +..++...+ .++|+.|++++|+.++ .++.. .+.++++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~--~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPD--ALKELPL 106 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTT--SEECCTT
T ss_pred CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHH--HhCCCCC
Confidence 48999999985 6777776 677899999999998 5 888887543 3689999998867787 67654 5778899
Q ss_pred cCEEEEecCCCCCcccCcccccCCCCCCCCCcc---EEeeeCC
Q 040713 79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLL---QLWIWGC 118 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~---~L~i~~c 118 (157)
|++|++++ +.++.+|. +..+ ++|+ .|+++++
T Consensus 107 L~~L~l~~--n~l~~lp~-~~~l------~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 107 LKFLGIFN--TGLKMFPD-LTKV------YSTDIFFILEITDN 140 (239)
T ss_dssp CCEEEEEE--ECCCSCCC-CTTC------CBCCSEEEEEEESC
T ss_pred CCEEeCCC--CCCccccc-cccc------cccccccEEECCCC
Confidence 99999988 44555663 3322 3444 6666665
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.07 E-value=2.4e-09 Score=76.07 Aligned_cols=125 Identities=26% Similarity=0.423 Sum_probs=80.9
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..++.. +..+++|++|++++ .+..++...+ .++|++|+++++ .+. .++.. .+..+++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ-SLPNG--VFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCC-ccCHh--HhcCccCC
Confidence 47889999885 56666654 57889999999998 8888876543 368999999875 565 56553 46778889
Q ss_pred CEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713 80 RHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN 146 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~ 146 (157)
++|++++ +.+..+|.. +..+ ++|+.|+++++. +. ......+..+.++..+.+.+
T Consensus 103 ~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~-l~----~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 103 KELALNT--NQLQSLPDGVFDKL------TQLKDLRLYQNQ-LK----SVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC--CcCcccCHhHhccC------CcCCEEECCCCc-cc----eeCHHHhccCCCccEEEecC
Confidence 9998887 445544432 2222 577777776653 11 11112234455555555554
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=2.4e-09 Score=75.60 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=91.6
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|+++++ .+..+| ++..+++|++|++++ .+..++.-...++|++|++++| .+....+. .+..+++|++|
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~---~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIP---NLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSC---CCTTCTTCCEE
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccCh---hhcCCCCCCEE
Confidence 47999999995 677888 788999999999999 7776665445579999999986 55423455 58889999999
Q ss_pred EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
++++ |.-....|..+..+ ++|++|++++|..+... ..+..+.++..+.+.+.
T Consensus 118 ~Ls~-n~i~~~~~~~l~~l------~~L~~L~L~~n~~i~~~------~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 118 DISH-SAHDDSILTKINTL------PKVNSIDLSYNGAITDI------MPLKTLPELKSLNIQFD 169 (197)
T ss_dssp ECCS-SBCBGGGHHHHTTC------SSCCEEECCSCTBCCCC------GGGGGCSSCCEEECTTB
T ss_pred EecC-CccCcHhHHHHhhC------CCCCEEEccCCCCcccc------HhhcCCCCCCEEECCCC
Confidence 9998 44332344445555 79999999998744321 23455667777777664
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.06 E-value=2.7e-09 Score=78.85 Aligned_cols=54 Identities=30% Similarity=0.559 Sum_probs=28.6
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecC
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDG 58 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~ 58 (157)
+++++|+++++ .+..++. .+..+++|++|++++ .+..++...+ .++|++|++++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35666666664 3444443 455566666666665 5555554322 24555555554
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.06 E-value=6.4e-10 Score=80.72 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=45.9
Q ss_pred CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCcc---EEEecCCCCchhhhhhccccCCCCCcc
Q 040713 5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLH---SLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~---~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+|++|++++|+.++.++. .+..+++|++|++++ .+..+|.-+..++|+ .|+++++..++ .++.. .+..+++|
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~-~i~~~--~~~~l~~L 157 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVN--AFQGLCNE 157 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC-EECTT--TTTTTBSS
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchh-hcCcc--cccchhcc
Confidence 444444444333444332 233444444444444 444444322223343 55555443444 44432 34455555
Q ss_pred C-EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhH
Q 040713 80 R-HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLI 121 (157)
Q Consensus 80 ~-~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l 121 (157)
+ +|++++ +.++.+|...- -.++|+.|++.+++.+
T Consensus 158 ~~~L~l~~--n~l~~i~~~~~------~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 158 TLTLKLYN--NGFTSVQGYAF------NGTKLDAVYLNKNKYL 192 (239)
T ss_dssp EEEEECCS--CCCCEECTTTT------TTCEEEEEECTTCTTC
T ss_pred eeEEEcCC--CCCcccCHhhc------CCCCCCEEEcCCCCCc
Confidence 5 555555 22333332110 1146677777666433
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.05 E-value=1.5e-09 Score=78.15 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=37.9
Q ss_pred CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
+|+.|+++++ .++.++. .+..+++|+.|++++ .+..+.+..+ .++|++|+++++ .++ .+|.. .+..+++|+
T Consensus 33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~--~f~~l~~L~ 107 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KIT-ELPKS--LFEGLFSLQ 107 (220)
T ss_dssp TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCC-CCCTT--TTTTCTTCC
T ss_pred CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCC-ccCHh--HccCCCCCC
Confidence 5566666553 4444443 445555555665555 5544433322 245555555542 343 44432 344455555
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
+|++++
T Consensus 108 ~L~L~~ 113 (220)
T 2v9t_B 108 LLLLNA 113 (220)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555554
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=2.1e-09 Score=80.57 Aligned_cols=85 Identities=22% Similarity=0.363 Sum_probs=49.4
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|+++++ .+..+|..+..+++|++|++++ .+..++...+ .++|+.|+++++ .+. .+|.. .+..+++|+
T Consensus 77 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~L~ 151 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELK-TLPPG--LLTPTPKLE 151 (290)
T ss_dssp TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTTCC
T ss_pred CcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCC-ccChh--hcccccCCC
Confidence 45666666663 5556666666666777777766 6666665432 246666666653 444 44443 345566666
Q ss_pred EEEEecCCCCCcccC
Q 040713 81 HLTISGCDDDMVSFP 95 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp 95 (157)
.|++++ +.++.+|
T Consensus 152 ~L~L~~--N~l~~l~ 164 (290)
T 1p9a_G 152 KLSLAN--NNLTELP 164 (290)
T ss_dssp EEECTT--SCCSCCC
T ss_pred EEECCC--CcCCccC
Confidence 666665 3344444
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.04 E-value=2.3e-09 Score=77.23 Aligned_cols=104 Identities=19% Similarity=0.362 Sum_probs=76.1
Q ss_pred CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|+.|+++++ .+..+ |..+..+++|++|++++ .+..+|...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 55 l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~ 129 (220)
T 2v9t_B 55 YKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KIN-CLRVD--AFQDLHN 129 (220)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred CCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCC-EeCHH--HcCCCCC
Confidence 358899999885 55555 67788899999999998 8888887643 368999999875 565 55443 5788899
Q ss_pred cCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+..++.. +..+ ++|+.|++.+++
T Consensus 130 L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~ 163 (220)
T 2v9t_B 130 LNLLSLYD--NKLQTIAKGTFSPL------RAIQTMHLAQNP 163 (220)
T ss_dssp CCEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSSC
T ss_pred CCEEECCC--CcCCEECHHHHhCC------CCCCEEEeCCCC
Confidence 99999988 545554431 2333 688899988765
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.02 E-value=2.5e-09 Score=79.42 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-c-ccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-E-LPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~-l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
++|++|+++++ .+..+ |..+..+++|++|++++ . +..++...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 56 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~ 130 (285)
T 1ozn_A 56 RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQ-ELGPG--LFRGLAA 130 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTT
T ss_pred CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCC-EECHh--HhhCCcC
Confidence 45666666554 33333 44455555566666655 3 554433322 245555555543 222 22211 2444445
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|++|++++
T Consensus 131 L~~L~l~~ 138 (285)
T 1ozn_A 131 LQYLYLQD 138 (285)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 55555544
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=4.7e-09 Score=76.75 Aligned_cols=127 Identities=23% Similarity=0.341 Sum_probs=92.6
Q ss_pred CCCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|+++++ .+..++. .+..+++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 58 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~ 132 (251)
T 3m19_A 58 LTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLK-SLPSG--VFDRLTK 132 (251)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred cccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCC-CcChh--HhccCCc
Confidence 368999999996 5666554 568999999999999 8888886643 479999999885 676 67654 4678999
Q ss_pred cCEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 79 LRHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
|++|++++ +.+..+|. .+..+ ++|+.|+++++. +. ......+..+.++..+.+.+.
T Consensus 133 L~~L~Ls~--N~l~~~~~~~~~~l------~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 133 LKELRLNT--NQLQSIPAGAFDKL------TNLQTLSLSTNQ-LQ----SVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSC
T ss_pred ccEEECcC--CcCCccCHHHcCcC------cCCCEEECCCCc-CC----ccCHHHHhCCCCCCEEEeeCC
Confidence 99999998 45655554 23333 789999998874 21 112234566777888887764
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=3.1e-09 Score=83.66 Aligned_cols=77 Identities=23% Similarity=0.447 Sum_probs=33.3
Q ss_pred CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
+|++|+++++ .+..++ ..+.++++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|+
T Consensus 89 ~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~-~~~~~--~~~~l~~L~ 163 (440)
T 3zyj_A 89 HLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIE-SIPSY--AFNRIPSLR 163 (440)
T ss_dssp SCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCC-EECTT--TTTTCTTCC
T ss_pred CCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-ccc-ccCHH--HhhhCcccC
Confidence 4444555443 233332 3344455555555555 4444444321 234555555443 233 33322 334444444
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
+|++++
T Consensus 164 ~L~l~~ 169 (440)
T 3zyj_A 164 RLDLGE 169 (440)
T ss_dssp EEECCC
T ss_pred EeCCCC
Confidence 444444
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.00 E-value=2.5e-09 Score=84.47 Aligned_cols=66 Identities=24% Similarity=0.373 Sum_probs=27.3
Q ss_pred cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCccc
Q 040713 24 LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF 94 (157)
Q Consensus 24 ~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~l 94 (157)
+.++++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|++|++++ |+.++.+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~L~~L~l~~-~~~l~~i 187 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIE-SIPSY--AFNRVPSLMRLDLGE-LKKLEYI 187 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCC-EECTT--TTTTCTTCCEEECCC-CTTCCEE
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-Ccc-eeCHh--HHhcCCcccEEeCCC-CCCcccc
Confidence 33444444444444 4444443321 234445554443 233 33332 334444444444444 4443333
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=2.5e-09 Score=76.98 Aligned_cols=77 Identities=14% Similarity=0.354 Sum_probs=34.9
Q ss_pred CcceEeeecCcCCcccCc--ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 5 KLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
.+++|+++++ .+..++. .+..+++|+.|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLE-NVQHK--MFKGLESL 107 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-CCCGG--GGTTCSSC
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccC-ccCHh--HhcCCcCC
Confidence 4555555553 3444421 234555555555555 4444443221 235555555443 333 33322 34445555
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 108 ~~L~Ls~ 114 (220)
T 2v70_A 108 KTLMLRS 114 (220)
T ss_dssp CEEECTT
T ss_pred CEEECCC
Confidence 5555554
No 22
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=4.2e-09 Score=73.01 Aligned_cols=103 Identities=28% Similarity=0.549 Sum_probs=78.2
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..+|.. +..+++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~-~~~~~--~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQ-SLPNG--VFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Ccc-ccCHH--HhhCCccc
Confidence 58999999985 56677654 57899999999999 8888887543 479999999885 666 66653 46788999
Q ss_pred CEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..+|... ..+ ++|+.|++.+++
T Consensus 103 ~~L~l~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~ 135 (177)
T 2o6r_A 103 KELALDT--NQLKSVPDGIFDRL------TSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSSC
T ss_pred CEEECcC--CcceEeCHHHhcCC------cccCEEEecCCC
Confidence 9999998 4565555432 333 689999998865
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.99 E-value=5.4e-09 Score=77.36 Aligned_cols=77 Identities=26% Similarity=0.375 Sum_probs=35.4
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|+++++ .+..++ .+..+++|++|++++ .+..++...+ .++|+.|++++| .+. .++.. .+..+++|+
T Consensus 63 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L~ 136 (272)
T 3rfs_A 63 PNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQ-SLPDG--VFDKLTNLT 136 (272)
T ss_dssp TTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTTCC
T ss_pred CCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCC-ccCHH--HhccCCCCC
Confidence 45555555553 333332 344555555555555 4444444321 245555555443 233 23321 234445555
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
+|++++
T Consensus 137 ~L~L~~ 142 (272)
T 3rfs_A 137 YLNLAH 142 (272)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555544
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.98 E-value=6.5e-09 Score=76.80 Aligned_cols=78 Identities=29% Similarity=0.428 Sum_probs=50.0
Q ss_pred CCcceEeeecCcCCcccCccc-CCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..+|... ..+++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|
T Consensus 61 ~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L 135 (270)
T 2o6q_A 61 TKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLK-SLPPR--VFDSLTKL 135 (270)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccC-eeCHH--HhCcCcCC
Confidence 57788888774 566666544 5677888888877 7776665432 356777777664 444 44433 35566667
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 136 ~~L~Ls~ 142 (270)
T 2o6q_A 136 TYLSLGY 142 (270)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 7776666
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.97 E-value=4.4e-09 Score=75.70 Aligned_cols=103 Identities=17% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .++.++. .+..+++|++|++++ .+..++...+ .++|++|+++++ .+. .++.. .+..+++|
T Consensus 57 ~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L 131 (220)
T 2v70_A 57 PQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RIT-CVGND--SFIGLSSV 131 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCC-CBCTT--SSTTCTTC
T ss_pred CCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCC-eECHh--HcCCCccC
Confidence 57889999885 5666655 678899999999998 8888776533 368999999875 565 45333 57888999
Q ss_pred CEEEEecCCCCCccc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSF-PPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~l-p~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..+ |..+..+ ++|+.|++.+++
T Consensus 132 ~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~ 164 (220)
T 2v70_A 132 RLLSLYD--NQITTVAPGAFDTL------HSLSTLNLLANP 164 (220)
T ss_dssp SEEECTT--SCCCCBCTTTTTTC------TTCCEEECCSCC
T ss_pred CEEECCC--CcCCEECHHHhcCC------CCCCEEEecCcC
Confidence 9999988 445554 3344444 688899988765
No 26
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=6.6e-09 Score=76.79 Aligned_cols=98 Identities=24% Similarity=0.357 Sum_probs=58.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|+++++ .+..++. +..+++|+.|++++ .+..++.... ++|+.|++++| .+. .++ .+..+++|++|
T Consensus 63 ~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N-~l~-~~~----~l~~l~~L~~L 133 (263)
T 1xeu_A 63 TNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN-ELR-DTD----SLIHLKNLEIL 133 (263)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSS-CCS-BSG----GGTTCTTCCEE
T ss_pred CCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCC-ccC-CCh----hhcCcccccEE
Confidence 45666666654 4555554 55666666666666 5555554433 56777777664 454 443 35667777777
Q ss_pred EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++++ +.++.+| .+..+ ++|+.|++++|.
T Consensus 134 ~Ls~--N~i~~~~-~l~~l------~~L~~L~L~~N~ 161 (263)
T 1xeu_A 134 SIRN--NKLKSIV-MLGFL------SKLEVLDLHGNE 161 (263)
T ss_dssp ECTT--SCCCBCG-GGGGC------TTCCEEECTTSC
T ss_pred ECCC--CcCCCCh-HHccC------CCCCEEECCCCc
Confidence 7776 4455443 33333 577777777654
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=6.3e-09 Score=73.88 Aligned_cols=104 Identities=28% Similarity=0.486 Sum_probs=80.3
Q ss_pred CCCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|+++++ .++.+|.. +..+++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~ 125 (208)
T 2o6s_A 51 LTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQ-SLPDG--VFDKLTQ 125 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred cccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCc-ccCHh--HhccCCc
Confidence 368999999995 67777764 57899999999999 8888887543 479999999885 666 66654 5788999
Q ss_pred cCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+..+|.. +..+ ++|+.|++.+++
T Consensus 126 L~~L~l~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~ 159 (208)
T 2o6s_A 126 LKDLRLYQ--NQLKSVPDGVFDRL------TSLQYIWLHDNP 159 (208)
T ss_dssp CCEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSCC
T ss_pred CCEEECCC--CccceeCHHHhccC------CCccEEEecCCC
Confidence 99999998 445555432 2333 789999998853
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.96 E-value=5.1e-09 Score=78.45 Aligned_cols=104 Identities=26% Similarity=0.339 Sum_probs=83.4
Q ss_pred CCCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|+++++ .++.+| ..+..+++|++|++++ .+..+|.+.+ .++|+.|+++++ .++ .+|.. .+..+++
T Consensus 99 l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~l~~~--~~~~l~~ 173 (290)
T 1p9a_G 99 LPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLT-ELPAG--LLNGLEN 173 (290)
T ss_dssp CTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCS-CCCTT--TTTTCTT
T ss_pred CCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCC-ccCHH--HhcCcCC
Confidence 368999999995 677776 4578999999999999 9999988654 379999999885 676 78765 5678999
Q ss_pred cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+..+|..+... .+|+.+++.+++
T Consensus 174 L~~L~L~~--N~l~~ip~~~~~~------~~L~~l~L~~Np 206 (290)
T 1p9a_G 174 LDTLLLQE--NSLYTIPKGFFGS------HLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECCS--SCCCCCCTTTTTT------CCCSEEECCSCC
T ss_pred CCEEECCC--CcCCccChhhccc------ccCCeEEeCCCC
Confidence 99999998 5566666554443 589999998754
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.95 E-value=7.8e-09 Score=76.75 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..++ ..+..+++|++|++++ .+..++...+ .++|+.|+++++..+. .++.. .+..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~--~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPA--TFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTT--TTTTCTTC
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHH--HhcCCcCC
Confidence 58999999995 566666 4678999999999999 7877754433 3799999999876576 56433 58889999
Q ss_pred CEEEEecCCCCCccc
Q 040713 80 RHLTISGCDDDMVSF 94 (157)
Q Consensus 80 ~~L~i~~~c~~l~~l 94 (157)
++|++++ +. +..+
T Consensus 108 ~~L~l~~-n~-l~~~ 120 (285)
T 1ozn_A 108 HTLHLDR-CG-LQEL 120 (285)
T ss_dssp CEEECTT-SC-CCCC
T ss_pred CEEECCC-Cc-CCEE
Confidence 9999998 43 4443
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.94 E-value=4.9e-09 Score=75.86 Aligned_cols=103 Identities=29% Similarity=0.493 Sum_probs=82.0
Q ss_pred CCCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|+++++ .+..+|.. +..+++|+.|++++ .+..++...+ .++|+.|+++++ .+. .+|. .+..+++
T Consensus 63 l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~-~lp~---~~~~l~~ 136 (229)
T 3e6j_A 63 LINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLT-ELPR---GIERLTH 136 (229)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-SCCT---TGGGCTT
T ss_pred ccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-ccc-ccCc---ccccCCC
Confidence 468999999995 67888754 57999999999999 9998887643 479999999874 677 7887 4788999
Q ss_pred cCEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+..+|. .+..+ ++|+.|++.+++
T Consensus 137 L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~ 170 (229)
T 3e6j_A 137 LTHLALDQ--NQLKSIPHGAFDRL------SSLTHAYLFGNP 170 (229)
T ss_dssp CSEEECCS--SCCCCCCTTTTTTC------TTCCEEECTTSC
T ss_pred CCEEECCC--CcCCccCHHHHhCC------CCCCEEEeeCCC
Confidence 99999998 55665553 23333 789999998865
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=1.8e-09 Score=72.77 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=80.2
Q ss_pred CCcceEeeecCcCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|+.|++++| .+. .+|..+..+++|+.|++++ .+..++.-+..++|+.|++++| .+...+|. .+..+++|+
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~---~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN-RVSGGLEV---LAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSS-CCCSCTHH---HHHHCTTCC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCC-cccchHHH---HhhhCCCCC
Confidence 58999999997 455 7888889999999999999 7777743344579999999986 55523665 356689999
Q ss_pred EEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCCh
Q 040713 81 HLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++++ +.+..+| ..+..+ ++|++|++++|+
T Consensus 92 ~L~ls~--N~i~~~~~~~~~~~l------~~L~~L~l~~N~ 124 (149)
T 2je0_A 92 HLNLSG--NKIKDLSTIEPLKKL------ENLKSLDLFNCE 124 (149)
T ss_dssp EEECTT--SCCCSHHHHGGGGGC------TTCCEEECTTCG
T ss_pred EEECCC--CcCCChHHHHHHhhC------CCCCEEeCcCCc
Confidence 999998 4466554 445555 689999999985
No 32
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=5.7e-09 Score=73.55 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=76.8
Q ss_pred CCcceEeeecCcCCcccCcc--cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEALPKG--LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
++|++|+++++ .+..++.. +..+++|++|++++ .+..+++..+ .++|+.|+++++ .++ .++.. .+.++++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIK-EISNK--MFLGLHQ 103 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCC-EECSS--SSTTCTT
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCC-ccCHH--HhcCCCC
Confidence 38899999885 67777653 78899999999999 8888765443 368999999885 666 55543 5788999
Q ss_pred cCEEEEecCCCCCccc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSF-PPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~l-p~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+..+ |..+..+ ++|+.|++++++
T Consensus 104 L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~ 137 (192)
T 1w8a_A 104 LKTLNLYD--NQISCVMPGSFEHL------NSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCS--SCCCEECTTSSTTC------TTCCEEECTTCC
T ss_pred CCEEECCC--CcCCeeCHHHhhcC------CCCCEEEeCCCC
Confidence 99999998 445443 3344444 689999998864
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.94 E-value=2.4e-09 Score=81.94 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .++.++. .+.++++|++|++++ .+..++...+ .++|++|+++++ .++ .++.. .+.++++|
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLS-NLSSS--WFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCS-SCCHH--HHTTCTTC
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCC-cCCHh--HhCCCccC
Confidence 47888888875 5666665 667888888888887 7776655433 357888888764 555 55542 36677788
Q ss_pred CEEEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.++.+|. .+..+ ++|++|++++|.
T Consensus 127 ~~L~L~~--n~l~~l~~~~~~~~l------~~L~~L~l~~n~ 160 (353)
T 2z80_A 127 TFLNLLG--NPYKTLGETSLFSHL------TKLQILRVGNMD 160 (353)
T ss_dssp SEEECTT--CCCSSSCSSCSCTTC------TTCCEEEEEESS
T ss_pred CEEECCC--CCCcccCchhhhccC------CCCcEEECCCCc
Confidence 8888877 34444443 22222 566666666653
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.93 E-value=9.8e-09 Score=80.82 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
++|++|++++|+.+..++. .+..+++|++|++++ .+..+|.....++|+.|+++++ .+. .++.. .+.++++|++
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~ 235 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLS-AIRPG--SFQGLMHLQK 235 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCC-EECTT--TTTTCTTCCE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC-ccC-ccChh--hhccCccCCE
Confidence 3555555555545554443 345666666666666 6666654444456667776664 444 33222 4566666666
Q ss_pred EEEec
Q 040713 82 LTISG 86 (157)
Q Consensus 82 L~i~~ 86 (157)
|++++
T Consensus 236 L~L~~ 240 (440)
T 3zyj_A 236 LWMIQ 240 (440)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 66665
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.92 E-value=7.6e-09 Score=81.32 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|+++++.-....|..+..+++|++|++++ .+..++...+ .++|+.|++++| .+. .++.. .+..+++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLG-SIDSR--MFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-EECGG--GGTTCTTCC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccC-CcChh--HhcCcccCC
Confidence 4788888888644444566778888888888888 7776655433 368888888875 454 44332 467788888
Q ss_pred EEEEecCCCCCccc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713 81 HLTISGCDDDMVSF-PPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 81 ~L~i~~~c~~l~~l-p~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++++ | .+..+ |..+..+ ++|++|+++++.
T Consensus 351 ~L~Ls~-N-~l~~~~~~~~~~l------~~L~~L~L~~N~ 382 (455)
T 3v47_A 351 VLDLSY-N-HIRALGDQSFLGL------PNLKELALDTNQ 382 (455)
T ss_dssp EEECCS-S-CCCEECTTTTTTC------TTCCEEECCSSC
T ss_pred EEECCC-C-cccccChhhcccc------ccccEEECCCCc
Confidence 888887 4 34433 3333333 566677766643
No 36
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=8.4e-09 Score=71.76 Aligned_cols=98 Identities=23% Similarity=0.465 Sum_probs=74.6
Q ss_pred ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
+.+++++ ..++.+|..+. ++|+.|++++ .+..+++..+ .++|+.|+++++ .++ .+|.. .+..+++|++|+
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~i~~~--~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLT-AIPTG--VFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTCCEEE
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCC-ccChh--HhCCcchhhEEE
Confidence 5677777 46888888664 8899999999 8888876543 468999999885 776 77764 467899999999
Q ss_pred EecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 84 ISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 84 i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+++ +.+..+|.. +..+ ++|+.|++.+++
T Consensus 88 L~~--N~l~~l~~~~~~~l------~~L~~L~L~~N~ 116 (174)
T 2r9u_A 88 LND--NHLKSIPRGAFDNL------KSLTHIYLYNNP 116 (174)
T ss_dssp CCS--SCCCCCCTTTTTTC------TTCSEEECCSSC
T ss_pred CCC--CccceeCHHHhccc------cCCCEEEeCCCC
Confidence 998 556666543 4444 789999998865
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.91 E-value=1.1e-08 Score=80.79 Aligned_cols=78 Identities=26% Similarity=0.383 Sum_probs=40.6
Q ss_pred CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
+|++|++++|+.+..++. .+..+++|+.|++++ .+..+|.....++|+.|+++++ .+. .++.. .+.++++|++|
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~L 247 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN-HFP-EIRPG--SFHGLSSLKKL 247 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS-CCS-EECGG--GGTTCTTCCEE
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC-cCc-ccCcc--cccCccCCCEE
Confidence 444455544444444443 244556666666665 5555554334456666666654 333 23222 35566666666
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 248 ~L~~ 251 (452)
T 3zyi_A 248 WVMN 251 (452)
T ss_dssp ECTT
T ss_pred EeCC
Confidence 6665
No 38
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.91 E-value=3.2e-09 Score=73.71 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
+++|+.|++++| .+..+|......++|+.|++++ .+..++.-+..++|+.|+++++ .+. .+|.. .+..+++|++
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RIC-RIGEG--LDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCC-EECSC--HHHHCTTCCE
T ss_pred cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-ccc-ccCcc--hhhcCCCCCE
Confidence 468889999886 6667754333344899999998 7766643334468999999875 565 56642 2367888999
Q ss_pred EEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713 82 LTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 82 L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++++ +.+..+|. .+..+ ++|+.|++++++
T Consensus 93 L~L~~--N~i~~~~~~~~l~~l------~~L~~L~l~~N~ 124 (176)
T 1a9n_A 93 LILTN--NSLVELGDLDPLASL------KSLTYLCILRNP 124 (176)
T ss_dssp EECCS--CCCCCGGGGGGGGGC------TTCCEEECCSSG
T ss_pred EECCC--CcCCcchhhHhhhcC------CCCCEEEecCCC
Confidence 99987 45666664 34444 678888888876
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.90 E-value=1.1e-08 Score=75.70 Aligned_cols=79 Identities=32% Similarity=0.429 Sum_probs=53.3
Q ss_pred CCCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|++++| .+..++.. +..+++|++|++++ .+..++...+ .++|+.|++++| .+. .++.. .+..+++
T Consensus 84 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~ 158 (272)
T 3rfs_A 84 LTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQ-SLPKG--VFDKLTN 158 (272)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred CCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccC-ccCHH--HhccCcc
Confidence 357888888875 55555543 56788888888887 7777766432 357888888775 555 55543 3566777
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|++|++++
T Consensus 159 L~~L~l~~ 166 (272)
T 3rfs_A 159 LTELDLSY 166 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 77777777
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=1.1e-08 Score=77.25 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=37.3
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|++++| .+..++. +..+++|++|++++ .+..++.-...++|+.|++++| .+. .++. +..+++|++|
T Consensus 63 ~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~-~~~~----l~~l~~L~~L 134 (308)
T 1h6u_A 63 NNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST-QIT-DVTP----LAGLSNLQVL 134 (308)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS-CCC-CCGG----GTTCTTCCEE
T ss_pred CCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC-CCC-Cchh----hcCCCCCCEE
Confidence 35555555553 3444444 55555555555555 4444443233345555555553 333 3332 4455555555
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 135 ~l~~ 138 (308)
T 1h6u_A 135 YLDL 138 (308)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5555
No 41
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=1.3e-08 Score=70.43 Aligned_cols=99 Identities=24% Similarity=0.424 Sum_probs=74.9
Q ss_pred cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
.+.+++++ +.++.+|..+ .++|+.|++++ .+..+++..+ .++|+.|+++++ .+. .+|.. .+..+++|++|
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~--~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLT-VLPAG--VFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTT--TTTTCTTCCEE
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcC-ccChh--hccCCCCCCEE
Confidence 46788887 4788888766 48899999999 8888876543 368999999885 676 67764 56889999999
Q ss_pred EEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 83 TISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++++ +.+..+|.. +..+ ++|+.|++++++
T Consensus 84 ~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~ 113 (170)
T 3g39_A 84 SLND--NQLKSIPRGAFDNL------KSLTHIWLLNNP 113 (170)
T ss_dssp ECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC
T ss_pred ECCC--CccCEeCHHHhcCC------CCCCEEEeCCCC
Confidence 9998 556665542 3444 689999998764
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.86 E-value=1.3e-08 Score=75.19 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=42.3
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .++.++. .+.++++|++|++++ .+..++...+ .++|++|+++++ .+. .++.. .+..+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ-SLALG--AFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC-EECTT--TTTTCTTC
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccC-ccChh--hhcCCccc
Confidence 36777777764 4555543 556667777777766 5555554322 246666666554 333 23321 34445555
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 103 ~~L~l~~ 109 (276)
T 2z62_A 103 QKLVAVE 109 (276)
T ss_dssp CEEECTT
T ss_pred cEEECCC
Confidence 5555544
No 43
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.86 E-value=2.1e-09 Score=90.08 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=83.7
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
.++|+.|+++++ .+..+|..+..+++|++|+|++ .+..+|.. +..++|+.|+++++ .+. .+|. .+..+++|+
T Consensus 223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~---~~~~l~~L~ 296 (727)
T 4b8c_D 223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLT-SLPA---ELGSCFQLK 296 (727)
T ss_dssp CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCS-SCCS---SGGGGTTCS
T ss_pred CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCC-ccCh---hhcCCCCCC
Confidence 357899999986 5778888888999999999999 88888754 23469999999885 576 7887 588899999
Q ss_pred EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++++ +.+..+|..+..+ ++|+.|++++++
T Consensus 297 ~L~L~~--N~l~~lp~~~~~l------~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFD--NMVTTLPWEFGNL------CNLQFLGVEGNP 327 (727)
T ss_dssp EEECCS--SCCCCCCSSTTSC------TTCCCEECTTSC
T ss_pred EEECCC--CCCCccChhhhcC------CCccEEeCCCCc
Confidence 999998 4677777666665 799999998875
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.85 E-value=3.1e-08 Score=76.64 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=41.0
Q ss_pred CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..++ ..+..+++|++|++++ .+..+++..+ .++|+.|+++++ .++ .+|.. .+..+++|
T Consensus 69 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~--~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS-SLPRG--IFHNTPKL 143 (390)
T ss_dssp CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred ccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccC-cCCHH--HhcCCCCC
Confidence 35555666554 344433 2455566666666665 5555544322 245666666553 444 45442 24556666
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 144 ~~L~L~~ 150 (390)
T 3o6n_A 144 TTLSMSN 150 (390)
T ss_dssp CEEECCS
T ss_pred cEEECCC
Confidence 6666665
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=6.5e-09 Score=79.03 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=36.3
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|+.|+++++ .+..++. +..+++|++|++++ .+..++.-...++|+.|++++| .+. .++ .+..+++|++|
T Consensus 199 ~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~-~~~----~~~~l~~L~~L 270 (347)
T 4fmz_A 199 TSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QIS-DIN----AVKDLTKLKML 270 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC-CCG----GGTTCTTCCEE
T ss_pred CccceeecccC-CCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccC-CCh----hHhcCCCcCEE
Confidence 35555555553 3333332 44555555555555 4544443223345555555553 333 332 24445555555
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 271 ~l~~ 274 (347)
T 4fmz_A 271 NVGS 274 (347)
T ss_dssp ECCS
T ss_pred EccC
Confidence 5555
No 46
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=1.4e-08 Score=77.11 Aligned_cols=75 Identities=23% Similarity=0.429 Sum_probs=44.2
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|++.++ .+..++ ++..+++|++|++++ .+..++.-...++|++|++++| .+. .++ .+..+++|++|
T Consensus 44 ~~L~~L~l~~~-~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~-~~~----~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KIT-DIS----ALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC-CCG----GGTTCTTCSEE
T ss_pred ccccEEEEeCC-ccccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-ccc-Cch----HHcCCCcCCEE
Confidence 35667777664 455554 355667777777776 5655554333356677777664 444 443 25566666666
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 116 ~l~~ 119 (347)
T 4fmz_A 116 YLNE 119 (347)
T ss_dssp ECTT
T ss_pred ECcC
Confidence 6665
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.85 E-value=5.9e-09 Score=80.66 Aligned_cols=103 Identities=15% Similarity=0.274 Sum_probs=77.6
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++++.|++.++ .++.+|.. +..+++|++|++++ .+..++...+ .++|++|+++++ .+. .++.. .+..+++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR-YLPPH--VFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCC-cCCHH--HhcCCCCC
Confidence 68999999995 68888876 47899999999999 8888876533 479999999986 565 55543 57899999
Q ss_pred CEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..+|..+ ..+ ++|++|+++++.
T Consensus 120 ~~L~L~~--n~l~~l~~~~~~~l------~~L~~L~L~~n~ 152 (390)
T 3o6n_A 120 TVLVLER--NDLSSLPRGIFHNT------PKLTTLSMSNNN 152 (390)
T ss_dssp CEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC
T ss_pred CEEECCC--CccCcCCHHHhcCC------CCCcEEECCCCc
Confidence 9999998 4565665432 333 577777776654
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.84 E-value=7.7e-09 Score=77.44 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=43.2
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCC-C--CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEE-D--GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~-~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..+|..+..+++|++|++++ .+..++. . ...++|+.|++++|. +....+. .+..+++|
T Consensus 78 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG---IFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT---TTTTCTTC
T ss_pred cccCEEECCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh---hcccCcCC
Confidence 45666666664 4555666666677777777776 5555543 1 122466666666542 3212222 34555666
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 153 ~~L~l~~ 159 (306)
T 2z66_A 153 EVLKMAG 159 (306)
T ss_dssp CEEECTT
T ss_pred CEEECCC
Confidence 6666655
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=4.6e-09 Score=72.16 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCCC-CCCCccEEEecCCCCchhhhhh-ccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEEDG-LPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~~-~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~L 79 (157)
++|++|++++| .+..+ ..+..+++|++|++++ .+.. +|... ..++|+.|++++| .++ .++. . .+..+++|
T Consensus 49 ~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~~--~l~~l~~L 122 (168)
T 2ell_A 49 VNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLK-DISTLE--PLKKLECL 122 (168)
T ss_dssp GGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCC-SSGGGG--GGSSCSCC
T ss_pred CCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccC-cchhHH--HHhcCCCC
Confidence 58999999997 47777 7788999999999999 8777 44322 2469999999986 666 5542 2 57889999
Q ss_pred CEEEEecCCCCCcccCc----ccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPP----ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~----~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..+|. .+..+ ++|+.|++.+|.
T Consensus 123 ~~L~l~~--N~l~~~~~~~~~~~~~l------~~L~~L~l~~n~ 158 (168)
T 2ell_A 123 KSLDLFN--CEVTNLNDYRESVFKLL------PQLTYLDGYDRE 158 (168)
T ss_dssp CEEECCS--SGGGTSTTHHHHHHTTC------SSCCEETTEETT
T ss_pred CEEEeeC--CcCcchHHHHHHHHHhC------ccCcEecCCCCC
Confidence 9999998 44555553 33444 689999998876
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=2e-08 Score=85.75 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=71.0
Q ss_pred CCcceEeeecCcCCcccCcccC-CCCcccEEEeeC-cccCCCCCCCC---------CCccEEEecCCCCchhhhhhcccc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLH-NLTSLQELKIGG-ELPSLEEDGLP---------TNLHSLWIDGNKKIWKSMIERGRG 72 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~-~l~~lp~~~~~---------~~L~~L~i~~c~~l~~~lp~~~~~ 72 (157)
++|+.|++++| .+..+|..+. .+++|+.|++++ .+..+|...+. ++|+.|++++| .+. .+|..
T Consensus 673 ~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~-~lp~~--- 746 (876)
T 4ecn_A 673 INASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT-SLSDD--- 746 (876)
T ss_dssp CCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC-CCCGG---
T ss_pred CCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCc-cchHH---
Confidence 46777777775 5566776554 778888888888 77777765432 17888888876 666 67763
Q ss_pred CC--CCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 73 FH--RFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 73 l~--~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+. .+++|+.|++++ +.+..+|..+..+ ++|+.|++++++
T Consensus 747 l~~~~l~~L~~L~Ls~--N~L~~lp~~l~~L------~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSY--NCFSSFPTQPLNS------SQLKAFGIRHQR 787 (876)
T ss_dssp GSTTTCTTCCEEECCS--SCCSSCCCGGGGC------TTCCEEECCCCB
T ss_pred hhhccCCCcCEEEeCC--CCCCccchhhhcC------CCCCEEECCCCC
Confidence 54 788888888887 4455566555554 577777776644
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.83 E-value=9.5e-09 Score=78.57 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=39.3
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCC--CCCCCccEEEecCCCCchhhhhh-ccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEED--GLPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~--~~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~ 78 (157)
++|++|+++++ .+..+ |..+.++++|++|++++ .+..++.. +..++|++|+++++ .++ .+|. . .+..+++
T Consensus 76 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~~--~~~~l~~ 150 (353)
T 2z80_A 76 VNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYK-TLGETS--LFSHLTK 150 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCS-SSCSSC--SCTTCTT
T ss_pred CCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCc-ccCchh--hhccCCC
Confidence 45666666664 34443 33455566666666665 55555442 12245555555543 333 3433 1 2444555
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|++|++++
T Consensus 151 L~~L~l~~ 158 (353)
T 2z80_A 151 LQILRVGN 158 (353)
T ss_dssp CCEEEEEE
T ss_pred CcEEECCC
Confidence 55555555
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.82 E-value=2.7e-08 Score=73.45 Aligned_cols=104 Identities=17% Similarity=0.293 Sum_probs=77.2
Q ss_pred CCCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|++++| .+..++. .+..+++|++|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLA-SLENF--PIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCC-CSTTC--CCTTCTT
T ss_pred ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-Ccc-ccCch--hcccCCC
Confidence 368999999986 5666654 678899999999998 7877775433 368999999875 554 55543 4778899
Q ss_pred cCEEEEecCCCCCcc--cCcccccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVS--FPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~--lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+.. +|..+..+ ++|++|++++|.
T Consensus 126 L~~L~l~~--n~l~~~~l~~~~~~l------~~L~~L~Ls~N~ 160 (276)
T 2z62_A 126 LKELNVAH--NLIQSFKLPEYFSNL------TNLEHLDLSSNK 160 (276)
T ss_dssp CCEEECCS--SCCCCCCCCGGGGGC------TTCCEEECCSSC
T ss_pred CCEEECcC--CccceecCchhhccC------CCCCEEECCCCC
Confidence 99999998 44544 45555555 789999998874
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=5.8e-09 Score=85.13 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=82.7
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
.+|+.|+++++ .++.+|. ++.+++|+.|++++ .+..+|.. +..++|+.|+++++ .++ .+| .++.+++|++
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~-~lp----~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALE-NVD----GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCC-CCG----GGTTCSSCCE
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCC-CCc----ccCCCCCCcE
Confidence 47899999995 7888987 89999999999999 88888764 23479999999885 676 677 3889999999
Q ss_pred EEEecCCCCCccc--CcccccCCCCCCCCCccEEeeeCCh
Q 040713 82 LTISGCDDDMVSF--PPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 82 L~i~~~c~~l~~l--p~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++++ +.+..+ |..+..+ ++|+.|++++++
T Consensus 513 L~Ls~--N~l~~~~~p~~l~~l------~~L~~L~L~~N~ 544 (567)
T 1dce_A 513 LLLCN--NRLQQSAAIQPLVSC------PRLVLLNLQGNS 544 (567)
T ss_dssp EECCS--SCCCSSSTTGGGGGC------TTCCEEECTTSG
T ss_pred EECCC--CCCCCCCCcHHHhcC------CCCCEEEecCCc
Confidence 99998 556666 6666666 799999999876
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=1.4e-08 Score=76.02 Aligned_cols=79 Identities=25% Similarity=0.278 Sum_probs=44.0
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC--CCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS--LEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~--lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++..-...+..+..+++|++|++++ .+.. +|.. ...++|+.|++++| .+. .++.. .+..+++|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L 201 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE-QLSPT--AFNSLSSL 201 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCC-EECTT--TTTTCTTC
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcC-CcCHH--HhcCCCCC
Confidence 5677777777533333444556677777777776 4443 3322 12356777777664 343 33221 35566666
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 202 ~~L~L~~ 208 (306)
T 2z66_A 202 QVLNMSH 208 (306)
T ss_dssp CEEECTT
T ss_pred CEEECCC
Confidence 6666666
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=1.9e-08 Score=77.39 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=35.1
Q ss_pred CcceEeeecCcCCcccCcc-cC-CCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 5 KLTRLEIYDCKRLEALPKG-LH-NLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~-~~-~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+++.|+++++ .+..++.. +. .+++|+.|++++ .+..++...+ .++|+.|+++++ .++ .++.. .+..+++|
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLH-TLDEF--LFSDLQAL 114 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-EECTT--TTTTCTTC
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCC-cCCHH--HhCCCcCC
Confidence 4555555553 44444332 22 455555555555 5544443322 235555555442 333 33332 34444445
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 115 ~~L~L~~ 121 (361)
T 2xot_A 115 EVLLLYN 121 (361)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 5555444
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=2.1e-08 Score=75.12 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=34.9
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|++++| .+..++. +..+++|+.|++++ .+..++.-...++|+.|++++| .+. .++ .+..+++|++|
T Consensus 68 ~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~i~-~~~----~l~~l~~L~~L 139 (291)
T 1h6t_A 68 PNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GIS-DIN----GLVHLPQLESL 139 (291)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS-CCC-CCG----GGGGCTTCCEE
T ss_pred CCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC-cCC-CCh----hhcCCCCCCEE
Confidence 34555555553 3444443 44555555555555 4444443233345555555543 333 232 23444555555
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 140 ~l~~ 143 (291)
T 1h6t_A 140 YLGN 143 (291)
T ss_dssp ECCS
T ss_pred EccC
Confidence 5554
No 57
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=2.1e-08 Score=75.07 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
.++|++|+++++ .++.++. +..+++|++|++++ .+..++.-...++|+.|++++| .+. .++ .+..+++|++
T Consensus 89 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n-~l~-~~~----~l~~l~~L~~ 160 (291)
T 1h6t_A 89 LKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KIT-DIT----VLSRLTKLDT 160 (291)
T ss_dssp CTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCC-CCG----GGGGCTTCSE
T ss_pred CCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCC-cCC-cch----hhccCCCCCE
Confidence 367888999885 5666654 77888889998888 7777654444568888888775 454 443 3667788888
Q ss_pred EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
|++++ | .+..++. +..+ ++|+.|++++|
T Consensus 161 L~L~~-N-~l~~~~~-l~~l------~~L~~L~L~~N 188 (291)
T 1h6t_A 161 LSLED-N-QISDIVP-LAGL------TKLQNLYLSKN 188 (291)
T ss_dssp EECCS-S-CCCCCGG-GTTC------TTCCEEECCSS
T ss_pred EEccC-C-ccccchh-hcCC------CccCEEECCCC
Confidence 88887 3 4554442 3333 56777777665
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.82 E-value=5.9e-09 Score=78.80 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCC
Q 040713 27 LTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKG 105 (157)
Q Consensus 27 l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~ 105 (157)
+++|++|++++ .+..++.....++|+.|++++| .+. .+|. .+..+++|++|++++ +.+..+|..+..+
T Consensus 168 l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~---~~~~l~~L~~L~L~~--N~l~~l~~~~~~l---- 236 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLA-FMGP---EFQSAAGVTWISLRN--NKLVLIEKALRFS---- 236 (317)
T ss_dssp TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCC-EECG---GGGGGTTCSEEECTT--SCCCEECTTCCCC----
T ss_pred cCcCCEEECCCCcCcccccccccccCCEEECCCC-cCC-cchh---hhcccCcccEEECcC--CcccchhhHhhcC----
Confidence 44444444444 4444433333445555555443 333 3433 244455555555555 2344444333332
Q ss_pred CCCCccEEeeeCCh
Q 040713 106 LPSSLLQLWIWGCP 119 (157)
Q Consensus 106 l~~~L~~L~i~~c~ 119 (157)
++|+.|++++++
T Consensus 237 --~~L~~L~l~~N~ 248 (317)
T 3o53_A 237 --QNLEHFDLRGNG 248 (317)
T ss_dssp --TTCCEEECTTCC
T ss_pred --CCCCEEEccCCC
Confidence 567777776654
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=3.8e-08 Score=80.42 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=64.4
Q ss_pred CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|+.|+++++ .+..++ ..+..+++|++|++++ .+..+++..+ .++|+.|++++| .+. .+|.. .+.++++|
T Consensus 75 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~--~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS-SLPRG--IFHNTPKL 149 (597)
T ss_dssp CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCC-CCCHH--HhccCCCC
Confidence 56777777775 455544 3667777788888877 7777665432 357788888765 555 56653 35677778
Q ss_pred CEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ | .+..++. .+..+ ++|+.|++++|.
T Consensus 150 ~~L~Ls~-N-~l~~~~~~~~~~l------~~L~~L~L~~N~ 182 (597)
T 3oja_B 150 TTLSMSN-N-NLERIEDDTFQAT------TSLQNLQLSSNR 182 (597)
T ss_dssp CEEECCS-S-CCCBCCTTTTTTC------TTCCEEECTTSC
T ss_pred CEEEeeC-C-cCCCCChhhhhcC------CcCcEEECcCCC
Confidence 8888877 3 3333322 23333 567777776653
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.81 E-value=2.9e-08 Score=78.60 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=36.4
Q ss_pred CcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 5 KLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
+++.|+++++ .+..+ +..+.++++|++|++++ .+..+++..+ .++|++|+++++ .++ .+|.. .+.++++|+
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK-LIPLG--VFTGLSNLT 107 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-SCCTT--SSTTCTTCC
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCC-ccCcc--cccCCCCCC
Confidence 5556666553 34443 23445555555555555 4444433222 235555555543 333 34332 344455555
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
+|++++
T Consensus 108 ~L~Ls~ 113 (477)
T 2id5_A 108 KLDISE 113 (477)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 555554
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.80 E-value=2e-08 Score=81.69 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=41.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|+++++ .++.+|.++..+++|++|++++ .+..+++.. ..++|+.|++++|.... .++.. .+..+++|+
T Consensus 278 ~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~--~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTG--CLENLENLR 353 (606)
T ss_dssp TTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSS--TTTTCTTCC
T ss_pred cCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchh--hhhccCcCC
Confidence 45666666664 4555666666666666666665 554443321 12455666665543222 33332 345555666
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
+|++++
T Consensus 354 ~L~l~~ 359 (606)
T 3t6q_A 354 ELDLSH 359 (606)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 666655
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.80 E-value=3.2e-08 Score=78.40 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=59.8
Q ss_pred CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|+++++ .+..+ |..+.++++|++|++++ .+..+|...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 55 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~-~~~~~--~~~~l~~ 129 (477)
T 2id5_A 55 FPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIV-ILLDY--MFQDLYN 129 (477)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCC-EECTT--TTTTCTT
T ss_pred CCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccc-cCChh--Hcccccc
Confidence 368999999986 55555 67788999999999998 8888887543 368999999875 444 33332 5777888
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|++|++++
T Consensus 130 L~~L~l~~ 137 (477)
T 2id5_A 130 LKSLEVGD 137 (477)
T ss_dssp CCEEEECC
T ss_pred CCEEECCC
Confidence 88888887
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.79 E-value=1.5e-08 Score=81.39 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .++.+ |..+.++++|++|++++ .+..+++..+ .++|++|++++| .+. .++.. .++++++|
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS-SLSSS--WFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC-SCCHH--HHTTCTTC
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC-ccCHH--HhccCCCC
Confidence 47899999886 45555 56778889999999998 7777765433 368888888875 454 44432 47788888
Q ss_pred CEEEEecCCCCCcc--cCcccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVS--FPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~--lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ | .+.. +|..+..+ ++|++|++++|.
T Consensus 101 ~~L~Ls~-n-~l~~~~~~~~~~~l------~~L~~L~L~~n~ 134 (549)
T 2z81_A 101 KYLNLMG-N-PYQTLGVTSLFPNL------TNLQTLRIGNVE 134 (549)
T ss_dssp CEEECTT-C-CCSSSCSSCSCTTC------TTCCEEEEEESS
T ss_pred cEEECCC-C-cccccchhhhhhcc------CCccEEECCCCc
Confidence 8888887 4 3432 22223333 566666666654
No 64
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.79 E-value=1.2e-08 Score=85.59 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=22.4
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP 40 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~ 40 (157)
.++|++|++++|.....+|..+.++++|++|++++ .+.
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 34667777766543335566666666666666665 443
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.79 E-value=1.4e-08 Score=82.61 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 73 FHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 73 l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+..+++|++|++++ +.+..+|..+..+ +.+|+.|++.+++
T Consensus 517 ~~~l~~L~~L~l~~--N~l~~~p~~~~~l-----~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 517 YNQLYSLSTLDCSF--NRIETSKGILQHF-----PKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECTT--SCCCCEESCGGGS-----CTTCCEEECCSCC
T ss_pred ccCCCcCCEEECCC--CcCcccCHhHhhh-----cccCcEEEccCCC
Confidence 44555555555554 2244444433333 2468888887754
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.79 E-value=3.2e-08 Score=80.49 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=35.3
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhh-hhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSM-IERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~l-p~~~~~l~~l~~ 78 (157)
+++++|+++++ .+..++. .+.++++|++|++++ .+..+++..+ .++|++|++++| .+. .+ |. .++++++
T Consensus 32 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~-~~~p~---~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQ-SFSPG---SFSGLTS 105 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC-CCCTT---SSTTCTT
T ss_pred CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccc-ccChh---hcCCccc
Confidence 35555555553 3333332 445555555555555 4444433322 235555555543 233 22 22 3444455
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|++|++++
T Consensus 106 L~~L~L~~ 113 (606)
T 3vq2_A 106 LENLVAVE 113 (606)
T ss_dssp CCEEECTT
T ss_pred CCEEEccC
Confidence 55555544
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.79 E-value=1.9e-08 Score=82.91 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=62.9
Q ss_pred CCcceEeeecCcCCcccCccc-CCCCcccEEEeeC-cccCCCCCCCC--C-------CccEEEecCCCCchhhhhhcccc
Q 040713 4 AKLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDGLP--T-------NLHSLWIDGNKKIWKSMIERGRG 72 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~-~l~~lp~~~~~--~-------~L~~L~i~~c~~l~~~lp~~~~~ 72 (157)
++|++|++++| .+..+|..+ ..+++|+.|++++ .+..+|...+. . +|+.|++++| .+. .+|..
T Consensus 433 ~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~~--- 506 (636)
T 4eco_A 433 INVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT-KLSDD--- 506 (636)
T ss_dssp CCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC-BCCGG---
T ss_pred CCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCC-ccChh---
Confidence 35666666664 455566544 3467777777777 66666654332 1 6778888764 555 66653
Q ss_pred CC--CCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 73 FH--RFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 73 l~--~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+. .+++|++|++++ +.+..+|..+..+ ++|+.|+++++.
T Consensus 507 ~~~~~l~~L~~L~Ls~--N~l~~ip~~~~~l------~~L~~L~Ls~N~ 547 (636)
T 4eco_A 507 FRATTLPYLVGIDLSY--NSFSKFPTQPLNS------STLKGFGIRNQR 547 (636)
T ss_dssp GSTTTCTTCCEEECCS--SCCSSCCCGGGGC------SSCCEEECCSCB
T ss_pred hhhccCCCcCEEECCC--CCCCCcChhhhcC------CCCCEEECCCCc
Confidence 54 778888888887 3455566555444 567777775543
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.79 E-value=4.6e-08 Score=78.55 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=50.5
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|++++| .++.+|..+..+++|++|++++ .+..+|.. .+++|+.|++++| .++ .+ ...+++|++|
T Consensus 387 ~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N-~l~-~~------~~~l~~L~~L 456 (549)
T 2z81_A 387 KNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNN-NLD-SF------SLFLPRLQEL 456 (549)
T ss_dssp TTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-SCTTCSEEECCSS-CCS-CC------CCCCTTCCEE
T ss_pred CCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccch-hcCCceEEECCCC-Chh-hh------cccCChhcEE
Confidence 35555555554 4445555555555666666655 55544432 2345555555554 333 22 2356677777
Q ss_pred EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
++++ +.+..+|. .+..++|+.|++++|
T Consensus 457 ~Ls~--N~l~~ip~-------~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 457 YISR--NKLKTLPD-------ASLFPVLLVMKISRN 483 (549)
T ss_dssp ECCS--SCCSSCCC-------GGGCTTCCEEECCSS
T ss_pred ECCC--CccCcCCC-------cccCccCCEEecCCC
Confidence 7776 34444543 222356666666655
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.78 E-value=1.8e-08 Score=81.77 Aligned_cols=105 Identities=25% Similarity=0.289 Sum_probs=76.4
Q ss_pred CCcceEeeecCcCCcc-cCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEA-LPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|+.|+++++..... .|..+..+++|+.|++++ .+..+++..+ .++|+.|+++++ ++. .++.. .+.++++|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~-~l~~~--~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFF-SLDTF--PYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC-BCCCG--GGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCC-CCChh--HHhCCCCC
Confidence 5788888887654443 566778899999999998 8888876544 368999999885 666 66554 57888999
Q ss_pred CEEEEecCCCCCcccC-cccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFP-PELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp-~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..++ ..+..+ +++|+.|+++++|
T Consensus 545 ~~L~Ls~--N~l~~~~~~~l~~l-----~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSL--NHIMTSKKQELQHF-----PSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTT--SCCCBCCSSCTTCC-----CTTCCEEECTTCC
T ss_pred CEEECCC--CcCCCCCHHHHHhh-----hCcCCEEEeeCCC
Confidence 9999998 4444443 233333 3689999998754
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.78 E-value=3.6e-08 Score=81.02 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=39.5
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|+.|++++| .+..++. +..+++|+.|++++ .+..++.-...++|+.|++++| .+. .++ .+..+++|+.|
T Consensus 65 ~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~-~l~----~l~~l~~L~~L 136 (605)
T 1m9s_A 65 PNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN-GIS-DIN----GLVHLPQLESL 136 (605)
T ss_dssp TTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS-CCC-CCG----GGGGCTTCSEE
T ss_pred CCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC-CCC-CCc----cccCCCccCEE
Confidence 46677777664 4555544 55666666666666 5555543333345556655553 333 332 23444555555
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 137 ~Ls~ 140 (605)
T 1m9s_A 137 YLGN 140 (605)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5544
No 71
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.78 E-value=1.3e-08 Score=85.38 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|++|++++|.....+|..+..+++|+.|++++ .+.. +|.. +..++|+.|++++|. +...+|. .+.++++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~---~l~~l~~L~ 493 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPS---GLSNCTNLN 493 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCG---GGGGCTTCC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-ccCcCCH---HHhcCCCCC
Confidence 4677777777643345667777777777777777 5553 3322 123577777777753 3325555 366777777
Q ss_pred EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
+|++++ |.....+|.++..+ ++|+.|++++|.... .....+..+.++..+.+.+.
T Consensus 494 ~L~L~~-N~l~~~~p~~~~~l------~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 494 WISLSN-NRLTGEIPKWIGRL------ENLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EEECCS-SCCCSCCCGGGGGC------TTCCEEECCSSCCEE-----ECCGGGGGCTTCCEEECCSS
T ss_pred EEEccC-CccCCcCChHHhcC------CCCCEEECCCCcccC-----cCCHHHcCCCCCCEEECCCC
Confidence 777777 55444666666655 678888887775321 11223455666777777654
No 72
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.78 E-value=5.7e-09 Score=72.41 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=80.8
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
++|+.|+++++ .+..+ ..+..+++|++|++++ .+..+|... ..++|+.|+++++ .+. .+|.. ..+..+++|+
T Consensus 42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~-~~~~~-~~l~~l~~L~ 116 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLV-ELGDL-DPLASLKSLT 116 (176)
T ss_dssp TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCC-CGGGG-GGGGGCTTCC
T ss_pred CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCC-cchhh-HhhhcCCCCC
Confidence 48999999996 67777 6788999999999999 888887643 2469999999986 565 66641 0367899999
Q ss_pred EEEEecCCCCCcccCcc----cccCCCCCCCCCccEEeeeCChh
Q 040713 81 HLTISGCDDDMVSFPPE----LKYFPEKGLPSSLLQLWIWGCPL 120 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~----l~~lp~~~l~~~L~~L~i~~c~~ 120 (157)
+|++++ +.+..+|.. +..+ ++|+.|++.++..
T Consensus 117 ~L~l~~--N~i~~~~~~~~~~~~~l------~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 117 YLCILR--NPVTNKKHYRLYVIYKV------PQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCS--SGGGGSTTHHHHHHHHC------TTCSEETTEECCH
T ss_pred EEEecC--CCCCCcHhHHHHHHHHC------CccceeCCCcCCH
Confidence 999998 445566643 4444 6899999988864
No 73
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.77 E-value=2.2e-08 Score=78.64 Aligned_cols=103 Identities=20% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhh-hhccccCCCCC
Q 040713 3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSM-IERGRGFHRFS 77 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~l-p~~~~~l~~l~ 77 (157)
.++|++|++++| .+..+ |..+..+++|++|++++ .+..++... ..++|+.|++++| .+. .+ |. .+..++
T Consensus 298 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~---~~~~l~ 371 (455)
T 3v47_A 298 FTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIR-ALGDQ---SFLGLP 371 (455)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCC-EECTT---TTTTCT
T ss_pred CCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-ccc-ccChh---hccccc
Confidence 368999999997 45554 66888999999999999 887776543 2479999999986 555 44 44 588999
Q ss_pred ccCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 78 SLRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 78 ~L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++|++++ +.+..+|.. +..+ ++|+.|++++++
T Consensus 372 ~L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~ 406 (455)
T 3v47_A 372 NLKELALDT--NQLKSVPDGIFDRL------TSLQKIWLHTNP 406 (455)
T ss_dssp TCCEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSSC
T ss_pred cccEEECCC--CccccCCHhHhccC------CcccEEEccCCC
Confidence 999999998 456555542 2333 799999998764
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.77 E-value=4.8e-08 Score=75.14 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=74.4
Q ss_pred CCCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|+++++ .+..++. .+..+++|+.|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++
T Consensus 63 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~-~~~~~--~~~~l~~ 137 (361)
T 2xot_A 63 LTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIV-VVDRN--AFEDMAQ 137 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-EECTT--TTTTCTT
T ss_pred ccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-ccc-EECHH--HhCCccc
Confidence 468888999885 6666664 577888999999998 8887776543 368899999875 555 45433 5778889
Q ss_pred cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ +.+..+|..+- ....-.++|+.|+++++.
T Consensus 138 L~~L~L~~--N~l~~l~~~~~--~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 138 LQKLYLSQ--NQISRFPVELI--KDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCEEECCS--SCCCSCCGGGT--C----CTTCCEEECCSSC
T ss_pred CCEEECCC--CcCCeeCHHHh--cCcccCCcCCEEECCCCC
Confidence 99999987 55665654320 000113688888888754
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.75 E-value=2.7e-08 Score=76.16 Aligned_cols=86 Identities=19% Similarity=0.379 Sum_probs=62.3
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cc-cCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-EL-PSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l-~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
+++++|+++++ .++.+|. .+.++++|++|++++ .+ ..++.+.+. +++..+.+.+++++. .++.. .+..+++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~--~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE--AFQNLPN 105 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTT--SBCCCTT
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCch--hhhhccc
Confidence 58999999994 7888886 468999999999998 65 445554432 466665555667776 66554 5788888
Q ss_pred cCEEEEecCCCCCcccC
Q 040713 79 LRHLTISGCDDDMVSFP 95 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp 95 (157)
|++|++++ +.+..+|
T Consensus 106 L~~L~l~~--n~l~~~~ 120 (350)
T 4ay9_X 106 LQYLLISN--TGIKHLP 120 (350)
T ss_dssp CCEEEEEE--ECCSSCC
T ss_pred cccccccc--cccccCC
Confidence 88888887 4454444
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.75 E-value=8e-08 Score=72.79 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=50.0
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
++|++|++++| .+..+ |..+..+++|++|++++ .+..+|...+ ++|+.|+++++ .+. .++.. .+..+++|++
T Consensus 78 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n-~i~-~~~~~--~~~~l~~L~~ 151 (332)
T 2ft3_A 78 QHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDN-RIR-KVPKG--VFSGLRNMNC 151 (332)
T ss_dssp TTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSS-CCC-CCCSG--GGSSCSSCCE
T ss_pred CCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCC-ccC-ccCHh--HhCCCccCCE
Confidence 45666666664 34443 55666777777777777 6666665444 57777777764 454 45543 4677888888
Q ss_pred EEEec
Q 040713 82 LTISG 86 (157)
Q Consensus 82 L~i~~ 86 (157)
|++++
T Consensus 152 L~l~~ 156 (332)
T 2ft3_A 152 IEMGG 156 (332)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 88877
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.74 E-value=9.5e-08 Score=72.25 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=48.1
Q ss_pred CCcceEeeecCcCCc---ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLE---ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|+.|+++++. +. ..+..+..+++|+.|++++ .+..+|.... ++|+.|+++++ .+. .++.. .+..+++|
T Consensus 145 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L 218 (330)
T 1xku_A 145 NQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGN-KIT-KVDAA--SLKGLNNL 218 (330)
T ss_dssp TTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTS-CCC-EECTG--GGTTCTTC
T ss_pred ccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCCC-cCC-ccCHH--HhcCCCCC
Confidence 456666665542 22 2344556777778888777 7777765433 57888888775 444 33222 46677778
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 219 ~~L~Ls~ 225 (330)
T 1xku_A 219 AKLGLSF 225 (330)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 8888776
No 78
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=9.2e-09 Score=69.25 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=74.1
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCCC-CCCCccEEEecCCCCchhhhh--hccccCCCCC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEEDG-LPTNLHSLWIDGNKKIWKSMI--ERGRGFHRFS 77 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~~-~~~~L~~L~i~~c~~l~~~lp--~~~~~l~~l~ 77 (157)
.++|+.|++++| .+..+ ..+..+++|++|++++ .+.. +|... ..++|+.|++++| .++ .++ . .+..++
T Consensus 41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~-~~~~~~---~~~~l~ 113 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIK-DLSTIE---PLKKLE 113 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCC-SHHHHG---GGGGCT
T ss_pred cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCC-ChHHHH---HHhhCC
Confidence 368999999996 67777 6788999999999999 8777 44321 2469999999986 565 544 4 578899
Q ss_pred ccCEEEEecCCCCCcccCc----ccccCCCCCCCCCccEEeee
Q 040713 78 SLRHLTISGCDDDMVSFPP----ELKYFPEKGLPSSLLQLWIW 116 (157)
Q Consensus 78 ~L~~L~i~~~c~~l~~lp~----~l~~lp~~~l~~~L~~L~i~ 116 (157)
+|++|++++ | .+..+|. .+..+ ++|+.|+++
T Consensus 114 ~L~~L~l~~-N-~l~~~~~~~~~~~~~l------~~L~~L~l~ 148 (149)
T 2je0_A 114 NLKSLDLFN-C-EVTNLNDYRENVFKLL------PQLTYLDGY 148 (149)
T ss_dssp TCCEEECTT-C-GGGGSTTHHHHHHHHC------TTCCEETTB
T ss_pred CCCEEeCcC-C-cccchHHHHHHHHHHC------CCcccccCC
Confidence 999999998 4 4555543 23444 688888765
No 79
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.73 E-value=1.3e-08 Score=76.95 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=44.7
Q ss_pred CCcceEeeecCcCCc-ccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLE-ALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|++++++.+. .+|..+.++++|++|++++ .+. .+|.. +..++|++|+++++ .+...+|. .+..+++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~---~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPP---SISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCG---GGGGCTTC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCCh---HHhcCCCC
Confidence 355555555322332 4555555555666666655 444 23321 12246666666654 33223444 35566666
Q ss_pred CEEEEecCCCCCcccCccccc
Q 040713 80 RHLTISGCDDDMVSFPPELKY 100 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l~~ 100 (157)
++|++++ +.-...+|..+..
T Consensus 152 ~~L~L~~-N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 152 VGITFDG-NRISGAIPDSYGS 171 (313)
T ss_dssp CEEECCS-SCCEEECCGGGGC
T ss_pred CeEECcC-CcccCcCCHHHhh
Confidence 6666666 3322244443333
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=3.6e-08 Score=78.87 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=56.6
Q ss_pred CCcceEeeecCcCCc---ccCcccCCCCcccEEEeeC-cccC-CCCCC--CCCCccEEEecCCCCchhhhhhccccCCCC
Q 040713 4 AKLTRLEIYDCKRLE---ALPKGLHNLTSLQELKIGG-ELPS-LEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRF 76 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~-~l~~-lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l 76 (157)
++|++|++++| .+. .+|..+..+++|++|++++ .+.. +|... ..++|+.|++++|. +...+|.. +.
T Consensus 348 ~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---l~-- 420 (520)
T 2z7x_B 348 TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRC---LP-- 420 (520)
T ss_dssp SSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGS---CC--
T ss_pred CCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhh---hc--
Confidence 57888888875 444 3455667788888888887 6665 65432 23567777776653 32234431 21
Q ss_pred CccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713 77 SSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 77 ~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
++|++|++++ +.+..+|..+..+ ++|++|++++|
T Consensus 421 ~~L~~L~Ls~--N~l~~ip~~~~~l------~~L~~L~L~~N 454 (520)
T 2z7x_B 421 PRIKVLDLHS--NKIKSIPKQVVKL------EALQELNVASN 454 (520)
T ss_dssp TTCCEEECCS--SCCCCCCGGGGGC------TTCCEEECCSS
T ss_pred ccCCEEECCC--CcccccchhhhcC------CCCCEEECCCC
Confidence 4666666665 3444555433333 34555555444
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.73 E-value=5.2e-08 Score=78.46 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=26.7
Q ss_pred CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCC
Q 040713 5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGN 59 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c 59 (157)
+++.|+++++ .++.++ ..+.++++|++|++++ .+..++...+ .++|++|+++++
T Consensus 29 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp SCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 5566666553 344433 2445555555665555 4544443322 245555555543
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=8.4e-08 Score=76.70 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=52.2
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCC----CCCCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEE----DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~----~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
++|++|++++|.--..+|..+..+++|++|++++ .+..++. -+..++|+.|++++| .+...+|.. .+..+++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~--~~~~l~~ 400 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG--DCSWTKS 400 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC--SCCCCTT
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccc--hhccCcc
Confidence 3555555555432222455555666666666665 4443221 122245666666554 333125543 3455566
Q ss_pred cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
|++|++++ |.-...+|. .++++|+.|++++|.
T Consensus 401 L~~L~Ls~-N~l~~~~~~--------~l~~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 401 LLSLNMSS-NILTDTIFR--------CLPPRIKVLDLHSNK 432 (520)
T ss_dssp CCEEECCS-SCCCGGGGG--------SCCTTCCEEECCSSC
T ss_pred CCEEECcC-CCCCcchhh--------hhcccCCEEECCCCc
Confidence 66666665 332222221 122678888888764
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=1.6e-08 Score=80.93 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=18.3
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccC
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPS 41 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~ 41 (157)
++|+.|++++| .+..+ |..++.+++|+.|++++ .+..
T Consensus 120 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp SSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 35566666554 23332 33444555555555555 4443
No 84
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.72 E-value=9.3e-08 Score=67.25 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=84.9
Q ss_pred ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC---CCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG---LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~---~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
+.+++++ ..++.+|..+. .+|++|++++ .+..++..+ ..++|+.|+++++ .++ .++.. .+.++++|++|
T Consensus 11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLT-GIEPN--AFEGASHIQEL 83 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCC-CBCTT--TTTTCTTCCEE
T ss_pred CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCC-CcCHh--HcCCcccCCEE
Confidence 5678887 47888997664 3899999999 888888643 3479999999885 666 45332 58899999999
Q ss_pred EEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 83 TISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
++++ +.+..++.. +..+ ++|++|+++++.- .. .....+..+.++..+.+.+.
T Consensus 84 ~Ls~--N~l~~~~~~~~~~l------~~L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 84 QLGE--NKIKEISNKMFLGL------HQLKTLNLYDNQI-SC----VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCS--CCCCEECSSSSTTC------TTCCEEECCSSCC-CE----ECTTSSTTCTTCCEEECTTC
T ss_pred ECCC--CcCCccCHHHhcCC------CCCCEEECCCCcC-Ce----eCHHHhhcCCCCCEEEeCCC
Confidence 9998 556555432 3333 7999999988752 11 11223455666777776653
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.71 E-value=8.5e-08 Score=77.97 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+++++|+++++ .++.+ |..+.++++|++|++++ .+..+.+..+ .++|++|++++| .+....|. .+.++++|
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAET---ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTT---TTSSCTTC
T ss_pred CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChh---hhcccccc
Confidence 46777888775 45555 45667778888888877 6666544432 357777777765 34312233 46667777
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 108 ~~L~L~~ 114 (606)
T 3t6q_A 108 KHLFFIQ 114 (606)
T ss_dssp CEEECTT
T ss_pred cEeeccc
Confidence 7777776
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=6e-08 Score=73.08 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=28.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG 58 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~ 58 (157)
++|++|+++++ .+..++ .+..+++|+.|++++ .+..++.-...++|+.|++++
T Consensus 85 ~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 85 TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 46666666664 344443 355566666666665 555444322334555555544
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.70 E-value=3.5e-08 Score=81.30 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred CCCcceEeeecCcCCcc------------------cCcccC--CCCcccEEEeeC-cc-cCCCCC-CCCCCccEEEecCC
Q 040713 3 CAKLTRLEIYDCKRLEA------------------LPKGLH--NLTSLQELKIGG-EL-PSLEED-GLPTNLHSLWIDGN 59 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~------------------lp~~~~--~l~~L~~L~l~~-~l-~~lp~~-~~~~~L~~L~i~~c 59 (157)
.++|++|+++++. +.. +|..++ ++++|++|++++ .+ ..+|.. +..++|+.|++++|
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 3689999999974 666 999998 999999999998 54 455543 23469999999987
Q ss_pred CCchh-hhhhccccCCCC------CccCEEEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713 60 KKIWK-SMIERGRGFHRF------SSLRHLTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 60 ~~l~~-~lp~~~~~l~~l------~~L~~L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
..+.. .+|. .++.+ ++|++|++++ | .+..+|. .+..+ ++|+.|++++|.
T Consensus 284 ~~l~~~~lp~---~~~~L~~~~~l~~L~~L~L~~-n-~l~~ip~~~~l~~l------~~L~~L~L~~N~ 341 (636)
T 4eco_A 284 RGISGEQLKD---DWQALADAPVGEKIQIIYIGY-N-NLKTFPVETSLQKM------KKLGMLECLYNQ 341 (636)
T ss_dssp TTSCHHHHHH---HHHHHHHSGGGGTCCEEECCS-S-CCSSCCCHHHHTTC------TTCCEEECCSCC
T ss_pred CCCccccchH---HHHhhhccccCCCCCEEECCC-C-cCCccCchhhhccC------CCCCEEeCcCCc
Confidence 54664 5776 35554 8899999988 4 4556765 45554 566666666553
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.69 E-value=9.3e-08 Score=72.30 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=40.5
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
++|++|+++++ .+..+ |..+..+++|++|++++ .+..+|...+ ++|+.|+++++ .+. .++.. .+..+++|++
T Consensus 76 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHEN-EIT-KVRKS--VFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSS-CCC-BBCHH--HHTTCTTCCE
T ss_pred CCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCC-ccc-ccCHh--HhcCCccccE
Confidence 34555555553 33333 44555556666666655 5555554332 46666666553 333 33322 3556667777
Q ss_pred EEEec
Q 040713 82 LTISG 86 (157)
Q Consensus 82 L~i~~ 86 (157)
|++++
T Consensus 150 L~l~~ 154 (330)
T 1xku_A 150 VELGT 154 (330)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 77766
No 89
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=2.6e-07 Score=63.83 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=85.2
Q ss_pred cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
.+.+++.+ ..++.+|..+ .++|+.|++++ .+..++...+ .++|+.|+++++ .+. .++.. .+..+++|++|
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQ-SLPDG--VFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTT--TTTTCTTCCEE
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cce-EeChh--HccCCCccCEE
Confidence 35677776 4678888654 47999999999 8888887543 479999999885 676 66654 56889999999
Q ss_pred EEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 83 TISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
++++ +.+..+|.. +..+ ++|+.|+++++. +.. .....+..+.++..+.+.+.
T Consensus 82 ~l~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~-l~~----~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 82 YLHE--NKLQSLPNGVFDKL------TQLKELALDTNQ-LKS----VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSS
T ss_pred ECCC--CCccccCHHHhhCC------cccCEEECcCCc-ceE----eCHHHhcCCcccCEEEecCC
Confidence 9998 445555432 2333 799999998874 221 11222455667777777654
No 90
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.69 E-value=6.7e-08 Score=77.80 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=17.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG 37 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 37 (157)
++|++|++++| .+..++..+..+++|++|++++
T Consensus 373 ~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 373 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH 405 (570)
T ss_dssp SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTT
T ss_pred CccCEEECCCC-ccccccccccccCCCCEEEccC
Confidence 45666666654 3444444444555555555555
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.69 E-value=1.4e-07 Score=76.42 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..++ ..+.++++|++|++++ .+..++++.+ .++|++|+++++ .++ .+|. . .+++|
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~---~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQ-NISC---C--PMASL 123 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCC-EECS---C--CCTTC
T ss_pred CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCC-ccCc---c--ccccC
Confidence 58888888886 466655 5778888899999988 7777765543 368889999875 566 6775 2 68888
Q ss_pred CEEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCCh
Q 040713 80 RHLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|++++ +.+..+| ..+..+ ++|++|+++++.
T Consensus 124 ~~L~Ls~--N~l~~l~~p~~~~~l------~~L~~L~L~~n~ 157 (562)
T 3a79_B 124 RHLDLSF--NDFDVLPVCKEFGNL------TKLTFLGLSAAK 157 (562)
T ss_dssp SEEECCS--SCCSBCCCCGGGGGC------TTCCEEEEECSB
T ss_pred CEEECCC--CCccccCchHhhccc------CcccEEecCCCc
Confidence 9999888 4455443 344444 688999888754
No 92
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.69 E-value=3e-08 Score=74.86 Aligned_cols=90 Identities=26% Similarity=0.345 Sum_probs=62.6
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCC-cc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFS-SL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~-~L 79 (157)
++|++|+++++.--..+|..+.++++|++|++++ .+. .+|.. +..++|++|+++++ .+...+|. .+..++ +|
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~---~l~~l~~~L 176 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPD---SYGSFSKLF 176 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCG---GGGCCCTTC
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCH---HHhhhhhcC
Confidence 6899999998643347888888999999999998 666 34432 23468999999886 44335666 467777 88
Q ss_pred CEEEEecCCCCCcccCccc
Q 040713 80 RHLTISGCDDDMVSFPPEL 98 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l 98 (157)
++|++++ +.....+|..+
T Consensus 177 ~~L~L~~-N~l~~~~~~~~ 194 (313)
T 1ogq_A 177 TSMTISR-NRLTGKIPPTF 194 (313)
T ss_dssp CEEECCS-SEEEEECCGGG
T ss_pred cEEECcC-CeeeccCChHH
Confidence 8888887 43322445433
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.69 E-value=3.3e-08 Score=74.65 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=60.8
Q ss_pred CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC---CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL---PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~---~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+|++|+++++ .+..++ ..+..+++|++|++++ .+..++...+ .++|+.|++++| .++ .++. ...+++|
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~----~~~l~~L 193 (317)
T 3o53_A 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIY-DVKG----QVVFAKL 193 (317)
T ss_dssp SCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCC-EEEC----CCCCTTC
T ss_pred CCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCc-cccc----ccccccC
Confidence 3444444443 233332 2344555666666665 4444432221 245666666554 343 3432 2346666
Q ss_pred CEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 80 RHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
++|++++ +.+..+|..+..+ ++|+.|++++|. +... ...+..+.++..+.+.+.
T Consensus 194 ~~L~Ls~--N~l~~l~~~~~~l------~~L~~L~L~~N~-l~~l-----~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 194 KTLDLSS--NKLAFMGPEFQSA------AGVTWISLRNNK-LVLI-----EKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CEEECCS--SCCCEECGGGGGG------TTCSEEECTTSC-CCEE-----CTTCCCCTTCCEEECTTC
T ss_pred CEEECCC--CcCCcchhhhccc------CcccEEECcCCc-ccch-----hhHhhcCCCCCEEEccCC
Confidence 6666666 3455554444433 577888887764 2211 122444556666666553
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.69 E-value=7.1e-08 Score=79.31 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=58.7
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|+.|++++| .+..+| .+..+++|+.|++++ .+..++.-...++|+.|++++| .+. .++ .+..+++|+.|
T Consensus 87 ~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~-~l~----~l~~l~~L~~L 158 (605)
T 1m9s_A 87 KNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KIT-DIT----VLSRLTKLDTL 158 (605)
T ss_dssp TTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS-CCC-CCG----GGGSCTTCSEE
T ss_pred CCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC-ccC-Cch----hhcccCCCCEE
Confidence 45555555554 344443 455555566666655 5544443333345666666553 333 332 24455556666
Q ss_pred EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECceee
Q 040713 83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWD 149 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~~~ 149 (157)
++++ | .+..++. +..+ ++|+.|++++|. +.. ...+..+.++..+.+.+...
T Consensus 159 ~Ls~-N-~l~~~~~-l~~l------~~L~~L~Ls~N~-i~~------l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 159 SLED-N-QISDIVP-LAGL------TKLQNLYLSKNH-ISD------LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCS-S-CCCCCGG-GTTC------TTCCEEECCSSC-CCB------CGGGTTCTTCSEEECCSEEE
T ss_pred ECcC-C-cCCCchh-hccC------CCCCEEECcCCC-CCC------ChHHccCCCCCEEEccCCcC
Confidence 6655 2 2333322 2222 456666665553 110 11234455666666665433
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.69 E-value=7e-08 Score=78.10 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=32.3
Q ss_pred CCcceEeeecCcCCcccC---cccCCCCcccEEEeeC-cccC-CCCCCC--CCCccEEEecCC
Q 040713 4 AKLTRLEIYDCKRLEALP---KGLHNLTSLQELKIGG-ELPS-LEEDGL--PTNLHSLWIDGN 59 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp---~~~~~l~~L~~L~l~~-~l~~-lp~~~~--~~~L~~L~i~~c 59 (157)
++|++|+++++ .++.++ ..+..+++|+.|++++ .+.. +|...+ .++|+.|++++|
T Consensus 377 ~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 377 KRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp SSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred CCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 57777888775 455433 4566777777777777 6655 554321 234555555443
No 96
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.67 E-value=7.8e-08 Score=66.78 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=65.9
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..+ |..+..+++|++|++++ .+..+|...+ .++|+.|+++++ .++ .+|.. .+..+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~-~l~~~--~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK-SIPRG--AFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccc-eeCHH--HhccccCC
Confidence 68999999995 67776 56778999999999999 9999988643 479999999884 776 77764 58889999
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 108 ~~L~L~~ 114 (174)
T 2r9u_A 108 THIYLYN 114 (174)
T ss_dssp SEEECCS
T ss_pred CEEEeCC
Confidence 9999998
No 97
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.66 E-value=2.4e-07 Score=65.31 Aligned_cols=120 Identities=22% Similarity=0.342 Sum_probs=83.6
Q ss_pred ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEE
Q 040713 7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTI 84 (157)
Q Consensus 7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i 84 (157)
+.+++++ ..++.+|..+ .++|+.|++++ .+..+|.. ...++|+.|+++++ .+. .++.. .+.++++|++|++
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~-~i~~~--~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RIS-TLSNQ--SFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCC-CCCTT--TTTTCTTCCEEEC
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCC-EeCHh--HccCCCCCCEEEC
Confidence 4566766 4688888765 46899999999 88888742 22369999999885 666 66654 6889999999999
Q ss_pred ecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713 85 SGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN 146 (157)
Q Consensus 85 ~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~ 146 (157)
++ +.+..+|. .+..+ ++|+.|+++++. +. ......+..+.++..+.+.+
T Consensus 86 s~--N~l~~i~~~~f~~l------~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 86 SY--NRLRCIPPRTFDGL------KSLRLLSLHGND-IS----VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CS--SCCCBCCTTTTTTC------TTCCEEECCSSC-CC----BCCTTTTTTCTTCCEEECCS
T ss_pred CC--CccCEeCHHHhCCC------CCCCEEECCCCC-CC----eeChhhhhcCccccEEEeCC
Confidence 98 55655543 23333 799999998865 21 11222345566677777665
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.65 E-value=7.2e-08 Score=73.06 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=57.5
Q ss_pred CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
+|++|+++++ .+..++ ..+..+++|++|++++ .+..++... ..++|+.|++++| .+. .+|. .+..+++|+
T Consensus 194 ~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~---~l~~l~~L~ 267 (332)
T 2ft3_A 194 TLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS-RVPA---GLPDLKLLQ 267 (332)
T ss_dssp SCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCC-BCCT---TGGGCTTCC
T ss_pred CCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCe-ecCh---hhhcCccCC
Confidence 5666666654 333333 4556666677777766 666555432 2356777777664 454 5665 356667777
Q ss_pred EEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713 81 HLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+|++++ +.+..+|.. +..........+|+.+++.+++
T Consensus 268 ~L~l~~--N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 268 VVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp EEECCS--SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred EEECCC--CCCCccChhHccccccccccccccceEeecCc
Confidence 777776 334444321 1111000112456777777766
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=5.4e-08 Score=79.39 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhh--hhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSM--IERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~l--p~~~~~l~~l~~L~ 80 (157)
++|+.|+++++ .+..+|..++.+++|+.|++++ .+..+|.-+..++|+.|+++++ .+. .+ |. .+..+++|+
T Consensus 463 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N-~l~-~~~~p~---~l~~l~~L~ 536 (567)
T 1dce_A 463 LLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN-RLQ-QSAAIQ---PLVSCPRLV 536 (567)
T ss_dssp TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCC-SSSTTG---GGGGCTTCC
T ss_pred ccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC-CCC-CCCCcH---HHhcCCCCC
Confidence 58999999995 7889999999999999999999 8888885455679999999885 666 55 66 588999999
Q ss_pred EEEEecCCCCCcccCcccccCCCCCCCCCccEEe
Q 040713 81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLW 114 (157)
Q Consensus 81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~ 114 (157)
.|++++ +.+..+|..+..+ ....++|+.|+
T Consensus 537 ~L~L~~--N~l~~~~~~~~~l--~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQG--NSLCQEEGIQERL--AEMLPSVSSIL 566 (567)
T ss_dssp EEECTT--SGGGGSSSCTTHH--HHHCTTCSEEE
T ss_pred EEEecC--CcCCCCccHHHHH--HHHCcccCccC
Confidence 999998 5455554422211 01125777764
No 100
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.65 E-value=4.7e-08 Score=79.86 Aligned_cols=125 Identities=14% Similarity=0.263 Sum_probs=88.8
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++++.|++.++ .+..+|.. +..+++|++|++++ .+..++... ..++|+.|++++| .+. .++.. .++++++|
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR-YLPPH--VFQNVPLL 125 (597)
T ss_dssp CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCC-CCCHH--HHcCCCCC
Confidence 57888999885 67778765 46899999999999 888887643 3479999999986 566 56553 57899999
Q ss_pred CEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713 80 RHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN 146 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~ 146 (157)
++|++++ +.+..+|..+ ..+ ++|+.|++++|.- . ......+..+.++..+.+.+
T Consensus 126 ~~L~L~~--n~l~~l~~~~~~~l------~~L~~L~Ls~N~l-~----~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 126 TVLVLER--NDLSSLPRGIFHNT------PKLTTLSMSNNNL-E----RIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp CEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSCC-C----BCCTTTTTTCTTCCEEECTT
T ss_pred CEEEeeC--CCCCCCCHHHhccC------CCCCEEEeeCCcC-C----CCChhhhhcCCcCcEEECcC
Confidence 9999998 4455555432 333 7999999998752 1 11122344455566665554
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=1.2e-07 Score=69.95 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|+.|++++| .+..++ ++..+++|+.|++++ .+..++.-...++|+.|+++++ .++ .++. +.. ++|++|
T Consensus 41 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N-~l~-~l~~----~~~-~~L~~L 111 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN-RLK-NLNG----IPS-ACLSRL 111 (263)
T ss_dssp TTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCS-CCTT----CCC-SSCCEE
T ss_pred CcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC-ccC-CcCc----ccc-CcccEE
Confidence 58999999996 677887 688999999999999 8888876444579999999885 666 6664 333 899999
Q ss_pred EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++++ +.+..++ .+..+ ++|+.|+++++.
T Consensus 112 ~L~~--N~l~~~~-~l~~l------~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 112 FLDN--NELRDTD-SLIHL------KNLEILSIRNNK 139 (263)
T ss_dssp ECCS--SCCSBSG-GGTTC------TTCCEEECTTSC
T ss_pred EccC--CccCCCh-hhcCc------ccccEEECCCCc
Confidence 9998 4565554 34444 789999998864
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1e-07 Score=81.30 Aligned_cols=86 Identities=24% Similarity=0.297 Sum_probs=61.9
Q ss_pred CCcceEeeecCcCCcccCc--ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCc-c
Q 040713 4 AKLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS-L 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~-L 79 (157)
++|+.|++++| .+..+|. .+.++++|+.|++++ .+..+|.-+..++|+.|++++| .+. .+|. .+..+++ |
T Consensus 548 ~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N-~l~-~lp~---~l~~l~~~L 621 (876)
T 4ecn_A 548 PKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN-QIE-EIPE---DFCAFTDQV 621 (876)
T ss_dssp TTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS-CCS-CCCT---TSCEECTTC
T ss_pred CCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC-ccc-cchH---HHhhccccC
Confidence 57888888875 5667887 778888888888888 7777774344568888888775 455 6776 4777777 8
Q ss_pred CEEEEecCCCCCcccCcc
Q 040713 80 RHLTISGCDDDMVSFPPE 97 (157)
Q Consensus 80 ~~L~i~~~c~~l~~lp~~ 97 (157)
++|++++ | .+..+|..
T Consensus 622 ~~L~Ls~-N-~L~~lp~~ 637 (876)
T 4ecn_A 622 EGLGFSH-N-KLKYIPNI 637 (876)
T ss_dssp CEEECCS-S-CCCSCCSC
T ss_pred CEEECcC-C-CCCcCchh
Confidence 8888887 3 35566643
No 103
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.63 E-value=1.2e-07 Score=71.29 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=56.4
Q ss_pred CCCcceEeeecCcCCcccCccc--CCCCcccEEEeeC-cccCCCCC--C----CCCCccEEEecCCCCchhhhhhccccC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGL--HNLTSLQELKIGG-ELPSLEED--G----LPTNLHSLWIDGNKKIWKSMIERGRGF 73 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~-~l~~lp~~--~----~~~~L~~L~i~~c~~l~~~lp~~~~~l 73 (157)
.++|++|+++++.--..+|..+ ..+++|++|++++ .+..+|.. . .+++|++|+++++ .+. .++.. .+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~-~~~~~--~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSL-NFSCE--QV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCC-CCCTT--TC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCc-cchHH--Hh
Confidence 4678888898864333677765 7888888888888 77766432 1 1267888888775 454 44432 57
Q ss_pred CCCCccCEEEEecCCC
Q 040713 74 HRFSSLRHLTISGCDD 89 (157)
Q Consensus 74 ~~l~~L~~L~i~~~c~ 89 (157)
..+++|++|++++ +.
T Consensus 170 ~~l~~L~~L~Ls~-N~ 184 (312)
T 1wwl_A 170 RVFPALSTLDLSD-NP 184 (312)
T ss_dssp CCCSSCCEEECCS-CT
T ss_pred ccCCCCCEEECCC-CC
Confidence 7788888888887 44
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.63 E-value=2.1e-07 Score=78.91 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC--cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG--ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~--~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
++|++|+++++ .+..+ |..+.++++|++|++++ .+..+++..+ .++|++|++++| .+....|. .+.++++
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~---~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPD---AFQGLFH 98 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTT---SSCSCSS
T ss_pred CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHh---HccCCcc
Confidence 46777777775 34443 45666777777777766 3334433322 256677777664 34312233 4666666
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|++|++++
T Consensus 99 L~~L~Ls~ 106 (844)
T 3j0a_A 99 LFELRLYF 106 (844)
T ss_dssp CCCEECTT
T ss_pred cCEeeCcC
Confidence 66666666
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.63 E-value=1.2e-07 Score=78.12 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=49.6
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
+++++|+++++ .++.++. .+.++++|++|++++ .+..+++..+ .++|++|++++| .+. .+|.. .+.++++|
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~--~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELS-QLSDK--TFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccC-ccChh--hhccCCCC
Confidence 47788888775 4555554 466777777777777 6666554322 356777777664 454 55543 46666777
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 100 ~~L~L~~ 106 (680)
T 1ziw_A 100 TELHLMS 106 (680)
T ss_dssp SEEECCS
T ss_pred CEEECCC
Confidence 7777776
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.62 E-value=1.1e-07 Score=78.38 Aligned_cols=78 Identities=27% Similarity=0.337 Sum_probs=46.8
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|++|+++++ .+..+ |..+.++++|++|++++ .+..+|...+ .++|++|++++| .+. .++.. .+.++++|
T Consensus 49 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L 123 (680)
T 1ziw_A 49 SQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQ-KIKNN--PFVKQKNL 123 (680)
T ss_dssp TTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCSC--TTTTCTTC
T ss_pred CcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccC-ccChh--HccccCCC
Confidence 46777777765 33333 44556677777777776 6666665422 356777777664 344 44432 45666677
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 124 ~~L~Ls~ 130 (680)
T 1ziw_A 124 ITLDLSH 130 (680)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 7777766
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.61 E-value=2.8e-07 Score=73.14 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=54.7
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|++++| .++.+| .++++++|++|++++ .+..+|. .+++|++|++++| .+. .+| .++.+++|++|
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n-~l~-~l~----~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNN-QLE-ELP----ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCS-SCC----CCTTCTTCCEE
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCC-cCC-cCc----cccCCCCCCEE
Confidence 47888888885 566677 588888999999988 7777764 2358888888875 565 565 26777888888
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 201 ~l~~ 204 (454)
T 1jl5_A 201 YADN 204 (454)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8877
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=1.9e-07 Score=73.90 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=13.9
Q ss_pred CCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713 25 HNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG 58 (157)
Q Consensus 25 ~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~ 58 (157)
..+++|+.|++++ .+..++.-...++|+.|++++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred hcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence 3444444444444 333333222223444444444
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.60 E-value=1.1e-08 Score=77.29 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=17.4
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG 37 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 37 (157)
++|++|++++|.--...+..+..+++|++|++++
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 4556666655532223444445555555555554
No 110
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.58 E-value=2.3e-07 Score=64.07 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=66.0
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|+.|+++++ .+..+ |..+..+++|++|++++ .+..++...+ .++|+.|+++++ .++ .++.. .+..+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLK-SIPRG--AFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccC-EeCHH--HhcCCCCC
Confidence 68999999995 67776 55688999999999999 9999988654 479999999885 676 67764 58889999
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 105 ~~L~L~~ 111 (170)
T 3g39_A 105 THIWLLN 111 (170)
T ss_dssp CEEECCS
T ss_pred CEEEeCC
Confidence 9999998
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.58 E-value=1.4e-07 Score=72.20 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=40.0
Q ss_pred cccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc
Q 040713 29 SLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP 96 (157)
Q Consensus 29 ~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~ 96 (157)
.++.|++++ .+..++...+. .+|+.|.+.+++.++ .+|.. .+..+++|++|++++ +.++++|.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~--~f~~l~~L~~LdLs~--N~l~~lp~ 219 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPND--VFHGASGPVILDISR--TRIHSLPS 219 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTT--TTTTEECCSEEECTT--SCCCCCCS
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHH--HhccCcccchhhcCC--CCcCccCh
Confidence 455666666 66666554432 467777777666676 67664 566777788888776 45555554
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.58 E-value=2.8e-07 Score=78.18 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|++|++++|.....+ |..++++++|++|++++ .+..+.+..+ .++|+.|++++| .+...++.. ..+.++++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~~L~~ 124 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKD-GYFRNLKA 124 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTT-CCCSSCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccC-ccccccCC
Confidence 368999999998666666 66788999999999998 7777755433 468999999886 444234431 13778899
Q ss_pred cCEEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCC
Q 040713 79 LRHLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGC 118 (157)
Q Consensus 79 L~~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c 118 (157)
|++|++++ | .+..++ ..+..+ ++|++|++.++
T Consensus 125 L~~L~Ls~-N-~l~~~~~~~~~~~L------~~L~~L~Ls~N 158 (844)
T 3j0a_A 125 LTRLDLSK-N-QIRSLYLHPSFGKL------NSLKSIDFSSN 158 (844)
T ss_dssp CCEEEEES-C-CCCCCCCCGGGGTC------SSCCEEEEESS
T ss_pred CCEEECCC-C-cccccccchhHhhC------CCCCEEECCCC
Confidence 99999998 4 343332 233333 57777777665
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.58 E-value=8.6e-08 Score=76.68 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=35.7
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCC-CCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFH-RFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~-~l~~L 79 (157)
++|+.|++++| .+..++. ..+++|+.|++++ .+..+++..+ .++|+.|+++++ .+....|. .+. .+++|
T Consensus 99 ~~L~~L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~l~~~l~~L 171 (487)
T 3oja_A 99 PSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFA---ELAASSDTL 171 (487)
T ss_dssp TTCCEEECCSS-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGG---GGGGGTTTC
T ss_pred CCcCEEECcCC-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChH---HHhhhCCcc
Confidence 34555555553 3333332 2356666666666 5555543322 245666666553 33312222 122 34555
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
++|++++
T Consensus 172 ~~L~Ls~ 178 (487)
T 3oja_A 172 EHLNLQY 178 (487)
T ss_dssp CEEECTT
T ss_pred cEEecCC
Confidence 5555554
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.57 E-value=6.6e-07 Score=71.06 Aligned_cols=52 Identities=27% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGN 59 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c 59 (157)
++|++|++++| .++.++ ++++++|++|++++ .+..++- +..++|+.|+++++
T Consensus 85 ~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~l~~-~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 85 TNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDV-SQNPLLTYLNCARN 137 (457)
T ss_dssp TTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSCCCC-TTCTTCCEEECTTS
T ss_pred CCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCeecC-CCCCcCCEEECCCC
Confidence 46777777764 455553 56666677777766 5555542 22245666666553
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.56 E-value=5.6e-07 Score=71.44 Aligned_cols=73 Identities=26% Similarity=0.344 Sum_probs=51.8
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|+++++ .++.+| ++..+++|++|++++ .+..++- +..++|++|++++| .++ .++ ++.+++|++|
T Consensus 42 ~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~L~~L~Ls~N-~l~-~~~-----~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLDL-SQNTNLTYLACDSN-KLT-NLD-----VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCCC-TTCTTCSEEECCSS-CCS-CCC-----CTTCTTCCEE
T ss_pred CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEcc-ccCCCCCEEECcCC-CCc-eee-----cCCCCcCCEE
Confidence 57888888885 566666 577888888888888 7777763 33357888888775 454 332 5667777888
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 112 ~L~~ 115 (457)
T 3bz5_A 112 NCDT 115 (457)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 7777
No 116
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.8e-07 Score=71.19 Aligned_cols=99 Identities=26% Similarity=0.221 Sum_probs=72.2
Q ss_pred eEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 8 RLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 8 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
.++.++.+.+..+|. +..+++|+.|+|++ .+..++...+ .++|+.|+++++ .+. .++.. .+.++++|++|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~-~~~~~--~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLR-FVAPD--AFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCC-EECTT--GGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccc-eeCHH--HhcCCcCCCEEe
Confidence 455555336888999 99999999999983 8888876533 479999999885 676 56654 578899999999
Q ss_pred EecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 84 ISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 84 i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+++ +.+..+|..+-.. .+|+.|++.+++
T Consensus 87 l~~--N~l~~~~~~~~~~------~~L~~l~l~~N~ 114 (347)
T 2ifg_A 87 LSF--NALESLSWKTVQG------LSLQELVLSGNP 114 (347)
T ss_dssp CCS--SCCSCCCSTTTCS------CCCCEEECCSSC
T ss_pred CCC--CccceeCHHHccc------CCceEEEeeCCC
Confidence 998 6566555422111 238999987754
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.52 E-value=1.3e-08 Score=77.01 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=48.7
Q ss_pred CCcceEeeecCcCCc-c-cCcccCCCCcccEEEeeC-cccC-CCCC-CCCCCccEEEecCCCCchh-hhhhccccCCCCC
Q 040713 4 AKLTRLEIYDCKRLE-A-LPKGLHNLTSLQELKIGG-ELPS-LEED-GLPTNLHSLWIDGNKKIWK-SMIERGRGFHRFS 77 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~-~-lp~~~~~l~~L~~L~l~~-~l~~-lp~~-~~~~~L~~L~i~~c~~l~~-~lp~~~~~l~~l~ 77 (157)
++|++|++++|. +. . ++..+..+++|++|++++ .+.. .+.. +..++|+.|++++|..+.. .++. .+.+++
T Consensus 93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~---~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT---LLSSCS 168 (336)
T ss_dssp BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH---HHHHCT
T ss_pred CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH---HHhcCC
Confidence 578888888764 33 2 566667788888888877 4431 1110 1134777777777655542 1443 244556
Q ss_pred ccCEEEEecCCCCCc
Q 040713 78 SLRHLTISGCDDDMV 92 (157)
Q Consensus 78 ~L~~L~i~~~c~~l~ 92 (157)
+|++|++++ |..+.
T Consensus 169 ~L~~L~l~~-~~~l~ 182 (336)
T 2ast_B 169 RLDELNLSW-CFDFT 182 (336)
T ss_dssp TCCEEECCC-CTTCC
T ss_pred CCCEEcCCC-CCCcC
Confidence 666666666 53343
No 118
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.50 E-value=3.9e-07 Score=68.54 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCcceEeeecCcCCcccCcccCCC-----CcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhh--hhhccccC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNL-----TSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKS--MIERGRGF 73 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~--lp~~~~~l 73 (157)
++|++|+++++ .+..+|..+..+ ++|++|++++ .+..++...+ .++|+.|+++++.-.. . ++.. ..+
T Consensus 121 ~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-~~~ 197 (312)
T 1wwl_A 121 PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGLISA-LCP 197 (312)
T ss_dssp CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH-HHHHHHH-SCT
T ss_pred CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc-chHHHHH-HHh
Confidence 57888888885 566666666555 8888888888 7777775433 3688888888764332 2 2321 012
Q ss_pred CCCCccCEEEEec
Q 040713 74 HRFSSLRHLTISG 86 (157)
Q Consensus 74 ~~l~~L~~L~i~~ 86 (157)
..+++|++|++++
T Consensus 198 ~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 198 LKFPTLQVLALRN 210 (312)
T ss_dssp TSCTTCCEEECTT
T ss_pred ccCCCCCEEECCC
Confidence 6778888888887
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.48 E-value=1.1e-07 Score=79.55 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=80.0
Q ss_pred cccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccC
Q 040713 18 EALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFP 95 (157)
Q Consensus 18 ~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp 95 (157)
...+..+..+++|+.|++++ .+..+|... ..++|+.|+++++ .+. .+|. .+..+++|++|++++ +.+..+|
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~-~lp~---~~~~l~~L~~L~Ls~--N~l~~lp 286 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLT-ELPA---EIKNLSNLRVLDLSH--NRLTSLP 286 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCS-CCCG---GGGGGTTCCEEECTT--SCCSSCC
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCc-ccCh---hhhCCCCCCEEeCcC--CcCCccC
Confidence 33456677899999999999 888888653 3479999999885 676 7887 588999999999998 5576777
Q ss_pred cccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713 96 PELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147 (157)
Q Consensus 96 ~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~ 147 (157)
..+..+ ++|+.|++++|. +. .....+..+.++..+.+.+.
T Consensus 287 ~~~~~l------~~L~~L~L~~N~-l~-----~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 287 AELGSC------FQLKYFYFFDNM-VT-----TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SSGGGG------TTCSEEECCSSC-CC-----CCCSSTTSCTTCCCEECTTS
T ss_pred hhhcCC------CCCCEEECCCCC-CC-----ccChhhhcCCCccEEeCCCC
Confidence 777666 799999998874 32 12223666777888877664
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.47 E-value=4.4e-07 Score=71.85 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL 82 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L 82 (157)
++|++|++++| .+..++. +..+++|+.|++++ .+..++.-+..++|+.|++++| .+. .++. +..+++|++|
T Consensus 265 ~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~-~~~~----~~~l~~L~~L 336 (466)
T 1o6v_A 265 TKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NIS-DISP----VSSLTKLQRL 336 (466)
T ss_dssp TTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCS-CCGG----GGGCTTCCEE
T ss_pred CCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCC-Cchh----hccCccCCEe
Confidence 56777777775 4555544 55666777777766 5555544333346666666554 333 2221 2344555555
Q ss_pred EEec
Q 040713 83 TISG 86 (157)
Q Consensus 83 ~i~~ 86 (157)
++++
T Consensus 337 ~l~~ 340 (466)
T 1o6v_A 337 FFYN 340 (466)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5554
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.45 E-value=1.1e-06 Score=72.55 Aligned_cols=49 Identities=39% Similarity=0.482 Sum_probs=26.5
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG 58 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~ 58 (157)
++|+.|++++| .++.+|. .+++|++|++++ .+..+|. .+++|+.|++++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 45666666664 4555554 345566666665 5555554 223555555544
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.45 E-value=1.2e-06 Score=69.58 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=52.9
Q ss_pred CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713 5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT 83 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~ 83 (157)
+|++|+++++ .+..+| .++.+++|+.|++++ .+..+|. .+++|+.|++++| .+. .+|. +..+++|++|+
T Consensus 174 ~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n-~l~-~lp~----~~~l~~L~~L~ 243 (454)
T 1jl5_A 174 SLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNN-ILE-ELPE----LQNLPFLTTIY 243 (454)
T ss_dssp TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSS-CCS-SCCC----CTTCTTCCEEE
T ss_pred cccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCC-cCC-cccc----cCCCCCCCEEE
Confidence 5666666664 455565 467778888888877 6666654 3357888888775 555 6663 56778888888
Q ss_pred EecCCCCCcccC
Q 040713 84 ISGCDDDMVSFP 95 (157)
Q Consensus 84 i~~~c~~l~~lp 95 (157)
+++ +.+..+|
T Consensus 244 l~~--N~l~~l~ 253 (454)
T 1jl5_A 244 ADN--NLLKTLP 253 (454)
T ss_dssp CCS--SCCSSCC
T ss_pred CCC--CcCCccc
Confidence 877 3444444
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.44 E-value=4.8e-09 Score=74.12 Aligned_cols=101 Identities=24% Similarity=0.414 Sum_probs=69.2
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
++|++|+++++ .+..+| .+..+++|+.|++++ .+..+|... ..++|+.|++++| .+. .+|. +..+++|++
T Consensus 48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~-~l~~----~~~l~~L~~ 119 (198)
T 1ds9_A 48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIA-SLSG----IEKLVNLRV 119 (198)
T ss_dssp TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECC-CHHH----HHHHHHSSE
T ss_pred CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCC-cCCc----cccCCCCCE
Confidence 57888888775 566677 677788888888888 777776432 2257888888775 555 5553 556778888
Q ss_pred EEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCChh
Q 040713 82 LTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCPL 120 (157)
Q Consensus 82 L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~~ 120 (157)
|++++ +.+..+|. .+..+ ++|+.|++.+|+-
T Consensus 120 L~l~~--N~i~~~~~~~~l~~l------~~L~~L~l~~N~l 152 (198)
T 1ds9_A 120 LYMSN--NKITNWGEIDKLAAL------DKLEDLLLAGNPL 152 (198)
T ss_dssp EEESE--EECCCHHHHHHHTTT------TTCSEEEECSCHH
T ss_pred EECCC--CcCCchhHHHHHhcC------CCCCEEEecCCcc
Confidence 88887 44554432 33333 7899999998863
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.43 E-value=1.2e-06 Score=72.19 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=18.2
Q ss_pred CccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 77 SSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 77 ~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|+.|++++ +.+..+|..+..+ ++|+.|++++++
T Consensus 261 ~~L~~L~Ls~--N~L~~lp~~l~~l------~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYR--NQLTRLPESLIHL------SSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCS--SCCCSCCGGGGGS------CTTCEEECCSCC
T ss_pred ccCcEEeCCC--CCCCcCCHHHhhc------cccCEEEecCCC
Confidence 4455555554 2333444433333 567777777664
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.40 E-value=9.7e-07 Score=72.12 Aligned_cols=12 Identities=8% Similarity=0.100 Sum_probs=8.4
Q ss_pred CCccEEeeeCCh
Q 040713 108 SSLLQLWIWGCP 119 (157)
Q Consensus 108 ~~L~~L~i~~c~ 119 (157)
++|+.|++++++
T Consensus 230 ~~L~~L~L~~N~ 241 (571)
T 3cvr_A 230 DPTCTIILEDNP 241 (571)
T ss_dssp CTTEEEECCSSS
T ss_pred CCCCEEEeeCCc
Confidence 577777777764
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.36 E-value=2.2e-06 Score=70.05 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=4.3
Q ss_pred CccCEEEEec
Q 040713 77 SSLRHLTISG 86 (157)
Q Consensus 77 ~~L~~L~i~~ 86 (157)
++|++|++++
T Consensus 140 ~~L~~L~Ls~ 149 (571)
T 3cvr_A 140 ALLEYINADN 149 (571)
T ss_dssp TTCCEEECCS
T ss_pred ccccEEeCCC
Confidence 3444444443
No 127
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.33 E-value=3.2e-07 Score=68.89 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=15.8
Q ss_pred CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC
Q 040713 4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG 37 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~ 37 (157)
++|++|++++|. +..+ +..+..+++|++|++++
T Consensus 145 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 178 (310)
T 4glp_A 145 PGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSD 178 (310)
T ss_dssp SCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCS
T ss_pred cCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCC
Confidence 355555555542 2222 23444555555555555
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.28 E-value=1.4e-06 Score=66.17 Aligned_cols=79 Identities=27% Similarity=0.331 Sum_probs=63.8
Q ss_pred CCCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713 3 CAKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS 78 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~ 78 (157)
.++|+.|++++++.+..+| ..+..+++|+.|+|++ .|..+++.. ..++|+.|++++ +.+. .+|.. .+..++
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~-~~~~~--~~~~~~- 104 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALE-SLSWK--TVQGLS- 104 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCS-CCCST--TTCSCC-
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cccc-eeCHH--HcccCC-
Confidence 3579999999756888887 4688999999999999 999888764 347999999988 5777 77764 455554
Q ss_pred cCEEEEec
Q 040713 79 LRHLTISG 86 (157)
Q Consensus 79 L~~L~i~~ 86 (157)
|+.|++.+
T Consensus 105 L~~l~l~~ 112 (347)
T 2ifg_A 105 LQELVLSG 112 (347)
T ss_dssp CCEEECCS
T ss_pred ceEEEeeC
Confidence 99999987
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.28 E-value=2.4e-06 Score=64.08 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCcceEeeecCcCCcccCccc--CCCCcccEEEeeC-cccCCCC----C--CCCCCccEEEecCCCCchhhhhhccccCC
Q 040713 4 AKLTRLEIYDCKRLEALPKGL--HNLTSLQELKIGG-ELPSLEE----D--GLPTNLHSLWIDGNKKIWKSMIERGRGFH 74 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~-~l~~lp~----~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~ 74 (157)
++|++|++++|.-....|..+ ..+++|++|++++ .+..... . ...++|++|++++| .+. .++.. .+.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~-~~~~~--~~~ 166 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSP-AFSCE--QVR 166 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSC-CCCTT--SCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-Ccc-hhhHH--Hhc
Confidence 458888888864444556555 6788888888887 5554211 0 12457788888775 344 34332 466
Q ss_pred CCCccCEEEEec
Q 040713 75 RFSSLRHLTISG 86 (157)
Q Consensus 75 ~l~~L~~L~i~~ 86 (157)
.+++|++|++++
T Consensus 167 ~l~~L~~L~Ls~ 178 (310)
T 4glp_A 167 AFPALTSLDLSD 178 (310)
T ss_dssp CCTTCCEEECCS
T ss_pred cCCCCCEEECCC
Confidence 777788888777
No 130
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=3.9e-07 Score=63.64 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=58.2
Q ss_pred cCcccCCCCcccEEEeeC-cccC--CCCCCCCCCccEEEecCCCCchhhhhhccccCCCC----CccCEEEEecCCCCCc
Q 040713 20 LPKGLHNLTSLQELKIGG-ELPS--LEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRF----SSLRHLTISGCDDDMV 92 (157)
Q Consensus 20 lp~~~~~l~~L~~L~l~~-~l~~--lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l----~~L~~L~i~~~c~~l~ 92 (157)
+|.....--.|+.|++++ .+.. +..-...++|+.|++++|..++..--. .+..+ ++|++|++++ |++++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~~~~~~L~~L~Ls~-C~~IT 128 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE---RLSQLENLQKSMLEMEIIS-CGNVT 128 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH---HHHTCHHHHHHCCEEEEES-CTTCC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH---HHHhcccccCCCCEEEcCC-CCcCC
Confidence 444332233688888888 4321 111112358999999999877622111 23343 3799999999 98776
Q ss_pred ccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713 93 SFPPELKYFPEKGLPSSLLQLWIWGCPLIA 122 (157)
Q Consensus 93 ~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~ 122 (157)
.- .+..+.. .++|++|++++|+.++
T Consensus 129 D~--Gl~~L~~---~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 129 DK--GIIALHH---FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HH--HHHHGGG---CTTCCEEEEESCTTCC
T ss_pred HH--HHHHHhc---CCCCCEEECCCCCCCC
Confidence 42 3444421 2799999999998765
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.99 E-value=7.8e-08 Score=67.83 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=63.1
Q ss_pred CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhh-ccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~L~~ 81 (157)
++|+.|++++| .+..+|..+..+++|++|++++ .+..+|.-+..++|+.|+++++ .+. .++. . .+..+++|++
T Consensus 70 ~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N-~i~-~~~~~~--~l~~l~~L~~ 144 (198)
T 1ds9_A 70 ENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN-KIT-NWGEID--KLAALDKLED 144 (198)
T ss_dssp TTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEE-ECC-CHHHHH--HHTTTTTCSE
T ss_pred CCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCC-cCC-chhHHH--HHhcCCCCCE
Confidence 68999999996 6778888777889999999999 8887764233368999999885 454 4443 2 4778999999
Q ss_pred EEEecCCC
Q 040713 82 LTISGCDD 89 (157)
Q Consensus 82 L~i~~~c~ 89 (157)
|++++ ++
T Consensus 145 L~l~~-N~ 151 (198)
T 1ds9_A 145 LLLAG-NP 151 (198)
T ss_dssp EEECS-CH
T ss_pred EEecC-Cc
Confidence 99998 54
No 132
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=8.5e-06 Score=56.83 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=48.1
Q ss_pred CcceEeeecCcCCccc-CcccCCCCcccEEEeeC--ccc-----CCCCC-CCCCCccEEEecCCCCchhh-hhhccccCC
Q 040713 5 KLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG--ELP-----SLEED-GLPTNLHSLWIDGNKKIWKS-MIERGRGFH 74 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~--~l~-----~lp~~-~~~~~L~~L~i~~c~~l~~~-lp~~~~~l~ 74 (157)
+|+.|++++|. ++.. -..+..+++|++|++++ .+. .+... ...++|+.|+|++|.+++.. +. .+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~----~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII----ALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH----HGG
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH----HHh
Confidence 57778888775 3321 12245677788888876 232 12111 01136788888888777521 22 255
Q ss_pred CCCccCEEEEecCCCCCc
Q 040713 75 RFSSLRHLTISGCDDDMV 92 (157)
Q Consensus 75 ~l~~L~~L~i~~~c~~l~ 92 (157)
.+++|++|++++ |+.++
T Consensus 137 ~~~~L~~L~L~~-c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSD-LPGVK 153 (176)
T ss_dssp GCTTCCEEEEES-CTTCC
T ss_pred cCCCCCEEECCC-CCCCC
Confidence 677788888888 77654
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.94 E-value=3.9e-06 Score=64.73 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=42.6
Q ss_pred CCcceEeeecCcCCc--ccC---cccCCCCcccEEEeeC-ccc------CCC-CCCCCCCccEEEecCCCCch----hhh
Q 040713 4 AKLTRLEIYDCKRLE--ALP---KGLHNLTSLQELKIGG-ELP------SLE-EDGLPTNLHSLWIDGNKKIW----KSM 66 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~--~lp---~~~~~l~~L~~L~l~~-~l~------~lp-~~~~~~~L~~L~i~~c~~l~----~~l 66 (157)
++|++|++++|. +. .++ ..+..+++|++|++++ .+. .++ .-...++|+.|++++|. +. ..+
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 567777777753 32 233 3445666777777776 444 111 11123467777776653 31 144
Q ss_pred hhccccCCCCCccCEEEEec
Q 040713 67 IERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 67 p~~~~~l~~l~~L~~L~i~~ 86 (157)
+. .+..+++|++|++++
T Consensus 237 ~~---~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 237 AI---ALKSWPNLRELGLND 253 (386)
T ss_dssp HH---HGGGCTTCCEEECTT
T ss_pred HH---HHccCCCcCEEECCC
Confidence 54 355666666676666
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.91 E-value=3.9e-06 Score=64.67 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=26.3
Q ss_pred CCcceEeeecCcCCc------ccCcccCCCCcccEEEeeC-cc-----cCCCCC-CCCCCccEEEecCC
Q 040713 4 AKLTRLEIYDCKRLE------ALPKGLHNLTSLQELKIGG-EL-----PSLEED-GLPTNLHSLWIDGN 59 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~------~lp~~~~~l~~L~~L~l~~-~l-----~~lp~~-~~~~~L~~L~i~~c 59 (157)
++|++|++++| .+. ..+..+..+++|+.|++++ .+ ..++.. ...++|+.|++++|
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 35666666654 333 1222455566666666665 43 222221 11235666666554
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=7e-05 Score=56.51 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=44.3
Q ss_pred CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeCcccCCCCCCCC--CCcc-EEEecCCCCchhhhhhccccCCCCCcc
Q 040713 4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGGELPSLEEDGLP--TNLH-SLWIDGNKKIWKSMIERGRGFHRFSSL 79 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~-~L~i~~c~~l~~~lp~~~~~l~~l~~L 79 (157)
++|+.|++.++ .++.+|.. +.++++|+.|++.+++..++...|. ++|+ .+.+.+ .++ .++.. .+.++++|
T Consensus 226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~-~I~~~--aF~~c~~L 299 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVT-AIEFG--AFMGCDNL 299 (329)
T ss_dssp TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCC-EECTT--TTTTCTTE
T ss_pred CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cce-EEchh--hhhCCccC
Confidence 46666666653 45555543 4566666666666655555555443 4566 666654 444 45444 55666666
Q ss_pred CEEEEec
Q 040713 80 RHLTISG 86 (157)
Q Consensus 80 ~~L~i~~ 86 (157)
+.+++.+
T Consensus 300 ~~l~l~~ 306 (329)
T 3sb4_A 300 RYVLATG 306 (329)
T ss_dssp EEEEECS
T ss_pred CEEEeCC
Confidence 6666654
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.75 E-value=7.1e-06 Score=62.86 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=18.0
Q ss_pred CCcceEeeecCcCCcccCc-----ccCCC-CcccEEEeeC-ccc
Q 040713 4 AKLTRLEIYDCKRLEALPK-----GLHNL-TSLQELKIGG-ELP 40 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-----~~~~l-~~L~~L~l~~-~l~ 40 (157)
++|++|++++| .+...+. .+..+ ++|++|++++ .+.
T Consensus 109 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 109 FTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 46666776665 3433321 12232 4666666665 443
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.68 E-value=7.8e-06 Score=66.02 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=8.0
Q ss_pred CCccCEEEEecCCCCCc
Q 040713 76 FSSLRHLTISGCDDDMV 92 (157)
Q Consensus 76 l~~L~~L~i~~~c~~l~ 92 (157)
+++|++|++++ |..+.
T Consensus 210 ~~~L~~L~L~~-~~~~~ 225 (594)
T 2p1m_B 210 CPNLKSLKLNR-AVPLE 225 (594)
T ss_dssp CTTCCEEECCT-TSCHH
T ss_pred CCCCcEEecCC-CCcHH
Confidence 45555555555 44333
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.60 E-value=3.2e-05 Score=62.43 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCcceEeeec---CcCCcccC------cccCCCCcccEEEeeC---ccc-----CCCCCCCCCCccEEEecCCCCchh-h
Q 040713 4 AKLTRLEIYD---CKRLEALP------KGLHNLTSLQELKIGG---ELP-----SLEEDGLPTNLHSLWIDGNKKIWK-S 65 (157)
Q Consensus 4 ~~L~~L~l~~---c~~l~~lp------~~~~~l~~L~~L~l~~---~l~-----~lp~~~~~~~L~~L~i~~c~~l~~-~ 65 (157)
++|++|++.+ |+.++..| ..+..+++|++|+++. .+. .+. ...++|+.|++++|. +.. .
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~ 479 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVG-ESDEG 479 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCC-SSHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCC-CCHHH
Confidence 4666777663 34444332 1234567777777743 111 111 123578888887764 431 3
Q ss_pred hhhccccCCCCCccCEEEEecCCCCCcc--cCcccccCCCCCCCCCccEEeeeCCh
Q 040713 66 MIERGRGFHRFSSLRHLTISGCDDDMVS--FPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 66 lp~~~~~l~~l~~L~~L~i~~~c~~l~~--lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++. .+.++++|++|++++ |+ +.. ++..+..+ ++|+.|++++|.
T Consensus 480 ~~~---~~~~~~~L~~L~l~~-n~-l~~~~~~~~~~~l------~~L~~L~ls~n~ 524 (592)
T 3ogk_B 480 LME---FSRGCPNLQKLEMRG-CC-FSERAIAAAVTKL------PSLRYLWVQGYR 524 (592)
T ss_dssp HHH---HHTCCTTCCEEEEES-CC-CBHHHHHHHHHHC------SSCCEEEEESCB
T ss_pred HHH---HHhcCcccCeeeccC-CC-CcHHHHHHHHHhc------CccCeeECcCCc
Confidence 443 256678888888888 76 321 22222333 689999998887
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.48 E-value=1.6e-05 Score=64.14 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=60.3
Q ss_pred CCcceEeee-----cCcCCcccCc------ccCCCCcccEEEeeCcccC--CCCCC-CCCCccEEEecCCCCchhhhhhc
Q 040713 4 AKLTRLEIY-----DCKRLEALPK------GLHNLTSLQELKIGGELPS--LEEDG-LPTNLHSLWIDGNKKIWKSMIER 69 (157)
Q Consensus 4 ~~L~~L~l~-----~c~~l~~lp~------~~~~l~~L~~L~l~~~l~~--lp~~~-~~~~L~~L~i~~c~~l~~~lp~~ 69 (157)
++|++|++. +|..++..|. .+..+++|+.|++++.+.. ++..+ ..++|+.|++++|.-....+..
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~- 475 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH- 475 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH-
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHH-
Confidence 567777777 4555553331 1345677777777651111 00001 1457888888887532211221
Q ss_pred cccCCCCCccCEEEEecCCCCCcccC-cccccCCCCCCCCCccEEeeeCChh
Q 040713 70 GRGFHRFSSLRHLTISGCDDDMVSFP-PELKYFPEKGLPSSLLQLWIWGCPL 120 (157)
Q Consensus 70 ~~~l~~l~~L~~L~i~~~c~~l~~lp-~~l~~lp~~~l~~~L~~L~i~~c~~ 120 (157)
...++++|++|++++ |+...... ..+..+ ++|+.|++++|+.
T Consensus 476 --l~~~~~~L~~L~L~~-n~~~~~~~~~~~~~l------~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 476 --VLSGCDSLRKLEIRD-CPFGDKALLANASKL------ETMRSLWMSSCSV 518 (594)
T ss_dssp --HHHHCTTCCEEEEES-CSCCHHHHHHTGGGG------GGSSEEEEESSCC
T ss_pred --HHhcCCCcCEEECcC-CCCcHHHHHHHHHhC------CCCCEEeeeCCCC
Confidence 124578899999998 76421111 112223 6899999999974
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.46 E-value=4.6e-05 Score=58.28 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=14.0
Q ss_pred CcceEeeecCcCCcccC-----cccCCCC-cccEEEeeC
Q 040713 5 KLTRLEIYDCKRLEALP-----KGLHNLT-SLQELKIGG 37 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp-----~~~~~l~-~L~~L~l~~ 37 (157)
+|++|++++| .+...+ ..+..++ +|++|++++
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 60 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSG 60 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCS
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcC
Confidence 3555555553 233332 2333444 455555544
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00075 Score=50.80 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713 49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~ 86 (157)
++|+.+++.++ .++ .++.. .+.++++|+++.+.+
T Consensus 226 ~~L~~l~L~~n-~i~-~I~~~--aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 226 PNLVSLDISKT-NAT-TIPDF--TFAQKKYLLKIKLPH 259 (329)
T ss_dssp TTCCEEECTTB-CCC-EECTT--TTTTCTTCCEEECCT
T ss_pred CCCeEEECCCC-Ccc-eecHh--hhhCCCCCCEEECCc
Confidence 45666666542 344 55554 556666666666654
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.29 E-value=0.00017 Score=58.22 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=38.1
Q ss_pred CCCcceEeeecCcCCcc----cCcccCCCCcccEEEeeC-cccCCCCCC------CCCCccEEEecCCCCchhhhhhccc
Q 040713 3 CAKLTRLEIYDCKRLEA----LPKGLHNLTSLQELKIGG-ELPSLEEDG------LPTNLHSLWIDGNKKIWKSMIERGR 71 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~-~l~~lp~~~------~~~~L~~L~i~~c~~l~~~lp~~~~ 71 (157)
+++|++|++++|..... ++.....+++|++|++++ .+..+.... ..++|+.|++++| .+. .++.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~-~l~~--- 237 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EIL-ELVG--- 237 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGG-GGHH---
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHH-HHHH---
Confidence 35777888877631111 222233566777777766 443222111 1246666666664 232 3333
Q ss_pred cCCCCCccCEEEEe
Q 040713 72 GFHRFSSLRHLTIS 85 (157)
Q Consensus 72 ~l~~l~~L~~L~i~ 85 (157)
.+..+++|++|.++
T Consensus 238 ~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 238 FFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHCTTCCEEEEC
T ss_pred HHhhhhHHHhhccc
Confidence 23444455555554
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.28 E-value=2.4e-05 Score=61.32 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=46.8
Q ss_pred CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccCCCC----CCCC---CCccEEEecCCCCch----hhh
Q 040713 4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPSLEE----DGLP---TNLHSLWIDGNKKIW----KSM 66 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~lp~----~~~~---~~L~~L~i~~c~~l~----~~l 66 (157)
++|++|++++|. +. .++..+..+++|++|++++ .+..... .++. ++|++|++++|. +. ..+
T Consensus 28 ~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l 105 (461)
T 1z7x_W 28 QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVL 105 (461)
T ss_dssp TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred CCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHH
Confidence 467777777764 43 3455566677788888877 4432110 0111 268888887763 33 134
Q ss_pred hhccccCCCCCccCEEEEec
Q 040713 67 IERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 67 p~~~~~l~~l~~L~~L~i~~ 86 (157)
+. .+..+++|++|++++
T Consensus 106 ~~---~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 106 SS---TLRTLPTLQELHLSD 122 (461)
T ss_dssp HH---HTTSCTTCCEEECCS
T ss_pred HH---HHccCCceeEEECCC
Confidence 44 467777888888877
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.26 E-value=1.4e-05 Score=62.71 Aligned_cols=33 Identities=36% Similarity=0.619 Sum_probs=18.5
Q ss_pred CCcceEeeecCcCCcc-----cCcccCCCCcccEEEeeC
Q 040713 4 AKLTRLEIYDCKRLEA-----LPKGLHNLTSLQELKIGG 37 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~ 37 (157)
++|++|++++| .+.. ++..+..+++|++|++++
T Consensus 256 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 256 SRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp CCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 45666666665 3333 444445566666666665
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.15 E-value=0.00033 Score=54.01 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=19.6
Q ss_pred CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC
Q 040713 3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG 37 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 37 (157)
.|+|+.|.+.++..+ .++. + .+++|+.|.+..
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~ 202 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS 202 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence 468888888876433 2333 2 256666666664
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.98 E-value=0.0042 Score=48.39 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=36.8
Q ss_pred CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
+|+.+.+.+ .++.++. .+.++++|+.+++.+ .+..++...|. ++|+.+.+.+ .++ .++.. .+.++++|+.
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~-~I~~~--aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLK-EIGSQ--AFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCC-EECTT--TTTTCTTCCC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chh-eehhh--HhhCCCCCCE
Confidence 455555543 4444443 345667777777765 56555554432 4555555532 233 33333 3444444444
Q ss_pred EEE
Q 040713 82 LTI 84 (157)
Q Consensus 82 L~i 84 (157)
+.+
T Consensus 231 l~l 233 (401)
T 4fdw_A 231 IEI 233 (401)
T ss_dssp EEC
T ss_pred Eec
Confidence 444
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.92 E-value=0.0053 Score=47.29 Aligned_cols=112 Identities=20% Similarity=0.024 Sum_probs=58.7
Q ss_pred CCcceEeeecCcC----C-----cccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccC
Q 040713 4 AKLTRLEIYDCKR----L-----EALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGF 73 (157)
Q Consensus 4 ~~L~~L~l~~c~~----l-----~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l 73 (157)
++|+.|.|.+... + ..+...+..+++|+.|.+++ .-..++.. ..++|+.|++..|.--...+..- ..
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l--~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDI--LG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHH--HH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHH--HH
Confidence 5899998865211 1 12333445789999999987 21234432 24689999998664221112110 12
Q ss_pred CCCCccCEEEEecCCCCC-c-cc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713 74 HRFSSLRHLTISGCDDDM-V-SF-PPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 74 ~~l~~L~~L~i~~~c~~l-~-~l-p~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
..+++|++|+++. +... . .. ...+..+-....+++|+.|.+.+|.
T Consensus 216 ~~lp~L~~L~L~~-~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 216 SDLPNLEKLVLYV-GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp SBCTTCCEEEEEC-BCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred ccCCCCcEEEEec-cccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3678888888863 2110 0 00 0011111111123678888887765
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.69 E-value=0.00058 Score=50.59 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCCCcccEEEeeC-cccCCCCC----CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccC
Q 040713 25 HNLTSLQELKIGG-ELPSLEED----GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFP 95 (157)
Q Consensus 25 ~~l~~L~~L~l~~-~l~~lp~~----~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp 95 (157)
.++++|+.|++++ .+..++.- ...++|+.|++++ +.+. .+.+. ..+..+ +|++|.+.+ ++-...+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~-~~~~l-~~l~~l-~L~~L~L~~-Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELK-SEREL-DKIKGL-KLEELWLDG-NSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCC-SGGGG-GGGTTS-CCSEEECTT-STTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccC-Cchhh-hhcccC-CcceEEccC-CcCccccC
Confidence 3688899999998 77665431 1246899999987 4565 44220 023334 899999998 66444454
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.37 E-value=0.036 Score=43.04 Aligned_cols=74 Identities=11% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
.+|+.+.+.+ +++.++. .+.++++|+.+.+.+++..++...|. .+|+.+.+.+ .++ .++.. .+.++++|+.
T Consensus 203 ~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~--~i~-~I~~~--aF~~c~~L~~ 275 (401)
T 4fdw_A 203 AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPN--GVT-NIASR--AFYYCPELAE 275 (401)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEET--TCC-EECTT--TTTTCTTCCE
T ss_pred cccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCC--Ccc-EEChh--HhhCCCCCCE
Confidence 3555666643 3555543 33466666666666544444443332 4556665532 233 34333 4445555555
Q ss_pred EEE
Q 040713 82 LTI 84 (157)
Q Consensus 82 L~i 84 (157)
+.+
T Consensus 276 l~l 278 (401)
T 4fdw_A 276 VTT 278 (401)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.09 E-value=0.0012 Score=45.91 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=62.8
Q ss_pred CCCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccC-----CCCC-CCCCCccEEEecCCCCchh----hh
Q 040713 3 CAKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWIDGNKKIWK----SM 66 (157)
Q Consensus 3 ~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i~~c~~l~~----~l 66 (157)
.++|++|++++|..+. .+...+...++|++|++++ .+.. +... ...++|+.|++++| .+.. .+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHH
Confidence 3578899998863443 2445566778899999988 5432 1100 01257899999876 4431 12
Q ss_pred hhccccCCCCCccCEEEE--ecCCCCCcc-----cCcccccCCCCCCCCCccEEeeeCCh
Q 040713 67 IERGRGFHRFSSLRHLTI--SGCDDDMVS-----FPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 67 p~~~~~l~~l~~L~~L~i--~~~c~~l~~-----lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
.. .+...++|++|++ ++ +.+.. +-..++.- ++|++|++++|.
T Consensus 114 ~~---~L~~n~~L~~L~L~~~~--N~i~~~g~~~l~~~L~~n------~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VE---ALQSNTSLIELRIDNQS--QPLGNNVEMEIANMLEKN------TTLLKFGYHFTQ 162 (185)
T ss_dssp HH---GGGGCSSCCEEECCCCS--SCCCHHHHHHHHHHHHHC------SSCCEEECCCSS
T ss_pred HH---HHHhCCCceEEEecCCC--CCCCHHHHHHHHHHHHhC------CCcCEEeccCCC
Confidence 33 3566678999999 55 33332 11122222 578899988775
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.06 E-value=0.00039 Score=53.71 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=17.6
Q ss_pred CCccEEEecCCCCchh----hhhhccccCCCCCccCEEEEec
Q 040713 49 TNLHSLWIDGNKKIWK----SMIERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 49 ~~L~~L~i~~c~~l~~----~lp~~~~~l~~l~~L~~L~i~~ 86 (157)
++|+.|++++| .+.. .+.. .+...++|++|++++
T Consensus 155 ~~L~~L~Ls~n-~l~~~~~~~l~~---~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 155 CQITTLRLSNN-PLTAAGVAVLME---GLAGNTSVTHLSLLH 192 (372)
T ss_dssp CCCCEEECCSS-CCHHHHHHHHHH---HHHTCSSCCEEECTT
T ss_pred CccceeeCCCC-CCChHHHHHHHH---HHhcCCCcCEEeCCC
Confidence 45666666665 3320 1222 234456666666666
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.00 E-value=0.0069 Score=44.75 Aligned_cols=62 Identities=26% Similarity=0.425 Sum_probs=42.2
Q ss_pred CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713 49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
++|+.|+++++ .+. .++.....+..+++|+.|++++ +.+..+. .+..+.. + +|++|++.+++
T Consensus 170 ~~L~~L~Ls~N-~l~-~l~~l~~~~~~l~~L~~L~Ls~--N~i~~~~-~l~~l~~--l--~L~~L~L~~Np 231 (267)
T 3rw6_A 170 PELLSLNLSNN-RLY-RLDDMSSIVQKAPNLKILNLSG--NELKSER-ELDKIKG--L--KLEELWLDGNS 231 (267)
T ss_dssp TTCCEEECTTS-CCC-CCGGGTTHHHHSTTCCEEECTT--SCCCSGG-GGGGGTT--S--CCSEEECTTST
T ss_pred CCCCEEECCCC-CCC-CCccchhHHhhCCCCCEEECCC--CccCCch-hhhhccc--C--CcceEEccCCc
Confidence 48999999884 665 4432100345789999999998 6666552 3444421 1 89999999987
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.97 E-value=0.011 Score=38.78 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=32.9
Q ss_pred EEEeeC-ccc--CCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713 32 ELKIGG-ELP--SLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 32 ~L~l~~-~l~--~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~ 86 (157)
.++.++ .++ .+|. +++++|+.|++++ +.++ .+|.. .+..+++|+.|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~-N~l~-~l~~~--~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTG-NNLT-ALPPG--LLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTT-SCCS-SCCTT--TGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCC-CcCC-ccChh--hhhhccccCEEEecC
Confidence 455555 666 6664 3666777777766 4665 66664 566677777777776
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.88 E-value=0.0014 Score=50.60 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCcccEEEeeC-cccC-----CCCC-CCCCCccEEEecCCCCchh----hhhhccccCCCCCccCEEEEecCCCCCcc--
Q 040713 27 LTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWIDGNKKIWK----SMIERGRGFHRFSSLRHLTISGCDDDMVS-- 93 (157)
Q Consensus 27 l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i~~c~~l~~----~lp~~~~~l~~l~~L~~L~i~~~c~~l~~-- 93 (157)
.++|++|++++ .+.. +... ...++|++|++++|. +.. .+.. .+...++|++|++++ |. +..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~---~L~~~~~L~~L~Ls~-N~-i~~~g 227 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAA---QLDRNRQLQELNVAY-NG-AGDTA 227 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHH---HGGGCSCCCEEECCS-SC-CCHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHH---HHhcCCCcCeEECCC-CC-CCHHH
Confidence 46677777776 4432 1110 123579999998864 431 1233 356677899999998 53 332
Q ss_pred ---cCcccccCCCCCCCCCccEEeeeCCh
Q 040713 94 ---FPPELKYFPEKGLPSSLLQLWIWGCP 119 (157)
Q Consensus 94 ---lp~~l~~lp~~~l~~~L~~L~i~~c~ 119 (157)
+...++.. ++|++|++++|+
T Consensus 228 ~~~l~~~L~~~------~~L~~L~Ls~N~ 250 (372)
T 3un9_A 228 ALALARAAREH------PSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHC------SSCCEEECTTSS
T ss_pred HHHHHHHHHhC------CCCCEEeccCCC
Confidence 22222222 579999998875
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.85 E-value=0.19 Score=38.54 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=40.2
Q ss_pred CCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCC
Q 040713 26 NLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPE 103 (157)
Q Consensus 26 ~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~ 103 (157)
++++|+.+.+.+.+..++...|. .+|+.+.|.+ +++ .+... .+.+.++|+.+.+.. .++.+..
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~-~I~~~--aF~~C~~L~~i~ip~----------sv~~I~~ 350 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GIT-QILDD--AFAGCEQLERIAIPS----------SVTKIPE 350 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCC-EECTT--TTTTCTTCCEEEECT----------TCCBCCG
T ss_pred cccccccccCCCcccccCceeecCCCCcCEEEeCC--ccc-EehHh--HhhCCCCCCEEEECc----------ccCEEhH
Confidence 44555555554444444444333 3555555532 233 34333 445555566655543 4455544
Q ss_pred CCC--CCCccEEeeeCCh
Q 040713 104 KGL--PSSLLQLWIWGCP 119 (157)
Q Consensus 104 ~~l--~~~L~~L~i~~c~ 119 (157)
.++ ..+|+.+.+.+..
T Consensus 351 ~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECCce
Confidence 433 3678888887654
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.96 E-value=0.25 Score=37.44 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=6.8
Q ss_pred CCCCcccEEEeeC
Q 040713 25 HNLTSLQELKIGG 37 (157)
Q Consensus 25 ~~l~~L~~L~l~~ 37 (157)
....+|+.+.+..
T Consensus 237 ~~~~~L~~i~lp~ 249 (379)
T 4h09_A 237 YGMKALDEIAIPK 249 (379)
T ss_dssp TTCSSCCEEEECT
T ss_pred cCCccceEEEcCC
Confidence 3455555555544
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.54 E-value=0.2 Score=38.42 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=52.5
Q ss_pred CcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713 5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH 81 (157)
Q Consensus 5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~ 81 (157)
+|+.+.+.. .++.+++ .+.++.+|+.+.|.+.++.+....|. .+|+.+.|-. .++ .+... .+.+.++|+.
T Consensus 289 ~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~-~I~~~--aF~~C~~L~~ 361 (394)
T 4gt6_A 289 ALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVT-KIPES--AFSNCTALNN 361 (394)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCC-BCCGG--GGTTCTTCCE
T ss_pred ccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccC-EEhHh--HhhCCCCCCE
Confidence 344444432 3445554 44678999999998767777766664 6899999953 465 66655 6888899999
Q ss_pred EEEec
Q 040713 82 LTISG 86 (157)
Q Consensus 82 L~i~~ 86 (157)
+.+.+
T Consensus 362 i~~~~ 366 (394)
T 4gt6_A 362 IEYSG 366 (394)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99986
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.12 E-value=0.17 Score=32.83 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.4
Q ss_pred cCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCC
Q 040713 15 KRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGN 59 (157)
Q Consensus 15 ~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c 59 (157)
.+++ .+|..+ .++|+.|+|++ .|..++.+.| .++|+.|+|.++
T Consensus 18 ~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 18 RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3566 777653 34799999999 9999998764 368999999874
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.60 E-value=0.41 Score=36.58 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=54.3
Q ss_pred ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCccccc
Q 040713 23 GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKY 100 (157)
Q Consensus 23 ~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~ 100 (157)
.+....+|+.+.+.+.++.++...|. ++|+.+.|.+ .++ .+... .+.+.++|+.+.+.. .++.
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~-~I~~~--aF~~c~~L~~i~lp~----------~l~~ 356 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVE-EIGKR--SFRGCTSLSNINFPL----------SLRK 356 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCC-EECTT--TTTTCTTCCEECCCT----------TCCE
T ss_pred cccccccccccccccccceechhhhcCCCCCCEEEeCC--ccc-EEhHH--hccCCCCCCEEEECc----------cccE
Confidence 34578899999988766666666554 5888888853 455 66554 577778888887754 3444
Q ss_pred CCCCCC--CCCccEEeeeC
Q 040713 101 FPEKGL--PSSLLQLWIWG 117 (157)
Q Consensus 101 lp~~~l--~~~L~~L~i~~ 117 (157)
+...++ ..+|+.+.+..
T Consensus 357 I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEG
T ss_pred ehHHHhhCCCCCCEEEECC
Confidence 444322 36899998854
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.45 E-value=0.56 Score=35.48 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=49.8
Q ss_pred CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713 4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR 80 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~ 80 (157)
.+|+.+.+.. .++.+.. .+.+..+|+.+.+...+..++...|. ++|+.+.+.+ ..++ .++.. .+.+.++|+
T Consensus 240 ~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~-~~i~-~I~~~--aF~~c~~L~ 313 (379)
T 4h09_A 240 KALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN-SAIE-TLEPR--VFMDCVKLS 313 (379)
T ss_dssp SSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECC-TTCC-EECTT--TTTTCTTCC
T ss_pred ccceEEEcCC--CccEeCccccceeehhccccccccceeccccccccccccccccccc-cccc-eehhh--hhcCCCCCC
Confidence 3455555543 3444443 34578889999887766666655443 5899988865 3455 56554 577778888
Q ss_pred EEEEec
Q 040713 81 HLTISG 86 (157)
Q Consensus 81 ~L~i~~ 86 (157)
.+.+..
T Consensus 314 ~i~lp~ 319 (379)
T 4h09_A 314 SVTLPT 319 (379)
T ss_dssp EEECCT
T ss_pred EEEcCc
Confidence 887754
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.75 E-value=0.039 Score=38.00 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccC-----CCCC-CCCCCccEEEe--cCCCCchhh----
Q 040713 4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWI--DGNKKIWKS---- 65 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i--~~c~~l~~~---- 65 (157)
++|++|++++|. +. .+...+...++|++|++++ .+.. +... ...++|+.|++ +++ .+...
T Consensus 65 ~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~ 142 (185)
T 1io0_A 65 TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEME 142 (185)
T ss_dssp CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHH
T ss_pred CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHH
Confidence 689999999974 43 2344555678899999998 5543 1111 12258999999 554 44311
Q ss_pred hhhccccCCCCCccCEEEEec
Q 040713 66 MIERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 66 lp~~~~~l~~l~~L~~L~i~~ 86 (157)
+.. .+...++|++|++++
T Consensus 143 l~~---~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 143 IAN---MLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHH---HHHHCSSCCEEECCC
T ss_pred HHH---HHHhCCCcCEEeccC
Confidence 222 344568899999998
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.38 E-value=1.4 Score=33.65 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=45.3
Q ss_pred ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccc
Q 040713 23 GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK 99 (157)
Q Consensus 23 ~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~ 99 (157)
.+....+++.+.... .+ +...+ -.+|+.+.+.+ +++ .+... .+.+.++|+.+.+.. .++
T Consensus 271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~--~i~-~I~~~--aF~~c~~L~~i~lp~----------~v~ 332 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD--SVK-FIGEE--AFESCTSLVSIDLPY----------LVE 332 (394)
T ss_dssp TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT--TCC-EECTT--TTTTCTTCCEECCCT----------TCC
T ss_pred ccccccccceeccCceee---cccccccccccccccccc--ccc-eechh--hhcCCCCCCEEEeCC----------ccc
Confidence 345677777777665 32 22222 25888888854 465 66654 577778888887754 334
Q ss_pred cCCCCCC--CCCccEEeee
Q 040713 100 YFPEKGL--PSSLLQLWIW 116 (157)
Q Consensus 100 ~lp~~~l--~~~L~~L~i~ 116 (157)
.+...++ ..+|+.+.+.
T Consensus 333 ~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp EECTTTTTTCTTCCEECCC
T ss_pred EEhHHhccCCCCCCEEEEC
Confidence 4433322 2567777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.77 E-value=1.4 Score=30.78 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=42.0
Q ss_pred CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccCCCCCC------CCCCccEEEecCCCCchh----hhh
Q 040713 4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPSLEEDG------LPTNLHSLWIDGNKKIWK----SMI 67 (157)
Q Consensus 4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~lp~~~------~~~~L~~L~i~~c~~l~~----~lp 67 (157)
+.|+.|++++++.+. .+-+.+..-+.|+.|+|++ .+..--... .-++|+.|+++++ .+.. .+-
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence 467777776642332 2334455566778888877 443211110 1146788888664 3320 111
Q ss_pred hccccCCCCCccCEEEEec
Q 040713 68 ERGRGFHRFSSLRHLTISG 86 (157)
Q Consensus 68 ~~~~~l~~l~~L~~L~i~~ 86 (157)
+ .+..=++|++|++++
T Consensus 120 ~---aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 R---STLVTQSIVEFKADN 135 (197)
T ss_dssp H---HTTTTCCCSEEECCC
T ss_pred H---HHhhCCceeEEECCC
Confidence 2 344445678888775
Done!