BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040718
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1
Length = 457
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 163/353 (46%), Gaps = 108/353 (30%)
Query: 6 ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFP--LKFPGLDL 59
I+VD W+ G++++FL+H+HSDHT GLSS W+R PL+CS LTA+L LK P
Sbjct: 11 IAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRLKVP---T 66
Query: 60 SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTG 119
IR L++G H++ GE+ V V +DANHCPG SVM LF G FG +LYTG
Sbjct: 67 RWIRPLEVGQSHAV-------GEE--VTVTLLDANHCPG----SVMFLFEGAFGTILYTG 113
Query: 120 DFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQ-------- 171
DFR+ + +R AL +D LYLDNT C A PSR AA Q
Sbjct: 114 DFRYSPAMQRE--------PALSGRRIDRLYLDNTNCRPHGALPSRSRAALQAAQLIRRH 165
Query: 172 ----------------------------IWVWPERLQTMHLLGFHDIFTTKTSLTRVRAV 203
+ V P RL+ M LL ++FTT+ R+ AV
Sbjct: 166 PQHRVVIGVYSLGKEELLVDLALEFGTWVVVSPSRLEQMRLLELPEVFTTEEGAGRIHAV 225
Query: 204 PRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQT 263
DTL S N +HPTI I+P+G P
Sbjct: 226 DVAEIRWDTLVSWNVLHPTIAILPTGRP-------------------------------- 253
Query: 264 EKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCY 316
V H I+ +PYSDHS F+E+ EF+ ++P ++ IV CY
Sbjct: 254 ---------VKVTHPQIHLIPYSDHSSFSELCEFVKWLKPCSVIPIVKGDMCY 297
>sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1
Length = 571
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 177/404 (43%), Gaps = 106/404 (26%)
Query: 6 ISVDRWTEGS----QVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSL 61
I+VD W +++FL+H+HSDHT GLSS W+ P++CS LTAKL LK +
Sbjct: 11 IAVDCWQLRKCLHVRLFFLSHMHSDHTCGLSSTWSHRPIYCSPLTAKLLRLKL-QIKQKW 69
Query: 62 IRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDF 121
IR L+IG H + + K + V IDANHCPG +VM LF+G FG LYTGDF
Sbjct: 70 IRPLEIGQDHMLML---DDLGKERLTVNLIDANHCPG----AVMFLFQGYFGTRLYTGDF 122
Query: 122 RWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI--------- 172
R+ S R +N + +D+LYLDNT C+ + A PSR+ A QQI
Sbjct: 123 RYTPSMLRVPCLQNHI-------NIDVLYLDNTNCDPTRALPSRQQATQQIKQIIRDHPG 175
Query: 173 -------------------------WVWP--ERLQTMHLLGFHDIFTTKTSLTRVRAVPR 205
WV ERL+T+ +L D+FTT + R+R V +
Sbjct: 176 YAVVIGLYSLGKESLLVDLAMEFKTWVEVDRERLETLRVLQLPDVFTTDSGAGRIRVVNQ 235
Query: 206 YSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEK 265
S L + N + TI I+P+ P V
Sbjct: 236 SMISASNLMAWNKLQSTIAILPTSRPMV-------------------------------- 263
Query: 266 LKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGR 325
H +Y VPYSDHS + E+E+F++ + P ++ IV + L YF
Sbjct: 264 ---------SCHPNVYVVPYSDHSSYQELEDFVSALSPISLVPIVGNC------LPYFSS 308
Query: 326 LCRANQPPLRYKQEKRVQHKTVVAAQIKFNVESGRSAKVDRKRR 369
L + P + V+ + + N+ S + + R R
Sbjct: 309 LLSPRKKPKAVVIPESVKQYMMTNS----NIRSSTNGMIQRTSR 348
>sp|Q8C7W7|DCR1B_MOUSE 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2
Length = 541
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 156/350 (44%), Gaps = 97/350 (27%)
Query: 6 ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSL 61
I+VD W+ ++++FLTH+H DHT GLSS WAR PL+CS +TA L + +
Sbjct: 11 IAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWAR-PLYCSPITACLLHRRL-QVSKHW 68
Query: 62 IRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDF 121
IR L++G H + + G++T V IDANHCPG SVM LF G FG +LYTGDF
Sbjct: 69 IRALEVGESHVLPL--DEIGQETMT-VTLIDANHCPG----SVMFLFEGYFGTILYTGDF 121
Query: 122 RWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI--------- 172
R+ S + L+ + + LYLDNT CN + PSR+ A QQI
Sbjct: 122 RYTPSM----LKEPALILGKQ---IHTLYLDNTNCNPALVLPSRQEATQQIVQLIRQFPQ 174
Query: 173 -------------------------WVW--PERLQTMHLLGFHDIFTTKTSLTRVRAVPR 205
WV P+RL+ + LLG D+FT + R+ AV
Sbjct: 175 HNIKIGLYSLGKESLLEQLALEFRTWVVLSPQRLELVQLLGLADVFTVEEEAGRIHAVDH 234
Query: 206 YSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEK 265
+ N HPTI I P+ + K
Sbjct: 235 TEICHSAMLQWNQSHPTIAIFPT----------------------------------SRK 260
Query: 266 LKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSC 315
++ H IY+VPYSDHS ++E+ F+ ++P + IV C
Sbjct: 261 VRSP-------HPSIYTVPYSDHSSYSELRAFVAALRPCQVVPIVHQKPC 303
>sp|Q4KLY6|DCR1B_RAT 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=2 SV=2
Length = 541
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 156/350 (44%), Gaps = 97/350 (27%)
Query: 6 ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSL 61
I+VD W+ ++++FL+H+H DHT GLSS WAR PL+CS +TA L + +
Sbjct: 11 IAVDFWSLRRAGTARLFFLSHMHCDHTVGLSSTWAR-PLYCSPITAHLLHRRL-QVSKQW 68
Query: 62 IRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDF 121
IR L+IG H + + G++T V IDANHCPG SVM LF G FG +LYTGDF
Sbjct: 69 IRALEIGESHVL--LLDEIGQETMT-VTLIDANHCPG----SVMFLFEGYFGTILYTGDF 121
Query: 122 RWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI--------- 172
R+ S + TL K + LYLDNT CN + PSR+ A QQI
Sbjct: 122 RYTPSMLKEPA--LTLGKQ-----IHTLYLDNTNCNPALVLPSRQEATQQIIQLIRQFPQ 174
Query: 173 -------------------------WVW--PERLQTMHLLGFHDIFTTKTSLTRVRAVPR 205
WV P+RL+ + LLG D+FT + R+ AV
Sbjct: 175 HNIKIGLYSLGKESLLEQLALEFQTWVVLSPQRLELVQLLGLADVFTVEEEAGRIHAVDH 234
Query: 206 YSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEK 265
+ N HPTI I P+ + K
Sbjct: 235 MEICHSAMLQWNQTHPTIAIFPT----------------------------------SRK 260
Query: 266 LKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSC 315
++ H IYS+PYSDHS ++E+ F+ ++P + IV C
Sbjct: 261 IRSP-------HPSIYSIPYSDHSSYSELRAFVAALRPCQVVPIVREQPC 303
>sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3
SV=1
Length = 529
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 158/352 (44%), Gaps = 101/352 (28%)
Query: 6 ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLF--PLKFPGLDL 59
I+VD W+ ++++FL+H+HSDHT GLSS WAR PL+CS +TA L L+ P
Sbjct: 11 IAVDFWSLRRAGSARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAYLVHRHLQVPK--- 66
Query: 60 SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTG 119
IR L++G H + + G +T V +DANHCPG SVM LF G FG +LYTG
Sbjct: 67 EWIRALEVGESHVLPL--DEIGRETMT-VTLMDANHCPG----SVMFLFEGYFGTILYTG 119
Query: 120 DFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI------- 172
DFR+ S + + +K K + LYLDNT CN ++ PSR+ AA+QI
Sbjct: 120 DFRYTPS-----MLKEPALKLGKQ--IHTLYLDNTNCNPAWVLPSRQEAARQIVELIRKH 172
Query: 173 ---------------------------WVW--PERLQTMHLLGFHDIFTTKTSLTRVRAV 203
WV P RL+ + LLG D+FT + R+ AV
Sbjct: 173 PQHNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLADVFTLEEKAGRIHAV 232
Query: 204 PRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQT 263
+ N HPTI I+P+
Sbjct: 233 DHMEICHSAMLHWNQTHPTIAILPTS---------------------------------- 258
Query: 264 EKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSC 315
+ R H I+ +PYSDHS ++E+ F+ ++P + IVS C
Sbjct: 259 -------RKIHRSHPDIHIIPYSDHSSYSELRTFVAALKPCQVVPIVSRQPC 303
>sp|Q9H816|DCR1B_HUMAN 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1
Length = 532
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 153/350 (43%), Gaps = 97/350 (27%)
Query: 6 ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSL 61
I+VD W+ ++++FL+H+HSDHT GLSS WAR PL+CS +TA L +
Sbjct: 11 IAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHL-QVSKQW 68
Query: 62 IRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDF 121
I+ L++G H + + G++T V +DANHCPG SVM LF G FG +LYTGDF
Sbjct: 69 IQALEVGESHVLPL--DEIGQETMT-VTLLDANHCPG----SVMFLFEGYFGTILYTGDF 121
Query: 122 RWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI--------- 172
R+ S + TL K + LYLDNT CN + PSR+ AA QI
Sbjct: 122 RYTPSMLKEPA--LTLGKQ-----IHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRKHPQ 174
Query: 173 -------------------------WVW--PERLQTMHLLGFHDIFTTKTSLTRVRAVPR 205
WV P RL+ + LLG D+FT + R+ AV
Sbjct: 175 HNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLADVFTVEEKAGRIHAVDH 234
Query: 206 YSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEK 265
+ N HPTI I+P+
Sbjct: 235 MEICHSNMLRWNQTHPTIAILPTS------------------------------------ 258
Query: 266 LKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSC 315
+ H I+ +PYSDHS ++E+ F+ ++P + IVS C
Sbjct: 259 -----RKIHSSHPDIHVIPYSDHSSYSELRAFVAALKPCQVVPIVSRRPC 303
>sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1
SV=2
Length = 1026
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 147/324 (45%), Gaps = 64/324 (19%)
Query: 13 EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHS 72
EG YFLTH HSDH GLS + R P++CS +T L K + IR L + +
Sbjct: 709 EGCTAYFLTHFHSDHYAGLSKDFTR-PVYCSEITGNLLKKKL-RVQEQYIRQLPMDTECV 766
Query: 73 ISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGC-LLYTGDFRWEASNERAE 131
+ V+V+ +DANHCPG + M+LF+ G +L+TGDFR + S ER+
Sbjct: 767 VDS----------VKVVLLDANHCPG----ATMILFQLPNGAVILHTGDFRADPSMERSR 812
Query: 132 I-GRNTLVKALKDDVVDILYLDNTYCNSSYAFPSRE--------VAAQQIWVWPERL--- 179
+ GR V L+LD TYC+ Y FPS++ A + + + P L
Sbjct: 813 LAGRK----------VHTLFLDTTYCSPEYTFPSQQEVIQFAINTAFEAVTLNPRALVVC 862
Query: 180 ------QTMHLLGFHDIFTTKTSLTRVR-------AVPRYS--FSIDTLESLNTMHPTIG 224
+ L D+ +K +++ + +P S + D +SL + P +
Sbjct: 863 GTYCIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEVSSLITTDMCDSLVHLLPMMQ 922
Query: 225 IMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSV--DRFHKYIYS 282
I GL +K K GG L +R TG T + + + R + IY
Sbjct: 923 INFKGLQSHLK--KCGGKYDQIL------AFRPTGWTHSNNITSTADIIPQTRGNISIYG 974
Query: 283 VPYSDHSCFTEIEEFLNLVQPSNI 306
+PYS+HS + E++ F+ ++P I
Sbjct: 975 IPYSEHSSYLEMKRFVQWLKPQKI 998
>sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3
Length = 1040
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 145/323 (44%), Gaps = 62/323 (19%)
Query: 13 EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHS 72
EG YFLTH HSDH GLS + P++CS +T L K + I L + +
Sbjct: 723 EGCTAYFLTHFHSDHYAGLSKHFTF-PVYCSEITGNLLKNKL-HVQEQYIHPLPLDTECI 780
Query: 73 ISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGC-LLYTGDFRWEASNERAE 131
++ V +V+ +DANHCPG +VM+LF G +L+TGDFR + S ER+
Sbjct: 781 VNGV----------KVVLLDANHCPG----AVMILFYLPNGTVILHTGDFRADPSMERS- 825
Query: 132 IGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSRE--------VAAQQIWVWPERL---- 179
L D V +LYLD TYC+ Y FPS++ A + + + P L
Sbjct: 826 --------LLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCG 877
Query: 180 -----QTMHLLGFHDIFTTKTSLTRVR-------AVPRYS--FSIDTLESLNTMHPTIGI 225
+ L D+ +K +++ + +P + + D SL + P + I
Sbjct: 878 TYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQI 937
Query: 226 MPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSV--DRFHKYIYSV 283
GL +K K GG L +R TG T + K + + + IY +
Sbjct: 938 NFKGLQSHLK--KCGGKYNQIL------AFRPTGWTHSNKFTRIADVIPQTKGNISIYGI 989
Query: 284 PYSDHSCFTEIEEFLNLVQPSNI 306
PYS+HS + E++ F+ ++P I
Sbjct: 990 PYSEHSSYLEMKRFVQWLKPQKI 1012
>sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1
PE=2 SV=1
Length = 484
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 155/328 (47%), Gaps = 53/328 (16%)
Query: 13 EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHS 72
+G YFLTH H+DH GL+ AW+ GP++CS LT++L ++ S I L++ ++
Sbjct: 167 QGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLL-RLSLSVNPSSIHPLELDVEYT 225
Query: 73 ISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEI 132
I+ ++V I+ANHCPG LL D C L+TGDFR + +
Sbjct: 226 ING----------IKVTLIEANHCPGAALIHFRLL---DGTCYLHTGDFRASKQMQTHPL 272
Query: 133 GRNTLVKALKDDVVDILYLDNTYCNSSYAFPSRE-VAAQQIWVWPERL----QTMHLLGF 187
L + V +LYLD TYCN Y FPS+E V + + + + L +T+ ++G
Sbjct: 273 --------LFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGS 324
Query: 188 HDIFTTKTSLTRVRAVP------------RYSFSIDTLE---SLNTMHPTIGIMPSG--- 229
+ I L +A+ SF D + S + + ++P
Sbjct: 325 YSIGKECVYLAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLK 384
Query: 230 LPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSV---DRFHKYIYSVPYS 286
+ + + LK G++ + +R TG T +EK+ E L + R IY VPYS
Sbjct: 385 VERLDEHLKIYREQYGAVLA-----FRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYS 439
Query: 287 DHSCFTEIEEFLNLVQPSNIRGIVSSSS 314
+HS FTE+ EF+ ++P I V++ +
Sbjct: 440 EHSSFTELREFVQFLRPDKIIPTVNNGN 467
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1
SV=1
Length = 972
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 47/316 (14%)
Query: 13 EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHS 72
EG YFLTH HSDH GL+ + PL+C+++T L K + I VL + +
Sbjct: 652 EGCTAYFLTHFHSDHYCGLTKNFVF-PLYCNKITGNLVKSKL-RVKEQYINVLPMDTECI 709
Query: 73 ISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFG-CLLYTGDFRWEASNERAE 131
++ ++V+ +DANHCPG + M+LF G +L+TGDFR + S ER
Sbjct: 710 VN----------GIKVLLLDANHCPG----ATMILFYLPSGTAILHTGDFRADPSMER-- 753
Query: 132 IGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSRE--------VAAQQIWVWPERL---- 179
AL + LYLD TYC+ Y FPS++ A + + + P L
Sbjct: 754 ------YPALIGQKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVTLNPRTLVVCG 807
Query: 180 -----QTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVV 234
+ L ++ +K S++R + + SL TM+ G + LP +
Sbjct: 808 TYSIGKEKVFLAIAEVLGSKASMSRDKYKTLQCLESAAVNSLITMN-WDGTLLHILPMMQ 866
Query: 235 KPLKGGGSLPGSLFSSYQS--KWRATGGTQTEKLKEALG--SVDRFHKYIYSVPYSDHSC 290
KG ++ ++ TG T ++ + R + IY +PYS+HS
Sbjct: 867 INFKGLQDHLNKFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQTRGNITIYGIPYSEHSS 926
Query: 291 FTEIEEFLNLVQPSNI 306
+ E++ F+ ++P I
Sbjct: 927 YLEMKRFVQWLKPQKI 942
>sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum
GN=dclre1 PE=3 SV=1
Length = 920
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 44/319 (13%)
Query: 18 YFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVS 77
YFLTH HSDH G++ W+ G ++C+ T KL K G+D R + W+ + +
Sbjct: 286 YFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKL-GVDQ---RYIVKCEWNKLIEIQ 341
Query: 78 PSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFG------CLLYTGDFRWEASNERAE 131
V+V +D+NHCPG ++ R G +L+TGDFR+ S
Sbjct: 342 G-------VKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYP 394
Query: 132 IGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERL---QTMHLLGFH 188
+ LK + LYLDNTYC+ Y FP + +Q+ + +T+ L G +
Sbjct: 395 L--------LKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTY 446
Query: 189 DIFTTKTSLTRVRAVPR-YSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKG-GGSLPG- 245
I + L + + S + L + + I ++ P + S+
Sbjct: 447 VIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSY 506
Query: 246 ----SLFSSYQSKW------RATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIE 295
SL S +K+ R TG TQ K+++ ++R YSV YS+HS F E+
Sbjct: 507 HNMLSLLDSSNNKYKRVIGFRPTGWTQA---KKSITYLNRGPTTFYSVAYSEHSSFNELR 563
Query: 296 EFLNLVQPSNIRGIVSSSS 314
+ ++ +P+ I V S
Sbjct: 564 DCIDHFRPTQIIPTVDCDS 582
>sp|Q5XIX3|DCR1C_RAT Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=2 SV=1
Length = 698
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 162/381 (42%), Gaps = 78/381 (20%)
Query: 2 EKGLISVDRWTE---GSQVYFLTHLHSDHTQGLSSAWARGPL--------FCSRLTAKLF 50
E IS+DR+ ++ YFL+H H DH +GL + + L +CS +T +L
Sbjct: 10 EYPTISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKELL 69
Query: 51 PLKFPGLDL--SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLF 108
L P + I ++I + +S+V +SGEK V V + A HCPG SVM LF
Sbjct: 70 -LTSPKYKFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPAGHCPG----SVMFLF 124
Query: 109 RGDFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNSS-YAFPS 164
+G G +LYTGDFR + E+ R L+ + +KD + +YLD T+C+ Y PS
Sbjct: 125 QGSNGTVLYTGDFRL----AKGEVSRMELLHSGGRVKD--IQSVYLDTTFCDPRFYQIPS 178
Query: 165 REVAAQQI------W--------VWPERLQTMHLLGFHDIFTTKTS----LTRVRAVPRY 206
RE + + W VW L G+ +FT + V + +
Sbjct: 179 REECLRGVLELVRSWITRSPKHVVW---LNCKAAYGYEYLFTNLSEELGVQVHVDKLDMF 235
Query: 207 SFSIDTLESLNT---------MHPTI------GIMPSGLPWVVKPLKGGGSLPGSLFSSY 251
D L L T HP +P G+ K + S+ S
Sbjct: 236 KNMPDILHHLTTDRNTQIHACRHPKAEEYFQWNKLPCGMASKTKTVLHTISIKPSTM--- 292
Query: 252 QSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVS 311
W G +T K + R + Y +S HS ++EI++FL+ + P N V
Sbjct: 293 ---WF---GERTRK----TNVIVRTGESSYRACFSFHSSYSEIKDFLSYICPVNAYPNVI 342
Query: 312 SSSCYVDPLYYFGR-LCRANQ 331
VD + F + LCR++Q
Sbjct: 343 PIGLTVDKVMDFLKPLCRSSQ 363
>sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c PE=2 SV=2
Length = 705
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 158/379 (41%), Gaps = 74/379 (19%)
Query: 2 EKGLISVDRWTE---GSQVYFLTHLHSDHTQGLSSAWARGP-------------LFCSRL 45
E IS+DR+ ++ YFL+H H DH +GL R P L+CS +
Sbjct: 10 EYPTISIDRFDRENLKARAYFLSHCHKDHMKGL-----RAPSLKRRLECSLKVFLYCSPV 64
Query: 46 TAKLFPLKFPGLDL--SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCS 103
T +L L P + I ++I + IS+V +SGEK V V + A HCPG S
Sbjct: 65 TKELL-LTSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPG----S 119
Query: 104 VMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNSS- 159
VM LF+G G +LYTGDFR + E R L+ + +KD + +YLD T+C+
Sbjct: 120 VMFLFQGSNGTVLYTGDFRL----AKGEASRMELLHSGGRVKD--IQSVYLDTTFCDPRF 173
Query: 160 YAFPSREVAAQQI------W--------VWPERLQTMHLLGFHDIFTTKTS----LTRVR 201
Y PSRE + I W VW L G+ +FT + V
Sbjct: 174 YQIPSREQCLRGILELVRSWVTRSPHHVVW---LNCKAAYGYEYLFTNLSEELGVQVHVD 230
Query: 202 AVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATG-- 259
+ + D L L T T I P + + LP + S ++
Sbjct: 231 KLDMFKNMPDILHHLTTDRNT-QIHACRHPKAEECFQ-WNKLPCGITSQNKTALHTISIK 288
Query: 260 ------GTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSS 313
G +T K + R + Y +S HS F+EI++FL+ + P N+ V
Sbjct: 289 PSTMWFGERTRK----TNVIVRTGESSYRACFSFHSSFSEIKDFLSYICPVNVYPNVIPV 344
Query: 314 SCYVDPLY-YFGRLCRANQ 331
VD + LCR+ Q
Sbjct: 345 GLTVDKVMDVLKPLCRSPQ 363
>sp|Q5R6Z9|DCR1C_PONAB Protein artemis OS=Pongo abelii GN=DCLRE1C PE=2 SV=1
Length = 692
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 28/182 (15%)
Query: 2 EKGLISVDRWTEG---SQVYFLTHLHSDHTQGLSSAWARGPL--------FCSRLTAKLF 50
E IS+DR+ ++ YFL+H H DH +GL + + L +CS +T +L
Sbjct: 10 EYPTISIDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELL 69
Query: 51 PLKFPGLDLSLIRVL--DIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLF 108
L P R++ +I + IS+V +SGEK + V + A HCPG SVM LF
Sbjct: 70 -LTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPG----SVMFLF 124
Query: 109 RGDFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNSS-YAFPS 164
+G+ G +LYTGDFR + E R L+ + +KD + +YLD T+C+ Y PS
Sbjct: 125 QGNNGTVLYTGDFRL----AQGEAARMELLHSGGRIKD--IQSVYLDTTFCDPRFYQIPS 178
Query: 165 RE 166
RE
Sbjct: 179 RE 180
>sp|Q5QJC2|DCR1C_CHICK Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1
Length = 714
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 28/178 (15%)
Query: 6 ISVDRWTEG---SQVYFLTHLHSDHTQGLSSAWARG--------PLFCSRLTAKLF--PL 52
+S+DR+ ++ YFL+H H DH +GL + R L+CS +T +L
Sbjct: 14 LSIDRFDYDNLRARAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKELLLTNS 73
Query: 53 KFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDF 112
K+ + ++ L++ + IS+V ++GEK +EV + A HCPG SVM LF+G+
Sbjct: 74 KYAFWENHIV-ALEVETPTQISLVDETTGEKEDIEVTLLPAGHCPG----SVMFLFQGEN 128
Query: 113 GCLLYTGDFRWEASNERAEIGRNTLV---KALKDDVVDILYLDNTYCNSS-YAFPSRE 166
G +LYTGDFR + E R L+ ++KD + +YLD T+C+ Y PSRE
Sbjct: 129 GTVLYTGDFRL----AKGEAARMELLHSGTSVKD--IQSVYLDTTFCDPRFYHIPSRE 180
>sp|Q96SD1|DCR1C_HUMAN Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2
Length = 692
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 28/182 (15%)
Query: 2 EKGLISVDRWTEG---SQVYFLTHLHSDHTQGLSSAWARGPL--------FCSRLTAKLF 50
E IS+DR+ ++ YFL+H H DH +GL + + L +CS +T +L
Sbjct: 10 EYPTISIDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELL 69
Query: 51 PLKFPGLDLSLIRVL--DIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLF 108
L P R++ +I + IS+V +SGEK + V + A HCPG SVM LF
Sbjct: 70 -LTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPG----SVMFLF 124
Query: 109 RGDFGCLLYTGDFRWEASNERAEIGRNTLVKA---LKDDVVDILYLDNTYCNSS-YAFPS 164
+G+ G +LYTGDFR + E R L+ + +KD + +YLD T+C+ Y PS
Sbjct: 125 QGNNGTVLYTGDFRL----AQGEAARMELLHSGGRVKD--IQSVYLDTTFCDPRFYQIPS 178
Query: 165 RE 166
RE
Sbjct: 179 RE 180
>sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3
Length = 560
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 13 EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHS 72
+G + YFL+H HSDH GL+ W GP++CS +T L + +D ++ L + ++
Sbjct: 206 DGVEAYFLSHFHSDHYGGLTPKWKHGPIYCSEVTGNLL-INVMHVDEQYVKRLKLNQPYN 264
Query: 73 ISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFR----GDFGCLLYTGDFRWEASNE 128
I ++ V +DANHCPG S M +F +L+ GDFR AS +
Sbjct: 265 IMGIT----------VYVLDANHCPG----SAMFVFETLQSNQTRRVLHCGDFR--ASKD 308
Query: 129 RAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQ 170
+ + L++ + +YLD TY N Y FP + Q
Sbjct: 309 ------HVMHPVLREKTIHKVYLDTTYLNPKYTFPPQADVVQ 344
>sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1
Length = 661
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 32/177 (18%)
Query: 18 YFLTHLHSDHTQGLSSAWA-------RGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSW 70
YFL+H HSDH GL +W + L+CS++TA L LKF + + I++L +
Sbjct: 244 YFLSHFHSDHYIGLKKSWNNPDENPIKKTLYCSKITAILVNLKF-KIPMDEIQILPMNKR 302
Query: 71 HSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGC--------LLYTGDFR 122
I+ + V+ +DANHCPG ++++LF+ +L+TGDFR
Sbjct: 303 FWITDT---------ISVVTLDANHCPG----AIIMLFQEFLANSYDKPIRQILHTGDFR 349
Query: 123 WEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERL 179
SN + + ++ +D +YLD TY Y FPS+ + + + RL
Sbjct: 350 ---SNAKMIETIQKWLAETANETIDQVYLDTTYMTMGYNFPSQHSVCETVADFTLRL 403
>sp|Q5RGE5|DCR1C_DANRE Protein artemis OS=Danio rerio GN=dclre1c PE=2 SV=1
Length = 639
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 87/183 (47%), Gaps = 34/183 (18%)
Query: 6 ISVDRWTEG---SQVYFLTHLHSDHTQGLSSAWARGPL-------------FCSRLTAKL 49
IS+DR+ ++ YFL+H H DH +GL +GPL +CS +T +L
Sbjct: 14 ISLDRFDRENLHARAYFLSHCHKDHMKGL-----KGPLLKRKLKFSLTVKLYCSYVTKEL 68
Query: 50 FPLKFPGLDL--SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLL 107
L P I L++ S SIS++ S+GE V V + A HCPG SVM L
Sbjct: 69 L-LSNPRYAFWEDHIVPLELDSPTSISLIDESTGETEDVVVTLLSAGHCPG----SVMFL 123
Query: 108 FRGDFGCLLYTGDFRWEASN-ERAE-IGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSR 165
F G G +LYTGDFR + R E + VK ++ +D + D Y Y PSR
Sbjct: 124 FEGAKGTVLYTGDFRLAVGDAARMEYLHSGDRVKDIQSVYIDTTFFDPKY----YQIPSR 179
Query: 166 EVA 168
E
Sbjct: 180 EAC 182
>sp|B1ZZL9|DNLI_OPITP Probable DNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1)
GN=lig PE=3 SV=1
Length = 1017
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 31/146 (21%)
Query: 19 FLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIR-VLDIGSWHSISVVS 77
F++H HSDHT + CS TA L + LD I VL G ++
Sbjct: 30 FVSHAHSDHTA------THDEILCSAGTAALMRAR---LDAKRIEHVLPFGQTEQLTAD- 79
Query: 78 PSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTL 137
V A H I G + LL G+ G LLYTGDF+ + R
Sbjct: 80 --------CGVTLHPAGH---IFGSAQCLLEHGEHGSLLYTGDFK---------LRRGRS 119
Query: 138 VKALKDDVVDILYLDNTYCNSSYAFP 163
+ +++ ++ T+ Y FP
Sbjct: 120 AEPCATPHAELVIMETTFGRPHYVFP 145
>sp|A2Q9N1|CREB_ASPNC Probable ubiquitin carboxyl-terminal hydrolase creB OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=creB PE=3 SV=2
Length = 758
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 335 RYKQEKRV-QHKTVVAAQIKFNVESGRSAKVDRKRRRTAEVGVLGVHMSKVDALRRARRG 393
R +QE RV +++ A++K +E+ +++K D RR E G G + L R +RG
Sbjct: 602 RKEQEARVKENQRREEAELKAALEASKASKADEDRRNPTENGKDGDPKRSSNGLSRLKRG 661
Query: 394 AK 395
+K
Sbjct: 662 SK 663
>sp|P16692|PHNP_ECOLI Protein PhnP OS=Escherichia coli (strain K12) GN=phnP PE=1 SV=1
Length = 252
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 8 VDRWTEGS-QVYFLTHLHSDHTQGL 31
DRW+ GS Q + LTH H DH QGL
Sbjct: 61 ADRWSPGSFQQFLLTHYHMDHVQGL 85
>sp|Q2L2S3|RSMG_BORA1 Ribosomal RNA small subunit methyltransferase G OS=Bordetella avium
(strain 197N) GN=rsmG PE=3 SV=1
Length = 224
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 196 SLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKW 255
+LT +R P +SL+ + P + + +G P V + GG LPG + + Q +W
Sbjct: 48 NLTAIRD-PEQMLIQHLFDSLSVVQPLVRALQAGQPAKVYDVGSGGGLPGVVLAIVQPEW 106
Query: 256 RATGGTQTEK----LKEALGS-----VDRFHKYIYSVPYSD-----HSCFTEIEEFLNL 300
T EK +++ G+ + H I V +D F + +F NL
Sbjct: 107 DITCVDAVEKKTAFVQQMAGTLMLPNLHAMHARIERVAPADCDVVISRAFASLHDFANL 165
>sp|Q6GML1|CMAH_DANRE Cytidine monophosphate-N-acetylneuraminic acid hydroxylase OS=Danio
rerio GN=cmah PE=2 SV=1
Length = 591
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 7 SVDRWTEGSQVYFLTHLHSDH-----TQGLSSAWARGPLFCSRLTAKLF-PLKFPGLDLS 60
++DR E VY ++H+HSDH Q LS P++ + +F L+ G++L+
Sbjct: 180 AMDRLMEADLVY-ISHMHSDHLSYPTLQHLSKKRPDIPIYVGNTSRPVFWYLEKSGVNLT 238
Query: 61 LIRVLDIGSWHSIS 74
I V+ G W ++
Sbjct: 239 NINVVPFGVWQNVD 252
>sp|P50624|P19_TBSV8 RNA silencing suppressor p19 OS=Tomato bushy stunt virus (strain
B8) GN=ORF4 PE=3 SV=1
Length = 171
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 20/100 (20%)
Query: 11 WTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSW 70
WTE Y T+ + D+ G +W G + R L++ G + SL RVL GSW
Sbjct: 39 WTEWRLHYDETNSNQDNPLGFKESWGFGKVVFKRY------LRYDGTETSLHRVL--GSW 90
Query: 71 HSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRG 110
SV +S D +GC+ + FRG
Sbjct: 91 TGDSVNYAAS------RFFGFDQ------IGCTYSIRFRG 118
>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1
PE=1 SV=1
Length = 926
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 176 PERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVK 235
P+ L TM L + ++ S T+V+ +P+ + LE+LNT H I +P G+ W +K
Sbjct: 597 PDCLVTMFNLKYLNL-----SKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGM-WKLK 650
Query: 236 PLK 238
L+
Sbjct: 651 KLR 653
>sp|Q5L296|SERC_GEOKA Phosphoserine aminotransferase OS=Geobacillus kaustophilus (strain
HTA426) GN=serC PE=3 SV=1
Length = 360
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 106 LLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSR 165
LL G GC + TG + +A E +IG T+V + K+ N +Y P
Sbjct: 87 LLTEGKIGCYVLTGAWSEKALKEAQKIGLTTVVASSKE------------ANYTYIPPLD 134
Query: 166 EVAAQQIWVWPERLQTMHLLGFHDIFTTK 194
+V WP+ +H+ + IF T+
Sbjct: 135 DVQ------WPKNAAYVHITSNNTIFGTQ 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,645,174
Number of Sequences: 539616
Number of extensions: 6197847
Number of successful extensions: 13481
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 13383
Number of HSP's gapped (non-prelim): 64
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)