Query 040718
Match_columns 403
No_of_seqs 272 out of 1973
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 11:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1361 Predicted hydrolase in 100.0 1.7E-43 3.7E-48 360.1 17.9 268 1-317 95-416 (481)
2 TIGR00649 MG423 conserved hypo 99.9 7E-22 1.5E-26 203.4 25.6 144 14-171 58-209 (422)
3 TIGR03675 arCOG00543 arCOG0054 99.9 3.9E-22 8.5E-27 213.8 22.5 135 15-171 229-390 (630)
4 COG0595 mRNA degradation ribon 99.9 6.8E-22 1.5E-26 207.8 21.8 309 14-361 66-443 (555)
5 COG1236 YSH1 Predicted exonucl 99.9 2.3E-22 5.1E-27 207.2 16.7 132 15-171 50-204 (427)
6 COG1782 Predicted metal-depend 99.8 9.1E-21 2E-25 192.2 10.8 136 14-171 234-396 (637)
7 PF07522 DRMBL: DNA repair met 99.7 1.1E-17 2.5E-22 141.6 10.0 100 188-312 4-108 (110)
8 KOG1136 Predicted cleavage and 99.7 1.3E-15 2.8E-20 148.5 16.8 138 14-171 60-224 (501)
9 TIGR03307 PhnP phosphonate met 99.7 1.2E-15 2.7E-20 145.1 14.8 132 2-157 35-180 (238)
10 PRK11244 phnP carbon-phosphoru 99.6 3E-15 6.5E-20 143.6 14.6 143 3-169 46-205 (250)
11 KOG1137 mRNA cleavage and poly 99.6 1.2E-15 2.5E-20 156.3 9.7 135 13-170 64-222 (668)
12 PF12706 Lactamase_B_2: Beta-l 99.6 1E-14 2.2E-19 132.7 14.0 115 14-157 29-159 (194)
13 PRK02113 putative hydrolase; P 99.6 1E-14 2.2E-19 139.8 14.5 141 3-171 44-209 (252)
14 TIGR02651 RNase_Z ribonuclease 99.5 3.5E-14 7.7E-19 139.1 11.6 130 3-158 27-234 (299)
15 TIGR02108 PQQ_syn_pqqB coenzym 99.5 8.6E-14 1.9E-18 137.7 14.1 125 14-155 79-222 (302)
16 TIGR02649 true_RNase_BN ribonu 99.5 6.7E-14 1.4E-18 138.1 10.8 129 4-158 31-236 (303)
17 PRK05184 pyrroloquinoline quin 99.5 2.2E-13 4.8E-18 134.8 14.1 124 14-155 80-222 (302)
18 PRK02126 ribonuclease Z; Provi 99.4 1.7E-12 3.6E-17 130.2 13.6 143 4-158 28-280 (334)
19 PRK00685 metal-dependent hydro 99.4 2E-12 4.4E-17 121.6 11.8 128 2-153 16-165 (228)
20 PRK00055 ribonuclease Z; Revie 99.2 6.5E-12 1.4E-16 120.5 4.8 133 3-159 29-201 (270)
21 smart00849 Lactamase_B Metallo 99.2 6.3E-11 1.4E-15 105.7 10.3 108 3-126 15-148 (183)
22 PRK11709 putative L-ascorbate 99.2 1.2E-10 2.6E-15 117.7 13.0 128 5-154 99-251 (355)
23 PRK04286 hypothetical protein; 99.2 2.3E-10 4.9E-15 113.2 11.6 121 14-153 65-210 (298)
24 TIGR03413 GSH_gloB hydroxyacyl 99.1 5.3E-10 1.1E-14 107.7 10.3 96 4-125 21-131 (248)
25 PRK11921 metallo-beta-lactamas 99.1 6.6E-10 1.4E-14 113.8 10.6 103 3-123 41-165 (394)
26 PLN02398 hydroxyacylglutathion 99.0 1E-09 2.3E-14 109.7 10.9 98 5-126 100-212 (329)
27 TIGR02650 RNase_Z_T_toga ribon 99.0 5.4E-10 1.2E-14 108.8 8.5 137 2-159 17-214 (277)
28 PLN02469 hydroxyacylglutathion 99.0 1.3E-09 2.9E-14 105.6 10.7 99 4-126 24-141 (258)
29 PRK05452 anaerobic nitric oxid 99.0 1.8E-09 3.9E-14 113.4 10.3 91 14-121 71-167 (479)
30 COG1234 ElaC Metal-dependent h 98.9 4.4E-10 9.5E-15 110.9 3.0 138 3-158 29-224 (292)
31 PRK10241 hydroxyacylglutathion 98.9 4.1E-09 8.9E-14 101.7 9.4 95 4-126 23-133 (251)
32 PF13483 Lactamase_B_3: Beta-l 98.9 8.8E-09 1.9E-13 92.3 9.0 111 2-154 15-137 (163)
33 PLN02962 hydroxyacylglutathion 98.9 8.5E-09 1.8E-13 99.7 9.2 97 5-126 38-156 (251)
34 COG5212 PDE1 Low-affinity cAMP 98.8 9.7E-09 2.1E-13 98.5 8.4 139 12-158 110-271 (356)
35 PF02112 PDEase_II: cAMP phosp 98.8 1.6E-08 3.4E-13 101.4 10.3 145 14-158 79-255 (335)
36 COG0491 GloB Zn-dependent hydr 98.7 6.2E-08 1.4E-12 90.3 10.2 106 4-125 36-172 (252)
37 KOG1135 mRNA cleavage and poly 98.7 1.3E-07 2.7E-12 100.1 12.8 151 3-169 24-215 (764)
38 COG2220 Predicted Zn-dependent 98.6 8.4E-07 1.8E-11 85.6 12.9 133 3-157 23-185 (258)
39 PF00753 Lactamase_B: Metallo- 98.6 5.2E-08 1.1E-12 86.3 4.2 110 2-126 14-151 (194)
40 COG1235 PhnP Metal-dependent h 98.6 1.7E-07 3.6E-12 91.3 7.8 127 14-158 62-206 (269)
41 KOG0813 Glyoxylase [General fu 98.5 1.9E-07 4.1E-12 90.3 7.9 90 14-127 51-146 (265)
42 TIGR00361 ComEC_Rec2 DNA inter 98.1 1.1E-05 2.4E-10 88.2 10.5 110 15-151 491-605 (662)
43 COG0426 FpaA Uncharacterized f 98.1 1.1E-05 2.4E-10 82.0 9.4 105 3-125 44-170 (388)
44 COG2333 ComEC Predicted hydrol 98.0 3E-05 6.6E-10 76.6 10.5 100 14-126 90-196 (293)
45 KOG2121 Predicted metal-depend 98.0 1.2E-06 2.6E-11 93.8 0.2 126 15-158 502-653 (746)
46 PRK11539 ComEC family competen 97.9 4.5E-05 9.8E-10 84.6 9.1 88 15-125 552-644 (755)
47 PF07521 RMMBL: RNA-metabolisi 97.7 4.6E-05 9.9E-10 53.8 3.8 34 279-312 8-41 (43)
48 COG1237 Metal-dependent hydrol 97.4 0.00014 3.1E-09 70.0 4.0 46 3-48 31-96 (259)
49 KOG0814 Glyoxylase [General fu 96.7 0.0027 5.9E-08 58.0 5.3 83 16-125 59-145 (237)
50 PF14597 Lactamase_B_5: Metall 96.6 0.0032 6.9E-08 57.9 5.4 98 2-126 31-142 (199)
51 KOG1138 Predicted cleavage and 96.1 0.029 6.2E-07 58.7 9.3 138 3-153 73-266 (653)
52 COG2248 Predicted hydrolase (m 95.7 0.03 6.6E-07 54.0 7.1 62 84-153 145-209 (304)
53 COG2015 Alkyl sulfatase and re 93.5 0.075 1.6E-06 55.5 4.0 44 2-45 134-202 (655)
54 KOG4736 Uncharacterized conser 90.8 0.85 1.8E-05 45.0 7.5 100 4-126 105-216 (302)
55 KOG3798 Predicted Zn-dependent 88.1 3.3 7.3E-05 40.3 9.1 138 14-169 132-283 (343)
56 PF12706 Lactamase_B_2: Beta-l 61.5 7.9 0.00017 34.5 3.1 25 286-310 169-193 (194)
57 PRK00685 metal-dependent hydro 47.5 43 0.00093 31.0 5.7 43 286-329 168-212 (228)
58 PF13483 Lactamase_B_3: Beta-l 46.7 18 0.00039 31.9 2.9 31 280-310 131-163 (163)
59 TIGR03307 PhnP phosphonate met 33.5 41 0.00088 31.6 3.2 26 287-312 187-212 (238)
60 PF13691 Lactamase_B_4: tRNase 30.2 30 0.00065 26.5 1.3 17 14-30 46-63 (63)
61 PRK11709 putative L-ascorbate 28.9 92 0.002 31.8 5.0 44 287-331 259-304 (355)
62 PRK11244 phnP carbon-phosphoru 28.0 57 0.0012 31.0 3.2 26 287-312 197-222 (250)
63 PRK00055 ribonuclease Z; Revie 26.5 68 0.0015 30.3 3.4 29 285-313 207-235 (270)
64 PRK02113 putative hydrolase; P 22.1 95 0.0021 29.3 3.5 28 285-312 197-224 (252)
No 1
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-43 Score=360.08 Aligned_cols=268 Identities=38% Similarity=0.656 Sum_probs=213.6
Q ss_pred CCCCeEEEcCCCC----CccEEEEcCCchhhhCCccccCCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEee
Q 040718 1 MEKGLISVDRWTE----GSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVV 76 (403)
Q Consensus 1 ~~~~~i~VD~f~~----~i~aifLTH~H~DHi~GL~~~~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~ 76 (403)
|+++.|.||+|+. ++.++||||+|+||+.||...|.++++||++.|+.++...+. ++...+++++.++++.+
T Consensus 95 ~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~-v~~~~i~~l~l~~~~~i--- 170 (481)
T KOG1361|consen 95 LPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVS-VTKQSIQALDLNQPLEI--- 170 (481)
T ss_pred cCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcc-cChhhceeecCCCceee---
Confidence 4567799999985 456999999999999999999999999999999999988885 77789999999999998
Q ss_pred cCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCe-eEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCC
Q 040718 77 SPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTY 155 (403)
Q Consensus 77 ~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~-~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty 155 (403)
.++.|++++|||||| |+||+|+...+ ++|||||||+..+|... + .......+|.+||||||
T Consensus 171 -------~~~~vt~ldAnHCPG----a~mf~F~~~~~~~~lhtGDFR~s~~m~~~-----p--~~~~~~~i~~lyLDtTy 232 (481)
T KOG1361|consen 171 -------PGIQVTLLDANHCPG----AVMFLFELSFGPCILHTGDFRASADMSKE-----P--ALTLEQTIDILYLDTTY 232 (481)
T ss_pred -------cceEEEEeccccCCC----ceEEEeecCCCceEEecCCcccChhhhhC-----h--HHhcCCccceEEEeecc
Confidence 679999999999999 99999999876 99999999999987431 1 11223789999999999
Q ss_pred CCCCCCCCCHHHHHHH----------------------------------------HhhChhhHHHHHHhcccc--ccc-
Q 040718 156 CNSSYAFPSREVAAQQ----------------------------------------IWVWPERLQTMHLLGFHD--IFT- 192 (403)
Q Consensus 156 ~~p~~~fp~~~~~~~~----------------------------------------I~v~~~r~~~l~~LG~~~--ift- 192 (403)
|+|.|+||+|++++++ ||++++|+.++.+||..| .++
T Consensus 233 cnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~~~~s 312 (481)
T KOG1361|consen 233 CNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDESKLLS 312 (481)
T ss_pred cCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChhhhhc
Confidence 9999999999998876 677889999999999887 334
Q ss_pred cCCccCeEEEEeccCCc-HHHHHHHh-----hhcCceeecCCCcceeeccCCCCCCCCCCCccccccccccccccchhhh
Q 040718 193 TKTSLTRVRAVPRYSFS-IDTLESLN-----TMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKL 266 (403)
Q Consensus 193 ~~~~~~~i~~vp~~~~~-~~~l~~l~-----~~~~~igi~ptg~~~~~~~~~g~~~~~~~~~s~~~~~~~~~sGw~~~~~ 266 (403)
.+.....+|++++..+. ...+.... .....+|+.|+||.....-.. .+... +. +
T Consensus 313 ~d~~~ssvhv~~~~~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~-------~~~~~-----~~--------~ 372 (481)
T KOG1361|consen 313 IDVDESSVHVVPMNSLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSL-------DKENS-----RP--------Q 372 (481)
T ss_pred cccccCceeEeehhhhccccchhhhhcccccCcceeEeeccccccccccccc-------Ccccc-----cc--------c
Confidence 47788899999987655 34443332 234568999999764311000 00000 00 0
Q ss_pred hhccCcceeecceEEeeeccCCCCHHHHHHHHHHhCCCEEEEccCCCCccc
Q 040718 267 KEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYV 317 (403)
Q Consensus 267 ~~~~~~~~r~~~~~~~VpySdHss~~EL~~fV~~~~P~~Vi~tv~~s~~~~ 317 (403)
.+ ....++.+|||+||+|.||.+|++.++|+.|||||+.+..+.
T Consensus 373 ~~-------~~i~~~~vpYseHSs~~el~~f~~~lk~k~iiptv~~~~~~~ 416 (481)
T KOG1361|consen 373 SG-------SKIPISLVPYSEHSSYTELSEFLSKLKPKTIIPTVNEDTELS 416 (481)
T ss_pred cc-------cccccccccccccCCHHHHHHHHHhcCCCeeecCccCCcccc
Confidence 00 034678999999999999999999999999999999876443
No 2
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.90 E-value=7e-22 Score=203.40 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=103.0
Q ss_pred CccEEEEcCCchhhhCCccccC---CCCcEEeCHhhHhhccccCC--CCC-ccceEeccCCCeEEEEeecCCCCCcC-ce
Q 040718 14 GSQVYFLTHLHSDHTQGLSSAW---ARGPLFCSRLTAKLFPLKFP--GLD-LSLIRVLDIGSWHSISVVSPSSGEKT-FV 86 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~~---~~~pIy~s~~T~~lL~~~~~--~~~-~~~i~~l~~~~~~~i~l~~~~~~~~~-~v 86 (403)
.++++||||+|.||++||+.++ ...+|||++.|++++...+. ++. ...+.+++.++++++ + ++
T Consensus 58 ~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i----------g~~~ 127 (422)
T TIGR00649 58 KVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIET----------GENH 127 (422)
T ss_pred cCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEe----------CCce
Confidence 4689999999999999999762 34689999999998875432 111 124567778887776 4 59
Q ss_pred EEEEEecCC-CCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCCCCCCCCH
Q 040718 87 EVIAIDANH-CPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSR 165 (403)
Q Consensus 87 ~Vt~~~A~H-~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p~~~fp~~ 165 (403)
+|++++++| +|| |++|+|+.++++++||||+++..............+..+...++|+|++|+||+......+++
T Consensus 128 ~v~~~~~~H~~p~----s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e 203 (422)
T TIGR00649 128 TIEFIRITHSIPD----SVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSE 203 (422)
T ss_pred EEEEEECCCCCcc----eEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCH
Confidence 999999999 799 999999998899999999999764321000000111122235799999999999754334666
Q ss_pred HHHHHH
Q 040718 166 EVAAQQ 171 (403)
Q Consensus 166 ~~~~~~ 171 (403)
....+.
T Consensus 204 ~~~~~~ 209 (422)
T TIGR00649 204 AKVLEQ 209 (422)
T ss_pred HHHHHH
Confidence 655444
No 3
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.89 E-value=3.9e-22 Score=213.82 Aligned_cols=135 Identities=27% Similarity=0.375 Sum_probs=103.9
Q ss_pred ccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCC---------C----CCc-------cceEeccCCCeE
Q 040718 15 SQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFP---------G----LDL-------SLIRVLDIGSWH 71 (403)
Q Consensus 15 i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~---------~----~~~-------~~i~~l~~~~~~ 71 (403)
+++|||||+|.||+|+|+.+ .+.+||||++.|.+++...+. + +.. ..+.++++++++
T Consensus 229 IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~ 308 (630)
T TIGR03675 229 LDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVT 308 (630)
T ss_pred CcEEEECCCCHHHHhhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeE
Confidence 68999999999999999976 257899999999887642110 1 110 134577888888
Q ss_pred EEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECC--eeEEEECCcCcCCCchhhhccchhhhhhc--cCCCcc
Q 040718 72 SISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDF--GCLLYTGDFRWEASNERAEIGRNTLVKAL--KDDVVD 147 (403)
Q Consensus 72 ~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~--~~vlyTGD~r~~~~~~~~~~~~~~ll~~l--~~~~~D 147 (403)
.+. ++++|++++|||++| |+++.|+..+ .+|+||||++...+. +++.. ...++|
T Consensus 309 ~i~---------~~i~vt~~~AGHilG----sa~~~~~i~dg~~~IvYTGD~~~~~~~---------ll~~a~~~~~~vD 366 (630)
T TIGR03675 309 DIA---------PDIKLTFYNAGHILG----SAIAHLHIGDGLYNIVYTGDFKYEKTR---------LLDPAVNKFPRVE 366 (630)
T ss_pred Eec---------CCEEEEEecCccccC----ceEEEEEECCCCEEEEEeCCCCCCCCc---------CccchhhcCCCCC
Confidence 762 589999999999999 9998887643 589999999997653 22211 125799
Q ss_pred EEEEcCCCCCCCCCCCCHHHHHHH
Q 040718 148 ILYLDNTYCNSSYAFPSREVAAQQ 171 (403)
Q Consensus 148 vLilD~Ty~~p~~~fp~~~~~~~~ 171 (403)
+||+|+||+++.+.+|+++++.+.
T Consensus 367 ~LI~ESTYg~~~~~~~~r~~~e~~ 390 (630)
T TIGR03675 367 TLIMESTYGGRDDYQPSREEAEKE 390 (630)
T ss_pred EEEEeCccCCCCCCCCCHHHHHHH
Confidence 999999999998889999877655
No 4
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.89 E-value=6.8e-22 Score=207.75 Aligned_cols=309 Identities=21% Similarity=0.224 Sum_probs=187.1
Q ss_pred CccEEEEcCCchhhhCCccccC--CC-CcEEeCHhhHhhccccCCCC---C-ccceEeccCCCeEEEEeecCCCCCcCce
Q 040718 14 GSQVYFLTHLHSDHTQGLSSAW--AR-GPLFCSRLTAKLFPLKFPGL---D-LSLIRVLDIGSWHSISVVSPSSGEKTFV 86 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~~--~~-~pIy~s~~T~~lL~~~~~~~---~-~~~i~~l~~~~~~~i~l~~~~~~~~~~v 86 (403)
.++++||||+|.||+||++.++ .. .|||+++.|+.+++.++... . ...+..++.+..+++ +.+
T Consensus 66 kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~----------~~~ 135 (555)
T COG0595 66 KVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKF----------GSF 135 (555)
T ss_pred cceEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEe----------CcE
Confidence 5789999999999999999874 23 89999999999998765321 1 135677788887777 899
Q ss_pred EEEEEecCC-CCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCCCCCCCCH
Q 040718 87 EVIAIDANH-CPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSR 165 (403)
Q Consensus 87 ~Vt~~~A~H-~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p~~~fp~~ 165 (403)
.|++++++| +|+ |++|+++++.+.|+|||||+++++.......+...+..+...++++|++|+|.......-|++
T Consensus 136 ~v~f~~vtHSIPd----s~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE 211 (555)
T COG0595 136 EVEFFPVTHSIPD----SLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSE 211 (555)
T ss_pred EEEEEeecccCcc----ceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCH
Confidence 999999999 999 999999999999999999999987533221222223444457899999999999965667777
Q ss_pred HHHHHHHhh----------------ChhhHHHH-------------------------HHhcccc----ccccCCc----
Q 040718 166 EVAAQQIWV----------------WPERLQTM-------------------------HLLGFHD----IFTTKTS---- 196 (403)
Q Consensus 166 ~~~~~~I~v----------------~~~r~~~l-------------------------~~LG~~~----ift~~~~---- 196 (403)
.++.+.+.. .-.|.+.+ ..||+-+ .|.....
T Consensus 212 ~~v~~~l~~i~~~a~grVIv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~~~~~~~~~i~~~~~~~~ 291 (555)
T COG0595 212 SEVGENLEDIIRNAKGRVIVTTFASNIERIQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGYLKLPDESFIEIREVKRY 291 (555)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHcCCeEEEEcHhHHHHHHHHhhcccccCccccccCHHHhccc
Confidence 777665210 01222211 1111100 1111000
Q ss_pred -cCeEEEEeccCCcHHHHHHHhhh----cCceeecCCCcceeeccCCCCCCCCCCCccccccccccccc--cchhhhhhc
Q 040718 197 -LTRVRAVPRYSFSIDTLESLNTM----HPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGG--TQTEKLKEA 269 (403)
Q Consensus 197 -~~~i~~vp~~~~~~~~l~~l~~~----~~~igi~ptg~~~~~~~~~g~~~~~~~~~s~~~~~~~~~sG--w~~~~~~~~ 269 (403)
..++.++... .+.+.+.+|.++ ++.+.+.+....+.+. +. ..| |...+....
T Consensus 292 ~~~~~lii~TG-~qgep~aaL~r~a~~~h~~~~i~~gD~vIfss-------------~~-------ipgne~~~~~~~n~ 350 (555)
T COG0595 292 PDEEVLIICTG-SQGEPMAALSRMANGEHRYVKIKEGDTVIFSS-------------SP-------IPGNEAAVYRLLNR 350 (555)
T ss_pred cccceEEEEeC-CCCCchhhhhHhhcCCccceecCCCCeEEEec-------------cC-------cCCcHHHHHHHHHH
Confidence 0011111111 011222222221 1111121111111000 00 012 222111111
Q ss_pred c--CcceeecceEEeeeccCCCCHHHHHHHHHHhCCCEEEEccCCCCcccChhhHHHHHHhhcCCCcc--c-cccccccc
Q 040718 270 L--GSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLR--Y-KQEKRVQH 344 (403)
Q Consensus 270 ~--~~~~r~~~~~~~VpySdHss~~EL~~fV~~~~P~~Vi~tv~~s~~~~~~~~~f~~~~~~~~~~~~--~-~~~~~~~~ 344 (403)
+ .+++-.......+..|.|++-+||+.++++++|+.++|+||. |.+. ...+.+....|.+.. + -.||...+
T Consensus 351 l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGe---yr~~-~~~a~la~~~G~~~~~i~i~~nG~v~~ 426 (555)
T COG0595 351 LYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGE---YRML-VAHAKLAEEEGIPQENIFILRNGDVLE 426 (555)
T ss_pred HHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCC---cHHH-HHHHHHHHhcCCCcccEEEecCceEEE
Confidence 1 111112222256789999999999999999999999999994 5443 335777788887774 2 88888876
Q ss_pred eeeeeeccccccccCcc
Q 040718 345 KTVVAAQIKFNVESGRS 361 (403)
Q Consensus 345 ~~~~~~~~~~~~~~~~~ 361 (403)
-....+.+.+++++|..
T Consensus 427 l~~~~~~~~~~v~~g~~ 443 (555)
T COG0595 427 LEGGKARVIGKVPAGDV 443 (555)
T ss_pred ecCCcccccCccccCCe
Confidence 44445555557776653
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.3e-22 Score=207.15 Aligned_cols=132 Identities=30% Similarity=0.434 Sum_probs=106.5
Q ss_pred ccEEEEcCCchhhhCCccccC---CCCcEEeCHhhHhhccccCCC---CC----------------ccceEeccCCCeEE
Q 040718 15 SQVYFLTHLHSDHTQGLSSAW---ARGPLFCSRLTAKLFPLKFPG---LD----------------LSLIRVLDIGSWHS 72 (403)
Q Consensus 15 i~aifLTH~H~DHi~GL~~~~---~~~pIy~s~~T~~lL~~~~~~---~~----------------~~~i~~l~~~~~~~ 72 (403)
+|++||||+|.||+++|+.+. .+++||||+.|+++++..+.. +. ...++++++++++.
T Consensus 50 vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~ 129 (427)
T COG1236 50 VDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVE 129 (427)
T ss_pred cCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceE
Confidence 589999999999999999762 358999999999988753211 00 12566799999998
Q ss_pred EEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCC-ccEEEE
Q 040718 73 ISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDV-VDILYL 151 (403)
Q Consensus 73 i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~-~DvLil 151 (403)
+ ++++|++++|||++| |++|.++.++++|+||||++...+. ++...+... +|+||+
T Consensus 130 v----------~~~~v~~~~AGHilG----sa~~~le~~~~~ilytGD~~~~~~~---------l~~~a~~~~~~DvLI~ 186 (427)
T COG1236 130 V----------GGVKVTFYNAGHILG----SAAILLEVDGGRILYTGDVKRRKDR---------LLNGAELPPCIDVLIV 186 (427)
T ss_pred e----------eeEEEEEecCCCccc----eeEEEEEeCCceEEEEeccCCCcCC---------CCCccccCCCCcEEEE
Confidence 8 679999999999999 9999999999999999999987763 444443333 599999
Q ss_pred cCCCCCCCCCCCCHHHHHHH
Q 040718 152 DNTYCNSSYAFPSREVAAQQ 171 (403)
Q Consensus 152 D~Ty~~p~~~fp~~~~~~~~ 171 (403)
|+||+++ .+|++.++.+.
T Consensus 187 EsTYg~~--~~~~r~~~e~~ 204 (427)
T COG1236 187 ESTYGDR--LHPNRDEVERR 204 (427)
T ss_pred ecccCCc--cCCCHHHHHHH
Confidence 9999985 67777776655
No 6
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.83 E-value=9.1e-21 Score=192.16 Aligned_cols=136 Identities=27% Similarity=0.426 Sum_probs=105.5
Q ss_pred CccEEEEcCCchhhhCCccccC---CCCcEEeCHhhHhhcccc---C-------CC---CCc-------cceEeccCCCe
Q 040718 14 GSQVYFLTHLHSDHTQGLSSAW---ARGPLFCSRLTAKLFPLK---F-------PG---LDL-------SLIRVLDIGSW 70 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~~---~~~pIy~s~~T~~lL~~~---~-------~~---~~~-------~~i~~l~~~~~ 70 (403)
.+|||+|||+|.||+|-||.+| +.+||||+++|.+++-.- | ++ +.. ....++++++.
T Consensus 234 ~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgev 313 (637)
T COG1782 234 ELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEV 313 (637)
T ss_pred ccceEEEeecccccccchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcc
Confidence 3799999999999999999874 689999999999887421 1 11 111 13346788888
Q ss_pred EEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECC--eeEEEECCcCcCCCchhhhccchhhhhhccC--CCc
Q 040718 71 HSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDF--GCLLYTGDFRWEASNERAEIGRNTLVKALKD--DVV 146 (403)
Q Consensus 71 ~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~--~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~--~~~ 146 (403)
..|. .++++|++.|||+.| |+|-.+--++ ..++|||||++.... +++.... .++
T Consensus 314 TDIa---------PDirLTf~NAGHILG----SA~~HlHIGdGlyNi~yTGDfk~~~tr---------Ll~~A~n~FpRv 371 (637)
T COG1782 314 TDIA---------PDIRLTFYNAGHILG----SAMAHLHIGDGLYNIVYTGDFKFEKTR---------LLEPANNKFPRV 371 (637)
T ss_pred cccC---------CccEEEEecccchhc----ceeeEEEecCCceeEEEecccccceee---------ecChhhccCcch
Confidence 7762 689999999999999 8887665544 479999999998763 4433322 789
Q ss_pred cEEEEcCCCCCCCCCCCCHHHHHHH
Q 040718 147 DILYLDNTYCNSSYAFPSREVAAQQ 171 (403)
Q Consensus 147 DvLilD~Ty~~p~~~fp~~~~~~~~ 171 (403)
+.|++|+||+.+.-..|+|+++.+.
T Consensus 372 EtlimEsTYGg~~d~q~~R~eaE~~ 396 (637)
T COG1782 372 ETLIMESTYGGRDDVQPPREEAEKE 396 (637)
T ss_pred hheeeeeccCCccccCccHHHHHHH
Confidence 9999999999988788999988766
No 7
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=99.73 E-value=1.1e-17 Score=141.65 Aligned_cols=100 Identities=37% Similarity=0.580 Sum_probs=76.0
Q ss_pred ccccccCCccCeEEEEeccCCcHHHHHHHhh-----hcCceeecCCCcceeeccCCCCCCCCCCCccccccccccccccc
Q 040718 188 HDIFTTKTSLTRVRAVPRYSFSIDTLESLNT-----MHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQ 262 (403)
Q Consensus 188 ~~ift~~~~~~~i~~vp~~~~~~~~l~~l~~-----~~~~igi~ptg~~~~~~~~~g~~~~~~~~~s~~~~~~~~~sGw~ 262 (403)
.++||+++..++||+||+..+..++|..+.+ ..+.+||+||||.+. ..++.... ....
T Consensus 4 ~~~~T~d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~--~~~~~~~~------~~~~--------- 66 (110)
T PF07522_consen 4 SSLFTTDPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFS--NKKKKSSV------SISP--------- 66 (110)
T ss_pred hceeecCCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccc--cCCCcccc------cccc---------
Confidence 4589999999999999999999999988765 678899999996543 21111100 0000
Q ss_pred hhhhhhccCcceeecceEEeeeccCCCCHHHHHHHHHHhCCCEEEEccCC
Q 040718 263 TEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSS 312 (403)
Q Consensus 263 ~~~~~~~~~~~~r~~~~~~~VpySdHss~~EL~~fV~~~~P~~Vi~tv~~ 312 (403)
. ...+.....|.|||||||||.||.+||+.++|++|||||..
T Consensus 67 ~--------~~~~~~~~~~~VPYSeHSSf~EL~~Fv~~l~P~~IiPtV~~ 108 (110)
T PF07522_consen 67 S--------LQSRGNVRIYRVPYSEHSSFSELKEFVSFLKPKKIIPTVNV 108 (110)
T ss_pred c--------cccCCCceEEEEecccCCCHHHHHHHHHhcCCcEEEccccC
Confidence 0 01123567899999999999999999999999999999985
No 8
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.68 E-value=1.3e-15 Score=148.49 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=103.7
Q ss_pred CccEEEEcCCchhhhCCcccc----CCCCcEEeCHhhHhhccc---cCCC--CC---c-------------cceEeccCC
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA----WARGPLFCSRLTAKLFPL---KFPG--LD---L-------------SLIRVLDIG 68 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~----~~~~pIy~s~~T~~lL~~---~~~~--~~---~-------------~~i~~l~~~ 68 (403)
-++.++|||+|.||+|+|+.. .+++|||++.+|.++-.. .|.. ++ . ..+.++.+.
T Consensus 60 ~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~ 139 (501)
T KOG1136|consen 60 AIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLH 139 (501)
T ss_pred ceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeeh
Confidence 368999999999999999975 479999999998876532 1110 00 0 134566777
Q ss_pred CeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccE
Q 040718 69 SWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDI 148 (403)
Q Consensus 69 ~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~Dv 148 (403)
+.++++ .++.|+++-|||..| ++||.+..++.+|+||||+...++.. .-...+...+.|+
T Consensus 140 qt~~vD---------~dl~IrayYAGHVLG----AaMf~ikvGd~svvYTGDYnmTpDrH-------LGaA~id~~rpdl 199 (501)
T KOG1136|consen 140 QTIQVD---------EDLQIRAYYAGHVLG----AAMFYIKVGDQSVVYTGDYNMTPDRH-------LGAAWIDKCRPDL 199 (501)
T ss_pred heEEec---------ccceeeeeecccccc----eeEEEEEecceeEEEecCccCCcccc-------cchhhhccccCce
Confidence 777773 789999999999999 99999999999999999999998741 1123444578999
Q ss_pred EEEcCCCCCCC--CCCCCHHHHHHH
Q 040718 149 LYLDNTYCNSS--YAFPSREVAAQQ 171 (403)
Q Consensus 149 LilD~Ty~~p~--~~fp~~~~~~~~ 171 (403)
||.|+||+... ...+-+.+-++.
T Consensus 200 LIsESTYattiRdskr~rERdFLk~ 224 (501)
T KOG1136|consen 200 LISESTYATTIRDSKRCRERDFLKK 224 (501)
T ss_pred EEeeccceeeeccccchhHHHHHHH
Confidence 99999999763 234444444443
No 9
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.66 E-value=1.2e-15 Score=145.08 Aligned_cols=132 Identities=23% Similarity=0.213 Sum_probs=96.4
Q ss_pred CCCeEEEcCCC---------CCccEEEEcCCchhhhCCcccc-C---CCCcEEeCHhhHhhccc-cCCCCCccceEeccC
Q 040718 2 EKGLISVDRWT---------EGSQVYFLTHLHSDHTQGLSSA-W---ARGPLFCSRLTAKLFPL-KFPGLDLSLIRVLDI 67 (403)
Q Consensus 2 ~~~~i~VD~f~---------~~i~aifLTH~H~DHi~GL~~~-~---~~~pIy~s~~T~~lL~~-~~~~~~~~~i~~l~~ 67 (403)
++..|+||+.. ..++++||||.|.||++||..+ + ...+||+++.+..+... ..+++. .....+..
T Consensus 35 ~~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 113 (238)
T TIGR03307 35 NGARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGIL-DFSKPLEA 113 (238)
T ss_pred CCcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCcccc-cccccccC
Confidence 34578999852 2578999999999999999654 2 35789999877543211 111111 11123556
Q ss_pred CCeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCcc
Q 040718 68 GSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVD 147 (403)
Q Consensus 68 ~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~D 147 (403)
++++.+ ++++|++++++|..+ +++|+|+.++++++|+||+....+ .+.+.++..++|
T Consensus 114 ~~~~~~----------~~~~i~~~~~~H~~~----~~g~~i~~~~~~i~y~gDt~~~~~---------~~~~~~~~~~~D 170 (238)
T TIGR03307 114 FEPFDL----------GGLRVTPLPLVHSKL----TFGYLLETDGQRVAYLTDTAGLPP---------DTEAFLKNHPLD 170 (238)
T ss_pred CceEEE----------CCEEEEEEecCCCCc----ceEEEEecCCcEEEEEecCCCCCH---------HHHHHHhcCCCC
Confidence 777766 789999999999888 999999999999999999976543 234445445899
Q ss_pred EEEEcCCCCC
Q 040718 148 ILYLDNTYCN 157 (403)
Q Consensus 148 vLilD~Ty~~ 157 (403)
+||+|+||..
T Consensus 171 ~li~e~~~~~ 180 (238)
T TIGR03307 171 VLILDCSHPP 180 (238)
T ss_pred EEEEeCCcCc
Confidence 9999999964
No 10
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.64 E-value=3e-15 Score=143.57 Aligned_cols=143 Identities=22% Similarity=0.201 Sum_probs=100.0
Q ss_pred CCeEEEcCCC---------CCccEEEEcCCchhhhCCcccc-C---CCCcEEeCHhhHhhccc-cCCCCCccceEeccCC
Q 040718 3 KGLISVDRWT---------EGSQVYFLTHLHSDHTQGLSSA-W---ARGPLFCSRLTAKLFPL-KFPGLDLSLIRVLDIG 68 (403)
Q Consensus 3 ~~~i~VD~f~---------~~i~aifLTH~H~DHi~GL~~~-~---~~~pIy~s~~T~~lL~~-~~~~~~~~~i~~l~~~ 68 (403)
+..|+||+.. ..+++|||||.|.||++||..+ + ...+||+++.+..+... ..++.. ....++..+
T Consensus 46 ~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 124 (250)
T PRK11244 46 GARTLIDAGLPDLAERFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPGIL-DFSHPLEPF 124 (250)
T ss_pred CCEEEEECCChHHhhcCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCcccc-ccccccCCC
Confidence 4568999852 3578999999999999999765 3 35689998765432211 111110 111235566
Q ss_pred CeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccE
Q 040718 69 SWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDI 148 (403)
Q Consensus 69 ~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~Dv 148 (403)
+.+++ ++++|++++++|+.+ +++|+|+.++++++|+||+....+ .+.+.+...++|+
T Consensus 125 ~~~~~----------~~~~I~~~~~~H~~~----s~g~~i~~~~~~i~ysgDt~~~~~---------~~~~~~~~~~~Dl 181 (250)
T PRK11244 125 EPFDL----------GGLQVTPLPLNHSKL----TFGYLLETAHSRVAYLTDTVGLPE---------DTLKFLRNNQPDL 181 (250)
T ss_pred CCeeE----------CCEEEEEEeeCCCcc----eeEEEEecCCeEEEEEcCCCCCCH---------HHHHHHhcCCCCE
Confidence 66666 789999999999888 999999999999999999987543 2334444468999
Q ss_pred EEEcCCCCCCC---CCCCCHHHHH
Q 040718 149 LYLDNTYCNSS---YAFPSREVAA 169 (403)
Q Consensus 149 LilD~Ty~~p~---~~fp~~~~~~ 169 (403)
|++|+||.... ..+-+.++++
T Consensus 182 li~e~~~~~~~~~~~~H~~~~~a~ 205 (250)
T PRK11244 182 LVLDCSHPPQEDAPRNHNDLTTAL 205 (250)
T ss_pred EEEeCcCCCCCCCCCCCCCHHHHH
Confidence 99999997542 2344444444
No 11
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.62 E-value=1.2e-15 Score=156.33 Aligned_cols=135 Identities=21% Similarity=0.297 Sum_probs=100.5
Q ss_pred CCccEEEEcCCchhhhCCcccc----CCCCcEEeCHhhHhhccccCCC------CC--------------ccceEeccCC
Q 040718 13 EGSQVYFLTHLHSDHTQGLSSA----WARGPLFCSRLTAKLFPLKFPG------LD--------------LSLIRVLDIG 68 (403)
Q Consensus 13 ~~i~aifLTH~H~DHi~GL~~~----~~~~pIy~s~~T~~lL~~~~~~------~~--------------~~~i~~l~~~ 68 (403)
+.++.+++||+|.||++.|+.+ .+.+.+|++..|.++.+--... .. .+++..+.+.
T Consensus 64 s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfh 143 (668)
T KOG1137|consen 64 SAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFH 143 (668)
T ss_pred ccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeec
Confidence 4578999999999999999975 3678999999888776521110 00 0234555666
Q ss_pred CeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccE
Q 040718 69 SWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDI 148 (403)
Q Consensus 69 ~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~Dv 148 (403)
+..++ .|++++++.|||+.| ++||++|-.+-+++|||||....+. +.....+-+.+.|+
T Consensus 144 e~~ev----------~gIkf~p~~aGhVlg----acMf~veiagv~lLyTGd~sreeDr-------hl~aae~P~~~~dv 202 (668)
T KOG1137|consen 144 ETVEV----------NGIKFWPYHAGHVLG----ACMFMVEIAGVRLLYTGDYSREEDR-------HLIAAEMPPTGPDV 202 (668)
T ss_pred ccccc----------CCeEEEeeccchhhh----heeeeeeeceEEEEeccccchhhcc-------cccchhCCCCCccE
Confidence 66555 799999999999999 9999999999999999999988763 11123344578999
Q ss_pred EEEcCCCCCCCCCCCCHHHHHH
Q 040718 149 LYLDNTYCNSSYAFPSREVAAQ 170 (403)
Q Consensus 149 LilD~Ty~~p~~~fp~~~~~~~ 170 (403)
||.|+||+-- .+.++++-..
T Consensus 203 li~estygv~--~h~~r~~re~ 222 (668)
T KOG1137|consen 203 LITESTYGVQ--IHEPREEREG 222 (668)
T ss_pred EEEEeeeeEE--ecCchHHhhh
Confidence 9999999964 4455554433
No 12
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.61 E-value=1e-14 Score=132.72 Aligned_cols=115 Identities=29% Similarity=0.446 Sum_probs=88.0
Q ss_pred CccEEEEcCCchhhhCCcccc---C--CCCcEEeCHhhHhhccc-cC------CCCCccceEeccCCCeEEEEeecCCCC
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA---W--ARGPLFCSRLTAKLFPL-KF------PGLDLSLIRVLDIGSWHSISVVSPSSG 81 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~---~--~~~pIy~s~~T~~lL~~-~~------~~~~~~~i~~l~~~~~~~i~l~~~~~~ 81 (403)
.++++||||.|.||+.||+.+ + ...+|||++.+.+.+.. .+ .......+..+..++.+++
T Consensus 29 ~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 100 (194)
T PF12706_consen 29 DIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEI-------- 100 (194)
T ss_dssp CEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEE--------
T ss_pred CCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEe--------
Confidence 578999999999999997654 1 22389999999998873 22 1111123455666666665
Q ss_pred CcCceEEEEEecCCCCCCCCceEE----EEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCC
Q 040718 82 EKTFVEVIAIDANHCPGILGCSVM----LLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCN 157 (403)
Q Consensus 82 ~~~~v~Vt~~~A~H~pG~~~~Sv~----fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~ 157 (403)
++++|++++++|..+ +.+ |+|+.++.+|+|+||+.. . ++.+ .++|+|++|++|..
T Consensus 101 --~~~~i~~~~~~H~~~----~~~~~~g~~i~~~~~~i~~~gD~~~--~-----------~~~~--~~~D~li~~~~~~~ 159 (194)
T PF12706_consen 101 --GDFRITPFPANHGPP----SYGGNKGFVIEPDGKKIFYSGDTNY--D-----------FEEL--KNIDLLILECGYID 159 (194)
T ss_dssp --TTEEEEEEEEESSSC----CEEECCEEEEEETTEEEEEETSSSS--C-----------HHHH--TTBSEEEEEBCBSS
T ss_pred --ceEEEEEEecccccc----ccccCceEEEecCCcceEEeeccch--h-----------hhhh--ccCCEEEEeCCCcc
Confidence 899999999999988 777 999999999999999999 2 1234 56999999999983
No 13
>PRK02113 putative hydrolase; Provisional
Probab=99.61 E-value=1e-14 Score=139.76 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=102.8
Q ss_pred CCeEEEcCCC-----------CCccEEEEcCCchhhhCCcccc-----CCCCcEEeCHhhHhhccccCC---------CC
Q 040718 3 KGLISVDRWT-----------EGSQVYFLTHLHSDHTQGLSSA-----WARGPLFCSRLTAKLFPLKFP---------GL 57 (403)
Q Consensus 3 ~~~i~VD~f~-----------~~i~aifLTH~H~DHi~GL~~~-----~~~~pIy~s~~T~~lL~~~~~---------~~ 57 (403)
+..|+||+-. ..+++|||||.|.||++||+.+ ....+||+++.+.+.|...+. ++
T Consensus 44 ~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 123 (252)
T PRK02113 44 GARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPYCFVEHSYPGV 123 (252)
T ss_pred CeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCeeeccCCCCCC
Confidence 4568999854 2578999999999999999854 246789999999888764421 11
Q ss_pred CccceEeccCCCeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhh
Q 040718 58 DLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTL 137 (403)
Q Consensus 58 ~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~l 137 (403)
....+..+..++++++ ++++|+++++.|.+. .+++|.+ ++++|+||+...++ .+
T Consensus 124 ~~~~~~~~~~g~~~~~----------~~~~i~~~~~~H~~~---~~~gy~i----~~i~y~~Dt~~~~~---------~~ 177 (252)
T PRK02113 124 PNIPLREIEPDRPFLV----------NHTEVTPLRVMHGKL---PILGYRI----GKMAYITDMLTMPE---------EE 177 (252)
T ss_pred cceeeEEcCCCCCEEE----------CCeEEEEEEecCCCc---cEEEEEe----CCEEEccCCCCCCH---------HH
Confidence 1123455666777766 789999999999532 2788888 47999999986553 24
Q ss_pred hhhccCCCccEEEEcCCCCCCCCCCCCHHHHHHH
Q 040718 138 VKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQ 171 (403)
Q Consensus 138 l~~l~~~~~DvLilD~Ty~~p~~~fp~~~~~~~~ 171 (403)
++.+ .++|+||+|+++..+...+.+-+++++.
T Consensus 178 ~~~~--~~~DlLi~e~~~~~~~~~H~t~~~a~~~ 209 (252)
T PRK02113 178 YEQL--QGIDVLVMNALRIAPHPTHQSLEEALEN 209 (252)
T ss_pred HHHh--cCCCEEEEhhhcCCCCCCcCCHHHHHHH
Confidence 4555 6899999999986555566666666543
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.54 E-value=3.5e-14 Score=139.08 Aligned_cols=130 Identities=20% Similarity=0.162 Sum_probs=94.1
Q ss_pred CCeEEEcCCC-------------CCccEEEEcCCchhhhCCcccc----C-----CCCcEEeCHhhHhhccccCCC--CC
Q 040718 3 KGLISVDRWT-------------EGSQVYFLTHLHSDHTQGLSSA----W-----ARGPLFCSRLTAKLFPLKFPG--LD 58 (403)
Q Consensus 3 ~~~i~VD~f~-------------~~i~aifLTH~H~DHi~GL~~~----~-----~~~pIy~s~~T~~lL~~~~~~--~~ 58 (403)
+..|+||+.. ..+++|||||+|.||++||+.+ + ...+||+++.+.+.+...+.. ..
T Consensus 27 ~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~ 106 (299)
T TIGR02651 27 GELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTY 106 (299)
T ss_pred CeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHcccC
Confidence 4578999853 1378999999999999999864 1 145799999998877542210 00
Q ss_pred ---ccceEeccCCC-eEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEEC-----------------------
Q 040718 59 ---LSLIRVLDIGS-WHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGD----------------------- 111 (403)
Q Consensus 59 ---~~~i~~l~~~~-~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~----------------------- 111 (403)
...+.++..++ .+.+ ++++|+++++.|... +++|+|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~H~~~----~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~ 172 (299)
T TIGR02651 107 LNYPIKIHEIEEGGLVFED----------DGFKVEAFPLDHSIP----SLGYRFEEKDRPGKFDREKAKELGIPPGPLYG 172 (299)
T ss_pred CCceEEEEEccCCCceEec----------CCEEEEEEEcCCCCc----eEEEEEEECCCCCCcCHHHHHHCCCCcchhHH
Confidence 01223444444 2333 789999999999776 999999864
Q ss_pred ---------------------------CeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCC
Q 040718 112 ---------------------------FGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNS 158 (403)
Q Consensus 112 ---------------------------~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p 158 (403)
+.+++|+||+...+. +.+.+ .++|+||+||||...
T Consensus 173 ~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~----------~~~~~--~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 173 KLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEE----------VIEFA--KNADLLIHEATFLDE 234 (299)
T ss_pred HhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHH----------HHHHH--cCCCEEEEECCCCch
Confidence 358999999997542 44556 679999999999874
No 15
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.53 E-value=8.6e-14 Score=137.70 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=90.6
Q ss_pred CccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCCCC---Ccc--ceEeccCCCeEEEEeecCCCCCcCce
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFPGL---DLS--LIRVLDIGSWHSISVVSPSSGEKTFV 86 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~~~---~~~--~i~~l~~~~~~~i~l~~~~~~~~~~v 86 (403)
.+++|||||.|.||+.||+.+ ....+|||++.|.+.|.. ++.+ +.. .+++++.++++.+.. ...+++
T Consensus 79 ~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~L~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~g~ 152 (302)
T TIGR02108 79 PIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQDLSD-NPIFNVLDHWNVRRQPIALNEKFEFRI-----VARPGL 152 (302)
T ss_pred cCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHHHHh-CCCccccchhhccceEecCCCcEEecc-----cccCCE
Confidence 379999999999999999976 357899999999998864 3211 111 124566666665510 001369
Q ss_pred EEEEEecCCC--------CCCC--CceEEEEEEEC--CeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCC
Q 040718 87 EVIAIDANHC--------PGIL--GCSVMLLFRGD--FGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNT 154 (403)
Q Consensus 87 ~Vt~~~A~H~--------pG~~--~~Sv~fl~e~~--~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~T 154 (403)
+|+++++.|. .|+. ..+++|+|+.+ +.+++|++|+...++ .+++.+ .++|+||+|+|
T Consensus 153 ~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~---------~~~~~l--~~~d~liida~ 221 (302)
T TIGR02108 153 EFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITD---------DLKARM--AGADLVFFDGT 221 (302)
T ss_pred EEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCH---------HHHHHH--hCCCEEEEeCC
Confidence 9999999832 0111 24899999988 889999999986554 366777 67899999999
Q ss_pred C
Q 040718 155 Y 155 (403)
Q Consensus 155 y 155 (403)
|
T Consensus 222 ~ 222 (302)
T TIGR02108 222 L 222 (302)
T ss_pred C
Confidence 4
No 16
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.51 E-value=6.7e-14 Score=138.07 Aligned_cols=129 Identities=18% Similarity=0.103 Sum_probs=93.3
Q ss_pred CeEEEcCCC-------------CCccEEEEcCCchhhhCCcccc----C-----CCCcEEeCHhhHhhccccCC--C-CC
Q 040718 4 GLISVDRWT-------------EGSQVYFLTHLHSDHTQGLSSA----W-----ARGPLFCSRLTAKLFPLKFP--G-LD 58 (403)
Q Consensus 4 ~~i~VD~f~-------------~~i~aifLTH~H~DHi~GL~~~----~-----~~~pIy~s~~T~~lL~~~~~--~-~~ 58 (403)
..++||+-. ..+++|||||.|+||+.||+.+ + ...+||+++.+.+.+...+. . ..
T Consensus 31 ~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~ 110 (303)
T TIGR02649 31 GLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWT 110 (303)
T ss_pred CEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhccccc
Confidence 579999954 1378999999999999999864 1 23689999999887754221 0 00
Q ss_pred --ccceEeccCCCeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEE--------------------------
Q 040718 59 --LSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRG-------------------------- 110 (403)
Q Consensus 59 --~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~-------------------------- 110 (403)
...+..+..++.+.+ ++++|+++++.|... +++|+|+.
T Consensus 111 ~~~~~~~~i~~~~~~~~----------~~~~v~~~~~~H~~~----~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L 176 (303)
T TIGR02649 111 DYPLEIVEIGAGEILDD----------GLRKVTAYPLEHPLE----CYGYRIEEHDKPGALNAQALKAAGVPPGPLFQEL 176 (303)
T ss_pred CCceEEEEcCCCceEec----------CCeEEEEEEccCccc----eEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHh
Confidence 112334444443332 679999999999766 99999986
Q ss_pred ------------------------CCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCC
Q 040718 111 ------------------------DFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNS 158 (403)
Q Consensus 111 ------------------------~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p 158 (403)
++.+++|+||++... .+.+.+ .++|+||+||||.+.
T Consensus 177 ~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~----------~~~~~~--~~adlLi~Eat~~~~ 236 (303)
T TIGR02649 177 KAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCD----------AALDLA--KGVDVMVHEATLDIT 236 (303)
T ss_pred cCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChH----------HHHHHh--cCCCEEEEeccCChh
Confidence 345899999999743 244555 789999999999653
No 17
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.50 E-value=2.2e-13 Score=134.79 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=86.7
Q ss_pred CccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCCCCC------ccceEeccCCCeEEEEeecCCCCCcCc
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFPGLD------LSLIRVLDIGSWHSISVVSPSSGEKTF 85 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~~~~------~~~i~~l~~~~~~~i~l~~~~~~~~~~ 85 (403)
.+++|||||.|.||+.||+.+ ....+||+++.|.+.+...++-++ ...++++..++++++. ..++
T Consensus 80 ~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~-------~~~~ 152 (302)
T PRK05184 80 PIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVP-------GLPG 152 (302)
T ss_pred cccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEec-------CCCC
Confidence 479999999999999999876 256789999999988865422111 1123455555665551 1137
Q ss_pred eEEEEEecCCCC------CC---CCceEEEEEE--ECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCC
Q 040718 86 VEVIAIDANHCP------GI---LGCSVMLLFR--GDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNT 154 (403)
Q Consensus 86 v~Vt~~~A~H~p------G~---~~~Sv~fl~e--~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~T 154 (403)
++|+++++.|.. |. ...+++|+|+ .++++++|++|....++ .+++.+ .++|+||+|+|
T Consensus 153 ~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~---------~~~~~~--~gaDlli~da~ 221 (302)
T PRK05184 153 LRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTD---------ALRARL--AGADCVLFDGT 221 (302)
T ss_pred cEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCH---------HHHHHH--hcCCEEEEeCC
Confidence 999999997620 00 0238999996 66778999988754432 356667 67999999999
Q ss_pred C
Q 040718 155 Y 155 (403)
Q Consensus 155 y 155 (403)
+
T Consensus 222 ~ 222 (302)
T PRK05184 222 L 222 (302)
T ss_pred C
Confidence 4
No 18
>PRK02126 ribonuclease Z; Provisional
Probab=99.42 E-value=1.7e-12 Score=130.23 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=94.7
Q ss_pred CeEEEcCCC---------CCccEEEEcCCchhhhCCcccc--C-----CCCcEEeCHhhHhhccccCCCC--------Cc
Q 040718 4 GLISVDRWT---------EGSQVYFLTHLHSDHTQGLSSA--W-----ARGPLFCSRLTAKLFPLKFPGL--------DL 59 (403)
Q Consensus 4 ~~i~VD~f~---------~~i~aifLTH~H~DHi~GL~~~--~-----~~~pIy~s~~T~~lL~~~~~~~--------~~ 59 (403)
..++||+-. ..+++|||||.|.||++|++.+ + ...+||+++.|.+.+...+..+ ..
T Consensus 28 ~~iLiD~G~~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~ 107 (334)
T PRK02126 28 RALLFDLGDLHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPT 107 (334)
T ss_pred eEEEEcCCCHHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhccccccCcccCCC
Confidence 458888853 3589999999999999999876 2 2468999999999887655311 00
Q ss_pred -cceEeccC-CCe-----E------EEEee------cCCCCCcCceEEEEEecCCCCCCCCceEEEEEEE----------
Q 040718 60 -SLIRVLDI-GSW-----H------SISVV------SPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRG---------- 110 (403)
Q Consensus 60 -~~i~~l~~-~~~-----~------~i~l~------~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~---------- 110 (403)
-.+.++++ .++ + ..+.. ....-..++++|+++++.|... |++|+|+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~vp----~~gy~~~e~~~~~~~~ek 183 (334)
T PRK02126 108 TFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGIP----CLAFALEEKAHINIDKNR 183 (334)
T ss_pred ceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCCc----eeEEEEEecCCcCcCHHH
Confidence 01111211 000 0 00000 0000123789999999999655 99999984
Q ss_pred ---------------------------------------------------------CCeeEEEECCcCcCCCchhhhcc
Q 040718 111 ---------------------------------------------------------DFGCLLYTGDFRWEASNERAEIG 133 (403)
Q Consensus 111 ---------------------------------------------------------~~~~vlyTGD~r~~~~~~~~~~~ 133 (403)
.+.+++|+||+...++.
T Consensus 184 ~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~------ 257 (334)
T PRK02126 184 LAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEEN------ 257 (334)
T ss_pred HHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCccc------
Confidence 24479999999987642
Q ss_pred chhhhhhccCCCccEEEEcCCCCCC
Q 040718 134 RNTLVKALKDDVVDILYLDNTYCNS 158 (403)
Q Consensus 134 ~~~ll~~l~~~~~DvLilD~Ty~~p 158 (403)
++.+.+.+ .++|+||+||||.+.
T Consensus 258 ~~~l~~~a--~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 258 LARIVELA--AGVDLLFIEAVFLDE 280 (334)
T ss_pred HHHHHHHH--cCCCEEEEEcccChH
Confidence 11244555 689999999999864
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.40 E-value=2e-12 Score=121.59 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCCeEEEcCCC------------CCccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCCCCCccceEeccC
Q 040718 2 EKGLISVDRWT------------EGSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDI 67 (403)
Q Consensus 2 ~~~~i~VD~f~------------~~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~ 67 (403)
++..|+||++. ..+++|||||.|.||++++..+ ....+||+++.+++.+... ++. .+..++.
T Consensus 16 ~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~--~~~~~~~ 91 (228)
T PRK00685 16 GGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEK--GVE--KTHPMNI 91 (228)
T ss_pred CCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhc--CCC--ceeeccC
Confidence 34579999853 1478999999999999987764 2467899999988887532 222 4566777
Q ss_pred CCeEEEEeecCCCCCcCceEEEEEecCCCCCC--------CCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhh
Q 040718 68 GSWHSISVVSPSSGEKTFVEVIAIDANHCPGI--------LGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVK 139 (403)
Q Consensus 68 ~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~--------~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~ 139 (403)
++.+++ ++++|+++++.|.+.. .+.+++|+|+.++.+++|+||+.+.++. ..+.
T Consensus 92 ~~~~~~----------~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~--------~~~~ 153 (228)
T PRK00685 92 GGTVEF----------DGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDM--------KLIG 153 (228)
T ss_pred CCcEEE----------CCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHH--------HHHH
Confidence 887776 8899999999995531 0225899999999999999999987643 1222
Q ss_pred hccCCCccEEEEcC
Q 040718 140 ALKDDVVDILYLDN 153 (403)
Q Consensus 140 ~l~~~~~DvLilD~ 153 (403)
.+ .++|++++..
T Consensus 154 ~~--~~~D~~~~~~ 165 (228)
T PRK00685 154 EL--HKPDVALLPI 165 (228)
T ss_pred Hh--hCCCEEEEec
Confidence 22 4689999865
No 20
>PRK00055 ribonuclease Z; Reviewed
Probab=99.23 E-value=6.5e-12 Score=120.51 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCeEEEcCCC-------------CCccEEEEcCCchhhhCCcccc----C-----CCCcEEeCHhhHhhccccCCCCCc-
Q 040718 3 KGLISVDRWT-------------EGSQVYFLTHLHSDHTQGLSSA----W-----ARGPLFCSRLTAKLFPLKFPGLDL- 59 (403)
Q Consensus 3 ~~~i~VD~f~-------------~~i~aifLTH~H~DHi~GL~~~----~-----~~~pIy~s~~T~~lL~~~~~~~~~- 59 (403)
+..++||+.. ..+++|||||.|.||++||+.+ + ...+||+++.+.+++...+.....
T Consensus 29 ~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~ 108 (270)
T PRK00055 29 GELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSL 108 (270)
T ss_pred CcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhce
Confidence 4568999853 1378999999999999999864 1 235799999888776431100000
Q ss_pred c-ceE------ecc------CCCe--EEEEeecCCCCCcCceEEEEEecCC--CCCCCCceEEEEEEECCeeEEEECCcC
Q 040718 60 S-LIR------VLD------IGSW--HSISVVSPSSGEKTFVEVIAIDANH--CPGILGCSVMLLFRGDFGCLLYTGDFR 122 (403)
Q Consensus 60 ~-~i~------~l~------~~~~--~~i~l~~~~~~~~~~v~Vt~~~A~H--~pG~~~~Sv~fl~e~~~~~vlyTGD~r 122 (403)
. .+. .++ .+.+ ..+. . ...+..+.+ .+| +.+ +.+|.++.++.+++|+||+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~g~~~~~--~~~~~i~~----~~~~~~~~~g~~~~y~~Dt~ 176 (270)
T PRK00055 109 GYRIAEKDKPGKLDAEKLKALGVPPGPLFG--K----LKRGEDVTL--EDGRIINP----ADVLGPPRKGRKVAYCGDTR 176 (270)
T ss_pred eEEEEEcCCCCCCCHHHHHHCCCCCCchHH--H----hhCCCeEEe--CCCcEEeH----HHeeccCCCCcEEEEeCCCC
Confidence 0 000 000 0000 0000 0 001233332 234 235 78899988888999999999
Q ss_pred cCCCchhhhccchhhhhhccCCCccEEEEcCCCCCCC
Q 040718 123 WEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSS 159 (403)
Q Consensus 123 ~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p~ 159 (403)
+.+. +.+.+ .++|+||+||||..+.
T Consensus 177 ~~~~----------~~~~~--~~~d~li~E~~~~~~~ 201 (270)
T PRK00055 177 PCEA----------LVELA--KGADLLVHEATFGDED 201 (270)
T ss_pred CcHH----------HHHHh--CCCCEEEEeccCCcch
Confidence 8643 34455 5799999999998763
No 21
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.22 E-value=6.3e-11 Score=105.69 Aligned_cols=108 Identities=28% Similarity=0.389 Sum_probs=80.3
Q ss_pred CCeEEEcCCC---------------CCccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCC------CC--
Q 040718 3 KGLISVDRWT---------------EGSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFP------GL-- 57 (403)
Q Consensus 3 ~~~i~VD~f~---------------~~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~------~~-- 57 (403)
+..|+||+.. ..++++|+||.|.||++|++.+ ..+.+||+++.+.+.+..... ..
T Consensus 15 ~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (183)
T smart00849 15 GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLLKLGGALGAEAP 94 (183)
T ss_pred CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccchhccccCcCCC
Confidence 4568899862 2578999999999999999865 257889999999988863211 00
Q ss_pred CccceEeccCCCeEEEEeecCCCCCcCceEEEEEec-CCCCCCCCceEEEEEEECCeeEEEECCcCcCCC
Q 040718 58 DLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDA-NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEAS 126 (403)
Q Consensus 58 ~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~ 126 (403)
....+..+..++++.+ ++.+++++++ +|++| +++++++. .+++|+||+.....
T Consensus 95 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~h~~~----~~~~~~~~--~~vl~~gD~~~~~~ 148 (183)
T smart00849 95 PPPPDRTLKDGEELDL----------GGLELEVIHTPGHTPG----SIVLYLPE--GKILFTGDLLFSGG 148 (183)
T ss_pred CCccceecCCCCEEEe----------CCceEEEEECCCCCCC----cEEEEECC--CCEEEECCeeeccC
Confidence 1123445666777766 5677777777 99999 99888864 68999999998764
No 22
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.21 E-value=1.2e-10 Score=117.69 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=92.2
Q ss_pred eEEEcCCC-CCccEEEEcCCchhhhCC--cccc---C-CCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeec
Q 040718 5 LISVDRWT-EGSQVYFLTHLHSDHTQG--LSSA---W-ARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVS 77 (403)
Q Consensus 5 ~i~VD~f~-~~i~aifLTH~H~DHi~G--L~~~---~-~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~ 77 (403)
++.+|++. +.+|+|||||.|.||+.. +..+ . .+.+++++..+.+++.. + +++...+..+..++.+++
T Consensus 99 p~~idp~~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~-~-Gvp~~rv~~v~~Ge~i~i---- 172 (355)
T PRK11709 99 PFVLDPFAIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG-W-GVPKERCIVVKPGDVVKV---- 172 (355)
T ss_pred CcccCHHHCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh-c-CCCcceEEEecCCCcEEE----
Confidence 34566654 579999999999999952 1222 1 34678999988887753 3 465567788899999887
Q ss_pred CCCCCcCceEEEEEecCCCCC-----------------CC-CceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhh
Q 040718 78 PSSGEKTFVEVIAIDANHCPG-----------------IL-GCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVK 139 (403)
Q Consensus 78 ~~~~~~~~v~Vt~~~A~H~pG-----------------~~-~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~ 139 (403)
++++|+++++.|..+ +. +.+++|+|+.++++|+|+||+.+.+.. .+
T Consensus 173 ------g~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~----------~~ 236 (355)
T PRK11709 173 ------KDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYF----------AK 236 (355)
T ss_pred ------CCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHH----------HH
Confidence 899999999955211 01 236899999999999999999987542 12
Q ss_pred hccCCCccEEEEcCC
Q 040718 140 ALKDDVVDILYLDNT 154 (403)
Q Consensus 140 ~l~~~~~DvLilD~T 154 (403)
..+..++|++++...
T Consensus 237 i~~~~~iDvall~iG 251 (355)
T PRK11709 237 HGNDHQIDVALGSYG 251 (355)
T ss_pred HHhcCCCCEEEecCC
Confidence 223357999999553
No 23
>PRK04286 hypothetical protein; Provisional
Probab=99.15 E-value=2.3e-10 Score=113.16 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=75.1
Q ss_pred CccEEEEcCCchhhhCCcccc-C------CCCcEEeCHhhHhh-----ccc-------cCCC-CCc-cceEeccCCCeEE
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA-W------ARGPLFCSRLTAKL-----FPL-------KFPG-LDL-SLIRVLDIGSWHS 72 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~-~------~~~pIy~s~~T~~l-----L~~-------~~~~-~~~-~~i~~l~~~~~~~ 72 (403)
.+++|||||.|.||+.|+... + ...+||++..+... +.. .+.. +.. .....+..++.+.
T Consensus 65 ~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 144 (298)
T PRK04286 65 KADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFR 144 (298)
T ss_pred cCCEEEecCCccccCCCccccccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEE
Confidence 479999999999999988653 1 12467776554421 100 0000 000 0112344566666
Q ss_pred EEeecCCCCCcCceEEEEE-ecCCC-C-CCCCceEEEEEEECCeeEEEECCcCc-CCCchhhhccchhhhhhccCCCccE
Q 040718 73 ISVVSPSSGEKTFVEVIAI-DANHC-P-GILGCSVMLLFRGDFGCLLYTGDFRW-EASNERAEIGRNTLVKALKDDVVDI 148 (403)
Q Consensus 73 i~l~~~~~~~~~~v~Vt~~-~A~H~-p-G~~~~Sv~fl~e~~~~~vlyTGD~r~-~~~~~~~~~~~~~ll~~l~~~~~Dv 148 (403)
+ ++++|++. +.+|. + ...+..++|.|+.++.+++|+||+.. ..+ .+.+.+...++|+
T Consensus 145 i----------g~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~---------~~~~~l~~~d~dl 205 (298)
T PRK04286 145 F----------GGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLND---------EAVEFILEKKPDV 205 (298)
T ss_pred E----------CCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCH---------HHHHHHhcCCCCE
Confidence 6 78999976 77993 2 21233445566788889999999993 222 2445565569999
Q ss_pred EEEcC
Q 040718 149 LYLDN 153 (403)
Q Consensus 149 LilD~ 153 (403)
|++|+
T Consensus 206 Li~~~ 210 (298)
T PRK04286 206 VIIGG 210 (298)
T ss_pred EEeCC
Confidence 99998
No 24
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.08 E-value=5.3e-10 Score=107.65 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=73.5
Q ss_pred CeEEEcCCCC------------CccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCCCCCccceEeccCCC
Q 040718 4 GLISVDRWTE------------GSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGS 69 (403)
Q Consensus 4 ~~i~VD~f~~------------~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~ 69 (403)
..++||+... .+++||+||.|.||++|+..+ ..+.+||+++.+ .++.. ...+..++
T Consensus 21 ~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~------~~~~~----~~~v~~g~ 90 (248)
T TIGR03413 21 QAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE------RIPGI----THPVKDGD 90 (248)
T ss_pred CEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc------cCCCC----cEEeCCCC
Confidence 4789999741 478999999999999999875 235889998765 12221 24556677
Q ss_pred eEEEEeecCCCCCcCceEEEEEec-CCCCCCCCceEEEEEEECCeeEEEECCcCcCC
Q 040718 70 WHSISVVSPSSGEKTFVEVIAIDA-NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEA 125 (403)
Q Consensus 70 ~~~i~l~~~~~~~~~~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~ 125 (403)
.+.+ ++..|+++.+ ||++| +++|+++. .+++||||+.+..
T Consensus 91 ~~~~----------g~~~i~v~~tpGHT~g----~i~~~~~~--~~~lftGDtl~~~ 131 (248)
T TIGR03413 91 TVTL----------GGLEFEVLAVPGHTLG----HIAYYLPD--SPALFCGDTLFSA 131 (248)
T ss_pred EEEE----------CCEEEEEEECCCCCcc----cEEEEECC--CCEEEEcCccccC
Confidence 7766 7888998887 89999 99999874 5799999998764
No 25
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.06 E-value=6.6e-10 Score=113.80 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=77.7
Q ss_pred CCeEEEcCCC-----------------CCccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccce
Q 040718 3 KGLISVDRWT-----------------EGSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLI 62 (403)
Q Consensus 3 ~~~i~VD~f~-----------------~~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i 62 (403)
+..++||+.. ..+++||+||.|.||++|++.+ +++.+|||++.+.+.+...+.. ...+
T Consensus 41 ~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~--~~~~ 118 (394)
T PRK11921 41 EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQ--DWNF 118 (394)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCC--CCce
Confidence 3468999842 1478999999999999999865 4678999999998887643321 1134
Q ss_pred EeccCCCeEEEEeecCCCCCcCceEEEEEec-C-CCCCCCCceEEEEEEECCeeEEEECCcCc
Q 040718 63 RVLDIGSWHSISVVSPSSGEKTFVEVIAIDA-N-HCPGILGCSVMLLFRGDFGCLLYTGDFRW 123 (403)
Q Consensus 63 ~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A-~-H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~ 123 (403)
..+..++.+.+ ++.+++++.+ + |+|| +++++++. .++|||||+--
T Consensus 119 ~~v~~g~~l~l----------G~~~l~~i~tP~~H~p~----~~~~y~~~--~~vLFsgD~fG 165 (394)
T PRK11921 119 VVVKTGDRLEI----------GSNELIFIEAPMLHWPD----SMFTYLTG--DNILFSNDAFG 165 (394)
T ss_pred EEeCCCCEEee----------CCeEEEEEeCCCCCCCC----ceEEEEcC--CCEEEecCccc
Confidence 55667777766 7889999976 4 9999 98888754 46999999643
No 26
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.04 E-value=1e-09 Score=109.71 Aligned_cols=98 Identities=27% Similarity=0.340 Sum_probs=75.0
Q ss_pred eEEEcCCC------------CCccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCCCCCccceEeccCCCe
Q 040718 5 LISVDRWT------------EGSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSW 70 (403)
Q Consensus 5 ~i~VD~f~------------~~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~ 70 (403)
.++||+.. ..+++|++||.|.||++|+..+ .++.+||++..+.+.+ +++. ..+..++.
T Consensus 100 ~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i----~~~d----~~v~dGd~ 171 (329)
T PLN02398 100 VGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRI----PGID----IVLKDGDK 171 (329)
T ss_pred EEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhc----cCCc----EEeCCCCE
Confidence 47899864 2478999999999999999876 3468999998766543 2221 34556666
Q ss_pred EEEEeecCCCCCcCceEEEEEec-CCCCCCCCceEEEEEEECCeeEEEECCcCcCCC
Q 040718 71 HSISVVSPSSGEKTFVEVIAIDA-NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEAS 126 (403)
Q Consensus 71 ~~i~l~~~~~~~~~~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~ 126 (403)
+.+ ++.+|+++.+ ||++| +++|+++. ..++||||+-+...
T Consensus 172 i~l----------gg~~l~vi~tPGHT~G----hI~~~~~~--~~vLFtGDtLf~~g 212 (329)
T PLN02398 172 WMF----------AGHEVLVMETPGHTRG----HISFYFPG--SGAIFTGDTLFSLS 212 (329)
T ss_pred EEE----------CCeEEEEEeCCCcCCC----CEEEEECC--CCEEEECCCcCCCC
Confidence 665 7788998887 99999 99998753 35999999988653
No 27
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.04 E-value=5.4e-10 Score=108.78 Aligned_cols=137 Identities=15% Similarity=0.038 Sum_probs=86.5
Q ss_pred CCCeEEEc-CCC----------CCccEEEEcCCchhhhCCcccc-----C-----CCCcEEeCHhhHhhccc------cC
Q 040718 2 EKGLISVD-RWT----------EGSQVYFLTHLHSDHTQGLSSA-----W-----ARGPLFCSRLTAKLFPL------KF 54 (403)
Q Consensus 2 ~~~~i~VD-~f~----------~~i~aifLTH~H~DHi~GL~~~-----~-----~~~pIy~s~~T~~lL~~------~~ 54 (403)
++-.|+.| +-. ..++++||||+|.||++||+.. | ....||.++.+.+.++. .+
T Consensus 17 ~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~ 96 (277)
T TIGR02650 17 SPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAA 96 (277)
T ss_pred CchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHh
Confidence 34567888 422 2478999999999999999642 1 12359999987776651 12
Q ss_pred CCCCc--cceEeccCCCeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEE----------------------
Q 040718 55 PGLDL--SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRG---------------------- 110 (403)
Q Consensus 55 ~~~~~--~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~---------------------- 110 (403)
..+.. -...+++.++.+.+. . ......|.++++.|.. ....|.+|.|..
T Consensus 97 ~~~~~~~~~~~~~~~~e~~~~r--~----~~~~~~V~~f~t~H~v-~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~ 169 (277)
T TIGR02650 97 NEDLFFFFNHHLEEEDERFFLD--A----AGFFKRVQPFFRKHHA-SEESFFGHHFEERRKKKEEEFGGDDKKEARLLKE 169 (277)
T ss_pred hhhhccCcccCCCCCCcEEEee--c----CCccEEEecCcccccc-CccCccCeEEEEEeecchHhHcCCCHHHHHHHHH
Confidence 11111 112334444433331 0 0014789999999973 112378887752
Q ss_pred ----------CCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCCC
Q 040718 111 ----------DFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSS 159 (403)
Q Consensus 111 ----------~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p~ 159 (403)
...+|+||||++.... +.. .++|+||.||||.+..
T Consensus 170 ~gg~~~t~e~~~~~vvysGDT~~~~~------------~~a--~~adlLIhEaTf~d~~ 214 (277)
T TIGR02650 170 EGGDDFTREEHHKILLIIGDDLAADD------------EEE--EGGEELIHECCFFDDA 214 (277)
T ss_pred hCCccccccccCcEEEEeCCCCCCCh------------HHh--cCCCEEEEeccccccc
Confidence 0246999999987642 223 6899999999998864
No 28
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.03 E-value=1.3e-09 Score=105.65 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=72.2
Q ss_pred CeEEEcCCC------------CCccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccCC
Q 040718 4 GLISVDRWT------------EGSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIG 68 (403)
Q Consensus 4 ~~i~VD~f~------------~~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~ 68 (403)
..++||+.. -.+++||+||.|.||++|+..+ +.+.+||++... ..++. ...+..+
T Consensus 24 ~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~------~~~~~----~~~v~~g 93 (258)
T PLN02469 24 DAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLD------NVKGC----THPVENG 93 (258)
T ss_pred eEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechh------cCCCC----CeEeCCC
Confidence 468999864 1478999999999999999875 457899997543 11121 1345556
Q ss_pred CeEEEEeecCCCCCcC-ceEEEEEec-CCCCCCCCceEEEEEEEC--CeeEEEECCcCcCCC
Q 040718 69 SWHSISVVSPSSGEKT-FVEVIAIDA-NHCPGILGCSVMLLFRGD--FGCLLYTGDFRWEAS 126 (403)
Q Consensus 69 ~~~~i~l~~~~~~~~~-~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~--~~~vlyTGD~r~~~~ 126 (403)
+.+.+ + ++.++++.+ ||++| +++|+++.. ...++||||+.+...
T Consensus 94 d~i~l----------g~~~~~~vi~tPGHT~g----hi~~~~~~~~~~~~~lFtGDtLf~~g 141 (258)
T PLN02469 94 DKLSL----------GKDVNILALHTPCHTKG----HISYYVTGKEGEDPAVFTGDTLFIAG 141 (258)
T ss_pred CEEEE----------CCceEEEEEECCCCCCC----CEEEEeccCCCCCCEEEecCcccCCC
Confidence 66665 4 467888887 99999 999998743 346999999887643
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.98 E-value=1.8e-09 Score=113.40 Aligned_cols=91 Identities=19% Similarity=0.302 Sum_probs=70.2
Q ss_pred CccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeecCCCCCcC-ceEEE
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKT-FVEVI 89 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~-~v~Vt 89 (403)
.+++||+||.|.||++|++.+ +++.+|||++.+.+++...+. .+...+..+..++.+.+ + +.+++
T Consensus 71 ~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~-~~~~~~~~v~~G~~l~l----------G~~~~l~ 139 (479)
T PRK05452 71 DIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHH-HPEWNFNVVKTGDTLDI----------GNGKQLI 139 (479)
T ss_pred hCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHhhc-CCcCeEEEeCCCCEEec----------CCCcEEE
Confidence 478999999999999999865 367899999999988864332 12224566777777766 4 46788
Q ss_pred EEec--CCCCCCCCceEEEEEEECCeeEEEECCc
Q 040718 90 AIDA--NHCPGILGCSVMLLFRGDFGCLLYTGDF 121 (403)
Q Consensus 90 ~~~A--~H~pG~~~~Sv~fl~e~~~~~vlyTGD~ 121 (403)
++.+ .|+|| +++++++. .++|||||+
T Consensus 140 ~i~tP~~H~pg----s~~~y~~~--~~vLFsgD~ 167 (479)
T PRK05452 140 FVETPMLHWPD----SMMTYLTG--DAVLFSNDA 167 (479)
T ss_pred EEECCCCCCCC----ceEEEEcC--CCEEEeccc
Confidence 8877 49999 98888764 469999996
No 30
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.93 E-value=4.4e-10 Score=110.88 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=82.2
Q ss_pred CCeEEEcCCC-------------CCccEEEEcCCchhhhCCcccc----C----C-CCcEEeCHhhHhhccccC--C---
Q 040718 3 KGLISVDRWT-------------EGSQVYFLTHLHSDHTQGLSSA----W----A-RGPLFCSRLTAKLFPLKF--P--- 55 (403)
Q Consensus 3 ~~~i~VD~f~-------------~~i~aifLTH~H~DHi~GL~~~----~----~-~~pIy~s~~T~~lL~~~~--~--- 55 (403)
+..+++|+.. ..+++|||||.|.||+.||+.+ + . ...||+++..++.+..-+ .
T Consensus 29 ~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~ 108 (292)
T COG1234 29 GEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSK 108 (292)
T ss_pred CeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcccc
Confidence 4567789863 1478999999999999999853 1 1 257999976665554311 0
Q ss_pred -CCCccceEeccCCCeEEEE--------------eecCCC-CC---------cCceEEEEEecCCC----CCCCCceEEE
Q 040718 56 -GLDLSLIRVLDIGSWHSIS--------------VVSPSS-GE---------KTFVEVIAIDANHC----PGILGCSVML 106 (403)
Q Consensus 56 -~~~~~~i~~l~~~~~~~i~--------------l~~~~~-~~---------~~~v~Vt~~~A~H~----pG~~~~Sv~f 106 (403)
.++ .....+.. ..+.+. +..++. +. ..+..++.+.++|+ .- ...+
T Consensus 109 ~~~~-i~~~e~~~-~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~----~~~~ 182 (292)
T COG1234 109 LTYE-IIGHEIEE-DAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVI----TPAD 182 (292)
T ss_pred cceE-EEEEEecc-CceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeec----CHHH
Confidence 000 01111110 011110 000000 00 01678888899997 32 3333
Q ss_pred EEEEC--CeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCC
Q 040718 107 LFRGD--FGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNS 158 (403)
Q Consensus 107 l~e~~--~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p 158 (403)
++... +.+|+||||++.... +.+.. +++|+||.||||.+.
T Consensus 183 ~~~~~~~G~~v~ysGDT~p~~~----------~~~~a--~~aDlLiHEat~~~~ 224 (292)
T COG1234 183 RIGEPRKGKSVVYSGDTRPCDE----------LIDLA--KGADLLIHEATFEDD 224 (292)
T ss_pred hccccCCCcEEEEECCCCCCHH----------HHHHh--cCCCEEEEeccCCch
Confidence 44333 469999999999865 34444 899999999999764
No 31
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.92 E-value=4.1e-09 Score=101.70 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=70.3
Q ss_pred CeEEEcCCCC------------CccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccCC
Q 040718 4 GLISVDRWTE------------GSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIG 68 (403)
Q Consensus 4 ~~i~VD~f~~------------~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~ 68 (403)
..++||+... .+++||+||.|.||++|+..+ +.+.+||++..+.. .+. ...+..+
T Consensus 23 ~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~------~~~----~~~v~~g 92 (251)
T PRK10241 23 RCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD------KGT----TQVVKDG 92 (251)
T ss_pred cEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc------cCC----ceEeCCC
Confidence 3689998651 367999999999999999875 45689999765421 111 2345556
Q ss_pred CeEEEEeecCCCCCcCceEEEEEec-CCCCCCCCceEEEEEEECCeeEEEECCcCcCCC
Q 040718 69 SWHSISVVSPSSGEKTFVEVIAIDA-NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEAS 126 (403)
Q Consensus 69 ~~~~i~l~~~~~~~~~~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~ 126 (403)
+.+.+ ++..++++.+ ||++| +++|+.+ .++||||+-+...
T Consensus 93 ~~i~i----------g~~~~~vi~tPGHT~g----hi~~~~~----~~lFtGDtlf~~g 133 (251)
T PRK10241 93 ETAFV----------LGHEFSVFATPGHTLG----HICYFSK----PYLFCGDTLFSGG 133 (251)
T ss_pred CEEEe----------CCcEEEEEEcCCCCcc----ceeeecC----CcEEEcCeeccCC
Confidence 66665 6778888887 99999 9999642 4899999888653
No 32
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.87 E-value=8.8e-09 Score=92.35 Aligned_cols=111 Identities=24% Similarity=0.278 Sum_probs=66.1
Q ss_pred CCCeEEEcCCC---------CCccEEEEcCCchhhhCCccccCCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEE
Q 040718 2 EKGLISVDRWT---------EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHS 72 (403)
Q Consensus 2 ~~~~i~VD~f~---------~~i~aifLTH~H~DHi~GL~~~~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~ 72 (403)
++..|++|+|. ..+++||+||.|.||+..-. + ... ...+..+..++.++
T Consensus 15 ~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~~~-l-~~~--------------------~~~~~vv~~~~~~~ 72 (163)
T PF13483_consen 15 GGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDPET-L-KRL--------------------DRDIHVVAPGGEYR 72 (163)
T ss_dssp TTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CCCC-C-CCH--------------------HTSSEEE-TTEEEE
T ss_pred CCEEEEECCCCCccCcccccCCCCEEEECCCccccCChhH-h-hhc--------------------ccccEEEccceEEE
Confidence 34579999998 25789999999999997411 0 000 11234555566666
Q ss_pred EEeecCCCCCcCceEEEEEecCCC-CC-C-CCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEE
Q 040718 73 ISVVSPSSGEKTFVEVIAIDANHC-PG-I-LGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDIL 149 (403)
Q Consensus 73 i~l~~~~~~~~~~v~Vt~~~A~H~-pG-~-~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvL 149 (403)
+ ++++|+.+++.|. ++ . .+..++|+++.++.+|+|.||.....++ ..+..+ .++|++
T Consensus 73 ~----------~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~--------~~~~~~--~~vDvl 132 (163)
T PF13483_consen 73 F----------GGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDD--------EQLKQL--GKVDVL 132 (163)
T ss_dssp C----------TTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---H--------HHHHHH---S-SEE
T ss_pred E----------eeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCH--------HHHhcc--cCCCEE
Confidence 5 7999999998773 10 0 1347999999999999999999976543 233444 689999
Q ss_pred EEcCC
Q 040718 150 YLDNT 154 (403)
Q Consensus 150 ilD~T 154 (403)
++-..
T Consensus 133 ~~p~~ 137 (163)
T PF13483_consen 133 FLPVG 137 (163)
T ss_dssp EEE--
T ss_pred EecCC
Confidence 99764
No 33
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.86 E-value=8.5e-09 Score=99.67 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=70.1
Q ss_pred eEEEcCCCC--------------CccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccC
Q 040718 5 LISVDRWTE--------------GSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDI 67 (403)
Q Consensus 5 ~i~VD~f~~--------------~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~ 67 (403)
.++||+... .+.+||+||.|.||++|+..+ +.+.++|++... ..... ..+..
T Consensus 38 avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~---------~~~~d--~~l~~ 106 (251)
T PLN02962 38 ALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS---------GSKAD--LFVEP 106 (251)
T ss_pred EEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc---------CCCCC--EEeCC
Confidence 589999631 367899999999999999875 347888886432 11111 23445
Q ss_pred CCeEEEEeecCCCCCcCceEEEEEec-CCCCCCCCceEEEEEEEC----CeeEEEECCcCcCCC
Q 040718 68 GSWHSISVVSPSSGEKTFVEVIAIDA-NHCPGILGCSVMLLFRGD----FGCLLYTGDFRWEAS 126 (403)
Q Consensus 68 ~~~~~i~l~~~~~~~~~~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~----~~~vlyTGD~r~~~~ 126 (403)
++.+.+ +++.++++.+ ||+|| +++|+++.. ...++||||+.+...
T Consensus 107 g~~i~~----------g~~~l~vi~tPGHT~g----~v~~~~~d~~~~~~~~~lftGD~Lf~~g 156 (251)
T PLN02962 107 GDKIYF----------GDLYLEVRATPGHTAG----CVTYVTGEGPDQPQPRMAFTGDALLIRG 156 (251)
T ss_pred CCEEEE----------CCEEEEEEECCCCCcC----cEEEEeccCCCCCccceEEECCeeccCC
Confidence 666655 7888888887 99999 999988532 346999999887653
No 34
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.83 E-value=9.7e-09 Score=98.48 Aligned_cols=139 Identities=22% Similarity=0.308 Sum_probs=92.0
Q ss_pred CCCccEEEEcCCchhhhCCcccc---C---CCCcEEeCHhhHhhcccc------CCCCCcc-----ceEeccCCCeEEEE
Q 040718 12 TEGSQVYFLTHLHSDHTQGLSSA---W---ARGPLFCSRLTAKLFPLK------FPGLDLS-----LIRVLDIGSWHSIS 74 (403)
Q Consensus 12 ~~~i~aifLTH~H~DHi~GL~~~---~---~~~pIy~s~~T~~lL~~~------~~~~~~~-----~i~~l~~~~~~~i~ 74 (403)
+++|+-+||||+|.||+.||--. . ....||+.+.|.+.|+.. ||++... +++.+.+.+...++
T Consensus 110 ~Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt 189 (356)
T COG5212 110 RQSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLT 189 (356)
T ss_pred hhhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeee
Confidence 35688899999999999998532 2 245899999999999763 3443322 34555555555443
Q ss_pred eecCCCCCcCceEEEEEecCCCC--CCCCceEEEEEEEC--CeeEEEECCcCcCCCchh--hhccchhhhhhccCCCccE
Q 040718 75 VVSPSSGEKTFVEVIAIDANHCP--GILGCSVMLLFRGD--FGCLLYTGDFRWEASNER--AEIGRNTLVKALKDDVVDI 148 (403)
Q Consensus 75 l~~~~~~~~~~v~Vt~~~A~H~p--G~~~~Sv~fl~e~~--~~~vlyTGD~r~~~~~~~--~~~~~~~ll~~l~~~~~Dv 148 (403)
+ -.+.+.+++.+|-- |-...|.||+|..+ +..++|.||+..+.-..+ +...|..+.+.+...++.-
T Consensus 190 ~--------t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~Lkg 261 (356)
T COG5212 190 L--------TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKG 261 (356)
T ss_pred e--------eeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCc
Confidence 2 34678899999932 32345689999987 678999999887543211 0111112222233468889
Q ss_pred EEEcCCCCCC
Q 040718 149 LYLDNTYCNS 158 (403)
Q Consensus 149 LilD~Ty~~p 158 (403)
+++||+|.+.
T Consensus 262 iliEcS~P~~ 271 (356)
T COG5212 262 ILIECSYPND 271 (356)
T ss_pred eEEEecCCCC
Confidence 9999999875
No 35
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.83 E-value=1.6e-08 Score=101.37 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=91.2
Q ss_pred CccEEEEcCCchhhhCCcccc---C-----CCCcEEeCHhhHhhcccc------CCCCCcc---------ceEeccCCCe
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA---W-----ARGPLFCSRLTAKLFPLK------FPGLDLS---------LIRVLDIGSW 70 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~---~-----~~~pIy~s~~T~~lL~~~------~~~~~~~---------~i~~l~~~~~ 70 (403)
.+.++||||.|.||+.||--. . ...+||+.+.|.+.|+.. ||++... .+..+.+++.
T Consensus 79 ~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~ 158 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGEL 158 (335)
T ss_pred hhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccce
Confidence 578999999999999998521 2 467899999999999753 3433211 1223334433
Q ss_pred EEEEeecCC---CCCcCceEEEEEecCCCCCC--CCceEEEEEEECC--eeEEEECCcCcCCCc--hhhhccchhhhhhc
Q 040718 71 HSISVVSPS---SGEKTFVEVIAIDANHCPGI--LGCSVMLLFRGDF--GCLLYTGDFRWEASN--ERAEIGRNTLVKAL 141 (403)
Q Consensus 71 ~~i~l~~~~---~~~~~~v~Vt~~~A~H~pG~--~~~Sv~fl~e~~~--~~vlyTGD~r~~~~~--~~~~~~~~~ll~~l 141 (403)
..+.....+ ......+.|++++.+|..+. ...|.+|+|+.+. ..++|.||+..+.-. ..+...|+.+.+.+
T Consensus 159 ~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I 238 (335)
T PF02112_consen 159 IPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKI 238 (335)
T ss_pred eeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhc
Confidence 322100000 00012467888999994431 0127899999875 789999999986421 11222233333344
Q ss_pred cCCCccEEEEcCCCCCC
Q 040718 142 KDDVVDILYLDNTYCNS 158 (403)
Q Consensus 142 ~~~~~DvLilD~Ty~~p 158 (403)
...++..+|+||+|.+.
T Consensus 239 ~~~~LkaI~IEcS~~~~ 255 (335)
T PF02112_consen 239 ASGKLKAIFIECSYPNS 255 (335)
T ss_pred cccccCEEEEEeCCCCC
Confidence 45799999999999975
No 36
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.73 E-value=6.2e-08 Score=90.26 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=68.7
Q ss_pred CeEEEcCCCC----------------CccEEEEcCCchhhhCCccccC--C-CCcEEeCHhhHhhccccCC--------C
Q 040718 4 GLISVDRWTE----------------GSQVYFLTHLHSDHTQGLSSAW--A-RGPLFCSRLTAKLFPLKFP--------G 56 (403)
Q Consensus 4 ~~i~VD~f~~----------------~i~aifLTH~H~DHi~GL~~~~--~-~~pIy~s~~T~~lL~~~~~--------~ 56 (403)
+.++||+-.. .++++++||.|.||++|+..+. . ..++|..+.....+..... .
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEA 115 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccccccc
Confidence 5788888431 3689999999999999998651 2 3677666555444432210 0
Q ss_pred C--C-ccceEeccCCCeEEEEeecCCCCCcCceEEEEEec-CCCCCCCCceEEEEEEECCeeEEEECCcCcCC
Q 040718 57 L--D-LSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDA-NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEA 125 (403)
Q Consensus 57 ~--~-~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A-~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~ 125 (403)
. + ......+..++.+.+ ++..++++++ ||+|| +++|+++.++ ++|+||.-+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~tpGHT~g----~~~~~~~~~~--~l~~gD~~~~~ 172 (252)
T COG0491 116 YAAPGASPLRALEDGDELDL----------GGLELEVLHTPGHTPG----HIVFLLEDGG--VLFTGDTLFAG 172 (252)
T ss_pred CCCCccccceecCCCCEEEe----------cCeEEEEEECCCCCCC----eEEEEECCcc--EEEecceeccC
Confidence 0 0 001112223344443 5566777766 99999 9999998754 99999988865
No 37
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.71 E-value=1.3e-07 Score=100.14 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=107.0
Q ss_pred CCeEEEcC-CC---------------CCccEEEEcCCchhhhCCcccc----CCCCcEEeCHhhHhhcc--------ccC
Q 040718 3 KGLISVDR-WT---------------EGSQVYFLTHLHSDHTQGLSSA----WARGPLFCSRLTAKLFP--------LKF 54 (403)
Q Consensus 3 ~~~i~VD~-f~---------------~~i~aifLTH~H~DHi~GL~~~----~~~~pIy~s~~T~~lL~--------~~~ 54 (403)
+-.|+||+ |. +.+++|+|||.-.=|+|||++. +.+++||+|-++..+=+ .+.
T Consensus 24 ~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~ 103 (764)
T KOG1135|consen 24 GVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHG 103 (764)
T ss_pred CeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhccc
Confidence 44688998 32 2579999999999999999986 34689999977654322 111
Q ss_pred --CCCC----------ccceEeccCCCeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcC
Q 040718 55 --PGLD----------LSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFR 122 (403)
Q Consensus 55 --~~~~----------~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r 122 (403)
+.+. -+.+.++.+.+++.+. +...|+.|++++|||++| ...+.+...++.|+|+-||.
T Consensus 104 ~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~------gk~~Gl~itaynAGhmiG----GsIWkI~k~~E~ivYavd~N 173 (764)
T KOG1135|consen 104 NVGDFDLFSLDDVDAAFDKIIQLKYSQPVALK------GKGSGLTITAYNAGHMIG----GSIWKISKVGEDIVYAVDFN 173 (764)
T ss_pred ccccccccchhhhHHHHhheeeeeccceEEec------cccCceEEeeecCCCccC----ceEEEEEecCceEEEEEecc
Confidence 0011 1357788999998772 334789999999999999 88888888889999999999
Q ss_pred cCCCchhhhccchhhhhhccCCCccEEEEcCCCCCCC-CCCCCHHHHH
Q 040718 123 WEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSS-YAFPSREVAA 169 (403)
Q Consensus 123 ~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p~-~~fp~~~~~~ 169 (403)
...+.. . .-..++.| .++.+||+|+....-. ..+..|+++.
T Consensus 174 HkKe~H--L--NG~~l~~l--~RPsllITda~~~~~~~~~rkkRDe~f 215 (764)
T KOG1135|consen 174 HKKERH--L--NGCSLSGL--NRPSLLITDANHALYSQPRRKKRDEQF 215 (764)
T ss_pred cchhcc--c--CCcccccc--CCcceEEeccccccccccchhHHHHHH
Confidence 876531 0 11234555 7899999999766432 3344555543
No 38
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.56 E-value=8.4e-07 Score=85.60 Aligned_cols=133 Identities=20% Similarity=0.182 Sum_probs=90.7
Q ss_pred CCeEEEcCCCC------------------CccEEEEcCCchhhhCCccc--cC-CCCcEEeCHhhHhhccccCCCCCccc
Q 040718 3 KGLISVDRWTE------------------GSQVYFLTHLHSDHTQGLSS--AW-ARGPLFCSRLTAKLFPLKFPGLDLSL 61 (403)
Q Consensus 3 ~~~i~VD~f~~------------------~i~aifLTH~H~DHi~GL~~--~~-~~~pIy~s~~T~~lL~~~~~~~~~~~ 61 (403)
+..|+||+|.. .+++|+|||.|.||+..-.. .. ...+++..+.....+..+. +++...
T Consensus 23 ~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~~ 101 (258)
T COG2220 23 GKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDLLIRD-GVEAER 101 (258)
T ss_pred CEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHHHHHHHhc-CCCcce
Confidence 45699999752 26899999999999984332 22 2357677766653333333 455556
Q ss_pred eEeccCCCeEEEEeecCCCCCcCceEEEEEecCCCCCC---------CCceEEEEEEECCeeEEEECCcCcCCCchhhhc
Q 040718 62 IRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGI---------LGCSVMLLFRGDFGCLLYTGDFRWEASNERAEI 132 (403)
Q Consensus 62 i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~---------~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~ 132 (403)
+..+.++..+++ ++++|++.++-|.+.. .+..++|+|+.++.+++|.||+.. ..
T Consensus 102 ~~~~~~~~~~~~----------~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~-~~------ 164 (258)
T COG2220 102 VHELGWGDVIEL----------GDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGY-LF------ 164 (258)
T ss_pred EEeecCCceEEe----------cCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccH-HH------
Confidence 777888888877 7888888888774421 134788999999999999999998 21
Q ss_pred cchhhhhhccCCCccEEEEcCCCCC
Q 040718 133 GRNTLVKALKDDVVDILYLDNTYCN 157 (403)
Q Consensus 133 ~~~~ll~~l~~~~~DvLilD~Ty~~ 157 (403)
.........+|++++..--..
T Consensus 165 ----~~~~~~~~~~DvallPig~~~ 185 (258)
T COG2220 165 ----LIIEELDGPVDVALLPIGGYP 185 (258)
T ss_pred ----HhhhhhcCCccEEEeccCCCC
Confidence 111122234899999876443
No 39
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.56 E-value=5.2e-08 Score=86.29 Aligned_cols=110 Identities=22% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCeEEEcCCC-----------------CCccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCC----
Q 040718 2 EKGLISVDRWT-----------------EGSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGL---- 57 (403)
Q Consensus 2 ~~~~i~VD~f~-----------------~~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~---- 57 (403)
+++.|+||+.. ..+++||+||.|.||++|+..+ .....+++...............
T Consensus 14 ~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (194)
T PF00753_consen 14 GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPDRDSASRR 93 (194)
T ss_dssp TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeecccccccccccccccccccc
Confidence 45678899854 2478999999999999999875 34444555544443332111000
Q ss_pred ---CccceEeccCCCeEEEEeecCCCCCcCceEEEEEe-cCCCCCCCCceEEEEEEECCeeEEEECCcCcCCC
Q 040718 58 ---DLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAID-ANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEAS 126 (403)
Q Consensus 58 ---~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~-A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~ 126 (403)
................. +...+.... .+|.++ ++.+...+++++||||+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 94 GPAVPPPPIIDEDEDDLEIG---------GDRILFIIPGPGHGSD------SLIIYLPGGKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHESEEEEEETTTEEEEE---------TTEEEEEEESSSSSTT------EEEEEETTTTEEEEETTSCTTT
T ss_pred ccccccccceeeeccccccc---------ccccccceeccccCCc------ceEEEeCCCcEEEeeeEeccCC
Confidence 00001111222222221 333333333 356554 4445557789999999999764
No 40
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=91.28 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=74.6
Q ss_pred CccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhcccc-C-CCCCccceEeccCCCeEEEEeecCCCCCcCceEEE
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLK-F-PGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVI 89 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~-~-~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt 89 (403)
.++++|+||.|+||+.|++.+ +...++|+.+.|....... + ..++.....+.+......+ ++++++
T Consensus 62 ~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 131 (269)
T COG1235 62 DLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAI----------GGLEVT 131 (269)
T ss_pred ccCeEEEecccHHhhcChHHHHHHhcCCcccccceecccchhhhhccchhhhcCCCCccccccc----------cceeee
Confidence 589999999999999999987 4677888887766555321 0 0111111112222222222 333333
Q ss_pred EEecCCCCCC--------------CCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCC
Q 040718 90 AIDANHCPGI--------------LGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTY 155 (403)
Q Consensus 90 ~~~A~H~pG~--------------~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty 155 (403)
..+..|-+=. .+...+|..+...+.+.|++|+...++..+ ..+.. ....+.++.+.++
T Consensus 132 ~~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d------~~l~~--~~~~~~~~~~~~~ 203 (269)
T COG1235 132 PFPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHD------VELLD--NGLYPLDIKDRIL 203 (269)
T ss_pred cCCCCCccccCCCcccccCcccccccccceeeeeeeeccEEEccccccCcchhH------HHHhc--CCccceeeeeccc
Confidence 3333331100 011566666666678999999999876421 12222 3678999999999
Q ss_pred CCC
Q 040718 156 CNS 158 (403)
Q Consensus 156 ~~p 158 (403)
..+
T Consensus 204 ~~~ 206 (269)
T COG1235 204 PDP 206 (269)
T ss_pred ccc
Confidence 876
No 41
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.55 E-value=1.9e-07 Score=90.29 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=68.9
Q ss_pred CccEEEEcCCchhhhCCcccc---C-CCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeecCCCCCcCceEEE
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA---W-ARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVI 89 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~---~-~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt 89 (403)
.+.+||.||-|.||+||+..+ + ++..+|... ..+.+++. ..+..++.+.+ ++++|+
T Consensus 51 ~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~------~~r~~~i~----~~~~~~e~~~~----------~g~~v~ 110 (265)
T KOG0813|consen 51 RLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA------DDRIPGIT----RGLKDGETVTV----------GGLEVR 110 (265)
T ss_pred ceeEEEeccccccccCcHHHHHhhccCCcEEecCC------hhcCcccc----ccCCCCcEEEE----------CCEEEE
Confidence 468999999999999999875 2 356677764 23344433 23566777777 899999
Q ss_pred EEec-CCCCCCCCceEEEEEE-ECCeeEEEECCcCcCCCc
Q 040718 90 AIDA-NHCPGILGCSVMLLFR-GDFGCLLYTGDFRWEASN 127 (403)
Q Consensus 90 ~~~A-~H~pG~~~~Sv~fl~e-~~~~~vlyTGD~r~~~~~ 127 (403)
++.+ ||+.| ++.|++. ..+.+.+||||+.+...+
T Consensus 111 ~l~TPgHT~~----hi~~~~~~~~~e~~iFtGDtlf~~Gc 146 (265)
T KOG0813|consen 111 CLHTPGHTAG----HICYYVTESTGERAIFTGDTLFGAGC 146 (265)
T ss_pred EEeCCCccCC----cEEEEeecCCCCCeEEeCCceeecCc
Confidence 9998 99999 9999998 345679999999886543
No 42
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.13 E-value=1.1e-05 Score=88.16 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=71.7
Q ss_pred ccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeecCCCCCcCceEEEEE
Q 040718 15 SQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAI 91 (403)
Q Consensus 15 i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~ 91 (403)
+|++++||.|.||++|+..+ +.-..||.+.... ..+ .....+..|+.+++ ++++++++
T Consensus 491 ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~------~~~---~~~~~~~~G~~~~~----------~~~~~~vL 551 (662)
T TIGR00361 491 LEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFV------EEG---VAIEECKRGDVWQW----------QGLQFHVL 551 (662)
T ss_pred cCEEEECCCchhhhCcHHHHHHhCCccEEEeccchh------hCC---CceEecCCCCEEeE----------CCEEEEEE
Confidence 78999999999999999875 3445677654311 001 12344556666665 67888887
Q ss_pred ecCC--CCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEE
Q 040718 92 DANH--CPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYL 151 (403)
Q Consensus 92 ~A~H--~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLil 151 (403)
..+. ..+.+..|+.+.++.++.++++|||.....+. .+.+.....++|+|.+
T Consensus 552 ~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~--------~l~~~~~~l~~dvLk~ 605 (662)
T TIGR00361 552 SPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQ--------EVMRVFPNIKADVLQV 605 (662)
T ss_pred CCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHH--------HHHhcccCcCccEEEe
Confidence 5432 11235668999999999999999999775431 2333222346677765
No 43
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.12 E-value=1.1e-05 Score=82.05 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=81.5
Q ss_pred CCeEEEcCCCC-----------------CccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccce
Q 040718 3 KGLISVDRWTE-----------------GSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLI 62 (403)
Q Consensus 3 ~~~i~VD~f~~-----------------~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i 62 (403)
+..++||++.+ .+++|+++|.-.||.++|+.+ .++.+|+||...+++|+..+. .+ .++
T Consensus 44 ~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~~~-~~-~~~ 121 (388)
T COG0426 44 DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKGFYH-DP-EWF 121 (388)
T ss_pred CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHhcC-Cc-cce
Confidence 45689999752 489999999999999999975 579999999999999976543 22 236
Q ss_pred EeccCCCeEEEEeecCCCCCcCceEEEEEec--CCCCCCCCceEEEEEEECCeeEEEECCcCcCC
Q 040718 63 RVLDIGSWHSISVVSPSSGEKTFVEVIAIDA--NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEA 125 (403)
Q Consensus 63 ~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~A--~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~ 125 (403)
....-|+...+ ||-++++++| -|.|+ + |+.+.. ..+||||+|+....
T Consensus 122 ~ivk~Gd~ldl----------Gg~tL~Fi~ap~LHWPd----~-m~TYd~-~~kILFS~D~fG~h 170 (388)
T COG0426 122 KIVKTGDTLDL----------GGHTLKFIPAPFLHWPD----T-MFTYDP-EDKILFSCDAFGAH 170 (388)
T ss_pred eecCCCCEecc----------CCcEEEEEeCCCCCCCC----c-eeEeec-CCcEEEcccccccc
Confidence 77777777776 7888898887 89999 6 444332 34699999987754
No 44
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.04 E-value=3e-05 Score=76.58 Aligned_cols=100 Identities=20% Similarity=0.179 Sum_probs=63.6
Q ss_pred CccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHh--hccccCCCCCccceEeccCCCeEEEEeecCCCCCcCceEE
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAK--LFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEV 88 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~--lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~V 88 (403)
.+|.++|||.|.||+||+..+ +.-..+|....... ....+-.+. ......-|+.+.+ +++.+
T Consensus 90 ~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~G~~~~~----------~~~~f 156 (293)
T COG2333 90 KLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAGI---PVRSCKAGDSWQW----------GGVVF 156 (293)
T ss_pred cccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcCC---ceeccccCceEEE----------CCeEE
Confidence 478999999999999999875 23334554332111 000000011 2334445666665 67777
Q ss_pred EEEec-CCCC-CCCCceEEEEEEECCeeEEEECCcCcCCC
Q 040718 89 IAIDA-NHCP-GILGCSVMLLFRGDFGCLLYTGDFRWEAS 126 (403)
Q Consensus 89 t~~~A-~H~p-G~~~~Sv~fl~e~~~~~vlyTGD~r~~~~ 126 (403)
+++.. +... +.+..|+.+.++.++.++++|||.-...+
T Consensus 157 ~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~E 196 (293)
T COG2333 157 QVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKGE 196 (293)
T ss_pred EEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchhH
Confidence 76643 4422 23577999999999999999999887654
No 45
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.01 E-value=1.2e-06 Score=93.78 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=76.9
Q ss_pred ccEEEEcCCchhhhCCcccc---C-------CCCcE--EeCHhhHhhcccc--CCCCCccceEecc-CCCeEEEEeecCC
Q 040718 15 SQVYFLTHLHSDHTQGLSSA---W-------ARGPL--FCSRLTAKLFPLK--FPGLDLSLIRVLD-IGSWHSISVVSPS 79 (403)
Q Consensus 15 i~aifLTH~H~DHi~GL~~~---~-------~~~pI--y~s~~T~~lL~~~--~~~~~~~~i~~l~-~~~~~~i~l~~~~ 79 (403)
.++|||||.|+||..||... | ..-|+ .+++.-..+|+.. .+.+......-+. .+.-+ .-..++
T Consensus 502 LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf--~~~s~~ 579 (746)
T KOG2121|consen 502 LRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALF--AQKSPD 579 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhh--hccCcc
Confidence 57899999999999999863 2 12344 3445555555421 1111111000000 00000 000010
Q ss_pred ----------CCCcCceEEEEEecCCCCCCCCceEEEEEEEC-CeeEEEECCcCcCCCchhhhccchhhhhhccCCCccE
Q 040718 80 ----------SGEKTFVEVIAIDANHCPGILGCSVMLLFRGD-FGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDI 148 (403)
Q Consensus 80 ----------~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~-~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~Dv 148 (403)
....+...+...++-|||- |++..+... +.+++|+||+|..... .+. ..+.|+
T Consensus 580 s~~~~~~~~~l~~~~l~~i~tc~viHCp~----syg~~i~~~~~~Ki~YSGDTrP~~~~----------v~~--g~datl 643 (746)
T KOG2121|consen 580 SVPERLLSYLLRELGLESIQTCPVIHCPQ----SYGCSITHGSGWKIVYSGDTRPCEDL----------VKA--GKDATL 643 (746)
T ss_pred ccchhhhhHHHHhcCceeEEecCcEecCh----hhceeEecccceEEEEcCCCCCchhH----------hhh--ccCCce
Confidence 0124678899999999998 888877664 4699999999997653 222 378999
Q ss_pred EEEcCCCCCC
Q 040718 149 LYLDNTYCNS 158 (403)
Q Consensus 149 LilD~Ty~~p 158 (403)
||.|+|+.+.
T Consensus 644 LIHEAT~ED~ 653 (746)
T KOG2121|consen 644 LIHEATLEDD 653 (746)
T ss_pred EEeehhhchh
Confidence 9999999875
No 46
>PRK11539 ComEC family competence protein; Provisional
Probab=97.86 E-value=4.5e-05 Score=84.59 Aligned_cols=88 Identities=19% Similarity=0.107 Sum_probs=60.3
Q ss_pred ccEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeecCCCCCcCceEEEEE
Q 040718 15 SQVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAI 91 (403)
Q Consensus 15 i~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~ 91 (403)
+|++++||.|.||++|+..+ ++...||.+.... + ..+...++..+. ++++++++
T Consensus 552 lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~--------~-----~~~~~~g~~~~~----------~~~~~~vL 608 (755)
T PRK11539 552 PEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWA--------N-----HLPCVRGEQWQW----------QGLTFSVH 608 (755)
T ss_pred cCEEEeCCCCcccCCCHHHHHHhCCcceeeccCccc--------C-----cccccCCCeEeE----------CCEEEEEE
Confidence 78999999999999999876 4556777653111 0 112334555554 67777777
Q ss_pred ec-CCCC-CCCCceEEEEEEECCeeEEEECCcCcCC
Q 040718 92 DA-NHCP-GILGCSVMLLFRGDFGCLLYTGDFRWEA 125 (403)
Q Consensus 92 ~A-~H~p-G~~~~Sv~fl~e~~~~~vlyTGD~r~~~ 125 (403)
.. .|.. +.+..|+.+.++.++.++++|||.....
T Consensus 609 ~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~~~ 644 (755)
T PRK11539 609 WPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEAQA 644 (755)
T ss_pred ecCcccCCCCCCccEEEEEEECCEEEEEEeCCChHH
Confidence 43 4431 2245589999999999999999976654
No 47
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=97.70 E-value=4.6e-05 Score=53.83 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=30.3
Q ss_pred eEEeeeccCCCCHHHHHHHHHHhCCCEEEEccCC
Q 040718 279 YIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSS 312 (403)
Q Consensus 279 ~~~~VpySdHss~~EL~~fV~~~~P~~Vi~tv~~ 312 (403)
.+..+.||.|||.+||+.|++.++|++|+++||.
T Consensus 8 ~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 8 RVEQIDFSGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp EEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred EEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 4567889999999999999999999999999984
No 48
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.39 E-value=0.00014 Score=70.01 Aligned_cols=46 Identities=28% Similarity=0.242 Sum_probs=37.1
Q ss_pred CCeEEEcCCC----------------CCccEEEEcCCchhhhCCcccc----CCCCcEEeCHhhHh
Q 040718 3 KGLISVDRWT----------------EGSQVYFLTHLHSDHTQGLSSA----WARGPLFCSRLTAK 48 (403)
Q Consensus 3 ~~~i~VD~f~----------------~~i~aifLTH~H~DHi~GL~~~----~~~~pIy~s~~T~~ 48 (403)
...|+.|+-. ..+++++|||.|.||++||..+ ....+||+++....
T Consensus 31 ~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 31 GTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred CeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 3478899863 2578999999999999999954 25679999998765
No 49
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=96.71 E-value=0.0027 Score=58.00 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=53.3
Q ss_pred cEEEEcCCchhhhCCcccc---CCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeecCCCCCcCceEEEEEe
Q 040718 16 QVYFLTHLHSDHTQGLSSA---WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAID 92 (403)
Q Consensus 16 ~aifLTH~H~DHi~GL~~~---~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt~~~ 92 (403)
.+-+-||.|+||+.|-+.+ .+.. ...+.. ..+-..+ ..++.|+.++| |++.+....
T Consensus 59 iYa~NTH~HADHiTGtg~Lkt~~pg~--------kSVis~-~SGakAD--~~l~~Gd~i~~----------G~~~le~ra 117 (237)
T KOG0814|consen 59 IYALNTHVHADHITGTGLLKTLLPGC--------KSVISS-ASGAKAD--LHLEDGDIIEI----------GGLKLEVRA 117 (237)
T ss_pred eeeecceeecccccccchHHHhcccH--------HHHhhh-ccccccc--cccCCCCEEEE----------ccEEEEEec
Confidence 4567899999999986643 2211 112211 1111111 23566777777 889998887
Q ss_pred c-CCCCCCCCceEEEEEEECCeeEEEECCcCcCC
Q 040718 93 A-NHCPGILGCSVMLLFRGDFGCLLYTGDFRWEA 125 (403)
Q Consensus 93 A-~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~ 125 (403)
+ ||++| .+-|+.. ..+.+||||.....
T Consensus 118 tPGHT~G----C~TyV~~--d~~~aFTGDalLIR 145 (237)
T KOG0814|consen 118 TPGHTNG----CVTYVEH--DLRMAFTGDALLIR 145 (237)
T ss_pred CCCCCCc----eEEEEec--CcceeeecceeEEe
Confidence 7 99999 8777653 35699999976543
No 50
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.64 E-value=0.0032 Score=57.91 Aligned_cols=98 Identities=27% Similarity=0.344 Sum_probs=58.2
Q ss_pred CCCeEEEcCCC------------CCccEEEEcCCchhhhCCcccc--CCCCcEEeCHhhHhhccccCCCCCccceEeccC
Q 040718 2 EKGLISVDRWT------------EGSQVYFLTHLHSDHTQGLSSA--WARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDI 67 (403)
Q Consensus 2 ~~~~i~VD~f~------------~~i~aifLTH~H~DHi~GL~~~--~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~ 67 (403)
++|.|+||+-+ .++.+|+||| .||+...... -+..+||++...++.+ + +..+ +.+.-
T Consensus 31 p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~~a~i~~p~~d~~~~----p-~~~D--~~l~d 101 (199)
T PF14597_consen 31 PEGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQTGAKIYGPAADAAQF----P-LACD--RWLAD 101 (199)
T ss_dssp TT--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS--EEEEEGGGCCC-----S-S--S--EEE-T
T ss_pred CCCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHhCCeeeccHHHHhhC----C-CCCc--ccccc
Confidence 57889999965 3689999996 7999976653 3578999998876433 2 2111 12222
Q ss_pred CCeEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCC
Q 040718 68 GSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEAS 126 (403)
Q Consensus 68 ~~~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~ 126 (403)
|+ ++ .+|+.|-.++-.|+|| .+.++.+. ++++|||.-....
T Consensus 102 ge--~i---------~~g~~vi~l~G~ktpG----E~ALlled---~vLi~GDl~~~~~ 142 (199)
T PF14597_consen 102 GE--EI---------VPGLWVIHLPGSKTPG----ELALLLED---RVLITGDLLRSHP 142 (199)
T ss_dssp T---BS---------STTEEEEEE-SSSSTT----EEEEEETT---TEEEESSSEEBSS
T ss_pred CC--Cc---------cCceEEEEcCCCCCCc----eeEEEecc---ceEEecceeeecC
Confidence 33 11 2788887777779999 99998875 5999999776654
No 51
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=96.12 E-value=0.029 Score=58.66 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCeEEEcCCC------------CCccEEEEcCCchhhhCCcccc----CCCCcEEeCHhhHhhcc----------ccCCC
Q 040718 3 KGLISVDRWT------------EGSQVYFLTHLHSDHTQGLSSA----WARGPLFCSRLTAKLFP----------LKFPG 56 (403)
Q Consensus 3 ~~~i~VD~f~------------~~i~aifLTH~H~DHi~GL~~~----~~~~pIy~s~~T~~lL~----------~~~~~ 56 (403)
+|+++||--. ..+|+|+||..|. .-||+.. .+.++||+++.|+++=+ .+++.
T Consensus 73 ~~rvfvesppe~~l~~t~lld~stiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~ 150 (653)
T KOG1138|consen 73 CGRVFVESPPEFTLPATHLLDASTIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPK 150 (653)
T ss_pred CCceEEcCCchhccchhhhhcccceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccc
Confidence 4677787622 2489999999885 6678765 36789999999985422 12221
Q ss_pred CCc--cce-------------EeccCCCeEEE-EeecC-------------CC-CCcCceEEEEEecCCCCCCCCceEEE
Q 040718 57 LDL--SLI-------------RVLDIGSWHSI-SVVSP-------------SS-GEKTFVEVIAIDANHCPGILGCSVML 106 (403)
Q Consensus 57 ~~~--~~i-------------~~l~~~~~~~i-~l~~~-------------~~-~~~~~v~Vt~~~A~H~pG~~~~Sv~f 106 (403)
... .|. ..+.+++|..+ .+.+- ++ ...|.+.||++-+||+.| |+-.
T Consensus 151 ~~S~~~Wk~k~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lG----SsnW 226 (653)
T KOG1138|consen 151 ASSAPLWKKKLDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLG----SSNW 226 (653)
T ss_pred cccchhhhhhhhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEecccccccc----ccce
Confidence 100 000 01122333222 11110 00 124789999999999999 9999
Q ss_pred EEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcC
Q 040718 107 LFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDN 153 (403)
Q Consensus 107 l~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~ 153 (403)
++.+.++++.|..+..+.....+ ..-...| +..|+|++-.
T Consensus 227 ~I~t~nek~sYvS~Ss~ltth~r-----~md~a~L--k~~Dvli~T~ 266 (653)
T KOG1138|consen 227 LINTPNEKLSYVSGSSFLTTHPR-----PMDQAGL--KETDVLIYTG 266 (653)
T ss_pred EEecCCcceEEEecCcccccCCc-----ccccccc--ccccEEEEec
Confidence 99999999999999887665321 1122344 7889998854
No 52
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=95.73 E-value=0.03 Score=54.03 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=47.0
Q ss_pred CceEEEEEec-CCCCC--CCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcC
Q 040718 84 TFVEVIAIDA-NHCPG--ILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDN 153 (403)
Q Consensus 84 ~~v~Vt~~~A-~H~pG--~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~ 153 (403)
|++.|.+=+. -|-+. .+|.-+|+.+..+..+++|+.|+.-.... ..++++...+.|++|++.
T Consensus 145 G~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~--------~~l~~i~e~~P~v~ii~G 209 (304)
T COG2248 145 GGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPIND--------EALEFILEKRPDVLIIGG 209 (304)
T ss_pred CCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCcc--------HHHHHHHhcCCCEEEecC
Confidence 8888888765 88542 13566788888888899999999855432 456777778999999985
No 53
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.52 E-value=0.075 Score=55.52 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=33.8
Q ss_pred CCCeEEEcCCC------------------CCccEEEEcCCchhhhCCcccc-------CCCCcEEeCHh
Q 040718 2 EKGLISVDRWT------------------EGSQVYFLTHLHSDHTQGLSSA-------WARGPLFCSRL 45 (403)
Q Consensus 2 ~~~~i~VD~f~------------------~~i~aifLTH~H~DHi~GL~~~-------~~~~pIy~s~~ 45 (403)
+.|-|+||+-. .++.+|+.||.|+||+||.... ....+|.++..
T Consensus 134 dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 134 DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchh
Confidence 45789999843 2578999999999999998643 24567888764
No 54
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=0.85 Score=45.04 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=54.9
Q ss_pred CeEEEcCCCC----------CccEEEEcCCchhhhCCccccCCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEE
Q 040718 4 GLISVDRWTE----------GSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSI 73 (403)
Q Consensus 4 ~~i~VD~f~~----------~i~aifLTH~H~DHi~GL~~~~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i 73 (403)
+.++||.+-. .++.+.+||.|.+|++++.. ++..|+... .+. ..-.+ + .-..+.-+...++
T Consensus 105 ~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~-f~~sp~l~~-s~e-~~gr~---~---~pt~l~e~~~~~l 175 (302)
T KOG4736|consen 105 DVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNL-FPQSPILYH-SME-YIGRH---V---TPTELDERPYLKL 175 (302)
T ss_pred ceEEEecCCchhhhcCcChhhcceeEEeccCccccccccc-ccCCHHHhh-hhh-hcCCc---c---ChhhhccCCcccc
Confidence 4577777643 57899999999999998875 344444211 111 00000 0 0011222223333
Q ss_pred EeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEE--CCeeEEEECCcCcCCC
Q 040718 74 SVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRG--DFGCLLYTGDFRWEAS 126 (403)
Q Consensus 74 ~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~--~~~~vlyTGD~r~~~~ 126 (403)
..++.|. --+||.+- +...++.. ..++++++||+-....
T Consensus 176 ---------~~~~~V~-~TpGht~~----~isvlv~n~~~~GTv~itGDLf~~~~ 216 (302)
T KOG4736|consen 176 ---------SPNVEVW-KTPGHTQH----DISVLVHNVDLYGTVAITGDLFPREE 216 (302)
T ss_pred ---------CCceeEe-eCCCCCCc----ceEEEEEeecccceEEEEeecccCCc
Confidence 0222221 13477765 66666655 3579999999988654
No 55
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=88.11 E-value=3.3 Score=40.33 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred CccEEEEcCCchhhhCCcccc-C--CCCcEEeCHhhH-hhccccCCCCCccceEeccCCCeEEEEeecCCCCCcCceEEE
Q 040718 14 GSQVYFLTHLHSDHTQGLSSA-W--ARGPLFCSRLTA-KLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVI 89 (403)
Q Consensus 14 ~i~aifLTH~H~DHi~GL~~~-~--~~~pIy~s~~T~-~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~~~~~~~~~v~Vt 89 (403)
.++.+++||.|.||...-... | .+.+++.-+.-. ..+. +-.......+..++..++. . ....+.|.
T Consensus 132 ~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~----~~gc~~v~el~wwe~~~~v--k----n~~~~ti~ 201 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWME----GDGSSTVTELNWGESSEFV--K----NGKTYTIW 201 (343)
T ss_pred CCceeccccccccccchHHHHhhhccCccceeehhhhhheec----CCCCCceeEeeccchhcee--c----CCcEEEEE
Confidence 467899999999999753322 1 223333322221 1111 1011122223333333221 0 01235566
Q ss_pred EEecCCCCCC--CC----ceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCCCCC----
Q 040718 90 AIDANHCPGI--LG----CSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSS---- 159 (403)
Q Consensus 90 ~~~A~H~pG~--~~----~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~~p~---- 159 (403)
+.||-|..+- +. -=.++.+-+.+.+++|.||+++.+... ..+-+.| .++|+..+-+--..|+
T Consensus 202 ~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc~~~F------~~Igerf--GpfdLAaiPiGaYePrWfmK 273 (343)
T KOG3798|consen 202 CLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYCDGEF------KKIGERF--GPFDLAAIPIGAYEPRWFMK 273 (343)
T ss_pred EcchhhhcccccccCCcceeeeeEEecCCceEEecCCCCcccHHH------HHHHHhc--CCcceeeccccccCchhhcc
Confidence 6677663320 00 012455666666999999999988531 1233455 4588888887666665
Q ss_pred CCCCCHHHHH
Q 040718 160 YAFPSREVAA 169 (403)
Q Consensus 160 ~~fp~~~~~~ 169 (403)
+.+=..+|++
T Consensus 274 ~~HInPeEav 283 (343)
T KOG3798|consen 274 SQHINPEEAV 283 (343)
T ss_pred cccCCHHHHH
Confidence 3343445544
No 56
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=61.47 E-value=7.9 Score=34.54 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHHHHhCCCEEEEcc
Q 040718 286 SDHSCFTEIEEFLNLVQPSNIRGIV 310 (403)
Q Consensus 286 SdHss~~EL~~fV~~~~P~~Vi~tv 310 (403)
+.|++++|+.++++.++|++++++|
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 169 PGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp TTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 8999999999999999999999998
No 57
>PRK00685 metal-dependent hydrolase; Provisional
Probab=47.49 E-value=43 Score=30.97 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=34.3
Q ss_pred cCCCCHHHHHHHHHHhCCCEEEEccCCCC--cccChhhHHHHHHhh
Q 040718 286 SDHSCFTEIEEFLNLVQPSNIRGIVSSSS--CYVDPLYYFGRLCRA 329 (403)
Q Consensus 286 SdHss~~EL~~fV~~~~P~~Vi~tv~~s~--~~~~~~~~f~~~~~~ 329 (403)
+.|.+.+|..++++.++|+.++|+|-... +..++ +.|...++.
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~-~~~~~~~~~ 212 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDP-EKFKALVEG 212 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCH-HHHHHHHHh
Confidence 45999999999999999999999997632 23444 667887776
No 58
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=46.68 E-value=18 Score=31.91 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=22.5
Q ss_pred EEeeeccC--CCCHHHHHHHHHHhCCCEEEEcc
Q 040718 280 IYSVPYSD--HSCFTEIEEFLNLVQPSNIRGIV 310 (403)
Q Consensus 280 ~~~VpySd--Hss~~EL~~fV~~~~P~~Vi~tv 310 (403)
+.-+|.+. ..+..|..++++.++|+.|+|+|
T Consensus 131 vl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 131 VLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 45667766 46899999999999999999997
No 59
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=33.51 E-value=41 Score=31.64 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHhCCCEEEEccCC
Q 040718 287 DHSCFTEIEEFLNLVQPSNIRGIVSS 312 (403)
Q Consensus 287 dHss~~EL~~fV~~~~P~~Vi~tv~~ 312 (403)
.|++++|+.++.+..+|++++.||-+
T Consensus 187 ~H~~~~~~~~~~~~~~~~~lil~H~~ 212 (238)
T TIGR03307 187 NHNDLTRALAINEQLRPKQVILTHIS 212 (238)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEEecc
Confidence 49999999999999999999999985
No 60
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=30.24 E-value=30 Score=26.45 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=15.1
Q ss_pred CccEEEEcCCc-hhhhCC
Q 040718 14 GSQVYFLTHLH-SDHTQG 30 (403)
Q Consensus 14 ~i~aifLTH~H-~DHi~G 30 (403)
.++.||||+.+ +|++||
T Consensus 46 kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 46 KLNDIFLTGLSSWENIGG 63 (63)
T ss_pred ccceEEECCCCcccccCC
Confidence 46899999999 999986
No 61
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=28.90 E-value=92 Score=31.82 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHhCCCEEEEccCCC--CcccChhhHHHHHHhhcC
Q 040718 287 DHSCFTEIEEFLNLVQPSNIRGIVSSS--SCYVDPLYYFGRLCRANQ 331 (403)
Q Consensus 287 dHss~~EL~~fV~~~~P~~Vi~tv~~s--~~~~~~~~~f~~~~~~~~ 331 (403)
.|.+-+|..++++.++|+.|+|+|-.. .+.++| +.|..+|.-..
T Consensus 259 ~hm~p~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp-~~~~~~~~~~~ 304 (355)
T PRK11709 259 DKMTSIDILRMAESLNAKVVIPVHHDIWSNFQADP-QEILVLWKMRK 304 (355)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEChhhccccccCH-HHHHHHHHhhh
Confidence 599999999999999999999999753 244777 55777776543
No 62
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=28.01 E-value=57 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHhCCCEEEEccCC
Q 040718 287 DHSCFTEIEEFLNLVQPSNIRGIVSS 312 (403)
Q Consensus 287 dHss~~EL~~fV~~~~P~~Vi~tv~~ 312 (403)
.|++++|..++.+..+|++++.||-+
T Consensus 197 ~H~~~~~a~~~a~~~~~k~lvltH~~ 222 (250)
T PRK11244 197 NHNDLTTALAIIEVLRPPRVILTHIS 222 (250)
T ss_pred CCCCHHHHHHHHHhcCCceEEEEccc
Confidence 59999999999999999999999975
No 63
>PRK00055 ribonuclease Z; Reviewed
Probab=26.49 E-value=68 Score=30.26 Aligned_cols=29 Identities=14% Similarity=-0.067 Sum_probs=26.6
Q ss_pred ccCCCCHHHHHHHHHHhCCCEEEEccCCC
Q 040718 285 YSDHSCFTEIEEFLNLVQPSNIRGIVSSS 313 (403)
Q Consensus 285 ySdHss~~EL~~fV~~~~P~~Vi~tv~~s 313 (403)
.+.|++.+|..+..+.++|++++.+|-+.
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~ 235 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSP 235 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeecc
Confidence 46799999999999999999999999864
No 64
>PRK02113 putative hydrolase; Provisional
Probab=22.08 E-value=95 Score=29.31 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=25.7
Q ss_pred ccCCCCHHHHHHHHHHhCCCEEEEccCC
Q 040718 285 YSDHSCFTEIEEFLNLVQPSNIRGIVSS 312 (403)
Q Consensus 285 ySdHss~~EL~~fV~~~~P~~Vi~tv~~ 312 (403)
...|++++|..++.+..+|++++.||-+
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H~s 224 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIHMS 224 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEccc
Confidence 4569999999999999999999999975
Done!