BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040719
(205 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553225|ref|XP_002517655.1| conserved hypothetical protein [Ricinus communis]
gi|223543287|gb|EEF44819.1| conserved hypothetical protein [Ricinus communis]
Length = 274
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 128/196 (65%), Gaps = 14/196 (7%)
Query: 1 MVRFLTERRC-VAPLTLD-DVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDV 58
+++ + ERRC ++PL+L D DD + G VR YLKLPQ ++L+VLKLDGS FDV
Sbjct: 29 ILKVIIERRCGLSPLSLKVDEDDAVNGNGGLVVRRYSYLKLPQQLLKLTVLKLDGSSFDV 88
Query: 59 YIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118
I RNATV EL+QA+EE+F+ SP EG KISW+ VWGHFCL Y+ +KL+NDK IR+F +
Sbjct: 89 NIGRNATVAELKQAVEEIFSSSPEEGHDKISWSLVWGHFCLSYENQKLINDKVCIRNFGI 148
Query: 119 KDGDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQAVLAKDNLEDQHKRL 178
KDGD+LQF RHMS++Y +S R+S +QN + S ++ N+E + K
Sbjct: 149 KDGDQLQFIRHMSINYSNS-RQSTSQNAVRKSLGPPSKDA-----------NVEKEQKTT 196
Query: 179 SPGSDADEEKKHDLAD 194
+ +E + ++L D
Sbjct: 197 EDHTSMNENQDYNLYD 212
>gi|15220048|ref|NP_178123.1| ubiquitin-like domain-containing protein kinase [Arabidopsis
thaliana]
gi|54261721|gb|AAV31164.1| At1g80060 [Arabidopsis thaliana]
gi|58331795|gb|AAW70395.1| At1g80060 [Arabidopsis thaliana]
gi|332198231|gb|AEE36352.1| ubiquitin-like domain-containing protein kinase [Arabidopsis
thaliana]
Length = 243
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 119/184 (64%), Gaps = 12/184 (6%)
Query: 2 VRFLTERRCVAPLTLDDVDDVGDCYEGNSVRTMPYLKLP-QPRIRLSVLKLDGSRFDVYI 60
+R L + R ++ L+D + S R YLKLP Q RI+LSV+KL+GS FDV +
Sbjct: 17 LRSLIDPRFLSSFALNDGGSI-------SGRRSSYLKLPPQGRIKLSVVKLNGSLFDVEV 69
Query: 61 ERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
++ +V EL++A+E+VFT+SP EG G ISW++VWGHFCLCY ++LVNDKT IR + D
Sbjct: 70 AKDCSVAELKRAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLND 129
Query: 121 GDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQAV--LAKDNLEDQHKRL 178
GD+L F RH+S+D+ +RSK+ +C+++ L V S E + ++ ++D ++
Sbjct: 130 GDQLHFVRHLSIDHSPMNKRSKSP--SCKRYLELDVSSIVNEIQIQNQNQNGVDDVAEKC 187
Query: 179 SPGS 182
PG+
Sbjct: 188 YPGA 191
>gi|297839931|ref|XP_002887847.1| hypothetical protein ARALYDRAFT_895992 [Arabidopsis lyrata subsp.
lyrata]
gi|297333688|gb|EFH64106.1| hypothetical protein ARALYDRAFT_895992 [Arabidopsis lyrata subsp.
lyrata]
Length = 243
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 109/162 (67%), Gaps = 10/162 (6%)
Query: 2 VRFLTERRCVAPLTLDDVDDVGDCYEGNSVRTMPYLKLP-QPRIRLSVLKLDGSRFDVYI 60
+R L E R ++ L+D + S R YLKLP Q RI+LSV+KL+GS FDV +
Sbjct: 17 LRSLIEPRFLSSFALNDGGSI-------SGRRSSYLKLPPQGRIKLSVVKLNGSLFDVEV 69
Query: 61 ERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
++ +V EL++A+E+VFT+SP E G ISW++VWGHFCL Y ++LVNDKT IR + D
Sbjct: 70 AKDCSVAELKRAVEQVFTISPLEAHGMISWSHVWGHFCLSYRDQRLVNDKTSIRYLALSD 129
Query: 121 GDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCE 162
GD+L+F RH+S+D+ +RSK+ +C+++ L VES+ E
Sbjct: 130 GDQLRFVRHLSIDHSPMNKRSKSP--SCKRYLELEVESNVNE 169
>gi|297743473|emb|CBI36340.3| unnamed protein product [Vitis vinifera]
Length = 630
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 89/117 (76%)
Query: 34 MPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNV 93
+ Y KL +LS+LKLDG+ FDV + RNA V EL+QAIEEVF+LS E + ISW++V
Sbjct: 39 LSYRKLSLDLYKLSILKLDGTSFDVQVARNAKVAELKQAIEEVFSLSTNEDEENISWSHV 98
Query: 94 WGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQQ 150
WGHFCLCY+G+KLVNDK HIRD ++DGD+LQF +H++ D K++ K ++VAC+Q
Sbjct: 99 WGHFCLCYEGQKLVNDKAHIRDVGIQDGDQLQFIQHITTDRNSKKKQPKKESVACRQ 155
>gi|225442930|ref|XP_002265295.1| PREDICTED: uncharacterized protein LOC100262712 [Vitis vinifera]
Length = 232
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 89/118 (75%)
Query: 33 TMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTN 92
+ Y KL +LS+LKLDG+ FDV + RNA V EL+QAIEEVF+LS E + ISW++
Sbjct: 38 NLSYRKLSLDLYKLSILKLDGTSFDVQVARNAKVAELKQAIEEVFSLSTNEDEENISWSH 97
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQQ 150
VWGHFCLCY+G+KLVNDK HIRD ++DGD+LQF +H++ D K++ K ++VAC+Q
Sbjct: 98 VWGHFCLCYEGQKLVNDKAHIRDVGIQDGDQLQFIQHITTDRNSKKKQPKKESVACRQ 155
>gi|449469242|ref|XP_004152330.1| PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus]
Length = 243
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 102/164 (62%), Gaps = 8/164 (4%)
Query: 1 MVRFLTERRCVAPLTLDDVDDVGDCYEGNSVRTMPYLKLP-QPRIRLSVLKLDGSRFDVY 59
RF+ + RC AP TLD D +++ PY LP Q I L VLKLDGS F +
Sbjct: 19 FTRFI-DYRCFAPPTLDFDPD------SDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIR 71
Query: 60 IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119
+ RN+TV +L++AIE+VF KI+W+ +WGHFCLCY+G KL++DKT I+ + +K
Sbjct: 72 VSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIK 131
Query: 120 DGDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQ 163
DGD+LQF RHMS++ L K+ K Q V C+ LS ES E+
Sbjct: 132 DGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEE 175
>gi|388501394|gb|AFK38763.1| unknown [Medicago truncatula]
Length = 226
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Query: 30 SVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKIS 89
S +++ Y KLP +RLSVLKLDG+ FDV++ +NAT+ EL+ A+E VF+ P G KIS
Sbjct: 34 STKSLLYDKLPSEPLRLSVLKLDGTSFDVHVSKNATIAELKDAVEGVFSYMPQHGPAKIS 93
Query: 90 WTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQ 149
W +VWG FCLCYDG+KLV +K +++++ +KD D+L F RH S + ++RSK + +
Sbjct: 94 WPHVWGQFCLCYDGQKLVTEKDYLKNYGVKDSDQLHFIRHASNNCGARRKRSKKRVFHLK 153
Query: 150 QFSRLSVESDTCEQ 163
Q RLS +++ C+Q
Sbjct: 154 QHRRLS-QANYCKQ 166
>gi|449520183|ref|XP_004167113.1| PREDICTED: uncharacterized LOC101219460 [Cucumis sativus]
Length = 277
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 91/136 (66%)
Query: 28 GNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK 87
G S + + Y +LP + LSVLKLDGS FD+ + R+ATV EL+ A+E VF+ P G GK
Sbjct: 41 GLSRKNVLYRQLPHQPLMLSVLKLDGSSFDIQVRRSATVAELKGAVELVFSHMPQHGPGK 100
Query: 88 ISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVA 147
ISW +VW HFCLCY G+KLV+D +I F +KDGD+LQF RH++ Y +++SK V+
Sbjct: 101 ISWLHVWWHFCLCYAGQKLVDDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKLVVS 160
Query: 148 CQQFSRLSVESDTCEQ 163
+ SR+S S +Q
Sbjct: 161 SKLISRISSRSKNFKQ 176
>gi|357437001|ref|XP_003588776.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355477824|gb|AES59027.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 266
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Query: 30 SVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKIS 89
S +++ Y KLP +RLSVLKLDG+ FDV++ +NAT+ EL+ A+E VF+ P G KIS
Sbjct: 34 STKSLLYDKLPSEPLRLSVLKLDGTSFDVHVSKNATIAELKDAVEGVFSYMPQHGPAKIS 93
Query: 90 WTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQ 149
W +VWG FCLCYDG+KLV +K +++++ +KD D+L F RH S + ++RSK + +
Sbjct: 94 WPHVWGQFCLCYDGQKLVTEKDYLKNYGVKDSDQLHFIRHASNNCGARRKRSKKRVFHLK 153
Query: 150 QFSRLSVESDTCEQ 163
Q RLS +++ C+Q
Sbjct: 154 QHRRLS-QANYCKQ 166
>gi|15239396|ref|NP_197916.1| ubiquitin-like domain-containing protein-like protein [Arabidopsis
thaliana]
gi|26451503|dbj|BAC42849.1| unknown protein [Arabidopsis thaliana]
gi|28973251|gb|AAO63950.1| unknown protein [Arabidopsis thaliana]
gi|332006045|gb|AED93428.1| ubiquitin-like domain-containing protein-like protein [Arabidopsis
thaliana]
Length = 208
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
RT Y KLP IRLSVLKLDGS FDVY+ +ATVG+L+ AIE F+ P +G KISW+
Sbjct: 7 RTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWS 66
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK---RRSKTQNV 146
+VWGHFCLC+ G+KL+ D I ++ MKDGDE++F H+S + + SK R+SK +N+
Sbjct: 67 HVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKNL 124
>gi|296082049|emb|CBI21054.3| unnamed protein product [Vitis vinifera]
Length = 251
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)
Query: 28 GNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK 87
G S + Y KLPQ I+LSVLKLDGS F + + + +TV EL+QA+E+ F+ P +G GK
Sbjct: 29 GLSRKASFYWKLPQQPIKLSVLKLDGSCFQIEVTKTSTVAELKQAVEDAFSHLPKKGPGK 88
Query: 88 ISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ--FSRHMSLDYLHSKRRSKTQN 145
ISW +VWGHFCLCY+ +KLV + +I+++ +KDGD++Q F RH S++Y KRR K +
Sbjct: 89 ISWLHVWGHFCLCYNDQKLVTETEYIKNYGIKDGDQVQLHFVRHQSINYNLRKRRQKRRC 148
Query: 146 VACQQFSRLSVESDTCEQAVLAKDNLEDQHKRL 178
A Q R+S + E DN E+Q K +
Sbjct: 149 GALTQ-PRISDGCEEKESNGEEDDNQENQKKEI 180
>gi|297808549|ref|XP_002872158.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297317995|gb|EFH48417.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 208
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
RT Y KLP IRLSVLKLDGS FDVY+ +ATVG+L+ AIE F+ P +G KISW+
Sbjct: 7 RTFSYDKLPTEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWS 66
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK---RRSKTQNV 146
+VWGHFCLC+ G+KL+ D I + +KDGDE++F H+S + + SK R+SK +N+
Sbjct: 67 HVWGHFCLCFGGQKLITDTDCIGSYGLKDGDEVRFKNHVSGNAVLSKGYSRKSKQKNL 124
>gi|21554720|gb|AAM63670.1| unknown [Arabidopsis thaliana]
Length = 208
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
RT Y KLP IRLSVLKLDGS FDVY+ +ATVG+L+ AIE F+ P +G KISW+
Sbjct: 7 RTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWS 66
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK---RRSKTQNV 146
+VWGHFCLC+ G+KL+ D I ++ MKDGDE++F H+S + SK R+SK +N+
Sbjct: 67 HVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAELSKGYSRKSKRKNL 124
>gi|449437400|ref|XP_004136480.1| PREDICTED: uncharacterized protein LOC101219460 [Cucumis sativus]
Length = 277
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 84/122 (68%)
Query: 28 GNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK 87
G S + + Y +LP + LSVLKLDGS FD+ + R+ATV EL+ A+E VF+ P G GK
Sbjct: 41 GLSRKNVLYRQLPHQPLMLSVLKLDGSSFDIQVRRSATVAELKGAVELVFSHMPQHGPGK 100
Query: 88 ISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVA 147
ISW +VW HFCLCY G+KLV+D +I F +KDGD+LQF RH++ Y +++SK V+
Sbjct: 101 ISWLHVWWHFCLCYAGQKLVDDADYIASFGIKDGDQLQFVRHVTTGYNVIRKQSKKLVVS 160
Query: 148 CQ 149
+
Sbjct: 161 SK 162
>gi|255548890|ref|XP_002515501.1| hypothetical protein RCOM_0923760 [Ricinus communis]
gi|223545445|gb|EEF46950.1| hypothetical protein RCOM_0923760 [Ricinus communis]
Length = 571
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 106/198 (53%), Gaps = 35/198 (17%)
Query: 8 RRCVAPLTLDDVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVG 67
R PL+ + D G + +M LP+ ++LS+LKLDGS FDV + ++ATV
Sbjct: 24 RSSSLPLSPFTIVDGGYSRRSSVSYSM----LPEEPLKLSILKLDGSCFDVEVMKSATVA 79
Query: 68 ELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFS 127
ELRQAIE VF+ P +G GKISW +VW HFCL ++G+KLV + +I + ++DGD+LQF
Sbjct: 80 ELRQAIEAVFSHMPRKGPGKISWPHVWSHFCLMFEGQKLVRETDYIGYYGIRDGDQLQFI 139
Query: 128 RHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQAVLAKDNLEDQHKRLSPGSDADEE 187
RH+S Y K+RS + + + +QH+ EE
Sbjct: 140 RHISTSYSIRKKRS------------------------MKRISASEQHRNSLSSPYIYEE 175
Query: 188 KKHDLADRDSLGNQDDSY 205
K+HD G +DDSY
Sbjct: 176 KEHD-------GTEDDSY 186
>gi|357138938|ref|XP_003571043.1| PREDICTED: uncharacterized protein LOC100841643 [Brachypodium
distachyon]
Length = 320
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 18 DVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF 77
D D +G G + + Y +LP+PR+RL++ KLD S FDV I R+A V EL+ AIE VF
Sbjct: 81 DADCIGALACGPA--SFSYHRLPEPRLRLTIRKLDDSYFDVQIARSAAVWELKAAIEAVF 138
Query: 78 TLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHS 137
+ I+W +VW HFCLC+ KL +D+ +R F +KDGDEL FS+H+S+DY
Sbjct: 139 IALFYDMDNAITWQHVWSHFCLCFKDEKLTDDRATLRAFGIKDGDELHFSQHLSVDYSPC 198
Query: 138 KRRSKTQNVACQQFSRLSVESDTCEQAVLAKDNLED 173
K RSK+Q A + SR SV+ L D +E+
Sbjct: 199 K-RSKSQRSASHRRSRTSVDDFGVRSRTLLDDLIEE 233
>gi|388519459|gb|AFK47791.1| unknown [Lotus japonicus]
Length = 269
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 74/100 (74%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
++ Y KLP RLSVLKLDGS FD+ + + A++ EL+ A+E VF+ P +G KISW
Sbjct: 36 KSFLYGKLPSQPFRLSVLKLDGSSFDIQVSKTASIAELKDAVEAVFSHMPEKGPAKISWP 95
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131
+VWG FCLCYDG+KLV ++ ++R++ +KDGDEL F RH+S
Sbjct: 96 HVWGQFCLCYDGQKLVTEEDYLRNYGIKDGDELHFMRHVS 135
>gi|224089270|ref|XP_002308669.1| predicted protein [Populus trichocarpa]
gi|222854645|gb|EEE92192.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 80/109 (73%), Gaps = 2/109 (1%)
Query: 28 GNSVRTM--PYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQ 85
GN + + Y KLP+ +RLSVLKLD S F++ + ++ATV ELRQA+E F+ P EG
Sbjct: 61 GNVTKALFYSYNKLPEEPLRLSVLKLDASSFEIEVMKSATVEELRQAVEAAFSYMPQEGP 120
Query: 86 GKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDY 134
GKISW ++WGHFCLCY +KL+ + +I+++ +KDGD+LQF RH+S +Y
Sbjct: 121 GKISWPHLWGHFCLCYGDQKLLMETDYIKNYGIKDGDQLQFIRHVSGNY 169
>gi|356563874|ref|XP_003550182.1| PREDICTED: uncharacterized protein LOC100820296 [Glycine max]
Length = 275
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 84/120 (70%)
Query: 36 YLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWG 95
Y +LP +RL+VLKLDGS F + + + ATV EL+ A+E VF+ P +G KISW +VWG
Sbjct: 44 YDRLPSQPLRLTVLKLDGSCFHIQVSKTATVAELKDAVEAVFSHVPHKGPAKISWAHVWG 103
Query: 96 HFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLS 155
FCLCYDG+KLV +K ++R++ +KDGD+L+F RH++ + ++R K + V +Q R S
Sbjct: 104 QFCLCYDGQKLVTEKDNLRNYGIKDGDQLRFIRHVTNNCCVQRKRLKKRVVYLKQHRRSS 163
>gi|145351239|ref|NP_194954.2| ubiquitin-like family protein [Arabidopsis thaliana]
gi|26450559|dbj|BAC42392.1| unknown protein [Arabidopsis thaliana]
gi|332660628|gb|AEE86028.1| ubiquitin-like family protein [Arabidopsis thaliana]
Length = 239
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
R+ Y ++P+ I+L+VLKLDGS F + + + ATVGEL+ A+E F+ P G GKISW
Sbjct: 26 RSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGKISWP 85
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDY--LHSKRRSKTQNVACQ 149
+VWG FCL Y+ ++L+N+ ++ +F +KDGD+L+F RH+S +Y L K +SKT V+
Sbjct: 86 HVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS-NYCMLMVKHKSKTPRVSS- 143
Query: 150 QFSRLSVESDTCE 162
F +L + S T E
Sbjct: 144 -FKQLKLFSTTPE 155
>gi|388521043|gb|AFK48583.1| unknown [Lotus japonicus]
Length = 220
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 73/100 (73%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
++ Y KLP RLSVLKLDGS FD+ + + A++ EL+ A+E VF+ P +G KISW
Sbjct: 36 KSFLYGKLPSQPFRLSVLKLDGSSFDIQVSKTASIAELKDAVEAVFSHMPEKGPAKISWP 95
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131
+VWG FCLCYDG+KLV ++ ++R++ +KDGDEL F H+S
Sbjct: 96 HVWGQFCLCYDGQKLVTEEDYLRNYGIKDGDELHFMCHVS 135
>gi|297798732|ref|XP_002867250.1| hypothetical protein ARALYDRAFT_491506 [Arabidopsis lyrata subsp.
lyrata]
gi|297313086|gb|EFH43509.1| hypothetical protein ARALYDRAFT_491506 [Arabidopsis lyrata subsp.
lyrata]
Length = 237
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWT 91
R+ Y ++P+ I+L+VLKLDGS F + + + ATVGEL+ A+E F+ P G GKISW
Sbjct: 25 RSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGKISWP 84
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDY--LHSKRRSKTQNVACQ 149
+VWG FCL Y+ ++L+N+ ++ +F +KDGD+L+F RH+S +Y L K +SKT V+
Sbjct: 85 HVWGQFCLSYEDKRLINESEYLLEFGIKDGDQLRFIRHIS-NYCMLMVKHKSKTPRVSS- 142
Query: 150 QFSRLSVESDTCE 162
F +L + S T E
Sbjct: 143 -FKQLKLFSTTPE 154
>gi|326500444|dbj|BAK06311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 14 LTLDDV-------DDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATV 66
L LDD+ D +G G + + Y +LP+P +RL+V KLD S FDV I R+A V
Sbjct: 53 LDLDDIAARAAKADCIGALACGRA--SFSYHRLPEPPLRLTVRKLDDSYFDVRIARSAAV 110
Query: 67 GELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQF 126
EL+ AI+ VF + + ++W +VW HFCLC+ K+++DK +R F +KDGDEL F
Sbjct: 111 WELKAAIQGVFVALYHDMENAVTWQHVWSHFCLCFKDEKMMDDKATLRAFGIKDGDELHF 170
Query: 127 SRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQAVLAKDNLED 173
++H+S+DY K S++Q + SR SVE + L D +E+
Sbjct: 171 AQHLSVDYSPCK-SSRSQRATSHRRSRTSVEYSSVRPRSLMDDLIEE 216
>gi|255572471|ref|XP_002527170.1| conserved hypothetical protein [Ricinus communis]
gi|223533435|gb|EEF35183.1| conserved hypothetical protein [Ricinus communis]
Length = 114
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
Query: 33 TMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPT-EGQGKISWT 91
+ Y +LPQ + RLSVLKL+GS F+V + R ATVGEL+QA+E VFT SP + ISW
Sbjct: 12 SFAYERLPQEQFRLSVLKLNGSFFEVQVSRMATVGELKQAVENVFTHSPEDDMHMNISWW 71
Query: 92 NVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123
+VW HFCLCY G+KL++DK +I+ F +KDGD+
Sbjct: 72 HVWSHFCLCYKGQKLIHDKAYIQSFGIKDGDQ 103
>gi|356518246|ref|XP_003527790.1| PREDICTED: uncharacterized protein LOC100790105 [Glycine max]
Length = 258
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 84/134 (62%)
Query: 30 SVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKIS 89
S+ + Y +LP + LS+LKLD S F V + ATV EL+QA+E VF+ P +G GKI
Sbjct: 26 SLSSFSYDRLPSQTLILSILKLDASSFHVEVANAATVAELKQAVEAVFSHVPQKGPGKIL 85
Query: 90 WTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQ 149
W VW FCLCY G+KLV++ +IRD+ +KDGD+L F H+S +++SK + V +
Sbjct: 86 WPLVWRQFCLCYQGQKLVSEMDYIRDYGIKDGDQLHFVYHVSDTCSFERKQSKKRVVNLK 145
Query: 150 QFSRLSVESDTCEQ 163
Q R S + + +Q
Sbjct: 146 QHMRSSSKVNRYQQ 159
>gi|242064292|ref|XP_002453435.1| hypothetical protein SORBIDRAFT_04g006000 [Sorghum bicolor]
gi|241933266|gb|EES06411.1| hypothetical protein SORBIDRAFT_04g006000 [Sorghum bicolor]
Length = 274
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%)
Query: 33 TMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTN 92
+ Y +LP+PR+RL+V KLD S FD+ I R+ATV EL+ AIE +F+ + Q ISW +
Sbjct: 48 SFSYRRLPEPRLRLTVQKLDDSFFDIEIARSATVWELKVAIENLFSDLYDDAQKTISWNH 107
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQQFS 152
VW HFCLC+ ++ +DK +R F ++DGD L F++H+S+DY + K Q
Sbjct: 108 VWSHFCLCFKDERMTDDKATLRGFGIRDGDVLHFAQHLSVDYSPCRSLPKYQKEPSHTHR 167
Query: 153 RLSVESDTCEQAVLAKDNLEDQHKRLS 179
R D L D ED+ ++ +
Sbjct: 168 RSRTSLDGYRLVSLLDDLSEDEGEKFT 194
>gi|145334195|ref|NP_001078478.1| ubiquitin-like family protein [Arabidopsis thaliana]
gi|332660629|gb|AEE86029.1| ubiquitin-like family protein [Arabidopsis thaliana]
Length = 204
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 85/126 (67%), Gaps = 8/126 (6%)
Query: 39 LPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFC 98
+P+ I+L+VLKLDGS F + + ATVGEL+ A+E F+ P G GKISW +VWG FC
Sbjct: 1 MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFC 57
Query: 99 LCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDY--LHSKRRSKTQNVACQQFSRLSV 156
L Y+ ++L+N+ ++ +F +KDGD+L+F RH+S +Y L K +SKT V+ F +L +
Sbjct: 58 LSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS-NYCMLMVKHKSKTPRVS--SFKQLKL 114
Query: 157 ESDTCE 162
S T E
Sbjct: 115 FSTTPE 120
>gi|259490128|ref|NP_001159154.1| hypothetical protein [Zea mays]
gi|223942319|gb|ACN25243.1| unknown [Zea mays]
gi|413935984|gb|AFW70535.1| hypothetical protein ZEAMMB73_861622 [Zea mays]
Length = 266
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 19 VDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT 78
D +G G S + Y +LP+PR+RL+V KLD S FD+ I R+ATV EL+ IE +F+
Sbjct: 33 TDCIGALACGRS--SFSYRRLPEPRLRLTVQKLDDSFFDIEIARSATVWELKVTIENLFS 90
Query: 79 LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK 138
+ Q ISW +VW HFCLC+ +L +DK +R F ++DGD L F++H+S+DY +
Sbjct: 91 ALYDDTQKTISWNHVWSHFCLCFKDERLTDDKATLRGFGIRDGDVLHFAQHLSVDYSPCR 150
Query: 139 RRSKTQNVACQQFSR 153
K Q A R
Sbjct: 151 DPPKNQKEASHTHRR 165
>gi|147846512|emb|CAN81657.1| hypothetical protein VITISV_042595 [Vitis vinifera]
Length = 283
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 71/107 (66%), Gaps = 11/107 (10%)
Query: 28 GNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK 87
G S + Y KLPQ I+LSVLKLDGS F + + + +TV EL+QA+E+ F+ P +G GK
Sbjct: 29 GLSRKASFYWKLPQQPIKLSVLKLDGSCFQIEVTKTSTVAELKQAVEDAFSHLPKKGPGK 88
Query: 88 ISW-----------TNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123
ISW +VWGHFCLCY+ +KLV + +I+++ +KDGD+
Sbjct: 89 ISWYFHCRYSHILGLHVWGHFCLCYNDQKLVTETEYIKNYGIKDGDQ 135
>gi|356509914|ref|XP_003523687.1| PREDICTED: uncharacterized protein LOC100781177 [Glycine max]
Length = 259
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 75/125 (60%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRK 105
LS+LKLD S F V + ATV EL+QA+E VF P +G GKI W VW FCL Y G+K
Sbjct: 39 LSILKLDASSFHVEVANAATVAELKQAVEAVFCRVPQKGPGKILWPLVWRQFCLSYQGQK 98
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQAV 165
LV++ +IRDF ++DGD+L F H+S ++SK Q V +Q R S + + +Q
Sbjct: 99 LVSESDYIRDFGIEDGDQLHFVHHVSDTCSFEGKQSKKQAVNLKQHRRSSSKVNRYQQKE 158
Query: 166 LAKDN 170
DN
Sbjct: 159 HNDDN 163
>gi|449527599|ref|XP_004170797.1| PREDICTED: uncharacterized LOC101206096 [Cucumis sativus]
Length = 230
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 1 MVRFLTERRCVAPLTLDDVDDVGDCYEGNSVRTMPYLKLP-QPRIRLSVLKLDGSRFDVY 59
RF+ + RC AP TLD D +++ PY LP Q I L VLKLDGS F +
Sbjct: 19 FTRFI-DYRCFAPPTLDFDPD------SDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIR 71
Query: 60 IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119
+ RN+TV +L++AIE+VF + G ++ T + G KL++DKT I+ + +K
Sbjct: 72 VSRNSTVADLKRAIEKVF-----DSPGGVNTTRLHGE--------KLIDDKTCIKGYGIK 118
Query: 120 DGDELQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTCEQ 163
DGD+LQF RHMS++ L K+ K Q V C+ S ES E+
Sbjct: 119 DGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEE 162
>gi|218190221|gb|EEC72648.1| hypothetical protein OsI_06171 [Oryza sativa Indica Group]
Length = 360
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
Query: 47 SVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK-ISWTNVWGHFCLCYDGRK 105
+V KLD S FDV I R+A V EL+ AIE+VF E K ISW +VW HFCLC+ K
Sbjct: 51 TVRKLDDSYFDVQIARSAAVWELKAAIEDVFAALYDETDNKAISWQHVWSHFCLCFKDEK 110
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK----RRSKT 143
L +DK +R F ++DGDEL F++H+S++Y K RRS+T
Sbjct: 111 LTDDKATLRAFGIRDGDELHFAQHLSVEYRPCKSLSLRRSRT 152
>gi|222622336|gb|EEE56468.1| hypothetical protein OsJ_05682 [Oryza sativa Japonica Group]
Length = 370
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 47 SVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK-ISWTNVWGHFCLCYDGRK 105
+V KLD S FDV I R+A V EL+ AIE+VF E K ISW +VW HFCLC+ K
Sbjct: 51 TVRKLDDSYFDVQIARSAAVWELKAAIEDVFAALYDETDNKAISWQHVWSHFCLCFKDEK 110
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK----RRSKTQ 144
L +DK +R F ++DGDE+ F++H+S++Y K RRS+T
Sbjct: 111 LTDDKATLRAFGIRDGDEVHFAQHLSVEYRPCKSLSLRRSRTS 153
>gi|115444711|ref|NP_001046135.1| Os02g0188500 [Oryza sativa Japonica Group]
gi|46389904|dbj|BAD15525.1| unknown protein [Oryza sativa Japonica Group]
gi|113535666|dbj|BAF08049.1| Os02g0188500 [Oryza sativa Japonica Group]
gi|215678897|dbj|BAG95334.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 324
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 47 SVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK-ISWTNVWGHFCLCYDGRK 105
+V KLD S FDV I R+A V EL+ AIE+VF E K ISW +VW HFCLC+ K
Sbjct: 117 TVRKLDDSYFDVQIARSAAVWELKAAIEDVFAALYDETDNKAISWQHVWSHFCLCFKDEK 176
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK----RRSKTQ 144
L +DK +R F ++DGDE+ F++H+S++Y K RRS+T
Sbjct: 177 LTDDKATLRAFGIRDGDEVHFAQHLSVEYRPCKSLSLRRSRTS 219
>gi|116779533|gb|ABK21326.1| unknown [Picea sitchensis]
Length = 186
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG 103
IRL + ++D + FDV + A+V EL++AIE+ F S E +GKISW +VWG+FCL Y+
Sbjct: 29 IRLCIFRMDNTSFDVSVPGTASVLELKKAIEDKFGNSQME-EGKISWCHVWGNFCLTYED 87
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHMS 131
R+LVND + + F +KD DEL F RHMS
Sbjct: 88 RELVNDGSLLSSFGIKDSDELFFVRHMS 115
>gi|116784054|gb|ABK23196.1| unknown [Picea sitchensis]
Length = 186
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG 103
IRL + ++D + FDV + A+V EL++AIE+ F S E +GKISW +VWG+FCL Y+
Sbjct: 29 IRLCIFRMDNTSFDVSVPGTASVLELKKAIEDKFGNSQME-EGKISWCHVWGNFCLTYED 87
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHMS 131
R+LVND + + F +KD DEL F RHMS
Sbjct: 88 RELVNDGSLLSSFGIKDSDELFFVRHMS 115
>gi|357466173|ref|XP_003603371.1| hypothetical protein MTR_3g106830 [Medicago truncatula]
gi|355492419|gb|AES73622.1| hypothetical protein MTR_3g106830 [Medicago truncatula]
Length = 302
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 43/167 (25%)
Query: 33 TMPYLKLPQPRIRLSVLKLDGSRF---------------------------------DVY 59
T+PY KLP + L+VLKLD S F +V
Sbjct: 29 TLPYDKLPSQNLTLTVLKLDSSSFRNLPLLADFSSNSYSVLLHFFDLEFICKILIVSEVE 88
Query: 60 IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119
+ + ATV L+QA+E F P KISW VWG FCLCY+G+KLV + ++RD+ +K
Sbjct: 89 VAKTATVAVLKQAVEAAFRHKPE----KISWPLVWGQFCLCYEGQKLVTETDYLRDYGIK 144
Query: 120 DGDE-----LQFSRHMSLDYLHSKRRSKTQNVACQQFSRLSVESDTC 161
DGD+ L+F RH+S + + +R+ K + V +Q R + + C
Sbjct: 145 DGDQVRDYSLRFIRHVS-NVCNFQRKPKKRTVNLKQHGRSLSQVNRC 190
>gi|168033033|ref|XP_001769021.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679655|gb|EDQ66099.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 175
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 6/103 (5%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAI-EEVFTLSPTE-GQGKISWTNVWGHFCLCY 101
++LS+LKLDGS FDV + N+ V +L+QA+ + V L +E G +ISW +VWGHFCLC+
Sbjct: 52 MKLSILKLDGSHFDVVVLTNSRVRDLKQAVVKYVDHLEQSELGHKRISWQHVWGHFCLCH 111
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHMSL----DYLHSKRR 140
KLV+D + F +++ D+L+F H+SL YL +K+R
Sbjct: 112 GTEKLVDDDARLAGFGIRNNDQLRFEHHVSLRDEGQYLRAKKR 154
>gi|167999003|ref|XP_001752207.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696602|gb|EDQ82940.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEV--FTLSPTEGQGKISWTNVWGHFCLCY 101
++LS+LKLDGS +V + NA V +L+QA+ + F GQ ISW++VW HFCL Y
Sbjct: 51 MKLSILKLDGSHLEVAVLNNAKVRDLKQAVMKYVDFQEQSHLGQRHISWSHVWDHFCLSY 110
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131
KL++D + DF ++ DEL+F H++
Sbjct: 111 GKEKLLDDDARLHDFGIRKNDELRFEHHVA 140
>gi|168056786|ref|XP_001780399.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668159|gb|EDQ54772.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE---GQGKISWTNVWGHFCLC 100
IRLS+LKLDG F+V + N V +L+Q+I ++ S + G ISW +VW +FCL
Sbjct: 55 IRLSILKLDGIHFEVTVPNNGKVRDLKQSIM-MYVDSDEQSQLGHRHISWKHVWNNFCLS 113
Query: 101 YDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131
+ KLV+D + DF +++ DEL+F H++
Sbjct: 114 FGKEKLVDDDARLHDFGIRNNDELRFEHHVA 144
>gi|307136304|gb|ADN34128.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 181
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 73/116 (62%), Gaps = 9/116 (7%)
Query: 31 VRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE----GQG 86
V T+ L+L +R+SVLKLDG+ DV I +AT+ +L+ AI++ ++ TE G
Sbjct: 57 VDTLISLELGSA-MRISVLKLDGTAIDVLIMNSATLKDLKLAIKQ--KVNETEQSKMGHR 113
Query: 87 KISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRH-MSLDY-LHSKRR 140
ISW +VW +FCL + K+++D + ++DF +++ +++F + MS + HS+RR
Sbjct: 114 HISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRR 169
>gi|224065725|ref|XP_002301940.1| predicted protein [Populus trichocarpa]
gi|222843666|gb|EEE81213.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 15 TLDDVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIE 74
TL DVD + G++ +R+SV KLDG+ FDV + +ATV +L+ AI+
Sbjct: 45 TLSDVDTLISLEMGSA-------------MRISVQKLDGTSFDVALMNSATVKDLKLAIK 91
Query: 75 -EVFTLSPTE-GQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRH-MS 131
++ + ++ G ISW VW +F L Y +KL++D + ++D +++ ++ F+ + MS
Sbjct: 92 RKLIEMEQSKMGHRHISWKKVWANFALSYHNQKLLDDNSALQDSGIRNNSQVHFASYVMS 151
Query: 132 LDYL-HSKRR 140
D HSKRR
Sbjct: 152 KDSQRHSKRR 161
>gi|225459779|ref|XP_002285907.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Vitis vinifera]
gi|302141700|emb|CBI18903.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 15 TLDDVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIE 74
TL DVD + + G++ +R+SV+KLD + FDV + +ATV +L+ AI+
Sbjct: 48 TLSDVDTLINLELGSA-------------MRISVIKLDSTSFDVAVLNSATVKDLKLAIK 94
Query: 75 EVFT--LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQF 126
+ G ISW +VW +FCL Y KL+ND + ++DF + + ++ F
Sbjct: 95 KKINDMEQSKMGHRHISWKHVWANFCLSYYNDKLINDGSALQDFGIHNNSQVHF 148
>gi|284444059|gb|ADB85768.1| hypothetical protein [Wolffia arrhiza]
Length = 164
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG---KISWTNVWGHFCLC 100
+++SVLKLDGS FDV + +A+V +L+ AI + + EGQ ISW +VW +FCL
Sbjct: 48 MKISVLKLDGSSFDVVVSNSASVKDLKLAIRKKIE-AMQEGQMGHRHISWRHVWANFCLS 106
Query: 101 YDGRKLVNDKTHIRDFRMKDGDELQF 126
+D KL+ D + ++ F + +++F
Sbjct: 107 HDNEKLIEDDSSLQKFGIHSNSQVRF 132
>gi|2864616|emb|CAA16963.1| hypothetical protein [Arabidopsis thaliana]
gi|7270131|emb|CAB79945.1| hypothetical protein [Arabidopsis thaliana]
Length = 364
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 32 RTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISW 90
R+ Y ++P+ I+L+VLKLDGS F + + + ATVGEL+ A+E F+ P G GKISW
Sbjct: 216 RSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGKISW 274
>gi|449455569|ref|XP_004145525.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cucumis sativus]
Length = 181
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 31 VRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEE-VFTLSPTE-GQGKI 88
V T+ L+L +R+SVLKLDG+ DV I +AT+ +L+ AI++ V + ++ G I
Sbjct: 57 VDTLISLELGSA-MRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHI 115
Query: 89 SWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM--SLDYLHSKRR 140
SW +VW +FCL + KL++D + ++DF +++ +++F ++ HS+RR
Sbjct: 116 SWKHVWANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRR 169
>gi|449519748|ref|XP_004166896.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cucumis sativus]
Length = 209
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEE-VFTLSPTE-GQGKISWTNVWGHFCLCY 101
+R+SVLKLDG+ DV I +AT+ +L+ AI++ V + ++ G ISW +VW +FCL +
Sbjct: 97 MRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAH 156
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM--SLDYLHSKRR 140
KL++D + ++DF +++ +++F ++ HS+RR
Sbjct: 157 LNEKLLDDSSVLQDFGIRNNSQIRFIPYVMSKSSRTHSRRR 197
>gi|242074686|ref|XP_002447279.1| hypothetical protein SORBIDRAFT_06g031870 [Sorghum bicolor]
gi|241938462|gb|EES11607.1| hypothetical protein SORBIDRAFT_06g031870 [Sorghum bicolor]
Length = 183
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCY 101
+RLSV+KLD + F+V + +ATV +L+ AI + E G ISW +VW ++CL +
Sbjct: 71 MRLSVVKLDNTSFEVAVLNSATVKDLKLAIRKKINEIEQEQMGHRHISWKHVWDNYCLTH 130
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL+ND + + + +++ ++ FS H+
Sbjct: 131 HNEKLINDNSALSAYGVRNNSKVCFSPHV 159
>gi|356538589|ref|XP_003537785.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 1 [Glycine max]
Length = 163
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 31 VRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKI 88
V T+ L+L +R+SVLKLDG+ DV + +ATV +L+ AI++ + G I
Sbjct: 39 VDTLINLELGSA-MRISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHI 97
Query: 89 SWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
SW +VW ++CL KL++D +++F +++ ++QF ++
Sbjct: 98 SWKHVWANYCLSCHNNKLLDDNEALQNFGVRNNSQVQFVSYV 139
>gi|356541000|ref|XP_003538972.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Glycine max]
Length = 187
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 31 VRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKI 88
V T+ L+L +R+SVLKLDG+ DV + +ATV +L+ AI++ + G I
Sbjct: 63 VDTLINLELGSA-MRISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHI 121
Query: 89 SWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
SW +VW ++CL KL++D +++F +++ ++QF ++
Sbjct: 122 SWKHVWANYCLSCHNNKLLDDNEALQNFGVRNNSQVQFVSYV 163
>gi|388501190|gb|AFK38661.1| unknown [Lotus japonicus]
Length = 163
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKISWTNVWGHFCLCY 101
+R+S++KLD + FDV + +ATV +L+ AI++ G +ISW VW CL Y
Sbjct: 51 MRISIIKLDATSFDVTVMNSATVKDLKLAIKKKVNDMEQSNMGHRQISWRGVWAKCCLSY 110
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQF 126
+ KL+ND +++F +++ ++ F
Sbjct: 111 NNHKLLNDDDALQNFGVRNNSQVHF 135
>gi|414584945|tpg|DAA35516.1| TPA: hypothetical protein ZEAMMB73_975050 [Zea mays]
Length = 177
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCY 101
+RL+V+KLD + FDV + +ATV +L+ AI + E G ISW +VW ++CL +
Sbjct: 61 MRLTVVKLDNTSFDVAVLNSATVKDLKLAIRKKINEIEQEKMGHRHISWKHVWDNYCLTH 120
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL+ D + + + +++ ++ FS H+
Sbjct: 121 HNEKLIEDNSTLSSYGVRNNSKVCFSPHV 149
>gi|356538591|ref|XP_003537786.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 2 [Glycine max]
Length = 190
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKISWTNVWGHFCLCY 101
+R+SVLKLDG+ DV + +ATV +L+ AI++ + G ISW +VW ++CL
Sbjct: 78 MRISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISWKHVWANYCLSC 137
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL++D +++F +++ ++QF ++
Sbjct: 138 HNNKLLDDNEALQNFGVRNNSQVQFVSYV 166
>gi|357473839|ref|XP_003607204.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355508259|gb|AES89401.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 162
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 31 VRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEV--FTLSPTEGQGKI 88
V T+ L+L +R++VLKLD + FDV + AT+ +L+ AI++ + + G I
Sbjct: 38 VETLIGLELGSA-MRITVLKLDTTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHI 96
Query: 89 SWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQF 126
SW +VW ++CL +D KL+ND +++ +++ ++ F
Sbjct: 97 SWRSVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQIHF 134
>gi|255638264|gb|ACU19445.1| unknown [Glycine max]
Length = 190
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKISWTNVWGHFCLCY 101
+R+SVLKLDG+ DV + +ATV +L+ AI++ + G ISW +VW ++CL
Sbjct: 78 MRISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISWKHVWANYCLSC 137
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL++D +++F +++ ++QF ++
Sbjct: 138 HNNKLLDDNEALQNFGVRNNFQVQFVSYV 166
>gi|390337966|ref|XP_001199326.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Strongylocentrotus purpuratus]
Length = 167
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSP--TEGQGKISWTNVWGHFCLCYDGRK 105
V + +G V + + ATV +L+ AI+ F L E + KISW VW + LC++G K
Sbjct: 76 VRRAEGDVMPVVVMQTATVQDLKSAIKRYFELKQDREEIKKKISWRYVWRSYYLCFEGEK 135
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK 138
L +D IRDF +++ E+ F++ LHSK
Sbjct: 136 LTDDYKKIRDFGIRNRAEVTFAKR-----LHSK 163
>gi|390333381|ref|XP_794255.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Strongylocentrotus purpuratus]
Length = 167
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSP--TEGQGKISWTNVWGHFCLCYDGRK 105
V + +G V + + ATV +L+ AI+ F L E + KISW VW + LC++G K
Sbjct: 76 VRRAEGDVMPVVVMQTATVQDLKSAIKRYFELKQDREEIKKKISWRYVWRSYYLCFEGEK 135
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSK 138
L +D IRDF +++ E+ F++ LHSK
Sbjct: 136 LTDDYKKIRDFGIRNRAEVTFAKR-----LHSK 163
>gi|388495574|gb|AFK35853.1| unknown [Lotus japonicus]
Length = 162
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKISWTNVWGHFCLCY 101
+R+S++KLD + FDV + +ATV +L+ AI++ G +ISW VW CL Y
Sbjct: 51 MRISIIKLDATSFDVTVMNSATVKDLKLAIKKKVNDMEQSNMGHRQISWRGVWAKCCLSY 110
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQF 126
+ KL+ND +++F +++ ++ F
Sbjct: 111 NNHKLLNDDA-LQNFGVRNNSQVHF 134
>gi|116309855|emb|CAH66890.1| OSIGBa0099L20.5 [Oryza sativa Indica Group]
gi|218195764|gb|EEC78191.1| hypothetical protein OsI_17798 [Oryza sativa Indica Group]
Length = 187
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCY 101
+RL+V+KLDG+ FDV + ATV +L+ AI + E G ISW ++W ++CL +
Sbjct: 75 MRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEQEKMGHRHISWKHIWDNYCLTH 134
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL++D + + + + ++ FS H+
Sbjct: 135 QNEKLIDDNSVLSSNGICNNSKVYFSPHV 163
>gi|38346077|emb|CAE04845.2| OSJNBa0084K01.17 [Oryza sativa Japonica Group]
gi|222629718|gb|EEE61850.1| hypothetical protein OsJ_16518 [Oryza sativa Japonica Group]
Length = 187
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCY 101
+RL+V+KLDG+ FDV + ATV +L+ AI + E G ISW ++W ++CL +
Sbjct: 75 MRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEQEKMGHRHISWKHIWDNYCLTH 134
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL++D + + + + ++ FS H+
Sbjct: 135 QNEKLIDDNSVLSSNGICNNSKVYFSPHV 163
>gi|149392044|gb|ABR25901.1| conserved hypothetical protein [Oryza sativa Indica Group]
Length = 95
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAI-EEVFTLSPTE-GQGKISWTNVWGHFCLCY 101
+RL+V+KLDG+ FDV + ATV +L+ AI ++ + P + G ISW ++W ++CL +
Sbjct: 2 MRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEPEKMGHRHISWKHIWDNYCLTH 61
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL++D + + + + ++ FS H+
Sbjct: 62 QNEKLIDDNSVLSSNGICNNSKVYFSPHV 90
>gi|357473841|ref|XP_003607205.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355508260|gb|AES89402.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 146
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 31 VRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEV--FTLSPTEGQGKI 88
V T+ L+L +R++VLKLD + FDV + AT+ +L+ AI++ + + G I
Sbjct: 38 VETLIGLELGSA-MRITVLKLDTTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHI 96
Query: 89 SWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124
SW +VW ++CL +D KL+ND +++ +++ ++
Sbjct: 97 SWRSVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQV 132
>gi|198438499|ref|XP_002131302.1| PREDICTED: similar to U11/U12 snRNP 25K protein isoform 1 [Ciona
intestinalis]
Length = 143
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCYDG 103
+ + + DG + V ++++AT+GEL++AI L G ISW VW + L YDG
Sbjct: 54 IRIRRADGFTYPVIVKQDATIGELKKAITRHVQLKQQREGGNQCISWRRVWKSYWLYYDG 113
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
+KL D ++D+ +++ DE+ F + +
Sbjct: 114 QKLKEDSHKLKDYGLRNHDEVTFIKRL 140
>gi|410902817|ref|XP_003964890.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Takifugu rubripes]
Length = 183
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPT-EGQGK-ISWTNVWGHFCLCY 101
+ + VLK DG + + +NATV +L++AI L EG K +SW VW F L +
Sbjct: 92 MTVKVLKADGEVMPIVVVQNATVLDLKKAIRRFMELKQQREGGVKCVSWRYVWRTFNLVF 151
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
G KL +D+ +RD+ +K+ DE+ F + +
Sbjct: 152 QGEKLEDDRMRLRDYGIKNRDEVTFMKKL 180
>gi|357477471|ref|XP_003609021.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355510076|gb|AES91218.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 441
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEV--FTLSPTEGQGKISWTNVWGHFCLCY 101
+R++VLKLD + FDV + AT+ +L+ AI++ + + G ISW +VW ++CL +
Sbjct: 319 MRITVLKLDTTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSF 378
Query: 102 DGRKLVNDKTHIRDFRMKDGDE 123
D KL+ND +++ +++ +
Sbjct: 379 DNNKLLNDDDVLQNLGVRNNSQ 400
>gi|321459551|gb|EFX70603.1| hypothetical protein DAPPUDRAFT_231603 [Daphnia pulex]
Length = 207
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS----PTEGQGKISWTNVWGHFCL 99
I + + + DG+ V I +NATVG+L++A+E LS + Q +I+W VW + L
Sbjct: 114 IHVEIHREDGTSLPVIIRQNATVGQLKRAVERATELSLSRDANQRQRRINWKYVWKTYWL 173
Query: 100 CYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
G KL +D I+D + +GD + F + +
Sbjct: 174 YAHGAKLKDDMATIKDCALSNGDGVSFIKRL 204
>gi|344292082|ref|XP_003417757.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Loxodonta africana]
Length = 171
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L + G
Sbjct: 82 VCVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYYLTFVG 141
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 142 EKLTEDRKKLRDYGIRNRDEVSFIKKL 168
>gi|255641762|gb|ACU21151.1| unknown [Glycine max]
Length = 113
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 36 YLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWG 95
Y +LP +RL+VLKLDGS F + + + ATV EL+ A+E VF+ P +GQ K G
Sbjct: 44 YDRLPSQPLRLTVLKLDGSCFHIQVSKMATVAELKDAVEAVFSHVPHKGQQKFHGRMFGG 103
Query: 96 HFC 98
+F
Sbjct: 104 NFV 106
>gi|47220063|emb|CAG12211.1| unnamed protein product [Tetraodon nigroviridis]
Length = 188
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPT-EGQGK-ISWTNVWGHFCLCY 101
+ + VLK DG + + +NATV +L++AI L EG K +SW VW + L +
Sbjct: 97 MTVRVLKADGEVMPIVVVQNATVLDLKKAIRRFMELKQQREGGVKYVSWRYVWRTYHLVF 156
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
G KL +D+ ++D+ +K+ DE+ F + +
Sbjct: 157 QGEKLEDDRMRLKDYGIKNRDEVTFMKKL 185
>gi|427786405|gb|JAA58654.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 168
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 36 YLKLPQPR-IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTN 92
YL L + + L V K +G + V +E+ ATV +L++AI TL K +SW
Sbjct: 68 YLALEHGQAMSLVVHKANGDYYTVVVEQKATVLDLKKAIRRHVTLRMARKGVKRVLSWKY 127
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
VW + L +DG L DK +RDF +++ +L F + +
Sbjct: 128 VWKTYWLSFDGELLKEDKALLRDFGIRNNSQLTFVKRL 165
>gi|392351107|ref|XP_213260.4| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Rattus norvegicus]
Length = 182
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 93 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 152
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 153 EKLTEDRKKLRDYGIRNRDEVSFIKKL 179
>gi|30680468|ref|NP_187443.2| U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|27754393|gb|AAO22645.1| unknown protein [Arabidopsis thaliana]
gi|48310596|gb|AAT41846.1| At3g07860 [Arabidopsis thaliana]
gi|332641091|gb|AEE74612.1| U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 165
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 20/94 (21%)
Query: 44 IRLSVLKLDGSRFDVYIERNAT-----------VGELRQAIEEVFTLSPTEGQGKISWTN 92
+RLSV+KLDGS DV + +AT V E+ QA G ISW +
Sbjct: 52 MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQA---------NMGHRHISWKH 102
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQF 126
VW +FCL + KL++D ++D +++ ++ F
Sbjct: 103 VWSNFCLSCNNEKLLDDNAVLQDVGIRNNSQVTF 136
>gi|354499600|ref|XP_003511896.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cricetulus griseus]
Length = 169
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 82 VCKMDGEVMPVVVVQNATVLDLKKAIQRYMQLKQEREGGIQHISWSYVWRTYHLTSAGEK 141
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 142 LTEDRKKLRDYGIRNRDEVSFIKKL 166
>gi|301769555|ref|XP_002920234.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Ailuropoda melanoleuca]
Length = 204
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 117 VCKMDGEIMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYYLTSAGEK 176
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 177 LTEDRKKLRDYGIRNRDEVSFIKKL 201
>gi|73959877|ref|XP_854401.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Canis lupus familiaris]
Length = 213
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 126 VCKMDGEIMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYYLTSAGEK 185
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 186 LTEDRKKLRDYGIRNRDEVSFIKKL 210
>gi|344254276|gb|EGW10380.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cricetulus
griseus]
Length = 123
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYMQLKQEREGGIQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|351711231|gb|EHB14150.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Heterocephalus glaber]
Length = 169
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 82 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 141
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 142 LTEDRKKLRDYGIRNRDEVSFIKKL 166
>gi|262118251|ref|NP_084369.2| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Mus
musculus]
gi|395835627|ref|XP_003790778.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Otolemur garnettii]
gi|68052366|sp|Q8VIK1.1|CP033_MOUSE RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa
protein; Short=U11/U12 snRNP 25 kDa protein
gi|16973675|gb|AAL32366.1| C16ORF33 [Mus musculus]
gi|20380350|gb|AAH28766.1| Small nuclear ribonucleoprotein 25 (U11/U12) [Mus musculus]
gi|148691820|gb|EDL23767.1| RIKEN cDNA 3300001G02, isoform CRA_d [Mus musculus]
gi|149052203|gb|EDM04020.1| similar to chromosome 16 open reading frame 33; minus -99 protein
(predicted), isoform CRA_b [Rattus norvegicus]
gi|195977134|gb|ACG63681.1| U11/U12 small nuclear ribonucleoprotein protein (predicted)
[Otolemur garnettii]
Length = 123
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|338713072|ref|XP_001496673.3| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Equus caballus]
Length = 208
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 119 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 178
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 179 EKLTEDRKKLRDYGIRNRDEVSFIKKL 205
>gi|355721010|gb|AES07123.1| small nuclear ribonucleoprotein 25kDa [Mustela putorius furo]
Length = 157
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 71 VCKMDGEIMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYYLTSAGEK 130
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L +D+ +RD+ +++ DE+ F + +
Sbjct: 131 LTDDRKKLRDYGIRNRDEVSFIKKL 155
>gi|432098907|gb|ELK28397.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Myotis
davidii]
Length = 123
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL +D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTDDRKKLRDYGIRNRDEVSFIKKL 120
>gi|410985647|ref|XP_003999130.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Felis catus]
Length = 180
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 93 VCKMDGEIMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYYLTSAGEK 152
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 153 LTEDRKKLRDYGIRNRDEVSFIKKL 177
>gi|348584706|ref|XP_003478113.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cavia porcellus]
Length = 156
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 69 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 128
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 129 LTEDRKKLRDYGIRNRDEVSFIKKL 153
>gi|417408430|gb|JAA50766.1| Hypothetical protein, partial [Desmodus rotundus]
Length = 183
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 96 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEK 155
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 156 LTEDRKKLRDYGIRNRDEVSFIKKL 180
>gi|12859665|dbj|BAB31728.1| unnamed protein product [Mus musculus]
Length = 123
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 36 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 95
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMS 131
L D+ +RD+ +++ DE+ F + +
Sbjct: 96 LTEDRKKLRDYGIRNRDEVSFIKKLG 121
>gi|73586763|gb|AAI03172.1| SNRNP25 protein [Bos taurus]
Length = 166
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 77 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 136
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 137 EKLTEDRKKLRDYGIRNRDEVSFIKKL 163
>gi|18463966|gb|AAL73047.1| C16ORF33 [Sphoeroides nephelus]
Length = 109
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPT-EGQGK-ISWTNVWGHFCLCYDG 103
+ VLK DG + + +NATV +L++AI L EG K +SW VW + L + G
Sbjct: 20 VRVLKADGEVMPIVVVQNATVLDLKKAIRRFMELKQQREGGVKYVSWRYVWRTYHLVFQG 79
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ ++D+ +K+ DE+ F + +
Sbjct: 80 EKLEGDRMRLKDYGIKNRDEVTFMKKL 106
>gi|262205517|ref|NP_001160084.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Bos taurus]
gi|160017307|sp|Q3ZBQ4.2|CP033_BOVIN RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa
protein; Short=U11/U12 snRNP 25 kDa protein
gi|296473635|tpg|DAA15750.1| TPA: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Bos
taurus]
gi|431906773|gb|ELK10894.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Pteropus
alecto]
Length = 123
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|226822865|gb|ACO83097.1| U11/U12 snRNP 25K protein (predicted) [Dasypus novemcinctus]
Length = 123
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGIQHISWAYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|297829342|ref|XP_002882553.1| hypothetical protein ARALYDRAFT_478124 [Arabidopsis lyrata subsp.
lyrata]
gi|297328393|gb|EFH58812.1| hypothetical protein ARALYDRAFT_478124 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF--TLSPTEGQGKISWTNVWGHFCLCY 101
+RLSV+KLDGS DV + +AT+ +L+ I++ T G ISW +VW +FCL
Sbjct: 52 MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNETEQANMGHRHISWKHVWSNFCLSC 111
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQF 126
+ KL++D ++D +++ ++ F
Sbjct: 112 NNEKLLDDNALLQDVGIRNNSQVTF 136
>gi|440913470|gb|ELR62920.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial
[Bos grunniens mutus]
Length = 199
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 110 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 169
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 170 EKLTEDRKKLRDYGIRNRDEVSFIKKL 196
>gi|426254135|ref|XP_004020740.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Ovis aries]
Length = 123
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDQKKLRDYGIRNRDEVSFIKKL 120
>gi|6648198|gb|AAF21196.1|AC013483_20 unknown protein [Arabidopsis thaliana]
Length = 232
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Query: 44 IRLSVLKLDGSRFDVYIERNAT-----------VGELRQAIEEVFTLSPTEGQGKISWTN 92
+RLSV+KLDGS DV + +AT V E+ QA G ISW +
Sbjct: 52 MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQA---------NMGHRHISWKH 102
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKRRSK 142
VW +FCL + KL++D ++D +++ ++ F + Y+ K R +
Sbjct: 103 VWSNFCLSCNNEKLLDDNAVLQDVGIRNNSQVTF-----MPYVMKKGRGR 147
>gi|291415424|ref|XP_002723952.1| PREDICTED: chromosome 16 open reading frame 33-like, partial
[Oryctolagus cuniculus]
Length = 174
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 87 VSKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 146
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 147 LTEDRKKLRDYGIRNRDEVSFIKKL 171
>gi|392332036|ref|XP_001062061.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Rattus norvegicus]
Length = 237
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 150 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 209
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 210 LTEDRKKLRDYGIRNRDEVSFIKKL 234
>gi|339522115|gb|AEJ84222.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Capra
hircus]
Length = 123
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRREREGGIQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|148691819|gb|EDL23766.1| RIKEN cDNA 3300001G02, isoform CRA_c [Mus musculus]
Length = 123
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 34 VRVCKMDGEVTAVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|297283095|ref|XP_001082002.2| PREDICTED: hypothetical protein LOC693295 [Macaca mulatta]
Length = 266
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 179 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 238
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L DK +RD+ +++ DE+ F + +
Sbjct: 239 LTEDKKKLRDYGIRNRDEVSFIKKL 263
>gi|183396439|gb|ACC62114.1| U11/U12 snRNP protein (predicted) [Rhinolophus ferrumequinum]
Length = 123
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+DG V + +NATV +L++AI+ L G ISW VW + L G
Sbjct: 34 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWPYVWRTYHLTSAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 94 EKLTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|281183133|ref|NP_001162284.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Papio
anubis]
gi|160904111|gb|ABX52098.1| chromosome 16 open reading frame 33 (predicted) [Papio anubis]
gi|355709782|gb|EHH31246.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
gi|380787573|gb|AFE65662.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
gi|383421593|gb|AFH34010.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
gi|384949440|gb|AFI38325.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
Length = 132
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 45 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 104
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L DK +RD+ +++ DE+ F + +
Sbjct: 105 LTEDKKKLRDYGIRNRDEVSFIKKL 129
>gi|159163176|pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
3300001g02) Product Homologous To Ubiquitin Fold
Length = 105
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 12 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 71
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMS 131
L D+ +RD+ +++ DE+ F + +
Sbjct: 72 LTEDRKKLRDYGIRNRDEVSFIKKLG 97
>gi|355756392|gb|EHH60000.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
fascicularis]
Length = 132
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 45 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 104
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L DK +RD+ +++ DE+ F + +
Sbjct: 105 LTEDKKKLRDYGIRNRDEVSFIKKL 129
>gi|403273560|ref|XP_003928576.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein,
partial [Saimiri boliviensis boliviensis]
Length = 200
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 113 VCKMDGEVMPVVVVQSATVLDLKKAIQRYMQLKQEREGGIQHISWSYVWRTYHLTSAGEK 172
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 173 LTEDRKKLRDYGIRNRDEVSFIKKL 197
>gi|119606283|gb|EAW85877.1| chromosome 16 open reading frame 33, isoform CRA_a [Homo sapiens]
Length = 267
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 180 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 239
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 240 LTEDRKKLRDYGIRNRDEVSFIKKL 264
>gi|62955357|ref|NP_001017690.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Danio
rerio]
gi|62204893|gb|AAH93151.1| Zgc:112000 [Danio rerio]
Length = 173
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K DG + + ++ATV +L++AI L G +SW VW F L ++G
Sbjct: 84 VRVCKADGEVMPIVVVQSATVLDLKKAIRRYMELKQQREGGVKHVSWKYVWRTFHLVFNG 143
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL +D+ ++D+ +++ DE+ FS+ +
Sbjct: 144 EKLEDDRRKLKDYGVRNRDEVTFSKKL 170
>gi|442756633|gb|JAA70475.1| Putative cytochrome c oxidase subunit cox19 [Ixodes ricinus]
Length = 164
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 36 YLKLPQPR-IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTN 92
YL L + + L VL+ DG + V +E+ ATV +L++A++ TL K +SW
Sbjct: 64 YLALEHGQAMSLRVLRADGDPYTVVVEQKATVLDLKKALQRHATLRMARKGVKRVVSWRY 123
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQF 126
+W + L ++G+ L D+T +RD +++ EL F
Sbjct: 124 IWRTYWLSFEGQPLNQDRTLLRDAGIRNNSELCF 157
>gi|335284777|ref|XP_003124710.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like, partial [Sus scrofa]
Length = 134
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 45 VRVCKTDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGVQHISWSYVWRTYHLMAAG 104
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 131
>gi|390471020|ref|XP_003734415.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Callithrix jacchus]
Length = 182
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 95 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 154
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 155 LTEDRKKLRDYGIRNRDEVSFIKKL 179
>gi|48427640|tpg|DAA05499.1| TPA_exp: U11/U12 snRNP 25K [Homo sapiens]
gi|123237049|emb|CAI95606.2| chromosome 16 open reading frame 33 [Homo sapiens]
gi|167427356|gb|ABZ80331.1| U11/U12 snRNP 25K protein (predicted) [Callithrix jacchus]
gi|169246091|gb|ACA51067.1| U11/U12 snRNP protein (predicted) [Callicebus moloch]
Length = 123
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 36 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 95
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 96 LTEDRKKLRDYGIRNRDEVSFIKKL 120
>gi|335308396|ref|XP_003361215.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like, partial [Sus scrofa]
Length = 109
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 20 VRVCKTDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGVQHISWSYVWRTYHLMAAG 79
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +RD+ +++ DE+ F + +
Sbjct: 80 EKLTEDRKKLRDYGIRNRDEVSFIKKL 106
>gi|10439480|dbj|BAB15505.1| unnamed protein product [Homo sapiens]
Length = 132
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 45 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 104
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 105 LAEDRKKLRDYGIRNRDEVSFIKKL 129
>gi|260814781|ref|XP_002602092.1| hypothetical protein BRAFLDRAFT_61248 [Branchiostoma floridae]
gi|229287398|gb|EEN58104.1| hypothetical protein BRAFLDRAFT_61248 [Branchiostoma floridae]
Length = 136
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 53 GSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRKLVNDK 110
G + + ++ATV +L+ AI TL T G KISW VW + L +DG KL +
Sbjct: 50 GGIMPIVVPQDATVVDLKHAISRYVTLKQTREGGTTKISWRYVWRTYWLTFDGEKLSQNN 109
Query: 111 THIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQNV 146
++D+ +++ EL+F + + RSK + V
Sbjct: 110 KKLKDYGIRNRAELRFIKRL---------RSKVEGV 136
>gi|13443018|ref|NP_078847.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Homo
sapiens]
gi|114660086|ref|XP_523242.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
isoform 3 [Pan troglodytes]
gi|395747207|ref|XP_003778569.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
isoform 1 [Pongo abelii]
gi|395747209|ref|XP_003778570.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
isoform 2 [Pongo abelii]
gi|397476070|ref|XP_003809434.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Pan paniscus]
gi|426380497|ref|XP_004056899.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Gorilla gorilla gorilla]
gi|426380503|ref|XP_004056902.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 1 [Gorilla gorilla gorilla]
gi|426380505|ref|XP_004056903.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 2 [Gorilla gorilla gorilla]
gi|68052377|sp|Q9BV90.1|CP033_HUMAN RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa
protein; Short=U11/U12 snRNP 25 kDa protein;
Short=U11/U12-25K; AltName: Full=Minus-99 protein
gi|14336677|gb|AAK61211.1|AE006462_3 Minus -99 protein [Homo sapiens]
gi|12655063|gb|AAH01381.1| Small nuclear ribonucleoprotein 25kDa (U11/U12) [Homo sapiens]
gi|14327922|gb|AAH09179.1| Small nuclear ribonucleoprotein 25kDa (U11/U12) [Homo sapiens]
gi|90653003|gb|ABD95904.1| U11/U12 snRNP 25 kDa protein [Homo sapiens]
gi|123982628|gb|ABM83055.1| chromosome 16 open reading frame 33 [synthetic construct]
gi|123983044|gb|ABM83263.1| chromosome 16 open reading frame 33 [synthetic construct]
gi|123997293|gb|ABM86248.1| chromosome 16 open reading frame 33 [synthetic construct]
gi|410222032|gb|JAA08235.1| small nuclear ribonucleoprotein 25kDa (U11/U12) [Pan troglodytes]
gi|410248962|gb|JAA12448.1| small nuclear ribonucleoprotein 25kDa (U11/U12) [Pan troglodytes]
gi|410304654|gb|JAA30927.1| small nuclear ribonucleoprotein 25kDa (U11/U12) [Pan troglodytes]
Length = 132
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + ++ATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 45 VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 104
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ DE+ F + +
Sbjct: 105 LTEDRKKLRDYGIRNRDEVSFIKKL 129
>gi|348509153|ref|XP_003442116.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Oreochromis niloticus]
Length = 187
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ VLK D + + +NATV +L++AI L G ISW VW + L + G
Sbjct: 98 VRVLKADSEVMPIVVVQNATVLDLKKAICRFMELKQQREGGVKHISWRYVWRTYHLVFQG 157
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL +DK ++D+ +++ DE+ F + +
Sbjct: 158 EKLEDDKMRLKDYGIRNRDEVTFMKRL 184
>gi|213510978|ref|NP_001134941.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Salmo
salar]
gi|209737428|gb|ACI69583.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Salmo
salar]
Length = 188
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSP--TEGQGKISWTNVWGHFCLCYDGRK 105
V K DG + + +NA V +L++AI+ L G +SW VW F L + G K
Sbjct: 101 VCKADGEVMPIVVVQNAMVLDLKKAIQRFMELKQQRVGGVKHVSWRYVWRTFHLVFQGEK 160
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L +DK ++D+ +++ DE+ F + +
Sbjct: 161 LDDDKMKLKDYGIRNRDEVTFMKRL 185
>gi|241163699|ref|XP_002409330.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
[Ixodes scapularis]
gi|215494528|gb|EEC04169.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
[Ixodes scapularis]
Length = 136
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCYDG 103
L VL+ DG + V +E+ AT+ +L++A++ TL K +SW +W + L ++G
Sbjct: 47 LRVLRADGDPYTVVVEQKATILDLKKALQRHATLRMARKGVKRVVSWRYIWKTYWLSFEG 106
Query: 104 RKLVNDKTHIRDFRMKDGDELQF 126
+ L D+T +RD +++ EL F
Sbjct: 107 QPLNQDRTLLRDTGIRNNSELCF 129
>gi|346473065|gb|AEO36377.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 36 YLKLPQPR-IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTN 92
YL L + + L V K D + V +E+ ATV +L++A+ TL K +SW
Sbjct: 71 YLALEHGQAMSLVVHKADNDYYTVVVEQKATVLDLKKALRRHVTLRMARKGVKRVLSWKY 130
Query: 93 VWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
VW + L ++G L +DK +RDF +++ +L F + +
Sbjct: 131 VWKTYWLSFEGELLRDDKALLRDFGIRNNSQLSFVKRL 168
>gi|89268289|emb|CAJ82445.1| novel protein [Xenopus (Silurana) tropicalis]
Length = 175
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDG 103
+ V K DG V + +NATV +L++AI+ L G ISW VW + L + G
Sbjct: 86 VRVCKADGEIMPVVVVQNATVLDLKRAIQRYIQLKHQREGGIQHISWKYVWRTYHLSFSG 145
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D +R++ +K+ DE+ F + +
Sbjct: 146 EKLEEDSRSLREYGIKNRDEVVFVKKL 172
>gi|291223915|ref|XP_002731950.1| PREDICTED: chromosome 16 open reading frame 33-like [Saccoglossus
kowalevskii]
Length = 162
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS-PTEGQGK-ISWTNVWGHFCLCY 101
+ + V K +G V + + ATV +LR AI+ FT+ EG K ISW +W + LC+
Sbjct: 71 LTVKVRKQNGEVIPVVVLQGATVRDLRNAIKRHFTMKLEREGGNKFISWRYIWKTYWLCF 130
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSR 128
+ KL I+D+ +++ DE+ F +
Sbjct: 131 EEEKLTEINKKIKDYGIRNRDEVTFVK 157
>gi|395515604|ref|XP_003761991.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Sarcophilus harrisii]
Length = 168
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDG 103
+ V K+DG V + +NAT +L++AI+ L G ISW+ +W + L + G
Sbjct: 79 VRVCKVDGEVMPVVVVQNATTLDLKKAIQRYVQLKQEREGGIQHISWSYIWRTYHLTFAG 138
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D +R++ +++ DE+ F + +
Sbjct: 139 EKLTEDAKKLREYGIRNRDEVSFIKKL 165
>gi|62859759|ref|NP_001016702.1| uncharacterized protein LOC549456 [Xenopus (Silurana) tropicalis]
gi|60550970|gb|AAH91616.1| hypothetical protein LOC549456 [Xenopus (Silurana) tropicalis]
Length = 167
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K DG V + +NATV +L++AI+ L G ISW VW + L + G K
Sbjct: 80 VCKADGEIMPVVVVQNATVLDLKRAIQRYIQLKHQREGGIQHISWKYVWRTYHLSFSGEK 139
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D +R++ +K+ DE+ F + +
Sbjct: 140 LEEDSRSLREYGIKNRDEVVFVKKL 164
>gi|432868044|ref|XP_004071383.1| PREDICTED: LOW QUALITY PROTEIN: U11/U12 small nuclear
ribonucleoprotein 25 kDa protein-like [Oryzias latipes]
Length = 180
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 50 KLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRKLV 107
K DG + + +NATV +L++AI L G +SW VW + L + G KL
Sbjct: 95 KADGEIMPIVVVQNATVLDLKKAIRRFMELKQQREGGVKHVSWRYVWRTYYLVFQGEKLE 154
Query: 108 NDKTHIRDFRMKDGDELQFSRHM 130
+D ++D+ +++ DE+ F + +
Sbjct: 155 DDSIRLKDYGIRNRDEVMFMKKL 177
>gi|156365484|ref|XP_001626675.1| predicted protein [Nematostella vectensis]
gi|156213561|gb|EDO34575.1| predicted protein [Nematostella vectensis]
Length = 154
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 58 VYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD 115
V + ++ATV +L++AI+ TL T G ISW VW F L ++G+KL +D +++
Sbjct: 77 VVVVQDATVLDLKKAIQRHITLKQTREGGATYISWKYVWRTFWLMFEGQKLSDDHKSLKE 136
Query: 116 FRMKDGDELQFSRHM 130
+ + DE+ F++ +
Sbjct: 137 YGISSRDEVTFAKRL 151
>gi|443722217|gb|ELU11180.1| hypothetical protein CAPTEDRAFT_157309 [Capitella teleta]
Length = 174
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 4 FLTERRCVAPLTLDDVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN 63
FL+E PL + D+ +R+ L+ Q + ++V + D + + +N
Sbjct: 49 FLSELIVGDPL----LQDLPSQVTVEEIRSQIALEHGQA-MTVNVRRGDDKVLPIVVLQN 103
Query: 64 ATVGELRQAIEEVFTLSPT---EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
ATV +L++AI F L+ +G ISW VW L ++G+KL DKT ++D+ + +
Sbjct: 104 ATVADLKKAIRHYFHLNLNRDGDGDRHISWRYVWKRNWLYFNGQKLTEDKTLLKDYGIFN 163
Query: 121 GDELQFSRHM 130
E+ F + +
Sbjct: 164 SSEVTFIKRL 173
>gi|126335357|ref|XP_001371960.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Monodelphis domestica]
Length = 175
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NAT +L++AI+ L G ISW+ +W + L + G K
Sbjct: 88 VCKVDGEVMPVVVVQNATTLDLKKAIQRYVQLKQEREGGIQHISWSYIWRTYHLTFAGEK 147
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D +R++ +++ DE+ F + +
Sbjct: 148 LTEDGKKLREYGIRNRDEVSFIKKL 172
>gi|405977277|gb|EKC41736.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Crassostrea
gigas]
Length = 171
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGK--ISWTNVWGHFCLCYDG 103
++V + DG V + +N TV +L+ AI+ TL + +GK ISW +W + L ++G
Sbjct: 100 VNVQRADGEVLSVVVVQNGTVLDLKHAIKRHMTLKLSRSKGKKHISWKYIWKRYWLYFEG 159
Query: 104 RKLVNDKTHIRD 115
+KL DK +++
Sbjct: 160 QKLTEDKKQLKE 171
>gi|363739485|ref|XP_423619.3| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Gallus gallus]
Length = 200
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K DG V + +NA+V +L++A+ L G +SW +W + L Y G K
Sbjct: 114 VCKADGESMPVVVVQNASVLDLKKALRRHVQLRQARRGGVQHLSWKYIWRTYHLTYAGEK 173
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L +D+ +R++ +++ DE+ F + +
Sbjct: 174 LADDRKKLREYGIRNRDEVSFIKKL 198
>gi|149496551|ref|XP_001514542.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like, partial [Ornithorhynchus anatinus]
Length = 109
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
+ V K+D V + +NATV +L++AI+ L G ISW+ VW + L + G
Sbjct: 20 VRVCKVDEEVIPVVVVQNATVLDLKKAIQRSVQLRQEREGGTQHISWSYVWRTYHLTFAG 79
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D +R++ +++ D++ FS+ +
Sbjct: 80 EKLTEDGKKLREYGIRNRDQVTFSKKL 106
>gi|357117689|ref|XP_003560596.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Brachypodium distachyon]
Length = 150
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE----GQGKISWTNVWGHFCL 99
+R+ V+KLD + FDV + ATV +L+ AI++ +S E G ISW +W ++CL
Sbjct: 62 MRVIVVKLDDTSFDVPVLNTATVKDLKLAIKK--KISEIEQGQMGYRHISWKYIWENYCL 119
Query: 100 CYDGRKLVNDKTHIRDFRMKDGDEL 124
Y KL +D + + +++ ++
Sbjct: 120 TYQNEKLTDDNSALSSHGVRNNSKV 144
>gi|395853139|ref|XP_003799074.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Otolemur garnettii]
Length = 194
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G
Sbjct: 107 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEM 166
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
L D+ +RD+ +++ E+ F + +
Sbjct: 167 LTEDRKKLRDYGIRNRAEVSFIKKL 191
>gi|148227336|ref|NP_001083423.1| uncharacterized protein LOC398918 [Xenopus laevis]
gi|38014507|gb|AAH60402.1| MGC68520 protein [Xenopus laevis]
Length = 168
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCY 101
+ + V K D V + +NATV +L++AI+ L G ISW VW + L Y
Sbjct: 77 MTVRVCKEDEEIMPVVVVQNATVLDLKRAIQRYIQLKHQREGGIQHISWKYVWRTYHLSY 136
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHM 130
G KL ++ +R++ +K+ DE+ F + +
Sbjct: 137 SGEKLDDEAKSLREYGIKNRDEVVFVKKL 165
>gi|327289177|ref|XP_003229301.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Anolis carolinensis]
Length = 151
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 56 FDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRKLVNDKTHI 113
V + +NA+V +L++A+ L G ISW +W +CL + G KL +D+ +
Sbjct: 73 LPVVVVQNASVLDLKRALRRFVQLRQEREGGIQHISWRYLWRTYCLTFGGEKLTDDRKKL 132
Query: 114 RDFRMKDGDELQFSRHM 130
R++ +++ DE+ F + +
Sbjct: 133 REYGIRNRDEVTFVKKI 149
>gi|383858160|ref|XP_003704570.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Megachile rotundata]
Length = 182
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 63 NATVGELRQAIEE--VFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
N +V L++AI+ +L + KISW +VW + LC+D KLVND +I+ + + +
Sbjct: 103 NTSVLNLKKAIKRHTNLSLKRENVKKKISWKHVWKKYYLCFDNVKLVNDNENIKAYGITN 162
Query: 121 GDELQFSR 128
EL + +
Sbjct: 163 KAELYYVK 170
>gi|226372070|gb|ACO51660.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Rana
catesbeiana]
Length = 123
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
++V K D + + +NATV +L++AI+ L G +SW VW + L + G
Sbjct: 34 VNVCKADKDIMPIVVVQNATVLDLKRAIQRYIQLKHQREGGIQHVSWKYVWRTYYLAFAG 93
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
KL D+ +R++ +K+ DE+ F + +
Sbjct: 94 EKLDRDEKSLREYGIKNRDEVCFVKRL 120
>gi|307182451|gb|EFN69686.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Camponotus
floridanus]
Length = 184
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 63 NATVGELRQAIEEVFTLSPT--EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
N TV +L++AI+ LS + + KISW +VW + LC++ +L ND +I+ + + +
Sbjct: 105 NTTVLDLKKAIKRHMNLSLKREDVKKKISWKHVWKKYHLCFEDIRLSNDNENIKAYNITN 164
Query: 121 GDELQFSR 128
EL F +
Sbjct: 165 KAELHFVK 172
>gi|339238065|ref|XP_003380587.1| putative STAS domain protein [Trichinella spiralis]
gi|316976515|gb|EFV59800.1| putative STAS domain protein [Trichinella spiralis]
Length = 900
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKISWTNVWGHFCLCY 101
+++ + + DG ++ I++NATV EL++ I+ F+ L I+W VW + L +
Sbjct: 694 LKIFIRRFDGKTIEIDIDKNATVKELKKVIQRTFSRKLYNESSIKHINWAYVWRTYWLRF 753
Query: 102 DGRKLVNDKTHI 113
+ +KL +++ HI
Sbjct: 754 NQQKLTDNRAHI 765
>gi|328782996|ref|XP_003250223.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Apis mellifera]
Length = 175
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 63 NATVGELRQAIEE--VFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
N TV +L++AI+ L + + KISW ++W + LC++ KL+ND +I+ + + +
Sbjct: 96 NTTVLDLKKAIKRHTNLALKREKIKKKISWKHIWKKYHLCFENIKLINDNENIKTYGITN 155
Query: 121 GDELQFSR 128
EL + +
Sbjct: 156 KAELYYLK 163
>gi|307200838|gb|EFN80891.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Harpegnathos saltator]
Length = 177
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 64 ATVGELRQAIEEVFTLSPTEG--QGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121
TV +L++AI+ +LS + KISW ++W + LC++ KL N+ +I+ + + +
Sbjct: 100 TTVLDLKKAIKRHMSLSLKRENIKKKISWKHIWKKYHLCFEHIKLANNNENIKTYGIANK 159
Query: 122 DELQFSRHMSLDYLHSKRRSKTQNV 146
EL F + KRR K + V
Sbjct: 160 AELHFMK---------KRREKNKLV 175
>gi|444727238|gb|ELW67739.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Tupaia
chinensis]
Length = 131
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCY 101
+ + V K+DG V + +NATV +L++AI+ L G ISW+ VW + L
Sbjct: 32 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRHVQLKQEREGGTQHISWSYVWRTYHLTS 91
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132
G KL D+ +R+ G H SL
Sbjct: 92 AGEKLTEDRKKLRETAAGQGGNETDMLHPSL 122
>gi|340722517|ref|XP_003399651.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Bombus terrestris]
Length = 180
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 63 NATVGELRQAIEEVFTLSPT--EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
+ TV +L++AI+ LS + + KISW ++W + LC++ +L+ND +I+ + + +
Sbjct: 101 HTTVLDLKKAIKRHTNLSLKREKVKKKISWKHIWKKYHLCFENVRLINDNENIKAYGITN 160
Query: 121 GDELQFSR 128
EL + +
Sbjct: 161 KAELHYVK 168
>gi|332021112|gb|EGI61499.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Acromyrmex
echinatior]
Length = 176
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 63 NATVGELRQAIEEVFTLSPTEG--QGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
N TV +L++AI+ LS + KISW +VW + LC+ +L ND +I+ + + +
Sbjct: 98 NTTVLDLKKAIKRHTNLSLKRENVKKKISWKHVWKKYHLCFGDIRLSNDNENIKAYGITN 157
Query: 121 GDELQFSR 128
EL F +
Sbjct: 158 KIELHFIK 165
>gi|440795556|gb|ELR16676.1| hypothetical protein ACA1_089240 [Acanthamoeba castellanii str.
Neff]
Length = 185
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG---KISWTNVWGHFCLCYD 102
+ VLK DG R + + + EL++ ++ V E G +I+W +VW CL Y+
Sbjct: 77 IYVLKHDGKRIPLVVTYTTMLDELKRQLQLVVDHQTAERLGPTRRINWKHVWDRQCLMYE 136
Query: 103 GRKLVNDK 110
GR+L++ K
Sbjct: 137 GRRLLDGK 144
>gi|156545358|ref|XP_001606078.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Nasonia vitripennis]
Length = 171
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 44 IRLSVLKLDGSRFDVYIER-------------NATVGELRQAIEE--VFTLSPTEGQGKI 88
IR + G ++++ER N +V EL++A++ L + KI
Sbjct: 63 IRAQIAVARGQSIELFLERGPLPTLSIVVPSKNTSVLELKKAVKRHTNLALKREKVTKKI 122
Query: 89 SWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSR 128
SW +VW + L +D L +DK IR++ ++ L++ +
Sbjct: 123 SWKHVWKKYYLSFDNVTLADDKEDIRNYGIRSKAVLKYVK 162
>gi|357604352|gb|EHJ64146.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Danaus
plexippus]
Length = 150
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCY 101
I + V + D V + +N+TV EL++A+ F L + KISW +W + L Y
Sbjct: 58 ITVIVSREDEQPLKVIVPQNSTVRELKKAVARHFELYQQRMGNRVKISWRYIWKTYSLNY 117
Query: 102 DGRKLVNDKTHIRDFRMKDGDELQFSR 128
D L D + I D+ + + L F +
Sbjct: 118 DSLTLDKDDSKITDYGVTNKVILTFKK 144
>gi|350418490|ref|XP_003491874.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Bombus impatiens]
Length = 180
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 63 NATVGELRQAIEEVFTLSPT--EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
+ TV +L++AI+ LS + + KISW ++W + LC++ +L++D +I+ + + +
Sbjct: 101 HTTVLDLKKAIKRHTNLSLKREKVKKKISWKHIWKKYHLCFENVRLIDDNENIKAYGITN 160
Query: 121 GDELQFSR 128
EL + +
Sbjct: 161 KVELHYVK 168
>gi|196010539|ref|XP_002115134.1| hypothetical protein TRIADDRAFT_58967 [Trichoplax adhaerens]
gi|190582517|gb|EDV22590.1| hypothetical protein TRIADDRAFT_58967 [Trichoplax adhaerens]
Length = 154
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQG---KISWTNVWGHFCLCYDGRKLVNDKT 111
R V + + AT+ + ++A + TL + +G +I+W W + L Y+G KL D +
Sbjct: 64 RIAVIVPQTATIKQFKKAFQRQ-TLLHLKRKGESRRINWKYYWKSYWLIYEGIKLEKDDS 122
Query: 112 HIRDFRMKDGDELQFSRHMSLDYLHSKRRSKTQN 145
++ D+ + +G L F++ L K R K+ N
Sbjct: 123 NLIDYGIGNGAMLTFAKR-----LQQKGRVKSYN 151
>gi|340371622|ref|XP_003384344.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Amphimedon queenslandica]
Length = 143
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 37 LKLPQPR-IRLSVLKLDGSRFDVYIERNATVGELRQAIE-EVFTLSPTEGQGK-ISWTNV 93
L L Q R + L+V KLD + F V + + ATV ELR+++E E EG+ +SW V
Sbjct: 42 LALEQGRAMTLNVQKLDNTSFPVIVLQGATVHELRKSVENETVRRLKKEGRTTFVSWGYV 101
Query: 94 WGHFCLCYDGRKL 106
W + L Y +L
Sbjct: 102 WKTYSLFYGQHRL 114
>gi|449475763|ref|XP_004176691.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Taeniopygia guttata]
Length = 76
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 63 NATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120
++ V L++A LS G +SW +W + L Y+G KL +D+ +R++ +++
Sbjct: 5 HSAVTVLKKAFRRHIHLSQAWQGGLQHLSWRYIWRTYHLTYNGEKLADDRKKLREYGIRN 64
Query: 121 GDELQF 126
DE+ F
Sbjct: 65 RDEVSF 70
>gi|67467839|ref|XP_649998.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56466540|gb|EAL44612.1| hypothetical protein EHI_021540 [Entamoeba histolytica HM-1:IMSS]
gi|449707515|gb|EMD47165.1| ubiquitin family protein [Entamoeba histolytica KU27]
Length = 257
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTL-SPTEGQGKISWTNVWGHFCLCYD 102
+R+ + + G+ ++ IE+N T+ EL+Q I +++ + +P L Y
Sbjct: 1 MRVLITTVSGNTHEIEIEQNQTIKELKQNISDLYQIETPL--------------LHLIYK 46
Query: 103 GRKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKR 139
G+ L NDK+ +++ + +G ++ + + YL SK
Sbjct: 47 GKNLKNDKSTLKENEITEGSKITVIKLKTPTYLISKE 83
>gi|222618457|gb|EEE54589.1| hypothetical protein OsJ_01802 [Oryza sativa Japonica Group]
Length = 290
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 52 DGSRFDVYIERNAT-VGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDK 110
DG R V + R EL++ I+ F + PT+ Q G + + Y GR++ ++
Sbjct: 138 DGGRSGVVVTRPMRRTDELQRLIDYYFAMVPTDDQN--------GEWAVTYGGRQVGGEE 189
Query: 111 THIRDFRMKDGDELQF------SRHMSLDYLHSKRRSKTQNV 146
T D+ M+DGD+L+ SR +++D L + +T +
Sbjct: 190 TPA-DYEMEDGDQLRLVPASKPSRFVTIDLLTMVKAKRTYTL 230
>gi|54290738|dbj|BAD61359.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 352
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 52 DGSRFDVYIERNAT-VGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDK 110
DG R V + R EL++ I+ F + PT+ Q G + + Y GR++ ++
Sbjct: 200 DGGRSGVVVTRPMRRTDELQRLIDYYFAMVPTDDQN--------GEWAVTYGGRQVGGEE 251
Query: 111 THIRDFRMKDGDELQF------SRHMSLDYLHSKRRSKTQNV 146
T D+ M+DGD+L+ SR +++D L + +T +
Sbjct: 252 TPA-DYEMEDGDQLRLVPASKPSRFVTIDLLTMVKAKRTYTL 292
>gi|325189533|emb|CCA24020.1| AlNc14C218G9051 [Albugo laibachii Nc14]
Length = 106
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCL 99
P ++L + LDGS DV I R + +LRQ ++ + G+ +ISW +W +F +
Sbjct: 3 PHKALQLRIQCLDGSCIDVAIPRKCSFYQLRQLLQ--YQYVGDGGKRQISWRYIWKNFSI 60
>gi|66820084|ref|XP_643687.1| ubiquitin domain-containing protein [Dictyostelium discoideum AX4]
gi|60471818|gb|EAL69773.1| ubiquitin domain-containing protein [Dictyostelium discoideum AX4]
Length = 2991
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 98 CLCYDGRKLVNDKTHIRDFRMKDGDELQFSR----HMSLDYLHSKRRSKTQNVACQQFSR 153
CL + G+ +V+D I DFR+ +GD + F L Y+ S + QN FS
Sbjct: 849 CLTFQGKMMVDDCQTIEDFRVGNGDTISFQEIGEPRQPLTYVQSVSINFDQNNFALLFSL 908
Query: 154 LSVES 158
L+++S
Sbjct: 909 LNIQS 913
>gi|448360770|ref|ZP_21549397.1| hypothetical protein C481_01937 [Natrialba asiatica DSM 12278]
gi|445652556|gb|ELZ05442.1| hypothetical protein C481_01937 [Natrialba asiatica DSM 12278]
Length = 120
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 41 QPRIRLSVLKLD--GSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFC 98
+PRI L LD G R +V + + I E +TL TE Q +W
Sbjct: 8 EPRIEDETLYLDHDGDRLEV-----GPMEHIVDRIGETYTLEYTEEQSAAAWLRTDSDNT 62
Query: 99 LCYDGRKLVNDKTHIRDF 116
+ +D R++V + TH R+F
Sbjct: 63 ITFDVREVVGEMTHTREF 80
>gi|407039497|gb|EKE39687.1| ubiquitin family protein [Entamoeba nuttalli P19]
Length = 257
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG 103
+R+ + + G+ ++ +++N T+ EL+Q I +++ + L Y G
Sbjct: 1 MRVLITTVSGNTHEIEVDQNQTIKELKQNISDLYQIETQ-------------LLHLIYKG 47
Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHMSLDYLHSKR 139
+ L NDK+ +++ + +G ++ + +L +L SK
Sbjct: 48 KNLKNDKSTLKENEITEGSKITVIKLKTLTHLISKE 83
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,312,730,158
Number of Sequences: 23463169
Number of extensions: 132891295
Number of successful extensions: 308429
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 308196
Number of HSP's gapped (non-prelim): 161
length of query: 205
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 69
effective length of database: 9,168,204,383
effective search space: 632606102427
effective search space used: 632606102427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)